Query 024100
Match_columns 272
No_of_seqs 275 out of 2033
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 1.1E-35 2.4E-40 258.1 8.5 162 102-271 2-163 (218)
2 COG2226 UbiE Methylase involve 99.8 2.1E-20 4.6E-25 165.9 11.9 107 156-271 50-158 (238)
3 PF01209 Ubie_methyltran: ubiE 99.8 2.6E-20 5.6E-25 165.6 9.7 107 155-269 45-153 (233)
4 PF08241 Methyltransf_11: Meth 99.8 2.9E-19 6.4E-24 134.1 11.4 94 162-267 1-95 (95)
5 PLN02233 ubiquinone biosynthes 99.8 6.8E-19 1.5E-23 158.8 14.5 109 155-269 71-182 (261)
6 PLN02396 hexaprenyldihydroxybe 99.8 5.5E-19 1.2E-23 163.8 13.3 105 157-269 131-235 (322)
7 KOG3178 Hydroxyindole-O-methyl 99.8 1.4E-18 3E-23 160.0 13.2 155 104-272 118-278 (342)
8 PLN02244 tocopherol O-methyltr 99.8 4.9E-18 1.1E-22 158.7 14.3 107 156-269 117-223 (340)
9 PTZ00098 phosphoethanolamine N 99.8 9.5E-18 2.1E-22 151.5 14.8 133 121-270 25-157 (263)
10 PF12847 Methyltransf_18: Meth 99.8 6E-18 1.3E-22 131.9 11.8 105 158-269 2-111 (112)
11 PRK11207 tellurite resistance 99.8 7.4E-18 1.6E-22 145.9 11.9 105 156-268 29-133 (197)
12 PRK09489 rsmC 16S ribosomal RN 99.7 2.3E-17 5E-22 154.3 15.5 212 34-268 75-302 (342)
13 PF13649 Methyltransf_25: Meth 99.7 3.8E-18 8.2E-23 131.8 7.4 95 161-263 1-101 (101)
14 COG2227 UbiG 2-polyprenyl-3-me 99.7 4.7E-18 1E-22 149.6 7.4 102 157-268 59-160 (243)
15 PF13847 Methyltransf_31: Meth 99.7 3.5E-17 7.6E-22 135.4 11.9 104 157-269 3-110 (152)
16 PRK15451 tRNA cmo(5)U34 methyl 99.7 5.3E-17 1.2E-21 145.1 13.4 109 156-271 55-166 (247)
17 PRK14103 trans-aconitate 2-met 99.7 3.1E-17 6.8E-22 147.0 11.4 97 155-268 27-125 (255)
18 KOG1270 Methyltransferases [Co 99.7 3.1E-17 6.8E-22 145.6 10.2 105 158-268 90-194 (282)
19 TIGR00477 tehB tellurite resis 99.7 6.3E-17 1.4E-21 139.9 11.2 104 157-269 30-133 (195)
20 PRK11036 putative S-adenosyl-L 99.7 4.3E-17 9.3E-22 146.2 10.2 104 157-268 44-148 (255)
21 TIGR02752 MenG_heptapren 2-hep 99.7 1.2E-16 2.7E-21 140.4 12.0 107 155-270 43-152 (231)
22 PRK10258 biotin biosynthesis p 99.7 2E-16 4.3E-21 141.1 13.1 99 157-269 42-140 (251)
23 TIGR00740 methyltransferase, p 99.7 2.2E-16 4.8E-21 140.1 12.4 107 156-270 52-162 (239)
24 TIGR03587 Pse_Me-ase pseudamin 99.7 8.3E-16 1.8E-20 134.0 14.3 99 156-269 42-142 (204)
25 PRK01683 trans-aconitate 2-met 99.7 4.9E-16 1.1E-20 139.1 12.6 99 155-268 29-129 (258)
26 PLN02336 phosphoethanolamine N 99.7 7.4E-16 1.6E-20 149.6 14.6 106 155-269 264-369 (475)
27 PRK05785 hypothetical protein; 99.7 8.8E-16 1.9E-20 135.8 13.6 90 157-263 51-141 (226)
28 PRK12335 tellurite resistance 99.7 4.9E-16 1.1E-20 141.9 11.8 103 157-268 120-222 (287)
29 COG2813 RsmC 16S RNA G1207 met 99.7 2.2E-15 4.8E-20 137.0 15.7 214 35-268 37-265 (300)
30 PF13489 Methyltransf_23: Meth 99.7 5.5E-16 1.2E-20 127.5 10.3 96 156-270 21-116 (161)
31 PF02353 CMAS: Mycolic acid cy 99.7 1.7E-15 3.7E-20 137.7 14.5 107 154-268 59-165 (273)
32 PRK11873 arsM arsenite S-adeno 99.6 9.5E-16 2.1E-20 138.4 11.7 107 155-269 75-183 (272)
33 PLN02336 phosphoethanolamine N 99.6 1.1E-15 2.4E-20 148.4 12.9 105 157-270 37-143 (475)
34 KOG1540 Ubiquinone biosynthesi 99.6 2.5E-15 5.5E-20 133.0 13.2 122 140-269 86-214 (296)
35 PF05401 NodS: Nodulation prot 99.6 1.1E-15 2.3E-20 131.5 10.4 103 156-268 42-145 (201)
36 PF08242 Methyltransf_12: Meth 99.6 3.1E-17 6.8E-22 125.8 0.6 96 162-265 1-99 (99)
37 PF03848 TehB: Tellurite resis 99.6 1.8E-15 3.9E-20 130.5 11.5 104 156-268 29-132 (192)
38 TIGR02072 BioC biotin biosynth 99.6 2.6E-15 5.7E-20 131.3 12.4 100 157-269 34-135 (240)
39 PRK15068 tRNA mo(5)U34 methylt 99.6 1.6E-15 3.4E-20 140.9 11.2 103 157-268 122-225 (322)
40 PRK08317 hypothetical protein; 99.6 3.7E-15 7.9E-20 130.1 12.6 105 155-269 17-124 (241)
41 TIGR03840 TMPT_Se_Te thiopurin 99.6 7.4E-15 1.6E-19 128.9 13.9 109 157-266 34-149 (213)
42 PRK06202 hypothetical protein; 99.6 1.8E-15 4E-20 133.6 10.0 101 156-267 59-164 (232)
43 COG2230 Cfa Cyclopropane fatty 99.6 4E-15 8.6E-20 134.8 12.3 107 154-268 69-175 (283)
44 TIGR00452 methyltransferase, p 99.6 2.5E-15 5.3E-20 139.0 11.1 105 156-268 120-224 (314)
45 smart00138 MeTrc Methyltransfe 99.6 4.9E-15 1.1E-19 134.0 12.4 112 156-268 98-241 (264)
46 PLN02490 MPBQ/MSBQ methyltrans 99.6 4.4E-15 9.5E-20 138.6 11.5 102 157-269 113-215 (340)
47 smart00828 PKS_MT Methyltransf 99.6 5.8E-15 1.3E-19 129.2 11.6 101 160-269 2-104 (224)
48 PRK15001 SAM-dependent 23S rib 99.6 7.2E-14 1.6E-18 132.2 19.7 207 35-268 106-339 (378)
49 COG4106 Tam Trans-aconitate me 99.6 2.8E-15 6.1E-20 129.9 8.4 99 155-268 28-128 (257)
50 PRK06922 hypothetical protein; 99.6 1.4E-14 3.1E-19 143.7 13.4 108 156-271 417-539 (677)
51 PRK00107 gidB 16S rRNA methylt 99.6 6.5E-14 1.4E-18 120.6 14.8 101 156-269 44-145 (187)
52 PRK11705 cyclopropane fatty ac 99.6 2.1E-14 4.5E-19 136.4 12.3 103 155-269 165-267 (383)
53 PRK00216 ubiE ubiquinone/menaq 99.6 3.4E-14 7.3E-19 124.5 12.5 106 157-269 51-158 (239)
54 PRK13255 thiopurine S-methyltr 99.6 5.5E-14 1.2E-18 123.8 12.7 109 156-265 36-151 (218)
55 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 5.3E-14 1.1E-18 122.0 11.7 103 156-269 38-143 (223)
56 TIGR02021 BchM-ChlM magnesium 99.5 6.4E-14 1.4E-18 122.6 12.2 103 156-267 54-156 (219)
57 KOG4300 Predicted methyltransf 99.5 1.9E-14 4.2E-19 123.9 8.0 106 156-269 75-182 (252)
58 TIGR00138 gidB 16S rRNA methyl 99.5 6.4E-14 1.4E-18 120.0 10.6 98 158-269 43-142 (181)
59 TIGR02469 CbiT precorrin-6Y C5 99.5 2.3E-13 5E-18 107.2 12.8 101 156-268 18-121 (124)
60 PRK05134 bifunctional 3-demeth 99.5 1.8E-13 4E-18 120.5 13.2 104 156-269 47-151 (233)
61 PLN02585 magnesium protoporphy 99.5 1.5E-13 3.2E-18 127.3 12.9 105 157-267 144-248 (315)
62 TIGR02716 C20_methyl_CrtF C-20 99.5 1.2E-13 2.6E-18 127.0 12.2 107 155-270 147-255 (306)
63 PF05175 MTS: Methyltransferas 99.5 2.4E-13 5.2E-18 115.0 12.8 118 135-267 16-138 (170)
64 PRK00121 trmB tRNA (guanine-N( 99.5 5E-14 1.1E-18 122.4 8.6 105 157-268 40-155 (202)
65 TIGR00537 hemK_rel_arch HemK-r 99.5 2.5E-13 5.4E-18 115.4 12.0 103 157-269 19-140 (179)
66 PRK07580 Mg-protoporphyrin IX 99.5 2.1E-13 4.6E-18 119.4 11.8 101 156-265 62-162 (230)
67 PRK11088 rrmA 23S rRNA methylt 99.5 1.8E-13 3.9E-18 124.0 11.6 92 157-269 85-181 (272)
68 TIGR01983 UbiG ubiquinone bios 99.5 2.3E-13 5.1E-18 118.8 10.8 104 157-269 45-149 (224)
69 PRK13944 protein-L-isoaspartat 99.4 6.6E-13 1.4E-17 115.6 11.1 99 155-267 70-171 (205)
70 TIGR03438 probable methyltrans 99.4 9.5E-13 2.1E-17 121.1 12.4 108 156-268 62-176 (301)
71 PLN03075 nicotianamine synthas 99.4 8.1E-13 1.8E-17 120.9 11.6 107 157-268 123-232 (296)
72 PRK08287 cobalt-precorrin-6Y C 99.4 1.5E-12 3.3E-17 111.3 12.4 101 155-269 29-131 (187)
73 TIGR02081 metW methionine bios 99.4 6.4E-13 1.4E-17 114.4 10.0 91 157-262 13-105 (194)
74 TIGR00080 pimt protein-L-isoas 99.4 9.2E-13 2E-17 115.3 10.8 99 155-268 75-176 (215)
75 PRK13942 protein-L-isoaspartat 99.4 1.3E-12 2.8E-17 114.4 11.5 99 155-268 74-175 (212)
76 TIGR00091 tRNA (guanine-N(7)-) 99.4 6.6E-13 1.4E-17 114.6 8.6 105 157-268 16-131 (194)
77 cd02440 AdoMet_MTases S-adenos 99.4 5.9E-12 1.3E-16 93.6 10.4 102 160-268 1-103 (107)
78 PRK13256 thiopurine S-methyltr 99.4 7.2E-12 1.6E-16 110.8 12.3 111 156-267 42-161 (226)
79 PRK00312 pcm protein-L-isoaspa 99.4 7.3E-12 1.6E-16 109.1 12.0 99 155-268 76-174 (212)
80 PLN02232 ubiquinone biosynthes 99.3 3.1E-12 6.7E-17 107.3 8.5 81 184-269 1-81 (160)
81 TIGR00406 prmA ribosomal prote 99.3 7.9E-12 1.7E-16 114.4 11.8 100 157-269 159-259 (288)
82 PF13659 Methyltransf_26: Meth 99.3 3.2E-12 6.9E-17 100.3 7.6 104 159-268 2-114 (117)
83 PF08003 Methyltransf_9: Prote 99.3 5.9E-12 1.3E-16 114.8 10.0 101 157-267 115-217 (315)
84 PRK04266 fibrillarin; Provisio 99.3 1.3E-11 2.9E-16 109.3 11.4 98 155-267 70-174 (226)
85 PRK14967 putative methyltransf 99.3 1.2E-11 2.6E-16 108.9 11.0 105 155-268 34-158 (223)
86 PRK11188 rrmJ 23S rRNA methylt 99.3 1E-11 2.3E-16 108.6 10.0 96 156-268 50-164 (209)
87 PRK00377 cbiT cobalt-precorrin 99.3 1.5E-11 3.1E-16 106.4 10.7 103 155-267 38-143 (198)
88 PF07021 MetW: Methionine bios 99.3 1.3E-11 2.8E-16 106.0 9.4 94 156-267 12-107 (193)
89 PRK00811 spermidine synthase; 99.3 2.1E-11 4.6E-16 111.3 10.9 112 156-268 75-190 (283)
90 PF00891 Methyltransf_2: O-met 99.3 1.6E-11 3.4E-16 109.0 9.6 100 155-271 98-201 (241)
91 KOG3010 Methyltransferase [Gen 99.3 1.4E-11 3.1E-16 108.5 8.6 97 160-265 36-133 (261)
92 TIGR03534 RF_mod_PrmC protein- 99.3 4.1E-11 8.8E-16 106.2 11.5 104 157-268 87-216 (251)
93 PRK00517 prmA ribosomal protei 99.3 3.8E-11 8.2E-16 107.6 10.7 95 156-269 118-213 (250)
94 TIGR01177 conserved hypothetic 99.2 4.2E-11 9E-16 111.5 10.9 106 155-267 180-292 (329)
95 smart00650 rADc Ribosomal RNA 99.2 4E-11 8.8E-16 101.0 9.8 102 155-268 11-112 (169)
96 PRK07402 precorrin-6B methylas 99.2 7.7E-11 1.7E-15 101.6 11.7 102 155-269 38-142 (196)
97 TIGR03533 L3_gln_methyl protei 99.2 6.4E-11 1.4E-15 108.2 11.7 104 157-267 121-249 (284)
98 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.2E-10 2.5E-15 110.4 13.6 105 157-268 122-234 (390)
99 PRK14968 putative methyltransf 99.2 1E-10 2.2E-15 98.9 11.6 106 157-268 23-147 (188)
100 PF03291 Pox_MCEL: mRNA cappin 99.2 8.2E-11 1.8E-15 109.7 11.5 112 157-268 62-185 (331)
101 COG4976 Predicted methyltransf 99.2 2.6E-12 5.6E-17 112.5 1.3 102 156-271 124-228 (287)
102 TIGR00536 hemK_fam HemK family 99.2 1.6E-10 3.4E-15 105.5 12.9 102 159-267 116-242 (284)
103 KOG1271 Methyltransferases [Ge 99.2 8.7E-11 1.9E-15 99.8 10.0 104 160-268 70-180 (227)
104 KOG2361 Predicted methyltransf 99.2 4.1E-11 8.9E-16 105.7 8.2 143 107-269 33-183 (264)
105 PRK13943 protein-L-isoaspartat 99.2 6.8E-11 1.5E-15 109.9 10.1 99 155-268 78-179 (322)
106 PF05219 DREV: DREV methyltran 99.2 1.3E-10 2.8E-15 104.0 10.5 94 157-268 94-187 (265)
107 PRK11805 N5-glutamine S-adenos 99.2 1.3E-10 2.9E-15 107.3 11.1 102 159-267 135-261 (307)
108 TIGR00438 rrmJ cell division p 99.2 8.8E-11 1.9E-15 100.6 8.9 96 155-267 30-144 (188)
109 KOG1541 Predicted protein carb 99.2 1.2E-10 2.6E-15 101.5 9.7 100 157-268 50-159 (270)
110 COG2518 Pcm Protein-L-isoaspar 99.2 2.1E-10 4.7E-15 99.8 11.1 99 155-268 70-168 (209)
111 PRK09328 N5-glutamine S-adenos 99.2 3.2E-10 6.8E-15 102.1 12.0 105 156-268 107-237 (275)
112 PRK04457 spermidine synthase; 99.2 1.6E-10 3.4E-15 104.5 9.7 105 157-267 66-175 (262)
113 COG4123 Predicted O-methyltran 99.2 1.8E-10 4E-15 102.8 9.9 107 156-268 43-169 (248)
114 PRK14966 unknown domain/N5-glu 99.2 4.9E-10 1.1E-14 107.0 13.2 104 157-267 251-379 (423)
115 PHA03411 putative methyltransf 99.1 2.5E-10 5.5E-15 103.4 10.5 98 157-266 64-180 (279)
116 COG2242 CobL Precorrin-6B meth 99.1 4.2E-10 9.2E-15 96.1 11.0 102 155-269 32-135 (187)
117 PF05724 TPMT: Thiopurine S-me 99.1 3.3E-10 7.3E-15 99.8 10.5 110 155-265 35-151 (218)
118 PTZ00146 fibrillarin; Provisio 99.1 5E-10 1.1E-14 102.4 11.9 102 154-268 129-236 (293)
119 PLN02366 spermidine synthase 99.1 6.5E-10 1.4E-14 102.8 12.3 109 156-267 90-204 (308)
120 PRK01581 speE spermidine synth 99.1 7E-10 1.5E-14 104.1 11.7 112 156-269 149-268 (374)
121 TIGR00417 speE spermidine synt 99.1 3.9E-10 8.4E-15 102.3 9.6 110 157-268 72-185 (270)
122 PF01135 PCMT: Protein-L-isoas 99.1 1.4E-10 3.1E-15 101.5 6.2 98 155-267 70-170 (209)
123 TIGR03704 PrmC_rel_meth putati 99.1 7.2E-10 1.6E-14 99.6 10.8 101 158-268 87-215 (251)
124 COG2264 PrmA Ribosomal protein 99.1 8.1E-10 1.8E-14 101.2 10.7 100 157-268 162-262 (300)
125 PRK14904 16S rRNA methyltransf 99.1 1.5E-09 3.2E-14 105.1 13.1 107 155-268 248-376 (445)
126 PF01739 CheR: CheR methyltran 99.1 1.3E-09 2.8E-14 94.6 11.3 112 157-268 31-174 (196)
127 PLN02781 Probable caffeoyl-CoA 99.1 9.4E-10 2E-14 97.9 10.6 112 139-267 57-176 (234)
128 PRK14901 16S rRNA methyltransf 99.1 1.2E-09 2.7E-14 105.4 12.2 108 155-268 250-383 (434)
129 PF06325 PrmA: Ribosomal prote 99.1 6.1E-10 1.3E-14 102.3 9.3 98 156-268 160-258 (295)
130 PRK10901 16S rRNA methyltransf 99.0 2.4E-09 5.1E-14 103.2 13.0 106 155-268 242-371 (427)
131 KOG2940 Predicted methyltransf 99.0 4E-10 8.7E-15 98.9 6.5 100 157-266 72-171 (325)
132 TIGR00563 rsmB ribosomal RNA s 99.0 2.3E-09 5.1E-14 103.2 12.5 108 155-268 236-367 (426)
133 PRK03612 spermidine synthase; 99.0 1.4E-09 2.9E-14 107.4 11.0 111 156-268 296-414 (521)
134 PRK14903 16S rRNA methyltransf 99.0 2.3E-09 5E-14 103.5 12.1 108 155-268 235-365 (431)
135 PHA03412 putative methyltransf 99.0 1.6E-09 3.6E-14 96.2 10.1 96 158-265 50-159 (241)
136 PRK14902 16S rRNA methyltransf 99.0 3E-09 6.6E-14 102.9 12.4 106 156-267 249-377 (444)
137 TIGR00446 nop2p NOL1/NOP2/sun 99.0 3.1E-09 6.6E-14 96.1 11.5 108 155-268 69-198 (264)
138 COG2890 HemK Methylase of poly 99.0 3.2E-09 7E-14 96.9 10.8 100 160-270 113-239 (280)
139 PRK01544 bifunctional N5-gluta 99.0 2.5E-09 5.5E-14 105.1 10.8 104 158-267 139-267 (506)
140 KOG1975 mRNA cap methyltransfe 99.0 1.8E-09 3.9E-14 98.9 8.6 129 136-268 100-236 (389)
141 PRK13168 rumA 23S rRNA m(5)U19 99.0 4.7E-09 1E-13 101.6 11.6 100 156-268 296-399 (443)
142 PRK03522 rumB 23S rRNA methylu 99.0 4.4E-09 9.5E-14 97.4 10.6 100 157-268 173-273 (315)
143 PRK10909 rsmD 16S rRNA m(2)G96 98.9 4.2E-09 9.2E-14 91.6 8.1 103 157-268 53-158 (199)
144 PRK10611 chemotaxis methyltran 98.9 6.6E-09 1.4E-13 95.1 9.7 111 158-268 116-261 (287)
145 PRK11783 rlmL 23S rRNA m(2)G24 98.9 4.7E-09 1E-13 107.0 9.1 106 157-268 538-655 (702)
146 PRK15128 23S rRNA m(5)C1962 me 98.9 8.5E-09 1.8E-13 98.5 10.2 105 157-267 220-337 (396)
147 PRK00274 ksgA 16S ribosomal RN 98.9 9.4E-09 2E-13 93.4 8.9 87 155-252 40-126 (272)
148 PRK14896 ksgA 16S ribosomal RN 98.8 1.8E-08 3.9E-13 90.8 10.2 81 155-247 27-107 (258)
149 PF01596 Methyltransf_3: O-met 98.8 8E-09 1.7E-13 90.3 7.5 112 140-269 35-155 (205)
150 PLN02476 O-methyltransferase 98.8 2.1E-08 4.6E-13 91.3 10.6 111 139-267 107-226 (278)
151 TIGR00755 ksgA dimethyladenosi 98.8 2.1E-08 4.5E-13 90.0 10.3 86 155-252 27-115 (253)
152 TIGR00479 rumA 23S rRNA (uraci 98.8 2.5E-08 5.3E-13 96.1 10.0 101 156-268 291-395 (431)
153 COG4122 Predicted O-methyltran 98.8 4.1E-08 8.8E-13 86.5 10.3 115 136-267 45-164 (219)
154 KOG3045 Predicted RNA methylas 98.8 6.6E-09 1.4E-13 92.7 5.1 86 156-269 179-264 (325)
155 KOG1499 Protein arginine N-met 98.8 1.7E-08 3.7E-13 93.5 7.9 105 155-266 58-164 (346)
156 COG2263 Predicted RNA methylas 98.8 2.8E-08 6.1E-13 85.1 7.9 72 156-238 44-116 (198)
157 TIGR02085 meth_trns_rumB 23S r 98.8 5.9E-08 1.3E-12 92.0 10.9 101 157-269 233-334 (374)
158 KOG2899 Predicted methyltransf 98.7 6.4E-08 1.4E-12 85.8 10.1 109 155-268 56-208 (288)
159 PF10294 Methyltransf_16: Puta 98.7 4.4E-08 9.5E-13 83.2 8.9 107 155-268 43-155 (173)
160 PLN02823 spermine synthase 98.7 1.2E-07 2.5E-12 88.8 12.2 107 157-268 103-219 (336)
161 PTZ00338 dimethyladenosine tra 98.7 4.3E-08 9.3E-13 90.2 8.8 89 155-252 34-122 (294)
162 PLN02672 methionine S-methyltr 98.7 8E-08 1.7E-12 101.1 11.5 109 158-267 119-276 (1082)
163 COG2519 GCD14 tRNA(1-methylade 98.7 1E-07 2.2E-12 85.0 10.6 102 154-268 91-194 (256)
164 PLN02589 caffeoyl-CoA O-methyl 98.7 9.9E-08 2.1E-12 85.7 10.2 111 139-267 68-188 (247)
165 PF05148 Methyltransf_8: Hypot 98.7 2.7E-08 5.8E-13 86.6 6.0 88 156-269 71-158 (219)
166 PF06080 DUF938: Protein of un 98.7 1.6E-07 3.5E-12 81.7 10.8 104 160-269 28-141 (204)
167 COG3963 Phospholipid N-methylt 98.7 1.5E-07 3.2E-12 79.2 9.9 101 155-266 46-153 (194)
168 PF02390 Methyltransf_4: Putat 98.7 1.1E-07 2.5E-12 82.4 9.7 102 160-268 20-132 (195)
169 PF05185 PRMT5: PRMT5 arginine 98.6 1.7E-07 3.8E-12 90.8 9.2 102 158-266 187-294 (448)
170 PRK00536 speE spermidine synth 98.6 2.7E-07 5.9E-12 83.5 9.7 100 156-268 71-170 (262)
171 TIGR00478 tly hemolysin TlyA f 98.6 3.5E-07 7.6E-12 81.2 10.1 92 157-266 75-168 (228)
172 COG0500 SmtA SAM-dependent met 98.5 1.2E-06 2.7E-11 67.2 11.1 99 161-270 52-156 (257)
173 PRK04148 hypothetical protein; 98.5 9.8E-07 2.1E-11 72.0 10.6 85 157-260 16-102 (134)
174 PF12147 Methyltransf_20: Puta 98.5 1E-06 2.3E-11 80.1 11.8 134 130-268 107-248 (311)
175 TIGR00095 RNA methyltransferas 98.5 4.1E-07 8.9E-12 78.4 8.7 104 157-268 49-158 (189)
176 COG0421 SpeE Spermidine syntha 98.5 5.5E-07 1.2E-11 82.3 9.9 109 157-268 76-189 (282)
177 COG1352 CheR Methylase of chem 98.5 8.8E-07 1.9E-11 80.4 11.1 111 157-268 96-240 (268)
178 PF09243 Rsm22: Mitochondrial 98.5 6.3E-07 1.4E-11 81.6 10.2 106 156-270 32-140 (274)
179 TIGR02143 trmA_only tRNA (urac 98.5 6.9E-07 1.5E-11 84.2 10.2 96 159-268 199-310 (353)
180 KOG2904 Predicted methyltransf 98.5 4.3E-07 9.2E-12 81.9 8.0 105 156-267 147-283 (328)
181 PRK05031 tRNA (uracil-5-)-meth 98.5 7.3E-07 1.6E-11 84.3 9.9 96 159-268 208-319 (362)
182 KOG1500 Protein arginine N-met 98.4 1.6E-06 3.4E-11 80.2 10.7 103 156-266 176-279 (517)
183 PF08704 GCD14: tRNA methyltra 98.4 1.2E-06 2.6E-11 78.7 9.5 101 155-267 38-144 (247)
184 COG0220 Predicted S-adenosylme 98.4 1.2E-06 2.5E-11 77.8 9.1 100 159-268 50-163 (227)
185 PF01564 Spermine_synth: Sperm 98.4 6.1E-07 1.3E-11 80.5 6.5 110 156-268 75-190 (246)
186 COG0030 KsgA Dimethyladenosine 98.4 1.7E-06 3.7E-11 78.0 9.1 88 155-252 28-116 (259)
187 PF08123 DOT1: Histone methyla 98.3 1.6E-06 3.4E-11 75.9 7.7 114 155-271 40-160 (205)
188 TIGR03439 methyl_EasF probable 98.3 1.2E-05 2.7E-10 74.7 14.0 108 156-269 75-197 (319)
189 PF03141 Methyltransf_29: Puta 98.3 6.4E-07 1.4E-11 86.7 5.6 99 159-269 119-219 (506)
190 PF01170 UPF0020: Putative RNA 98.3 1.3E-06 2.8E-11 74.7 6.4 109 155-269 26-151 (179)
191 PRK11727 23S rRNA mA1618 methy 98.3 3.4E-06 7.4E-11 78.5 9.7 81 157-241 114-200 (321)
192 KOG3987 Uncharacterized conser 98.3 4E-07 8.6E-12 79.1 3.0 95 156-268 111-206 (288)
193 KOG0820 Ribosomal RNA adenine 98.3 3.1E-06 6.7E-11 76.3 8.5 78 153-238 54-131 (315)
194 KOG1269 SAM-dependent methyltr 98.3 9.3E-07 2E-11 83.5 5.4 109 155-270 108-216 (364)
195 PRK04338 N(2),N(2)-dimethylgua 98.3 2.3E-06 5E-11 81.5 8.0 98 159-268 59-157 (382)
196 PF03602 Cons_hypoth95: Conser 98.3 1.3E-06 2.9E-11 75.0 5.5 105 157-268 42-152 (183)
197 KOG1661 Protein-L-isoaspartate 98.3 2.8E-06 6.1E-11 74.0 7.2 103 156-267 81-191 (237)
198 COG1041 Predicted DNA modifica 98.2 7.8E-06 1.7E-10 76.3 10.6 107 155-268 195-309 (347)
199 PF07942 N2227: N2227-like pro 98.2 9.8E-06 2.1E-10 73.6 10.8 113 156-271 55-204 (270)
200 PF02475 Met_10: Met-10+ like- 98.2 3.1E-06 6.6E-11 73.8 6.4 97 156-265 100-198 (200)
201 PF02527 GidB: rRNA small subu 98.2 2.1E-05 4.5E-10 67.7 11.4 94 160-267 51-146 (184)
202 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.2 1.3E-06 2.9E-11 78.7 4.1 114 156-269 55-199 (256)
203 KOG3420 Predicted RNA methylas 98.2 1.9E-06 4E-11 71.1 4.2 79 156-241 47-125 (185)
204 PRK11933 yebU rRNA (cytosine-C 98.1 2.7E-05 6E-10 76.0 11.8 106 155-266 111-239 (470)
205 PF10672 Methyltrans_SAM: S-ad 98.1 8.6E-06 1.9E-10 74.7 7.7 121 133-268 109-237 (286)
206 COG1092 Predicted SAM-dependen 98.1 1.6E-05 3.5E-10 75.7 9.6 107 158-269 218-336 (393)
207 PRK01544 bifunctional N5-gluta 98.1 1.1E-05 2.3E-10 79.6 8.7 105 157-268 347-461 (506)
208 COG4076 Predicted RNA methylas 98.1 8.3E-06 1.8E-10 70.0 6.7 101 159-268 34-134 (252)
209 PF09445 Methyltransf_15: RNA 98.1 2.9E-06 6.2E-11 71.6 3.8 72 160-237 2-76 (163)
210 PF11968 DUF3321: Putative met 98.1 9.5E-06 2.1E-10 71.1 7.2 88 158-268 52-148 (219)
211 PRK00050 16S rRNA m(4)C1402 me 98.1 4E-06 8.7E-11 77.2 5.1 84 156-247 18-109 (296)
212 PF00398 RrnaAD: Ribosomal RNA 98.0 3.9E-05 8.4E-10 69.3 10.3 80 155-244 28-110 (262)
213 PF05958 tRNA_U5-meth_tr: tRNA 98.0 1.7E-05 3.7E-10 74.8 7.2 58 160-224 199-256 (352)
214 KOG1331 Predicted methyltransf 98.0 6.2E-06 1.3E-10 74.8 4.0 96 156-267 44-141 (293)
215 COG2521 Predicted archaeal met 97.9 1E-05 2.2E-10 71.6 4.5 108 155-267 132-243 (287)
216 COG0742 N6-adenine-specific me 97.9 4.9E-05 1.1E-09 65.4 8.4 107 156-269 42-154 (187)
217 PF04672 Methyltransf_19: S-ad 97.9 6.2E-05 1.3E-09 68.1 9.0 126 135-269 49-190 (267)
218 KOG1663 O-methyltransferase [S 97.9 0.00014 3E-09 64.3 10.5 112 140-268 63-182 (237)
219 COG0357 GidB Predicted S-adeno 97.8 0.00021 4.6E-09 62.9 11.1 93 158-266 68-165 (215)
220 COG2265 TrmA SAM-dependent met 97.8 5.3E-05 1.2E-09 73.3 8.0 75 155-236 291-368 (432)
221 PF13679 Methyltransf_32: Meth 97.8 0.00011 2.3E-09 60.2 8.2 92 156-251 24-120 (141)
222 TIGR00308 TRM1 tRNA(guanine-26 97.8 6E-05 1.3E-09 71.7 7.1 98 159-268 46-146 (374)
223 KOG3191 Predicted N6-DNA-methy 97.7 0.00014 3.1E-09 62.1 8.2 103 158-268 44-167 (209)
224 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00024 5.3E-09 72.7 10.9 105 157-266 190-344 (702)
225 PRK11760 putative 23S rRNA C24 97.7 0.00019 4.1E-09 67.2 8.7 88 155-262 209-296 (357)
226 PF01728 FtsJ: FtsJ-like methy 97.7 1.8E-05 3.8E-10 67.1 1.8 94 157-268 23-138 (181)
227 TIGR02987 met_A_Alw26 type II 97.7 0.00018 3.9E-09 71.2 8.9 75 157-237 31-119 (524)
228 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.00026 5.6E-09 65.1 9.3 107 155-265 44-179 (311)
229 COG2520 Predicted methyltransf 97.6 0.00022 4.8E-09 66.8 8.6 177 50-269 108-289 (341)
230 KOG2352 Predicted spermine/spe 97.6 0.0003 6.5E-09 68.2 9.6 101 160-267 51-159 (482)
231 COG4262 Predicted spermidine s 97.6 0.00037 7.9E-09 65.5 9.2 108 157-269 289-407 (508)
232 TIGR01444 fkbM_fam methyltrans 97.6 0.00016 3.5E-09 58.4 6.2 56 160-222 1-58 (143)
233 COG4627 Uncharacterized protei 97.5 4.4E-05 9.5E-10 63.7 1.7 54 214-267 31-84 (185)
234 PF03059 NAS: Nicotianamine sy 97.5 0.00046 9.9E-09 63.0 8.1 107 157-268 120-229 (276)
235 COG0116 Predicted N6-adenine-s 97.4 0.0011 2.4E-08 62.9 10.5 106 156-267 190-342 (381)
236 PF01269 Fibrillarin: Fibrilla 97.3 0.0025 5.3E-08 56.3 10.0 97 154-267 70-176 (229)
237 COG0144 Sun tRNA and rRNA cyto 97.2 0.0051 1.1E-07 58.1 11.8 106 155-267 154-286 (355)
238 COG0293 FtsJ 23S rRNA methylas 97.2 0.0027 5.9E-08 55.4 8.9 96 155-268 43-158 (205)
239 KOG1709 Guanidinoacetate methy 97.1 0.0035 7.6E-08 55.2 9.4 100 156-265 100-202 (271)
240 COG5459 Predicted rRNA methyla 97.1 0.00066 1.4E-08 63.5 4.7 111 156-270 112-226 (484)
241 COG3897 Predicted methyltransf 97.1 0.0015 3.2E-08 56.6 6.4 98 155-266 77-175 (218)
242 COG1189 Predicted rRNA methyla 97.1 0.0022 4.8E-08 57.1 7.7 96 156-266 78-175 (245)
243 KOG2187 tRNA uracil-5-methyltr 97.0 0.00099 2.1E-08 65.0 5.7 74 141-224 370-443 (534)
244 KOG2798 Putative trehalase [Ca 97.0 0.0034 7.3E-08 58.0 8.2 112 157-271 150-298 (369)
245 PF13578 Methyltransf_24: Meth 96.9 0.00041 8.9E-09 53.4 1.8 99 162-269 1-105 (106)
246 PF04816 DUF633: Family of unk 96.8 0.0034 7.3E-08 55.0 6.8 103 161-271 1-124 (205)
247 KOG3115 Methyltransferase-like 96.8 0.0059 1.3E-07 53.3 7.8 110 156-268 59-182 (249)
248 KOG2730 Methylase [General fun 96.8 0.001 2.2E-08 58.6 3.0 74 158-237 95-172 (263)
249 PF03141 Methyltransf_29: Puta 96.8 0.003 6.6E-08 61.6 6.4 103 157-270 365-468 (506)
250 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.6 0.0086 1.9E-07 54.9 8.3 107 155-267 83-217 (283)
251 PRK10742 putative methyltransf 96.6 0.0043 9.3E-08 55.8 6.1 76 160-236 91-170 (250)
252 PHA01634 hypothetical protein 96.5 0.011 2.5E-07 47.9 6.9 45 157-201 28-72 (156)
253 COG4798 Predicted methyltransf 96.4 0.011 2.5E-07 51.3 7.1 104 154-269 45-166 (238)
254 KOG2539 Mitochondrial/chloropl 96.4 0.012 2.6E-07 57.0 7.6 113 156-271 199-317 (491)
255 KOG3201 Uncharacterized conser 96.2 0.0049 1.1E-07 52.0 3.6 105 157-267 29-138 (201)
256 KOG1562 Spermidine synthase [A 96.2 0.011 2.4E-07 54.3 5.9 112 155-269 119-236 (337)
257 PLN02668 indole-3-acetate carb 96.1 0.023 5.1E-07 54.3 8.3 26 220-245 152-177 (386)
258 TIGR00006 S-adenosyl-methyltra 96.1 0.016 3.5E-07 53.7 6.7 85 156-247 19-111 (305)
259 PF06859 Bin3: Bicoid-interact 96.0 0.0057 1.2E-07 48.2 2.7 39 230-268 1-43 (110)
260 KOG2915 tRNA(1-methyladenosine 96.0 0.09 1.9E-06 47.9 10.6 77 155-237 103-184 (314)
261 KOG2793 Putative N2,N2-dimethy 95.9 0.034 7.3E-07 50.1 7.8 107 157-267 86-197 (248)
262 PF03492 Methyltransf_7: SAM d 95.9 0.012 2.7E-07 55.1 5.1 89 156-244 15-121 (334)
263 KOG1501 Arginine N-methyltrans 95.8 0.019 4.2E-07 55.3 6.0 96 159-259 68-164 (636)
264 PF05971 Methyltransf_10: Prot 95.6 0.064 1.4E-06 49.6 8.6 82 157-242 102-189 (299)
265 PF11312 DUF3115: Protein of u 95.1 0.11 2.4E-06 48.1 8.4 113 157-270 86-243 (315)
266 PF04445 SAM_MT: Putative SAM- 95.1 0.032 7E-07 49.8 4.7 78 159-237 77-158 (234)
267 PF06962 rRNA_methylase: Putat 95.1 0.077 1.7E-06 43.7 6.6 80 182-268 1-91 (140)
268 PF02636 Methyltransf_28: Puta 95.1 0.095 2.1E-06 46.9 7.7 45 158-202 19-72 (252)
269 cd08283 FDH_like_1 Glutathione 95.1 0.096 2.1E-06 49.5 8.1 102 155-268 182-305 (386)
270 COG1889 NOP1 Fibrillarin-like 95.0 0.28 6E-06 43.0 10.0 105 149-267 68-178 (231)
271 PRK09424 pntA NAD(P) transhydr 95.0 0.24 5.1E-06 49.2 10.9 99 155-268 162-284 (509)
272 PF07091 FmrO: Ribosomal RNA m 94.7 0.12 2.6E-06 46.6 7.3 81 155-243 103-184 (251)
273 cd00315 Cyt_C5_DNA_methylase C 94.4 0.094 2E-06 47.7 6.0 67 160-238 2-70 (275)
274 COG2384 Predicted SAM-dependen 94.3 0.64 1.4E-05 41.1 10.7 75 158-238 17-93 (226)
275 COG1064 AdhP Zn-dependent alco 94.1 0.26 5.6E-06 46.4 8.4 94 154-268 163-258 (339)
276 PF07757 AdoMet_MTase: Predict 93.8 0.14 3E-06 40.4 5.1 47 138-188 42-88 (112)
277 PRK09880 L-idonate 5-dehydroge 93.8 0.37 8E-06 44.6 8.8 96 156-268 168-265 (343)
278 cd08254 hydroxyacyl_CoA_DH 6-h 93.7 0.67 1.4E-05 42.0 10.4 93 155-268 163-262 (338)
279 TIGR00027 mthyl_TIGR00027 meth 93.2 1.4 3.1E-05 39.8 11.4 104 159-267 83-195 (260)
280 PF01795 Methyltransf_5: MraW 93.1 0.17 3.6E-06 47.1 5.3 85 155-246 18-111 (310)
281 TIGR00561 pntA NAD(P) transhyd 93.1 0.41 9E-06 47.5 8.3 99 155-268 161-283 (511)
282 KOG4589 Cell division protein 92.9 0.22 4.7E-06 43.2 5.3 33 155-188 67-102 (232)
283 PF01555 N6_N4_Mtase: DNA meth 92.6 0.35 7.5E-06 41.3 6.3 54 139-198 178-231 (231)
284 COG1565 Uncharacterized conser 92.5 0.26 5.6E-06 46.6 5.7 48 155-202 75-131 (370)
285 COG4301 Uncharacterized conser 92.2 0.87 1.9E-05 41.2 8.3 109 157-270 78-194 (321)
286 PF04989 CmcI: Cephalosporin h 92.1 0.41 9E-06 41.9 6.1 102 157-269 32-147 (206)
287 KOG4058 Uncharacterized conser 91.9 0.48 1E-05 39.7 6.0 76 156-239 71-147 (199)
288 PRK11524 putative methyltransf 91.9 0.55 1.2E-05 42.8 7.0 56 140-201 196-251 (284)
289 COG0275 Predicted S-adenosylme 91.7 0.36 7.7E-06 44.7 5.5 63 155-224 21-85 (314)
290 cd08230 glucose_DH Glucose deh 91.7 1.1 2.4E-05 41.5 9.0 94 156-268 171-268 (355)
291 KOG2651 rRNA adenine N-6-methy 91.4 0.59 1.3E-05 44.6 6.6 43 156-198 152-194 (476)
292 PF01861 DUF43: Protein of unk 91.3 2.6 5.6E-05 37.9 10.4 96 157-263 44-142 (243)
293 KOG2920 Predicted methyltransf 91.1 0.38 8.2E-06 44.0 4.9 111 155-267 114-232 (282)
294 PF11899 DUF3419: Protein of u 90.9 0.29 6.3E-06 46.8 4.3 58 211-268 274-333 (380)
295 cd08232 idonate-5-DH L-idonate 90.5 1.3 2.8E-05 40.5 8.2 95 157-268 165-261 (339)
296 KOG2198 tRNA cytosine-5-methyl 90.5 2.4 5.2E-05 40.3 9.8 108 154-267 152-294 (375)
297 TIGR00675 dcm DNA-methyltransf 90.5 0.82 1.8E-05 42.4 6.8 63 161-236 1-65 (315)
298 COG0686 Ald Alanine dehydrogen 90.2 0.79 1.7E-05 42.8 6.2 100 157-268 167-267 (371)
299 PRK13699 putative methylase; P 90.0 1.2 2.5E-05 39.5 7.0 46 156-202 162-207 (227)
300 COG1063 Tdh Threonine dehydrog 89.0 4 8.6E-05 38.3 10.3 95 157-268 168-268 (350)
301 cd05188 MDR Medium chain reduc 88.9 3 6.5E-05 36.0 8.8 96 156-268 133-231 (271)
302 PRK11524 putative methyltransf 88.8 0.32 7E-06 44.3 2.7 57 212-268 7-79 (284)
303 PF10354 DUF2431: Domain of un 88.6 2.3 5E-05 35.8 7.6 97 164-268 3-124 (166)
304 PF02254 TrkA_N: TrkA-N domain 88.2 4 8.7E-05 31.2 8.3 84 166-267 4-94 (116)
305 cd08245 CAD Cinnamyl alcohol d 87.9 5.2 0.00011 36.2 10.1 95 155-268 160-255 (330)
306 KOG1122 tRNA and rRNA cytosine 87.9 3.2 7E-05 40.2 8.7 105 155-267 239-369 (460)
307 PF00107 ADH_zinc_N: Zinc-bind 87.8 3.6 7.7E-05 32.0 7.9 82 167-268 1-88 (130)
308 TIGR00518 alaDH alanine dehydr 87.0 1.3 2.8E-05 42.2 5.6 100 157-268 166-266 (370)
309 COG0270 Dcm Site-specific DNA 86.7 3 6.5E-05 38.8 7.9 69 159-238 4-75 (328)
310 cd08234 threonine_DH_like L-th 85.6 9.3 0.0002 34.6 10.4 94 155-268 157-256 (334)
311 KOG0821 Predicted ribosomal RN 85.4 1.1 2.5E-05 39.9 4.0 64 155-225 48-111 (326)
312 COG2933 Predicted SAM-dependen 84.3 3.9 8.5E-05 37.5 7.0 71 154-238 208-278 (358)
313 PF02005 TRM: N2,N2-dimethylgu 84.1 2.5 5.4E-05 40.4 6.1 101 157-268 49-153 (377)
314 COG3129 Predicted SAM-dependen 84.1 4.4 9.5E-05 36.5 7.1 95 142-242 64-165 (292)
315 TIGR02822 adh_fam_2 zinc-bindi 83.9 10 0.00022 34.9 10.0 89 155-267 163-252 (329)
316 KOG0822 Protein kinase inhibit 83.7 5.4 0.00012 39.8 8.1 103 158-267 368-476 (649)
317 PF03269 DUF268: Caenorhabditi 83.3 0.94 2E-05 38.4 2.5 40 229-268 62-110 (177)
318 KOG3924 Putative protein methy 83.0 3.5 7.5E-05 39.6 6.4 114 155-272 190-311 (419)
319 PLN03154 putative allyl alcoho 83.0 5.6 0.00012 37.0 7.9 97 155-268 156-257 (348)
320 COG3510 CmcI Cephalosporin hyd 82.7 8.7 0.00019 33.6 8.2 103 157-272 69-183 (237)
321 TIGR01202 bchC 2-desacetyl-2-h 82.5 6.7 0.00014 35.7 8.1 84 157-267 144-229 (308)
322 KOG2078 tRNA modification enzy 82.3 0.82 1.8E-05 44.2 2.0 64 156-224 248-311 (495)
323 KOG1227 Putative methyltransfe 82.0 0.8 1.7E-05 42.4 1.7 102 157-270 194-298 (351)
324 PF07279 DUF1442: Protein of u 82.0 16 0.00034 32.3 9.7 116 137-271 28-150 (218)
325 KOG0024 Sorbitol dehydrogenase 82.0 7.5 0.00016 36.5 8.0 97 154-269 166-273 (354)
326 COG1867 TRM1 N2,N2-dimethylgua 81.5 4.4 9.6E-05 38.6 6.5 99 158-268 53-153 (380)
327 PRK13699 putative methylase; P 81.1 1.2 2.5E-05 39.5 2.4 20 248-267 51-70 (227)
328 PF00145 DNA_methylase: C-5 cy 80.9 4.5 9.8E-05 36.5 6.4 63 160-236 2-67 (335)
329 cd08255 2-desacetyl-2-hydroxye 80.5 15 0.00032 32.3 9.4 93 155-268 95-189 (277)
330 PRK05708 2-dehydropantoate 2-r 80.4 19 0.0004 33.1 10.3 99 159-269 3-104 (305)
331 cd08281 liver_ADH_like1 Zinc-d 80.3 6.2 0.00013 36.8 7.2 97 155-268 189-289 (371)
332 cd08261 Zn_ADH7 Alcohol dehydr 80.3 7.9 0.00017 35.3 7.8 96 155-268 157-257 (337)
333 TIGR03451 mycoS_dep_FDH mycoth 79.1 19 0.00042 33.3 10.1 96 155-268 174-275 (358)
334 COG1748 LYS9 Saccharopine dehy 78.8 7.3 0.00016 37.4 7.2 70 160-239 3-77 (389)
335 cd08237 ribitol-5-phosphate_DH 78.8 13 0.00028 34.3 8.8 90 156-267 162-254 (341)
336 COG4017 Uncharacterized protei 78.4 6.6 0.00014 34.4 6.0 72 156-246 43-115 (254)
337 PRK08306 dipicolinate synthase 78.3 6.4 0.00014 36.2 6.5 89 157-268 151-240 (296)
338 KOG1596 Fibrillarin and relate 78.1 12 0.00025 34.0 7.7 96 155-268 154-260 (317)
339 cd00401 AdoHcyase S-adenosyl-L 77.9 7.9 0.00017 37.5 7.2 86 156-267 200-287 (413)
340 KOG2352 Predicted spermine/spe 77.9 1.7 3.7E-05 42.6 2.6 105 156-268 294-415 (482)
341 COG0286 HsdM Type I restrictio 77.8 17 0.00037 35.9 9.7 104 157-265 186-322 (489)
342 PF11599 AviRa: RRNA methyltra 77.7 5.4 0.00012 35.4 5.4 113 156-268 50-213 (246)
343 cd08242 MDR_like Medium chain 77.7 23 0.00049 31.9 9.9 91 155-268 153-244 (319)
344 PRK07417 arogenate dehydrogena 77.5 16 0.00035 32.9 8.8 88 160-269 2-91 (279)
345 cd05285 sorbitol_DH Sorbitol d 77.5 25 0.00055 32.1 10.3 96 155-268 160-264 (343)
346 PRK03562 glutathione-regulated 77.5 17 0.00037 37.0 9.8 91 159-267 401-496 (621)
347 TIGR02825 B4_12hDH leukotriene 77.2 14 0.00031 33.5 8.5 96 155-268 136-236 (325)
348 PTZ00357 methyltransferase; Pr 77.2 7.2 0.00016 40.3 6.7 105 159-264 702-830 (1072)
349 TIGR03201 dearomat_had 6-hydro 77.1 14 0.00031 34.1 8.5 44 155-198 164-208 (349)
350 cd08295 double_bond_reductase_ 77.0 12 0.00027 34.1 8.0 97 155-268 149-250 (338)
351 COG0604 Qor NADPH:quinone redu 76.6 11 0.00025 35.0 7.7 96 155-268 140-240 (326)
352 PF07652 Flavi_DEAD: Flaviviru 76.6 22 0.00047 29.6 8.4 102 159-262 6-125 (148)
353 PF05711 TylF: Macrocin-O-meth 76.5 11 0.00024 33.9 7.3 102 157-269 74-212 (248)
354 cd08239 THR_DH_like L-threonin 76.3 7.9 0.00017 35.3 6.5 96 155-268 161-261 (339)
355 PLN02586 probable cinnamyl alc 76.2 12 0.00025 35.0 7.7 94 156-268 182-277 (360)
356 COG1255 Uncharacterized protei 76.0 15 0.00032 29.5 6.9 82 157-261 13-96 (129)
357 PRK10458 DNA cytosine methylas 75.5 17 0.00036 35.9 8.8 42 158-200 88-130 (467)
358 PF05050 Methyltransf_21: Meth 75.5 5.3 0.00012 32.1 4.6 37 163-199 1-42 (167)
359 cd08293 PTGR2 Prostaglandin re 75.5 11 0.00025 34.3 7.3 92 159-267 156-252 (345)
360 cd05278 FDH_like Formaldehyde 75.4 13 0.00028 33.9 7.6 95 155-267 165-265 (347)
361 COG3315 O-Methyltransferase in 75.1 35 0.00075 31.5 10.3 106 159-269 94-209 (297)
362 PF05206 TRM13: Methyltransfer 74.3 6.7 0.00015 35.6 5.3 33 155-188 16-55 (259)
363 PRK10669 putative cation:proto 73.4 28 0.00061 34.7 10.0 91 159-267 418-513 (558)
364 PF04072 LCM: Leucine carboxyl 73.0 14 0.00031 31.1 6.9 92 160-255 81-182 (183)
365 TIGR03366 HpnZ_proposed putati 72.9 23 0.0005 31.5 8.6 95 156-268 119-217 (280)
366 cd08236 sugar_DH NAD(P)-depend 72.8 12 0.00026 34.1 6.8 96 155-268 157-257 (343)
367 cd08294 leukotriene_B4_DH_like 72.7 16 0.00034 32.9 7.5 96 155-268 141-240 (329)
368 PF02558 ApbA: Ketopantoate re 72.2 12 0.00026 30.0 6.0 98 162-270 2-102 (151)
369 PRK03659 glutathione-regulated 71.5 19 0.00042 36.4 8.5 91 159-267 401-496 (601)
370 PRK06522 2-dehydropantoate 2-r 70.9 38 0.00083 30.3 9.6 97 160-268 2-99 (304)
371 PRK09496 trkA potassium transp 70.9 49 0.0011 31.6 10.8 88 160-266 2-96 (453)
372 PRK09496 trkA potassium transp 70.8 58 0.0013 31.1 11.3 68 157-237 230-304 (453)
373 PLN02514 cinnamyl-alcohol dehy 70.4 27 0.00059 32.4 8.7 95 156-268 179-274 (357)
374 cd08285 NADP_ADH NADP(H)-depen 69.6 53 0.0012 30.0 10.4 95 155-267 164-264 (351)
375 PLN02740 Alcohol dehydrogenase 69.5 24 0.00052 33.1 8.2 96 155-267 196-298 (381)
376 PRK05786 fabG 3-ketoacyl-(acyl 69.4 50 0.0011 28.1 9.6 105 158-270 5-136 (238)
377 PRK07533 enoyl-(acyl carrier p 69.1 39 0.00085 29.6 9.0 75 158-240 10-98 (258)
378 PRK10309 galactitol-1-phosphat 68.6 23 0.00049 32.5 7.7 96 155-268 158-259 (347)
379 PF03686 UPF0146: Uncharacteri 68.3 8.5 0.00018 31.2 4.1 80 157-258 13-93 (127)
380 PRK12921 2-dehydropantoate 2-r 68.3 51 0.0011 29.7 9.8 99 160-268 2-101 (305)
381 PF08468 MTS_N: Methyltransfer 68.0 7.4 0.00016 32.5 3.9 43 34-78 68-110 (155)
382 PF03514 GRAS: GRAS domain fam 67.5 22 0.00048 33.8 7.5 108 157-268 110-243 (374)
383 PRK07819 3-hydroxybutyryl-CoA 66.0 15 0.00032 33.5 5.8 102 160-270 7-122 (286)
384 PF01210 NAD_Gly3P_dh_N: NAD-d 66.0 22 0.00049 29.1 6.4 98 161-267 2-101 (157)
385 PRK08324 short chain dehydroge 65.6 45 0.00098 34.2 9.8 105 158-270 422-558 (681)
386 PRK07502 cyclohexadienyl dehyd 65.5 44 0.00095 30.5 8.8 89 159-268 7-99 (307)
387 cd01842 SGNH_hydrolase_like_5 65.4 8.8 0.00019 33.0 3.8 40 227-266 47-96 (183)
388 PF02153 PDH: Prephenate dehyd 64.8 17 0.00036 32.6 5.8 77 172-270 2-80 (258)
389 PRK08293 3-hydroxybutyryl-CoA 64.3 12 0.00025 34.0 4.7 103 160-270 5-121 (287)
390 PLN02827 Alcohol dehydrogenase 63.9 24 0.00052 33.2 7.0 96 155-267 191-293 (378)
391 PRK01747 mnmC bifunctional tRN 63.9 19 0.00041 36.8 6.6 52 213-266 148-203 (662)
392 PRK06079 enoyl-(acyl carrier p 63.2 77 0.0017 27.6 9.7 73 158-240 7-93 (252)
393 PRK08277 D-mannonate oxidoredu 63.1 66 0.0014 28.2 9.4 75 158-239 10-96 (278)
394 PRK07109 short chain dehydroge 62.5 61 0.0013 29.9 9.3 73 159-238 9-93 (334)
395 cd08296 CAD_like Cinnamyl alco 62.4 30 0.00066 31.5 7.2 96 155-268 161-258 (333)
396 TIGR00936 ahcY adenosylhomocys 61.4 29 0.00063 33.6 7.0 86 156-267 193-280 (406)
397 PRK07806 short chain dehydroge 61.3 52 0.0011 28.2 8.2 104 158-268 6-133 (248)
398 PRK08655 prephenate dehydrogen 61.1 44 0.00096 32.5 8.4 90 160-270 2-93 (437)
399 cd08231 MDR_TM0436_like Hypoth 60.8 97 0.0021 28.4 10.4 94 157-268 177-279 (361)
400 PRK06249 2-dehydropantoate 2-r 60.5 45 0.00097 30.5 8.0 100 158-268 5-105 (313)
401 COG5379 BtaA S-adenosylmethion 60.2 14 0.0003 34.5 4.4 71 187-268 293-365 (414)
402 cd08298 CAD2 Cinnamyl alcohol 59.0 1.1E+02 0.0025 27.3 10.4 90 155-268 165-255 (329)
403 COG0541 Ffh Signal recognition 58.9 44 0.00096 32.7 7.7 107 156-272 98-224 (451)
404 PRK12939 short chain dehydroge 58.6 78 0.0017 26.9 8.8 75 158-239 7-93 (250)
405 TIGR00692 tdh L-threonine 3-de 58.3 1.1E+02 0.0023 27.9 10.1 95 156-268 160-260 (340)
406 PRK06139 short chain dehydroge 58.2 38 0.00082 31.4 7.1 75 158-239 7-93 (330)
407 PRK09260 3-hydroxybutyryl-CoA 58.2 44 0.00095 30.2 7.4 99 160-267 3-115 (288)
408 cd08263 Zn_ADH10 Alcohol dehyd 58.0 99 0.0022 28.5 10.0 93 156-268 186-286 (367)
409 PRK07985 oxidoreductase; Provi 57.9 1.1E+02 0.0023 27.6 9.9 106 158-270 49-186 (294)
410 PRK06718 precorrin-2 dehydroge 57.3 1.2E+02 0.0027 26.0 9.8 66 157-238 9-78 (202)
411 PRK05872 short chain dehydroge 57.2 1E+02 0.0022 27.6 9.6 75 158-240 9-95 (296)
412 PLN02178 cinnamyl-alcohol dehy 56.5 48 0.001 31.2 7.6 93 157-268 178-272 (375)
413 PF02737 3HCDH_N: 3-hydroxyacy 56.1 25 0.00054 29.7 5.1 100 161-268 2-113 (180)
414 PRK07984 enoyl-(acyl carrier p 56.0 1.1E+02 0.0024 27.0 9.5 72 159-239 7-93 (262)
415 cd08233 butanediol_DH_like (2R 55.7 52 0.0011 30.1 7.6 96 155-268 170-271 (351)
416 PRK05476 S-adenosyl-L-homocyst 55.4 24 0.00052 34.3 5.4 85 157-267 211-297 (425)
417 cd05281 TDH Threonine dehydrog 55.4 1.2E+02 0.0026 27.5 9.9 95 156-268 162-261 (341)
418 PF01488 Shikimate_DH: Shikima 55.2 18 0.0004 28.9 3.9 75 157-242 11-87 (135)
419 cd08300 alcohol_DH_class_III c 54.9 72 0.0016 29.6 8.5 97 155-268 184-287 (368)
420 cd08279 Zn_ADH_class_III Class 54.5 1.3E+02 0.0028 27.7 10.1 93 155-268 180-281 (363)
421 cd08241 QOR1 Quinone oxidoredu 54.2 1.3E+02 0.0029 26.2 9.8 94 155-267 137-236 (323)
422 PRK05875 short chain dehydroge 54.1 1.2E+02 0.0026 26.5 9.4 76 158-238 7-94 (276)
423 KOG1099 SAM-dependent methyltr 54.0 37 0.00081 30.6 5.9 90 160-267 44-161 (294)
424 PF02826 2-Hacid_dh_C: D-isome 53.4 18 0.0004 30.3 3.8 38 157-194 35-73 (178)
425 cd08270 MDR4 Medium chain dehy 53.1 1.6E+02 0.0035 25.9 10.3 88 157-268 132-221 (305)
426 cd05566 PTS_IIB_galactitol PTS 52.9 42 0.00091 24.5 5.3 16 244-259 74-89 (89)
427 cd08274 MDR9 Medium chain dehy 52.6 1.6E+02 0.0034 26.6 10.2 92 155-268 175-272 (350)
428 cd05283 CAD1 Cinnamyl alcohol 52.1 1E+02 0.0022 28.0 8.8 94 156-268 168-262 (337)
429 PTZ00075 Adenosylhomocysteinas 51.5 34 0.00073 33.9 5.7 86 157-268 253-340 (476)
430 PRK07889 enoyl-(acyl carrier p 51.5 1.3E+02 0.0028 26.2 9.2 73 158-240 7-95 (256)
431 COG2910 Putative NADH-flavin r 51.4 44 0.00095 29.2 5.7 60 166-240 7-72 (211)
432 PRK06500 short chain dehydroge 51.3 1.5E+02 0.0033 25.1 9.6 70 159-238 7-88 (249)
433 TIGR00872 gnd_rel 6-phosphoglu 51.3 55 0.0012 29.8 6.9 88 161-268 3-92 (298)
434 cd08277 liver_alcohol_DH_like 51.2 87 0.0019 29.0 8.4 95 155-268 182-285 (365)
435 PLN02494 adenosylhomocysteinas 51.2 30 0.00064 34.2 5.3 87 157-268 253-340 (477)
436 PRK00094 gpsA NAD(P)H-dependen 50.8 1.3E+02 0.0027 27.3 9.2 99 160-268 3-104 (325)
437 cd08238 sorbose_phosphate_red 50.5 2.2E+02 0.0048 26.9 11.2 46 155-200 173-223 (410)
438 TIGR02356 adenyl_thiF thiazole 50.1 27 0.00057 30.1 4.4 32 158-189 21-54 (202)
439 cd05289 MDR_like_2 alcohol deh 50.1 1.3E+02 0.0028 26.1 9.0 92 155-268 142-237 (309)
440 PRK08085 gluconate 5-dehydroge 49.8 1.7E+02 0.0036 25.2 9.9 74 159-239 10-95 (254)
441 KOG2671 Putative RNA methylase 49.4 12 0.00025 35.7 2.1 77 155-236 206-290 (421)
442 PRK03369 murD UDP-N-acetylmura 49.2 65 0.0014 31.6 7.5 69 157-240 11-80 (488)
443 PRK07688 thiamine/molybdopteri 49.2 68 0.0015 30.1 7.3 32 158-189 24-57 (339)
444 PRK07370 enoyl-(acyl carrier p 49.2 1.1E+02 0.0024 26.7 8.4 30 158-187 6-39 (258)
445 PRK08594 enoyl-(acyl carrier p 49.1 1.8E+02 0.0039 25.4 10.6 72 158-238 7-95 (257)
446 TIGR02819 fdhA_non_GSH formald 49.1 87 0.0019 29.7 8.1 102 155-267 183-297 (393)
447 PRK07831 short chain dehydroge 48.5 95 0.0021 27.0 7.8 77 158-239 17-106 (262)
448 PRK05854 short chain dehydroge 48.5 1.7E+02 0.0036 26.6 9.7 77 158-239 14-102 (313)
449 PRK06505 enoyl-(acyl carrier p 48.2 1.5E+02 0.0032 26.3 9.1 75 158-240 7-95 (271)
450 PRK14620 NAD(P)H-dependent gly 48.0 1.5E+02 0.0032 27.1 9.3 100 160-267 2-104 (326)
451 TIGR02853 spore_dpaA dipicolin 47.9 53 0.0011 30.0 6.2 90 157-269 150-240 (287)
452 COG0569 TrkA K+ transport syst 47.4 80 0.0017 27.7 7.1 67 160-237 2-73 (225)
453 PF06690 DUF1188: Protein of u 47.4 61 0.0013 29.2 6.2 67 160-245 44-111 (252)
454 PRK06719 precorrin-2 dehydroge 47.3 1.6E+02 0.0034 24.3 8.4 79 157-257 12-92 (157)
455 PF03807 F420_oxidored: NADP o 46.7 42 0.00091 24.5 4.5 81 167-268 6-93 (96)
456 PF01262 AlaDh_PNT_C: Alanine 46.2 7.7 0.00017 32.3 0.4 43 157-199 19-62 (168)
457 KOG1201 Hydroxysteroid 17-beta 45.4 97 0.0021 28.8 7.4 85 157-250 37-140 (300)
458 COG0287 TyrA Prephenate dehydr 45.3 1.1E+02 0.0023 28.0 7.8 90 160-270 5-99 (279)
459 PRK11154 fadJ multifunctional 44.6 63 0.0014 33.5 6.8 105 157-269 308-425 (708)
460 PRK06701 short chain dehydroge 44.4 1.3E+02 0.0029 26.8 8.3 74 158-239 46-133 (290)
461 PRK12823 benD 1,6-dihydroxycyc 44.3 2.1E+02 0.0045 24.6 10.0 73 158-238 8-92 (260)
462 cd05213 NAD_bind_Glutamyl_tRNA 44.0 72 0.0016 29.4 6.5 38 157-194 177-216 (311)
463 PRK08415 enoyl-(acyl carrier p 43.9 2.3E+02 0.005 25.1 10.1 74 159-240 6-93 (274)
464 cd08240 6_hydroxyhexanoate_dh_ 43.7 2.4E+02 0.0051 25.6 9.9 92 157-268 175-273 (350)
465 PRK12490 6-phosphogluconate de 43.6 62 0.0014 29.4 6.0 87 162-268 4-93 (299)
466 cd08286 FDH_like_ADH2 formalde 43.6 1.3E+02 0.0029 27.1 8.3 95 155-267 164-264 (345)
467 PRK05396 tdh L-threonine 3-deh 43.4 1.1E+02 0.0024 27.7 7.7 94 157-268 163-262 (341)
468 TIGR01470 cysG_Nterm siroheme 43.1 90 0.002 27.0 6.6 65 158-237 9-76 (205)
469 PRK00258 aroE shikimate 5-dehy 43.0 98 0.0021 27.9 7.1 74 157-242 122-197 (278)
470 cd08266 Zn_ADH_like1 Alcohol d 42.8 2.4E+02 0.0052 24.9 9.7 95 155-268 164-264 (342)
471 COG0771 MurD UDP-N-acetylmuram 42.8 68 0.0015 31.5 6.3 72 158-240 7-79 (448)
472 cd08267 MDR1 Medium chain dehy 42.6 1.6E+02 0.0035 25.8 8.5 42 155-197 141-184 (319)
473 cd08265 Zn_ADH3 Alcohol dehydr 42.6 1.6E+02 0.0035 27.4 8.8 97 155-268 201-306 (384)
474 cd05565 PTS_IIB_lactose PTS_II 42.3 49 0.0011 25.4 4.3 69 164-264 5-73 (99)
475 TIGR02441 fa_ox_alpha_mit fatt 42.3 58 0.0013 34.0 6.1 103 157-268 334-449 (737)
476 PRK12742 oxidoreductase; Provi 42.3 2.1E+02 0.0045 24.1 9.6 70 158-239 6-84 (237)
477 cd08260 Zn_ADH6 Alcohol dehydr 42.2 93 0.002 28.2 7.0 96 155-267 163-262 (345)
478 PRK05562 precorrin-2 dehydroge 41.9 2.5E+02 0.0054 24.9 9.8 66 157-237 24-92 (223)
479 PRK05565 fabG 3-ketoacyl-(acyl 41.9 1.8E+02 0.004 24.5 8.5 72 160-239 7-92 (247)
480 PRK01438 murD UDP-N-acetylmura 41.9 94 0.002 30.2 7.3 71 158-240 16-88 (480)
481 PLN02545 3-hydroxybutyryl-CoA 41.8 2.3E+02 0.005 25.5 9.5 98 160-266 6-116 (295)
482 PRK08217 fabG 3-ketoacyl-(acyl 41.7 1.1E+02 0.0023 26.1 7.0 74 158-238 5-90 (253)
483 PF03721 UDPG_MGDP_dh_N: UDP-g 41.7 52 0.0011 28.0 4.9 106 160-270 2-120 (185)
484 KOG0023 Alcohol dehydrogenase, 41.6 64 0.0014 30.5 5.6 47 155-201 179-226 (360)
485 cd01065 NAD_bind_Shikimate_DH 41.5 80 0.0017 25.1 5.7 43 157-200 18-63 (155)
486 PRK12549 shikimate 5-dehydroge 41.3 82 0.0018 28.7 6.4 43 157-199 126-170 (284)
487 PRK08267 short chain dehydroge 40.9 1.1E+02 0.0024 26.4 7.1 71 160-239 3-86 (260)
488 PRK05693 short chain dehydroge 40.9 1.9E+02 0.0042 25.2 8.6 67 160-239 3-81 (274)
489 PRK12475 thiamine/molybdopteri 40.8 56 0.0012 30.6 5.3 33 158-190 24-58 (338)
490 cd01487 E1_ThiF_like E1_ThiF_l 40.7 65 0.0014 27.0 5.2 31 160-190 1-33 (174)
491 PRK08229 2-dehydropantoate 2-r 40.6 2E+02 0.0044 26.3 9.0 96 160-268 4-106 (341)
492 cd08246 crotonyl_coA_red croto 40.4 89 0.0019 29.2 6.7 44 155-198 191-236 (393)
493 KOG1209 1-Acyl dihydroxyaceton 40.4 2.8E+02 0.006 25.0 9.1 41 157-197 6-50 (289)
494 COG1893 ApbA Ketopantoate redu 40.3 1.8E+02 0.0038 26.9 8.5 99 160-269 2-101 (307)
495 KOG1253 tRNA methyltransferase 40.1 25 0.00054 34.9 2.9 102 156-268 108-215 (525)
496 PRK08339 short chain dehydroge 40.0 1.2E+02 0.0026 26.6 7.1 75 158-238 8-93 (263)
497 PLN02702 L-idonate 5-dehydroge 39.8 2.8E+02 0.006 25.5 9.8 97 155-268 179-284 (364)
498 PRK12744 short chain dehydroge 39.8 2.3E+02 0.005 24.4 8.9 100 159-266 9-142 (257)
499 PRK06223 malate dehydrogenase; 39.8 1.8E+02 0.0039 26.4 8.4 34 160-193 4-39 (307)
500 PTZ00117 malate dehydrogenase; 39.7 1.9E+02 0.004 26.8 8.6 36 158-193 5-42 (319)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=100.00 E-value=1.1e-35 Score=258.14 Aligned_cols=162 Identities=51% Similarity=1.026 Sum_probs=130.8
Q ss_pred hhHHHHHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC
Q 024100 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (272)
Q Consensus 102 ~~~~y~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~ 181 (272)
+..||.++.+||++++++++||+|||.++|..|+.+|+.||..+.....+ +.....++||||||+||+|..+|.+.|.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999988764321 1345679999999999999999989999
Q ss_pred cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhccc
Q 024100 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIAR 261 (272)
Q Consensus 182 ~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkp 261 (272)
.|++||+++.+++.|++.+.. ......++++..+++|.|++++||+||++||+.||||++++.||++|+..|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~------~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGK------DNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCC------GGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhcc------cCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999998753 23467899999999999877899999999999999999999999999999999
Q ss_pred CcEEEEecCC
Q 024100 262 SGTFLLSHSL 271 (272)
Q Consensus 262 gG~liv~E~~ 271 (272)
+|.|++.||+
T Consensus 154 ~G~IvvKEN~ 163 (218)
T PF05891_consen 154 NGVIVVKENV 163 (218)
T ss_dssp EEEEEEEEEE
T ss_pred CcEEEEEecC
Confidence 9999999985
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.84 E-value=2.1e-20 Score=165.95 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=95.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||||||||.++..+ ++.. .+|+++|+|+.||+.|++++... ...+++|+.+|++++|+++++||+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~-~k~~g~g~v~~~D~s~~ML~~a~~k~~~~------~~~~i~fv~~dAe~LPf~D~sFD~ 122 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLL-AKSVGTGEVVGLDISESMLEVAREKLKKK------GVQNVEFVVGDAENLPFPDNSFDA 122 (238)
T ss_pred CCCCEEEEecCCccHHHHHH-HHhcCCceEEEEECCHHHHHHHHHHhhcc------CccceEEEEechhhCCCCCCccCE
Confidence 36889999999999999977 5665 69999999999999999998543 233499999999999999999999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|.+++.|++++|.+ ++|++++|+|||||.+++.|..
T Consensus 123 vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 123 VTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred EEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcC
Confidence 99999999999888 9999999999999999998853
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.82 E-value=2.6e-20 Score=165.57 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=81.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||||.++..++.... ..|+++|+|+.|++.|++++... ...+++++++|++++++++++||
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------~~~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------GLQNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT------T--SEEEEE-BTTB--S-TT-EE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh------CCCCeeEEEcCHHHhcCCCCcee
Confidence 35677999999999999997743333 48999999999999999997542 23489999999999999889999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++++.+++++|.+ +++++++|+|||||.+++.|
T Consensus 119 ~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEee
Confidence 999999999998877 99999999999999998876
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=2.9e-19 Score=134.08 Aligned_cols=94 Identities=21% Similarity=0.375 Sum_probs=80.5
Q ss_pred eEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhh
Q 024100 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240 (272)
Q Consensus 162 LDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl 240 (272)
||+|||+|..+..+ ++. ..+|+++|+|+.|++.+++... ...+.+.++|++++++++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l-~~~~~~~v~~~D~~~~~~~~~~~~~~---------~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAAL-AKRGGASVTGIDISEEMLEQARKRLK---------NEGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHH-HHTTTCEEEEEES-HHHHHHHHHHTT---------TSTEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHH-HhccCCEEEEEeCCHHHHHHHHhccc---------ccCchheeehHHhCccccccccccccccce
Confidence 89999999999988 466 8899999999999999999873 235669999999999888999999999999
Q ss_pred hhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 241 GHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 241 ~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+++.+ .+++++.|+|||||++++
T Consensus 71 ~~~~~~~--~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPE--AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSHHH--HHHHHHHHHEEEEEEEEE
T ss_pred eeccCHH--HHHHHHHHHcCcCeEEeC
Confidence 9995555 999999999999999875
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.80 E-value=6.8e-19 Score=158.80 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=91.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||||.++..+ ++. . .+|+++|+|+.|++.|+++.... ......+++++++|++++++++++|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~l-a~~~~~~~~V~gvD~S~~ml~~A~~r~~~~---~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLL-SEKVGSDGKVMGLDFSSEQLAVAASRQELK---AKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHH-HHHhCCCCEEEEEECCHHHHHHHHHHhhhh---hhccCCCeEEEEcccccCCCCCCCE
Confidence 456779999999999999977 454 3 38999999999999998775311 0112357999999999998888899
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++++++||++++. .+++++.++|+|||.+++.|
T Consensus 147 D~V~~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 147 DAITMGYGLRNVVDRL--KAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred eEEEEecccccCCCHH--HHHHHHHHHcCcCcEEEEEE
Confidence 9999999999998776 99999999999999998875
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.80 E-value=5.5e-19 Score=163.83 Aligned_cols=105 Identities=20% Similarity=0.314 Sum_probs=90.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||||||+|.++..+ ++.+.+|++||+|++|++.|+++.... ....++.|++++++++++.+++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~L-a~~g~~V~GID~s~~~i~~Ar~~~~~~-----~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPL-ARMGATVTGVDAVDKNVKIARLHADMD-----PVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhc-----CcccceeEEecCHHHhhhccCCCCEEEE
Confidence 4569999999999999977 577889999999999999999875321 1124789999999988766679999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
..+|+|++|++ .+++++.++|+|||.+++..
T Consensus 205 ~~vLeHv~d~~--~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHVANPA--EFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 99999999887 99999999999999998763
No 7
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=160.03 Aligned_cols=155 Identities=29% Similarity=0.487 Sum_probs=129.1
Q ss_pred HHHHHHHhhhhcchhhhhc-cccCCCCCcc---hhhhhHHHHHHHHHhcc-CCC-ccCCCCCeeeEeecccchHHHHHHH
Q 024100 104 QWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDR-FPN-ARNNQHLVALDCGSGIGRITKNLLI 177 (272)
Q Consensus 104 ~~y~~~~~YW~~~~~~~~~-~lggy~~~s~---~d~~~s~~~L~~ll~~~-l~~-~~~~~~~~VLDiGcGtG~~t~~LLa 177 (272)
.+|.++..||..+..+.+| ++++|.+.+. .++..+..++..+..+. ++. .++.....++|||.|+|+++..++.
T Consensus 118 ~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~ 197 (342)
T KOG3178|consen 118 QFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLS 197 (342)
T ss_pred HHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHH
Confidence 5789999999999999999 8999988666 89999999998887632 221 1234457899999999999999975
Q ss_pred hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHH
Q 024100 178 RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKE 257 (272)
Q Consensus 178 ~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r 257 (272)
.|+++++|++..+.+..+...+. +.|..+-+|+.+-.| +-|+||+.|+|||++|++.+++|++|++
T Consensus 198 -~fp~ik~infdlp~v~~~a~~~~----------~gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLknC~~ 263 (342)
T KOG3178|consen 198 -KYPHIKGINFDLPFVLAAAPYLA----------PGVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKNCKK 263 (342)
T ss_pred -hCCCCceeecCHHHHHhhhhhhc----------CCcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHHHHH
Confidence 99999999999999988888762 236777777644333 3569999999999999999999999999
Q ss_pred hcccCcEEEEecCCC
Q 024100 258 NIARSGTFLLSHSLI 272 (272)
Q Consensus 258 ~LkpgG~liv~E~~~ 272 (272)
.|+|||.|++.|+++
T Consensus 264 sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 264 SLPPGGKIIVVENVT 278 (342)
T ss_pred hCCCCCEEEEEeccC
Confidence 999999999999864
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.77 E-value=4.9e-18 Score=158.67 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=91.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||||||+|.++..++...+.+|++||+|+.|++.|+++.... ....+++|.++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~-----g~~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ-----GLSDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEcCcccCCCCCCCccEEE
Confidence 466799999999999999885334679999999999999999876432 223579999999999887778999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+++|++|.. .+|+++.++|+|||.+++.+
T Consensus 192 s~~~~~h~~d~~--~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPDKR--KFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999998766 99999999999999998764
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.76 E-value=9.5e-18 Score=151.51 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=103.1
Q ss_pred hccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhc
Q 024100 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (272)
Q Consensus 121 ~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l 200 (272)
+.+|| ...++...+.....++..+ .+.+..+|||||||+|..+..++.....+|+++|+|+.|++.|+++.
T Consensus 25 e~~~g-~~~~~~gg~~~~~~~l~~l--------~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~ 95 (263)
T PTZ00098 25 EFIFG-EDYISSGGIEATTKILSDI--------ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRN 95 (263)
T ss_pred HHHhC-CCCCCCCchHHHHHHHHhC--------CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHc
Confidence 34554 2334444444444444432 24677899999999999999775334569999999999999999886
Q ss_pred cccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 201 APENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 201 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
.. ..++.|.++|+.+.++++++||+|++..+++|++..+...+|++++++|+|||.+++.|.
T Consensus 96 ~~--------~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 96 SD--------KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred Cc--------CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 31 357999999998877767899999999999999866677999999999999999998763
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=6e-18 Score=131.92 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=87.0
Q ss_pred CCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCCCCCCcceee
Q 024100 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fDlI 234 (272)
+.+|||+|||+|.++..++ + .+.+|++||+|+.|++.|++++... ....+++|+++|+ ...... +.||+|
T Consensus 2 ~~~vLDlGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALA-RLFPGARVVGVDISPEMLEIARERAAEE-----GLSDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TCEEEEETTTTSHHHHHHH-HHHTTSEEEEEESSHHHHHHHHHHHHHT-----TTTTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCEEEEEcCcCCHHHHHHH-hcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECccccCcccC-CCCCEE
Confidence 5689999999999999885 5 6789999999999999999998321 2457999999999 444433 479999
Q ss_pred Eech-hhhhcCh-hhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQW-CIGHLTD-DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~-vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+ +++++.. ++..++++++.+.|+|||++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999 6665554 567799999999999999999864
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.75 E-value=7.4e-18 Score=145.89 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=89.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|..+..| ++.+.+|+++|+|+.|++.++++.... ...++++.+.|+.+++++ ++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~L-a~~g~~V~gvD~S~~~i~~a~~~~~~~------~~~~v~~~~~d~~~~~~~-~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYL-AANGFDVTAWDKNPMSIANLERIKAAE------NLDNLHTAVVDLNNLTFD-GEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHc------CCCcceEEecChhhCCcC-CCcCEEE
Confidence 35679999999999999987 577789999999999999999876432 234688999999887664 5799999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.++||++..+...+++++.++|+|||++++.
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999998778889999999999999986554
No 12
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.75 E-value=2.3e-17 Score=154.28 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=136.0
Q ss_pred cCCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhcc---ccc----chhhhhHHH
Q 024100 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGE---DGE----QQEKKTQWY 106 (272)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~---~~~----~~~~~~~~y 106 (272)
....+-|+.+||+|++++.+++++++.- .| ++.|++.|.+.+| .+|+..+.+...+. +.. ..+++..|-
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l-~~-g~~i~~~G~~~~g--~~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~ 150 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLL-PV-GTDIFVVGENRSG--VRSAEKMLADYAPLNKIDSARRCGLYHGRLEKQ 150 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhC-CC-CCEEEEEEecccc--HHHHHHHHHHhcCccccccceeEEEEEEecccc
Confidence 3567789999999999999999999954 33 8899999999999 34555555543321 100 000111111
Q ss_pred H--HHHhhhhcchhhhhc-cccCC-CCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC-
Q 024100 107 R--EGISYWEGVEASVDG-VLGGF-GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN- 181 (272)
Q Consensus 107 ~--~~~~YW~~~~~~~~~-~lggy-~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~- 181 (272)
. ...+||..-. ..+ -+... .-++...++....++...+. ....++|||+|||+|.++..++ +.++
T Consensus 151 ~~~~~~~~~~~y~--~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~-------~~~~g~VLDlGCG~G~ls~~la-~~~p~ 220 (342)
T PRK09489 151 PVFDADKFWKEYQ--VDGLTVKTLPGVFSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSAVLA-RHSPK 220 (342)
T ss_pred CCCcccccceeee--cCCEEEEeCCCCCCCCCCCHHHHHHHHhcc-------ccCCCeEEEeccCcCHHHHHHH-HhCCC
Confidence 0 1244564221 111 00000 11223333333333433332 1234589999999999999874 6554
Q ss_pred -cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcC---hhhHHHHHHHHHH
Q 024100 182 -EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT---DDDFVSFFKRAKE 257 (272)
Q Consensus 182 -~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~---d~~~~~~l~~~~r 257 (272)
+|+++|+|+.|++.|++++... .....++..|+... .+++||+|+++..+|+.. ......+++++.+
T Consensus 221 ~~v~~vDis~~Al~~A~~nl~~n-------~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~ 291 (342)
T PRK09489 221 IRLTLSDVSAAALESSRATLAAN-------GLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVR 291 (342)
T ss_pred CEEEEEECCHHHHHHHHHHHHHc-------CCCCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHH
Confidence 8999999999999999987532 12356777776543 246899999999987632 2345689999999
Q ss_pred hcccCcEEEEe
Q 024100 258 NIARSGTFLLS 268 (272)
Q Consensus 258 ~LkpgG~liv~ 268 (272)
.|+|||.++++
T Consensus 292 ~LkpgG~L~iV 302 (342)
T PRK09489 292 HLNSGGELRIV 302 (342)
T ss_pred hcCcCCEEEEE
Confidence 99999988654
No 13
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.74 E-value=3.8e-18 Score=131.78 Aligned_cols=95 Identities=22% Similarity=0.422 Sum_probs=80.8
Q ss_pred eeEeecccchHHHHHHHhcC-----CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 161 ALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 161 VLDiGcGtG~~t~~LLa~~~-----~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
|||+|||+|+.+..++ +.+ .+++++|+|+.|++.++++... ....++|++.|+.++++..++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~-~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-------~~~~~~~~~~D~~~l~~~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA-RRFDAGPSSRVIGVDISPEMLELAKKRFSE-------DGPKVRFVQADARDLPFSDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHH-HHS-----SEEEEEES-HHHHHHHHHHSHH-------TTTTSEEEESCTTCHHHHSSSEEEEE
T ss_pred CEEeecCCcHHHHHHH-HHhhhcccceEEEEECCHHHHHHHHHhchh-------cCCceEEEECCHhHCcccCCCeeEEE
Confidence 7999999999999885 655 7999999999999999998743 23388999999999887677999999
Q ss_pred ech-hhhhcChhhHHHHHHHHHHhcccCc
Q 024100 236 VQW-CIGHLTDDDFVSFFKRAKENIARSG 263 (272)
Q Consensus 236 s~~-vl~hl~d~~~~~~l~~~~r~LkpgG 263 (272)
+.+ +++|+++++...+|+++.++|+|||
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 965 4999999999999999999999998
No 14
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.73 E-value=4.7e-18 Score=149.61 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=91.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+..+|||+|||.|.++..+ |+.+..|+++|.|+++|+.|+..... ..-+++|.+...+++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~m-Ar~Ga~VtgiD~se~~I~~Ak~ha~e-------~gv~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPL-ARLGASVTGIDASEKPIEVAKLHALE-------SGVNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHH-HHCCCeeEEecCChHHHHHHHHhhhh-------ccccccchhhhHHHHHhcCCCccEEEE
Confidence 5679999999999999999 69999999999999999999987643 344678999998888655579999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+|+|++|++ .|++.|.+.+||||.++++
T Consensus 131 mEVlEHv~dp~--~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 131 MEVLEHVPDPE--SFLRACAKLVKPGGILFLS 160 (243)
T ss_pred hhHHHccCCHH--HHHHHHHHHcCCCcEEEEe
Confidence 99999999999 8999999999999999876
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.73 E-value=3.5e-17 Score=135.36 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=88.4
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 232 (272)
++.+|||+|||+|.++..++... ..+++++|.|+.|++.|++.+... ...+++|+++|+++++ ++ +.||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------~~~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------GLDNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT------TSTTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc------cccccceEEeehhccccccC-CCee
Confidence 46699999999999999885233 458999999999999999976532 3448999999999976 43 6899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++..+++|++++. .+|+++.+.|++||.+++.+
T Consensus 76 ~I~~~~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 76 IIISNGVLHHFPDPE--KVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EEEEESTGGGTSHHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999999998887 99999999999999998765
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.73 E-value=5.3e-17 Score=145.14 Aligned_cols=109 Identities=10% Similarity=0.204 Sum_probs=91.2
Q ss_pred CCCCeeeEeecccchHHHHHHHh---cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~---~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.+..+|||+|||+|..+..++.. ...+++++|+|+.|++.|++++... ....+++++++|+.+++++ .+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-----~~~~~v~~~~~d~~~~~~~--~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVDVIEGDIRDIAIE--NAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEeCChhhCCCC--CCC
Confidence 35679999999999999877431 2358999999999999999988532 1234799999999888654 599
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++++++||+++++...+++++++.|+|||.+++.|.+
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999999998877789999999999999999998743
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=3.1e-17 Score=146.96 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=83.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.|++. ++++.++|++++. ++++||
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~-~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLA-RRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCC-CCCCce
Confidence 3466799999999999999884 55 45899999999999999752 4689999998875 346999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++.++||++++. .++++++++|+|||.+++.
T Consensus 92 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 92 VVVSNAALQWVPEHA--DLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEEehhhhhCCCHH--HHHHHHHHhCCCCcEEEEE
Confidence 999999999998766 9999999999999999875
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.71 E-value=3.1e-17 Score=145.65 Aligned_cols=105 Identities=16% Similarity=0.311 Sum_probs=86.0
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+.+|||+|||+|-++.+| ++.+.+|+|||+++.|++.|++...........-..+++|.+.++++.. +.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepL-Arlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPL-ARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhh-HhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 467999999999999999 6999999999999999999998832211000011124778888888874 359999999
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+++|+.|+. .++..|.+.|+|||.+|++
T Consensus 166 evleHV~dp~--~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 166 EVLEHVKDPQ--EFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred HHHHHHhCHH--HHHHHHHHHhCCCCceEee
Confidence 9999998887 9999999999999999875
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.71 E-value=6.3e-17 Score=139.87 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=86.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|+++..+ ++.+.+|+++|+|+.|++.++++.... .-.+.+.+.|+..++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~l-a~~g~~V~~iD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYL-SLAGYDVRAWDHNPASIASVLDMKARE-------NLPLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHH-HHCCCeEEEEECCHHHHHHHHHHHHHh-------CCCceeEeccchhcccc-CCCCEEEE
Confidence 4579999999999999977 577789999999999999998876421 12367788888766554 58999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.++||++.++...++++++++|+|||++++.+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 999999987777899999999999999866543
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.71 E-value=4.3e-17 Score=146.18 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=89.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ....+++++++|++++. ..+++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~l-a~~g~~v~~vD~s~~~l~~a~~~~~~~-----g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKL-AELGHQVILCDLSAEMIQRAKQAAEAK-----GVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHhc-----CCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 4569999999999999988 577889999999999999999987532 12357899999998764 3457999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.+++|++++. .+|+++.++|+|||.+++.
T Consensus 118 ~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVADPK--SVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEE
Confidence 999999998887 9999999999999998754
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.70 E-value=1.2e-16 Score=140.45 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=91.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..++ +. . .+|+++|+|+.|++.|++++... ...+++++++|+.++++++++|
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la-~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALA-EAVGPEGHVIGLDFSENMLSVGRQKVKDA------GLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEEechhcCCCCCCCc
Confidence 4567799999999999999774 54 2 48999999999999999987432 2357899999998887666799
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++.++++|+++.. ++++++.++|+|||.+++.|.
T Consensus 116 D~V~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYM--QVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccccCCCHH--HHHHHHHHHcCcCeEEEEEEC
Confidence 9999999999998776 999999999999999987663
No 22
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.70 E-value=2e-16 Score=141.15 Aligned_cols=99 Identities=16% Similarity=0.288 Sum_probs=86.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ +..+.+|+++|+|+.|++.|+++.. ...++++|++++++.+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYW-RERGSQVTALDLSPPMLAQARQKDA-----------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 4678999999999999977 5778899999999999999998752 347889999998877779999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+++++++.. .+|+++.++|+|||.+++..
T Consensus 110 ~~~l~~~~d~~--~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGNLS--TALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcCCHH--HHHHHHHHHcCCCeEEEEEe
Confidence 99999987776 99999999999999998763
No 23
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.69 E-value=2.2e-16 Score=140.12 Aligned_cols=107 Identities=13% Similarity=0.253 Sum_probs=90.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhc----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
.++.+|||+|||+|..+..++ +. ..+++++|+|+.|++.|++++... ....+++++++|+.+++++ .+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~-~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~--~~ 123 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSAR-RNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRHVEIK--NA 123 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHH-HhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECChhhCCCC--CC
Confidence 356699999999999999885 43 347999999999999999987532 1234689999999988754 59
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++++++||+++++...++++++++|+|||.+++.|.
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999999999888888999999999999999999874
No 24
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.68 E-value=8.3e-16 Score=134.02 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=83.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|..+..|. +. +.++++||+|+.|++.|++++ .++.+.++|+.+ ++++++||+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~-~~~~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALK-RLLPFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHH-HhCCCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccC-CCCCCCEEE
Confidence 456789999999999999885 54 568999999999999998864 246788888877 556679999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+++.+++|++.+++.++++++.+++ ++++++.|
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 99999999998777889999999997 56777665
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=4.9e-16 Score=139.06 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=85.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.|++++ .++.|+.+|+.++.+. ++||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la-~~~~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~~~~~~~-~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLV-ERWPAARITGIDSSPAMLAEARSRL-----------PDCQFVEADIASWQPP-QALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECchhccCCC-CCcc
Confidence 3466799999999999999885 54 358999999999999999875 3578999999877644 5999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++.++||++|.. .+|+++.++|+|||.+++.
T Consensus 96 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQWLPDHL--ELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChhhCCCHH--HHHHHHHHhcCCCcEEEEE
Confidence 999999999998766 9999999999999998764
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=7.4e-16 Score=149.63 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=90.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++... ...+++|.++|+.+.++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~-------~~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG-------RKCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc-------CCCceEEEEcCcccCCCCCCCEEEE
Confidence 346679999999999999977544456899999999999999887532 2347899999998877666789999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|..+++|+++++ .+|++++++|+|||.+++.+
T Consensus 337 ~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 337 YSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EECCcccccCCHH--HHHHHHHHHcCCCeEEEEEE
Confidence 9999999998877 99999999999999998875
No 27
>PRK05785 hypothetical protein; Provisional
Probab=99.67 E-value=8.8e-16 Score=135.81 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=78.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||||.++..+. +. ..+|+++|+|++|++.|+++. .++++|++++++++++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~-~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFK-KVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHH-HhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEE
Confidence 36799999999999999874 55 469999999999999998641 356889999988888999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCc
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSG 263 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG 263 (272)
+++++||++|++ +++++++|+|+|.+
T Consensus 116 ~~~~l~~~~d~~--~~l~e~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASDNIE--KVIAEFTRVSRKQV 141 (226)
T ss_pred ecChhhccCCHH--HHHHHHHHHhcCce
Confidence 999999998877 99999999999954
No 28
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=4.9e-16 Score=141.91 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=87.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++++|||+|||+|+.+..+ ++.+.+|+++|.|+.|++.++++.... ..++++.+.|+....+ +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~l-a~~g~~V~avD~s~~ai~~~~~~~~~~-------~l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYL-ALLGFDVTAVDINQQSLENLQEIAEKE-------NLNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHc-------CCceEEEEechhcccc-cCCccEEEE
Confidence 3459999999999999987 577789999999999999999886431 2268888899887665 468999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.++||++.++...+++++.++|+|||++++.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999998778889999999999999986654
No 29
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.2e-15 Score=136.98 Aligned_cols=214 Identities=17% Similarity=0.162 Sum_probs=138.5
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhccccc--chhhhhHHHHH----
Q 024100 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGE--QQEKKTQWYRE---- 108 (272)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~~~--~~~~~~~~y~~---- 108 (272)
.+.+-|+.+||.|++++.++|++.+.. .| ++.|.+-|.+.+| ..|...|-.+-.+.... ..++...||..
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~-~~-g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL-PP-GGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC-CC-CCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 678889999999999999999999966 33 7899999999999 34444444443332110 12333333321
Q ss_pred ---HHhhhhcchhhhhccccC-CCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC--c
Q 024100 109 ---GISYWEGVEASVDGVLGG-FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--E 182 (272)
Q Consensus 109 ---~~~YW~~~~~~~~~~lgg-y~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~--~ 182 (272)
...+|.......+.-|-. -+-+|...++...++|.+.+. .....+|||+|||.|.++..+ ++.++ +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~-------~~~~~~vlDlGCG~Gvlg~~l-a~~~p~~~ 184 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLP-------PDLGGKVLDLGCGYGVLGLVL-AKKSPQAK 184 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCC-------ccCCCcEEEeCCCccHHHHHH-HHhCCCCe
Confidence 123333222111100000 011445556555565555444 233459999999999999987 57776 8
Q ss_pred EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcCh--h-hHHHHHHHHHHhc
Q 024100 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD--D-DFVSFFKRAKENI 259 (272)
Q Consensus 183 v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d--~-~~~~~l~~~~r~L 259 (272)
++++|.|...++.|++++.. ....+..++..|..+-. . ++||+|+||--||-=-+ . --.+++....+.|
T Consensus 185 vtmvDvn~~Av~~ar~Nl~~------N~~~~~~v~~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L 256 (300)
T COG2813 185 LTLVDVNARAVESARKNLAA------NGVENTEVWASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHL 256 (300)
T ss_pred EEEEecCHHHHHHHHHhHHH------cCCCccEEEEecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhh
Confidence 99999999999999999853 12233356666664432 2 38999999988853211 1 1237999999999
Q ss_pred ccCcEEEEe
Q 024100 260 ARSGTFLLS 268 (272)
Q Consensus 260 kpgG~liv~ 268 (272)
++||.+.++
T Consensus 257 ~~gGeL~iV 265 (300)
T COG2813 257 KPGGELWIV 265 (300)
T ss_pred ccCCEEEEE
Confidence 999987654
No 30
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.66 E-value=5.5e-16 Score=127.52 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=78.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++.+.+++++|+|+.|++. . ++.....+.....+++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK--R--------------NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH--T--------------TSEEEEEECHTHHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh--h--------------hhhhhhhhhhhhhccccchhhHh
Confidence 56779999999999999977 6888899999999999988 1 12233333333333457999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+.+|+|++|+. .+|+++.+.|+|||++++.+.
T Consensus 84 ~~~~l~~~~d~~--~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 84 CNDVLEHLPDPE--EFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EESSGGGSSHHH--HHHHHHHHCEEEEEEEEEEEE
T ss_pred hHHHHhhcccHH--HHHHHHHHhcCCCCEEEEEEc
Confidence 999999999866 999999999999999988764
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.66 E-value=1.7e-15 Score=137.65 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=84.5
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.++.+|||||||+|.++..++.+.+.+|++|..|++..+.+++++... +....+++.+.|..+++. +||.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~-----gl~~~v~v~~~D~~~~~~---~fD~ 130 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREA-----GLEDRVEVRLQDYRDLPG---KFDR 130 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCS-----TSSSTEEEEES-GGG------S-SE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEeeccccCC---CCCE
Confidence 47889999999999999999886555889999999999999999998653 234678999999887753 8999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|-.+++|+..+.+..+|+++.++|+|||.+++.
T Consensus 131 IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 131 IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999998888889999999999999999764
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.65 E-value=9.5e-16 Score=138.43 Aligned_cols=107 Identities=21% Similarity=0.154 Sum_probs=89.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++.+|||+|||+|..+..++...++ +|+++|+|+.|++.|+++.... ...+++|..+|++++++++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------g~~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------GYTNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc------CCCCEEEEEcchhhCCCCCCcee
Confidence 456789999999999988866433333 6999999999999999986432 23578999999998877667999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|+++.+++|+++.. ++|+++.++|+|||.+++.+
T Consensus 149 ~Vi~~~v~~~~~d~~--~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 149 VIISNCVINLSPDKE--RVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEEcCcccCCCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999999987766 89999999999999998865
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=1.1e-15 Score=148.35 Aligned_cols=105 Identities=21% Similarity=0.381 Sum_probs=90.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fDlI 234 (272)
+..+|||+|||+|.++..| ++.+.+|+++|+|+.|++.+++... ...++.++++|+.. +++++++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~l-a~~~~~v~giD~s~~~l~~a~~~~~--------~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGEL-AKKAGQVIALDFIESVIKKNESING--------HYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHH-HhhCCEEEEEeCCHHHHHHHHHHhc--------cCCceEEEEecccccccCCCCCCEEEE
Confidence 4568999999999999987 5778899999999999998866421 23578999999863 45556799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+++++++|++++++..++++++++|+|||++++.|+
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999999998888999999999999999998875
No 34
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.64 E-value=2.5e-15 Score=133.02 Aligned_cols=122 Identities=14% Similarity=0.229 Sum_probs=99.6
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCC
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~-------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~ 212 (272)
+..+.++...+. .....++||++||||.++..++.... .+|++.|+|++||+.++++...... ....
T Consensus 86 RlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l---~~~~ 159 (296)
T KOG1540|consen 86 RLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL---KASS 159 (296)
T ss_pred HHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC---CcCC
Confidence 334555544443 45668999999999999998874332 5799999999999999988633211 1234
Q ss_pred ceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 213 ~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+.|+++|++++|+++++||..++.+.|.+.++++ +.+++++|+|||||.|...|
T Consensus 160 ~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 160 RVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred ceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEE
Confidence 68999999999999999999999999999999999 99999999999999998766
No 35
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.64 E-value=1.1e-15 Score=131.46 Aligned_cols=103 Identities=25% Similarity=0.379 Sum_probs=84.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
....++||+|||+|.+|..| +.+..+++++|.|+..|+.|++++.. .++|+|.+.++.++.|+ ++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~L-A~rCd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P~-~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERL-APRCDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWPE-GRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHH-GGGEEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEE
T ss_pred cccceeEecCCCccHHHHHH-HHhhCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCCC-CCeeEEE
Confidence 34568999999999999987 78899999999999999999999853 46899999999888654 7999999
Q ss_pred echhhhhcCh-hhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.+++|+++ +++..++.++.+.|+|||.+|+-
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999986 67889999999999999999864
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.64 E-value=3.1e-17 Score=125.79 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=60.8
Q ss_pred eEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCC-CCcceeeEech
Q 024100 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPE-TGRYDVIWVQW 238 (272)
Q Consensus 162 LDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~-~~~fDlIvs~~ 238 (272)
||||||+|.++..++... ..+++++|+|+.|++.|++++... ...+......+..+. ... .++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL------GNDNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC------T---EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc------CCcceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999986442 568899999999999998887543 122333333333222 111 25999999999
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
++||+.+.. .+++++++.|+|||.|
T Consensus 75 vl~~l~~~~--~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIE--AVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HH--HHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHH--HHHHHHHHHcCCCCCC
Confidence 999995555 9999999999999986
No 37
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.64 E-value=1.8e-15 Score=130.53 Aligned_cols=104 Identities=19% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+++++||+|||.|+.+..| ++.+..|+++|.|+..++.+++.... ..-.++..+.|++++.++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyL-A~~G~~VtAvD~s~~al~~l~~~a~~-------~~l~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYL-ASQGFDVTAVDISPVALEKLQRLAEE-------EGLDIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHH-HHTT-EEEEEESSHHHHHHHHHHHHH-------TT-TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHH-HHCCCeEEEEECCHHHHHHHHHHHhh-------cCceeEEEEecchhcccc-CCcCEEE
Confidence 35779999999999999977 78889999999999999998776532 223589999999998875 6899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..+++|+..+.+.++++.+.+.++|||++++.
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 999999999888889999999999999997763
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.63 E-value=2.6e-15 Score=131.25 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=86.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.+.+|||+|||+|.++..++ +.++ +++++|+|+.|++.+++.+. .++.++.+|+++.++++++||+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~-~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALL-KRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHH-HhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEE
Confidence 34689999999999999774 6554 56999999999999998752 37889999999887666799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++++++||+.+.. .++.++.++|+|||.+++.+
T Consensus 103 i~~~~l~~~~~~~--~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDDLS--QALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEhhhhhhccCHH--HHHHHHHHHcCCCcEEEEEe
Confidence 9999999997766 99999999999999998764
No 39
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.63 E-value=1.6e-15 Score=140.94 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=84.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||||||+|.++..++ ..++ .|+++|+|+.|+..++..-... ....++.|..+|++++++ +++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la-~~g~~~V~GiD~S~~~l~q~~a~~~~~-----~~~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRML-GAGAKLVVGIDPSQLFLCQFEAVRKLL-----GNDQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 46799999999999999885 5554 6999999999998654422110 113479999999999877 57999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|..+++|+.++. .+|+++++.|+|||.+++.
T Consensus 195 s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 195 SMGVLYHRRSPL--DHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ECChhhccCCHH--HHHHHHHHhcCCCcEEEEE
Confidence 999999998776 8999999999999998764
No 40
>PRK08317 hypothetical protein; Provisional
Probab=99.63 E-value=3.7e-15 Score=130.05 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=89.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..++ +.+ .+++++|+|+.+++.++++... ...++++...|++.++..+++|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a-~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELA-RRVGPEGRVVGIDRSEAMLALAKERAAG-------LGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHH-HhcCCCcEEEEEeCCHHHHHHHHHHhhC-------CCCceEEEecccccCCCCCCCc
Confidence 4567899999999999999885 543 4899999999999999987321 3457899999998877666799
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++..+++|+.++. .+++++.++|+|||.+++.+
T Consensus 89 D~v~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 89 DAVRSDRVLQHLEDPA--RALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred eEEEEechhhccCCHH--HHHHHHHHHhcCCcEEEEEe
Confidence 9999999999998877 99999999999999998765
No 41
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.62 E-value=7.4e-15 Score=128.94 Aligned_cols=109 Identities=10% Similarity=-0.029 Sum_probs=86.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC------CCCCCCceEEEEeCCCCCCCC-CC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-TG 229 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~------~~~~~~~v~~~~~d~~~~~~~-~~ 229 (272)
++.+|||+|||.|+.+..| ++++.+|++||+|+.+++.+.+........ ......+++++++|+.+++.. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~L-A~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWL-AEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHH-HhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 5579999999999999977 688999999999999999864432110000 000134789999999888643 35
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+||.|+-..+++|++.+....+++.+.++|+|||.++
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 7999999999999998888899999999999999644
No 42
>PRK06202 hypothetical protein; Provisional
Probab=99.62 E-value=1.8e-15 Score=133.63 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=80.6
Q ss_pred CCCCeeeEeecccchHHHHHHHh---cC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~---~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 230 (272)
.++.+|||+|||+|.++..|+.. .+ .+++++|+|+.|++.|+++.. ..++.+.+.+...++..+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---------~~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---------RPGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---------cCCCeEEEEecccccccCCC
Confidence 35679999999999999877421 22 389999999999999988753 23567777776666555679
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
||+|+++.++||++++++..+|+++.++++ |.+++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 999999999999999888899999999998 44443
No 43
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=4e-15 Score=134.84 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=92.7
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.++++|||||||+|.++..++.++..+|+|++.|+++.+.+++++... +...++++...|..++. ++||-
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-----gl~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-----GLEDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-----CCCcccEEEeccccccc---cccce
Confidence 47899999999999999999885444589999999999999999987543 23458999999998885 35999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|-..++|+.......+|+++++.|+|||.++..
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 99999999999877779999999999999988754
No 44
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=2.5e-15 Score=139.01 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..++......|+++|+|+.|+..++..-... ....++.+...+++++++. .+||+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~-----~~~~~v~~~~~~ie~lp~~-~~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL-----DNDKRAILEPLGIEQLHEL-YAFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh-----ccCCCeEEEECCHHHCCCC-CCcCEEE
Confidence 456799999999999999885333347999999999998754321110 1234678888999888754 4899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+.+++|+.++. .+|++++++|+|||.+++.
T Consensus 194 s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 194 SMGVLYHRKSPL--EHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EcchhhccCCHH--HHHHHHHHhcCCCCEEEEE
Confidence 999999998887 8999999999999999865
No 45
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.61 E-value=4.9e-15 Score=133.98 Aligned_cols=112 Identities=17% Similarity=0.277 Sum_probs=86.1
Q ss_pred CCCCeeeEeecccch----HHHHHHHhc-------CCcEEEEeCCHHHHHHHHHhccccCC---C---------------
Q 024100 156 NQHLVALDCGSGIGR----ITKNLLIRY-------FNEVDLLEPVSHFLDAARESLAPENH---M--------------- 206 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~----~t~~LLa~~-------~~~v~~vD~S~~mld~A~~~l~~~~~---~--------------- 206 (272)
.++.+|+|+|||||. ++..+ ++. ..+|+++|+|+.||+.|++..-.... .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l-~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLL-AETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHH-HHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 345799999999996 44433 333 23799999999999999985411000 0
Q ss_pred ---CCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 207 ---APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 207 ---~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
......+++|.+.|+.+.+++.++||+|+|.++|+|+++++..++++++++.|+|||++++.
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00011368999999998776567999999999999999888889999999999999999864
No 46
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.61 E-value=4.4e-15 Score=138.59 Aligned_cols=102 Identities=21% Similarity=0.173 Sum_probs=87.7
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+..+|||+|||+|.++..++... ..+|+++|+|+.|++.|+++.. ..+++++.+|+++.++++++||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---------~~~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LKECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---------ccCCeEEeccHHhCCCCCCceeEEE
Confidence 46799999999999999775332 3589999999999999998752 2468899999998877777999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+++|+++++ .+|+++.++|+|||.+++.+
T Consensus 184 s~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 184 SAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEE
Confidence 999999998877 89999999999999987764
No 47
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.61 E-value=5.8e-15 Score=129.25 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=85.4
Q ss_pred eeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+|||||||+|..+..++ +.+ .+|+++|+|+.+++.+++++... ....+++++..|+...+++ ++||+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la-~~~~~~~v~gid~s~~~~~~a~~~~~~~-----gl~~~i~~~~~d~~~~~~~-~~fD~I~~~ 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA-ERHPHLQLHGYTISPEQAEVGRERIRAL-----GLQGRIRIFYRDSAKDPFP-DTYDLVFGF 74 (224)
T ss_pred eEEEECCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEecccccCCCC-CCCCEeehH
Confidence 69999999999999885 544 48999999999999999987532 2345789999998665544 589999999
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+++|+.+.. .+|++++++|+|||.+++.+
T Consensus 75 ~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 75 EVIHHIKDKM--DLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHhCCCHH--HHHHHHHHHcCCCCEEEEEE
Confidence 9999997765 99999999999999998875
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.60 E-value=7.2e-14 Score=132.16 Aligned_cols=207 Identities=14% Similarity=0.175 Sum_probs=128.7
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhcccccchhhhhHHHHHHH----
Q 024100 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGI---- 110 (272)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~~~~~~~~~~~y~~~~---- 110 (272)
.+.+-|+.+|+.|+++.-++.+.++-. .++..++-|.+..|- -.+..+.-.+.+++.. .... ++++.
T Consensus 106 ~~d~vl~~~PK~~~~l~~~l~~l~~~l---~~~~~ii~g~~~k~i-~~~~~~~~~k~l~~~~----~~~~-~~kaR~~~~ 176 (378)
T PRK15001 106 QPGVVLIKVPKTLALLEQQLRALRKVV---TSDTRIIAGAKARDI-HTSTLELFEKVLGPTT----TTLA-WKKARLINC 176 (378)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhhC---CCCCEEEEEEecCCC-cHHHHHHHHHHhCccc----hhhh-hhhhhheec
Confidence 467889999999999999999887733 455556666666551 1111334444444310 1111 11111
Q ss_pred -hhhhcc---h-----------hh---hhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHH
Q 024100 111 -SYWEGV---E-----------AS---VDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRIT 172 (272)
Q Consensus 111 -~YW~~~---~-----------~~---~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t 172 (272)
-|+... + -+ ..|+ ++...++....++...+.. ....+|||+|||+|.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV------Fs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~ 243 (378)
T PRK15001 177 TFNEPPLADAPQTVSWKLEGTDWTIHNHANV------FSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIG 243 (378)
T ss_pred cCCCCCCcCCCceeEEEEcCceEEEEecCCc------cCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHH
Confidence 111100 0 00 1122 3334444444555444331 23459999999999999
Q ss_pred HHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhc---Chhh
Q 024100 173 KNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDD 247 (272)
Q Consensus 173 ~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl---~d~~ 247 (272)
..++ +.+ .+|+++|.|+.|++.|++++.... .....+++++..|..+.. ++++||+|+|+-.+|.. ++..
T Consensus 244 i~la-~~~P~~~V~~vD~S~~Av~~A~~N~~~n~---~~~~~~v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~i 318 (378)
T PRK15001 244 LTLL-DKNPQAKVVFVDESPMAVASSRLNVETNM---PEALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNV 318 (378)
T ss_pred HHHH-HhCCCCEEEEEECCHHHHHHHHHHHHHcC---cccCceEEEEEccccccC-CCCCEEEEEECcCcccCccCCHHH
Confidence 9874 654 489999999999999999874210 001236888888875432 23589999999777543 3444
Q ss_pred HHHHHHHHHHhcccCcEEEEe
Q 024100 248 FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 248 ~~~~l~~~~r~LkpgG~liv~ 268 (272)
..++|+.++++|+|||.++++
T Consensus 319 a~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 319 AWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred HHHHHHHHHHhcccCCEEEEE
Confidence 568999999999999988765
No 49
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=2.8e-15 Score=129.91 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=87.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+....+|.|+|||+|+.|..| +++++ .++|+|.|+.||+.|++++ ++.+|..+|+.++.++ ...|
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL-~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~d 94 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELL-ARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTD 94 (257)
T ss_pred ccccceeeecCCCCCHHHHHH-HHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccc
Confidence 556789999999999999955 68765 7899999999999998876 5789999999999865 5899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++-+|+.++|-- .+|.++...|.|||.+-+.
T Consensus 95 llfaNAvlqWlpdH~--~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 95 LLFANAVLQWLPDHP--ELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhhhhhhccccH--HHHHHHHHhhCCCceEEEE
Confidence 999999999998766 8999999999999998764
No 50
>PRK06922 hypothetical protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=143.65 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=88.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 231 (272)
.++.+|||+|||+|.++..+ ++.+ .+++++|+|+.|++.|+++... ...+++++++|..+++ +++++|
T Consensus 417 ~~g~rVLDIGCGTG~ls~~L-A~~~P~~kVtGIDIS~~MLe~Ararl~~-------~g~~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMI-EEETEDKRIYGIDISENVIDTLKKKKQN-------EGRSWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHhhh-------cCCCeEEEEcchHhCccccCCCCE
Confidence 35679999999999999877 4544 4999999999999999987632 2346788999988765 556799
Q ss_pred eeeEechhhhhcC-----------hhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 232 DVIWVQWCIGHLT-----------DDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 232 DlIvs~~vl~hl~-----------d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|+|++++++||+. ..+..++|++++++|+|||.+++.|..
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9999999998762 346779999999999999999998753
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=6.5e-14 Score=120.65 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=81.9
Q ss_pred CCCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+++.+|||+|||+|..+..++.. ...+|+++|+|+.|++.|+++.... ...+++++++|+++++. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~------~l~~i~~~~~d~~~~~~-~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL------GLKNVTVVHGRAEEFGQ-EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc------CCCCEEEEeccHhhCCC-CCCccEE
Confidence 34679999999999999977422 2458999999999999999987542 23459999999998876 5699999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.. .+ +..+++++.+.|+|||.+++.+
T Consensus 117 ~~~~~----~~--~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 117 TSRAV----AS--LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEccc----cC--HHHHHHHHHHhcCCCeEEEEEe
Confidence 99752 23 3489999999999999998764
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.57 E-value=2.1e-14 Score=136.35 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=87.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|.++..++...+.+|+++|+|+.|++.|+++... ..+++...|..++ +++||+|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 457789999999999999978534466999999999999999998631 2478888888765 3689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+.+.....+|+++.++|+|||.+++..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999988777799999999999999998754
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.56 E-value=3.4e-14 Score=124.46 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=89.1
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++... ....+++++.+|+.+.+.++++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----GLSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----ccccCeEEEecccccCCCCCCCccEE
Confidence 45799999999999999885433 279999999999999999987431 12357899999998877666799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++++++||+.+.. .+|+++.+.|+|||.+++.|
T Consensus 126 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 126 TIAFGLRNVPDID--KALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEecccccCCCHH--HHHHHHHHhccCCcEEEEEE
Confidence 9999999987766 99999999999999998765
No 54
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.55 E-value=5.5e-14 Score=123.84 Aligned_cols=109 Identities=9% Similarity=-0.049 Sum_probs=86.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC------CCCCCCceEEEEeCCCCCCCCC-
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPET- 228 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~------~~~~~~~v~~~~~d~~~~~~~~- 228 (272)
.+..+|||+|||.|+.+..| ++.+.+|++||+|+.+++.+.+........ ......+++++++|+.++.+..
T Consensus 36 ~~~~rvL~~gCG~G~da~~L-A~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWL-AEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHH-HhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35579999999999999977 688899999999999999875432111000 0012457899999999886443
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
+.||+|+-..+++|++......+++.+.++|+|||.+
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~ 151 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRG 151 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeE
Confidence 5899999999999999888889999999999999853
No 55
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.54 E-value=5.3e-14 Score=121.97 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=88.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC---cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~---~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.++.+|||+|||+|.++..++ +.++ +++++|+++.+++.+++++. ...++++..+|+.+.++.+++||
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~-~~~~~~~~~~~iD~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELA-KSAPDRGKVTGVDFSSEMLEVAKKKSE--------LPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHH-HhcCCCceEEEEECCHHHHHHHHHHhc--------cCCCceEEecchhcCCCCCCcEE
Confidence 356799999999999999885 5444 89999999999999998863 23468999999988776667899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|+++++++|+.+.. .+++++.+.|+|||.+++.+
T Consensus 109 ~i~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQ--KALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEEeeeeCCcccHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999999987766 99999999999999998765
No 56
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.54 E-value=6.4e-14 Score=122.62 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=86.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++....|+++|+|+.|++.|++++... ....++.|.++|+.+.+ ++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~l-a~~~~~v~gvD~s~~~i~~a~~~~~~~-----~~~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIEL-AKRGAIVKAVDISEQMVQMARNRAQGR-----DVAGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECChhhCC---CCcCEEE
Confidence 45679999999999999988 467779999999999999999987431 11247899999998764 5899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+..+++|++.+++..+++++.+.+++++.+..
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999887788999999999987776654
No 57
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.53 E-value=1.9e-14 Score=123.95 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=88.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE-EEEeCCCCCC-CCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fDl 233 (272)
.....||++|||||..-..+=-....+|+++||++.|-+.+.+.++.. ...++. |+.++.++++ .++++||+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~------k~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK------KPLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc------cCcceEEEEeechhcCcccccCCeee
Confidence 445578999999999877441124679999999999999999887543 345566 8999999987 56789999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..+|.-..|+. +.|++++++|+|||.++.-|
T Consensus 149 VV~TlvLCSve~~~--k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPV--KQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEEEEeccCCHH--HHHHHHHHhcCCCcEEEEEe
Confidence 99999999988877 99999999999999998766
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.52 E-value=6.4e-14 Score=119.97 Aligned_cols=98 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+.+|||+|||+|.++..+ +..+ .+|+++|+|+.|++.+++++... ...+++++++|++++.. .++||+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~l-a~~~~~~~V~~iD~s~~~~~~a~~~~~~~------~~~~i~~i~~d~~~~~~-~~~fD~I~ 114 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPL-AIARPELKLTLLESNHKKVAFLREVKAEL------GLNNVEIVNGRAEDFQH-EEQFDVIT 114 (181)
T ss_pred CCeEEEecCCCCccHHHH-HHHCCCCeEEEEeCcHHHHHHHHHHHHHh------CCCCeEEEecchhhccc-cCCccEEE
Confidence 569999999999999977 4544 47999999999999999887532 23469999999998753 46999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.. +++ +..+++.+.+.|+|||.+++..
T Consensus 115 s~~-~~~-----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LAS-----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hhC-----HHHHHHHHHHhcCCCCEEEEEc
Confidence 876 433 3368889999999999988754
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.52 E-value=2.3e-13 Score=107.19 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=79.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD 232 (272)
.+..+|||+|||+|.++..++ +.+ .+|+++|+|+.+++.+++++... ...++.++..|+... +...++||
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAA-RLVPNGRVYAIERNPEALRLIERNARRF------GVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHH-HHCCCceEEEEcCCHHHHHHHHHHHHHh------CCCceEEEeccccccChhhcCCCC
Confidence 455699999999999999885 543 47999999999999999887432 234688888887653 22235899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++....++ ..++++++.+.|+|||.+++.
T Consensus 91 ~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 9999876533 348999999999999998763
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.52 E-value=1.8e-13 Score=120.52 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..+ ++...+++++|+++.+++.+++++... ...+++...++.+++ ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l-~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESM-ARLGADVTGIDASEENIEVARLHALES-------GLKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHH-HHcCCeEEEEcCCHHHHHHHHHHHHHc-------CCceEEEecCHHHhhhhcCCCccEE
Confidence 35678999999999999977 467789999999999999999876421 235788888887764 233689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.+++|+++.. .+|+++.+.|+|||.+++..
T Consensus 119 i~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 119 TCMEMLEHVPDPA--SFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EEhhHhhccCCHH--HHHHHHHHHcCCCcEEEEEe
Confidence 9999999998776 89999999999999988753
No 61
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.51 E-value=1.5e-13 Score=127.32 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=81.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++....... .....++.|.+.|++++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~l-a~~g~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPL-ALEGAIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcchhhc---CCCcCEEEE
Confidence 4579999999999999988 477789999999999999999986431000 00124678999998665 368999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..+++|+++++...+++.+.+ +.+||.+|.
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 999999988777778888875 456666553
No 62
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.51 E-value=1.2e-13 Score=126.97 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=88.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.+..+|||||||+|.++..++ +.++ +++++|. +.+++.+++++... ....+++++.+|+.+.+++ .+|
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----gl~~rv~~~~~d~~~~~~~--~~D 217 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAML-KHFPELDSTILNL-PGAIDLVNENAAEK-----GVADRMRGIAVDIYKESYP--EAD 217 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHH-HHCCCCEEEEEec-HHHHHHHHHHHHhC-----CccceEEEEecCccCCCCC--CCC
Confidence 4566799999999999999885 6655 6888996 78999999887543 2345799999999765543 479
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|++++++|+.++++...+|+++++.|+|||.+++.|.
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999998887778999999999999999998875
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.51 E-value=2.4e-13 Score=114.97 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCc--EEEEeCCHHHHHHHHHhccccCCCCCCCCC
Q 024100 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (272)
Q Consensus 135 ~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~--v~~vD~S~~mld~A~~~l~~~~~~~~~~~~ 212 (272)
++....+|.+.+... +..+|||+|||+|.++..+ ++.++. |+++|.|+.+++.+++++... ...
T Consensus 16 ~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~l-a~~~~~~~v~~vDi~~~a~~~a~~n~~~n------~~~ 81 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLAL-AKRGPDAKVTAVDINPDALELAKRNAERN------GLE 81 (170)
T ss_dssp HHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHH-HHTSTCEEEEEEESBHHHHHHHHHHHHHT------TCT
T ss_pred CCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHH-HHhCCCCEEEEEcCCHHHHHHHHHHHHhc------Ccc
Confidence 444444555555422 4568999999999999977 577776 999999999999999988542 222
Q ss_pred ceEEEEeCCCCCCCCCCcceeeEechhhhhcCh---hhHHHHHHHHHHhcccCcEEEE
Q 024100 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 213 ~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d---~~~~~~l~~~~r~LkpgG~liv 267 (272)
++++++.|+.+... +++||+|+++-.++.-.+ .-..++++++.+.|+|||.+++
T Consensus 82 ~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 82 NVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 38999999876543 479999999987654433 2356899999999999998743
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.51 E-value=5e-14 Score=122.45 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=81.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCC--CCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~f 231 (272)
+..+|||+|||+|.++..++ +.+ .+|++||+|+.|++.|++++... ...++.++++|+ +.++ +++++|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la-~~~p~~~v~gVD~s~~~i~~a~~~~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMA-KANPDINFIGIEVHEPGVGKALKKIEEE------GLTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHH-HHCCCccEEEEEechHHHHHHHHHHHHc------CCCCEEEEecCHHHHHHHHcCcccc
Confidence 45689999999999999874 554 47999999999999999887432 235799999999 6654 455789
Q ss_pred eeeEechhhhhcC------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLT------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++++...+.. ......+++++.+.|+|||.+++.
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 9999987542221 112357999999999999998775
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.50 E-value=2.5e-13 Score=115.43 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=83.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|.|+.|++.+++++.. ...+++++++|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRL-KGKGKCILTTDINPFAVKELRENAKL-------NNVGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHH-------cCCceEEEEccccccc--CCcccEEEE
Confidence 4568999999999999977 56677999999999999999998743 1236888999987654 348999999
Q ss_pred chhhhhcChh-------------------hHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDD-------------------DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~-------------------~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+++.++. .+..+++++.++|+|||.+++.+
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 9888777542 14578999999999999987764
No 66
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.50 E-value=2.1e-13 Score=119.45 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+..+|||+|||+|.++..+ ++.+..|+++|+|+.|++.|++++... ....+++|..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l-~~~~~~v~~~D~s~~~i~~a~~~~~~~-----~~~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPL-ARRGAKVVASDISPQMVEEARERAPEA-----GLAGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHhc-----CCccCcEEEEcCchh---ccCCcCEEE
Confidence 35679999999999999988 467778999999999999999987432 112478999988543 346899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
+..+++|+++++...+++++.+.+++++.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999888889999999877554444
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.49 E-value=1.8e-13 Score=123.97 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=75.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-----CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-----~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
...+|||+|||+|.++..++ +.. ..++++|+|+.|++.|+++. +++.|..+|+.++++++++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALA-DALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHH-HhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCce
Confidence 44689999999999999884 443 26899999999999998764 36789999999988877899
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++.++ + ..++++.++|+|||.+++..
T Consensus 153 D~I~~~~~------~---~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 153 DAIIRIYA------P---CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred eEEEEecC------C---CCHHHHHhhccCCCEEEEEe
Confidence 99998654 2 24678999999999998763
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.48 E-value=2.3e-13 Score=118.81 Aligned_cols=104 Identities=18% Similarity=0.333 Sum_probs=87.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-CCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fDlIv 235 (272)
.+.+|||+|||+|.++..+ ++....++++|+|+.+++.+++++... ...++++.+.|+.+++.. +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l-~~~~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPL-ARLGANVTGIDASEENIEVAKLHAKKD------PLLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhhcCCCCCccEEE
Confidence 4679999999999999977 466778999999999999999887431 122588999998877543 36899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+++|+.++. .+|+++.+.|+|||.+++..
T Consensus 118 ~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHVPDPQ--AFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhCCCHH--HHHHHHHHhcCCCcEEEEEe
Confidence 999999998877 99999999999999988754
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=6.6e-13 Score=115.63 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=78.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|..+..+ ++. ..+|+++|.++.|++.|++++... ....+++++.+|+.+..+..++|
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~l-a~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-----~~~~~v~~~~~d~~~~~~~~~~f 143 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVC-AEAIERRGKVYTVEIVKELAIYAAQNIERL-----GYWGVVEVYHGDGKRGLEKHAPF 143 (205)
T ss_pred CCCCCEEEEECcCccHHHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEECCcccCCccCCCc
Confidence 346679999999999999866 454 358999999999999999987532 12246899999997754445699
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++..+++|++ .++.+.|+|||.+++
T Consensus 144 D~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi 171 (205)
T PRK13944 144 DAIIVTAAASTIP--------SALVRQLKDGGVLVI 171 (205)
T ss_pred cEEEEccCcchhh--------HHHHHhcCcCcEEEE
Confidence 9999999987764 356789999999875
No 70
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.44 E-value=9.5e-13 Score=121.14 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=83.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCC---
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG--- 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~--- 229 (272)
.++.+|||+|||+|+.+..|+... ..+++++|+|++||+.|++++... .....+.++++|+.+. +....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----~p~~~v~~i~gD~~~~~~~~~~~~~ 136 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----YPQLEVHGICADFTQPLALPPEPAA 136 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----CCCceEEEEEEcccchhhhhccccc
Confidence 355789999999999999886443 468999999999999999987421 1123567789998763 32221
Q ss_pred -cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 -RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 -~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...++++..+++|++.++...+|++++++|+|||.+++.
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 234566667899999888889999999999999988754
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=99.44 E-value=8.1e-13 Score=120.89 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=86.3
Q ss_pred CCCeeeEeecccchHHHHHHH-hcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa-~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.+.+|+|||||.|.+|.-+++ ..++ .++++|.++.+++.|++.+... .+...+++|..+|+.+.....+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~----~gL~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD----PDLSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc----cCccCCcEEEECchhhcccccCCcCE
Confidence 567999999998866554444 4555 5999999999999999987421 12346799999999876433468999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++. +++|+..++..++|+++.+.|+|||.+++.
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999 999997666779999999999999999864
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=1.5e-12 Score=111.34 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=79.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+..+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++... ...+++++++|... .. +++||
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~n~~~~------~~~~i~~~~~d~~~-~~-~~~~D 99 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAA-LQFPSLQVTAIERNPDALRLIKENRQRF------GCGNIDIIPGEAPI-EL-PGKAD 99 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCeEEEecCchh-hc-CcCCC
Confidence 3466799999999999999885 554 48999999999999999887432 22468899888743 22 35899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++....++ +..+++.+.+.|+|||.+++..
T Consensus 100 ~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 100 AIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEE
Confidence 9999876544 3478999999999999987653
No 73
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.43 E-value=6.4e-13 Score=114.38 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=73.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CC-CCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++......++++|+|+.|++.++++ +++++++|+.+ ++ +++++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 4569999999999999977434456789999999999998642 35788888865 32 445789999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARS 262 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lkpg 262 (272)
+++.++||+++++ .+++++.+.++++
T Consensus 80 i~~~~l~~~~d~~--~~l~e~~r~~~~~ 105 (194)
T TIGR02081 80 ILSQTLQATRNPE--EILDEMLRVGRHA 105 (194)
T ss_pred EEhhHhHcCcCHH--HHHHHHHHhCCeE
Confidence 9999999998877 8999998887653
No 74
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.43 E-value=9.2e-13 Score=115.31 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=78.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCc---EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~---v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..+ ++.+.. |+++|.++.|++.|++++... ...+++++++|..+..+..++|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~l-a~~~~~~g~V~~vD~~~~~~~~A~~~~~~~------g~~~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVL-AEIVGRDGLVVSIERIPELAEKAERRLRKL------GLDNVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHH-HHHhCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCeEEEECCcccCCcccCCC
Confidence 456789999999999999966 566544 999999999999999988543 2357999999987754444689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++.....+++ ..+.+.|+|||.+++.
T Consensus 148 D~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 148 DRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred CEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 9999987765543 4467889999998753
No 75
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=1.3e-12 Score=114.44 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||||||+|.++..+ ++.. .+|+++|+++.|++.|++++... ...+++++++|.....++.++|
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~l-a~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------g~~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVV-AEIVGKSGKVVTIERIPELAEKAKKTLKKL------GYDNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred CCCcCEEEEECCcccHHHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccCCCcCCCc
Confidence 457789999999999999866 5543 48999999999999999998542 2357999999987655555789
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++..++++++ ..+.+.|+|||.+++.
T Consensus 147 D~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 147 DRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 9999988765542 3466789999998764
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.41 E-value=6.6e-13 Score=114.61 Aligned_cols=105 Identities=13% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~f 231 (272)
...++||||||+|.++..++ +.++ +++++|+|+.|++.|++++... ...+++++++|+.++. ++++++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la-~~~p~~~v~gvD~~~~~l~~a~~~~~~~------~l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMA-KQNPDKNFLGIEIHTPIVLAANNKANKL------GLKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHH-HhCCCCCEEEEEeeHHHHHHHHHHHHHh------CCCCEEEEccCHHHHHHhhCCCCce
Confidence 34589999999999999885 5544 8999999999999999887432 2358999999997643 334589
Q ss_pred eeeEechhhhhcChh------hHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDD------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|++++...+.... ....+++++.++|+|||.|++.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 999988764332111 0137999999999999998754
No 77
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.37 E-value=5.9e-12 Score=93.63 Aligned_cols=102 Identities=22% Similarity=0.300 Sum_probs=81.9
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceeeEech
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIvs~~ 238 (272)
+++|+|||+|.++..++.....++.++|.++.+++.+++.... ....+++++..|+.+... ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------LLADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc------ccccceEEEEcChhhhccccCCceEEEEEcc
Confidence 4899999999999988543567999999999999999843211 134578999999988753 346899999999
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++++ ......+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99874 344559999999999999999864
No 78
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=7.2e-12 Score=110.83 Aligned_cols=111 Identities=13% Similarity=-0.010 Sum_probs=88.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcccc------CCCCCCCCCceEEEEeCCCCCCCC--
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKATNFFCVPLQDFTPE-- 227 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~------~~~~~~~~~~v~~~~~d~~~~~~~-- 227 (272)
.++.+||+.|||.|.-...| +..+.+|+++|.|+..++.+.+..... +.........++++++|+.++++.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~L-A~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFF-LSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHH-HhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 35679999999999999977 688889999999999999986642110 000011245799999999998642
Q ss_pred -CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 228 -~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.+.||+|+-..+|++++.+...+..+.+.++|+|||.++.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1589999999999999988888999999999999998754
No 79
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.36 E-value=7.3e-12 Score=109.15 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=78.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ ++...+|+++|.++.|++.|++++... ...++++.++|..+..+..++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~l-a~~~~~v~~vd~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVL-AHLVRRVFSVERIKTLQWEAKRRLKQL------GLHNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHH-HHHhCEEEEEeCCHHHHHHHHHHHHHC------CCCceEEEECCcccCCCcCCCcCEE
Confidence 456789999999999999855 676679999999999999999988543 2346899999976543334689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++..+++++ .+.+.+.|+|||.+++.
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAP 174 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEE
Confidence 998877654 34567899999998754
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.35 E-value=3.1e-12 Score=107.28 Aligned_cols=81 Identities=11% Similarity=0.059 Sum_probs=68.0
Q ss_pred EEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCc
Q 024100 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSG 263 (272)
Q Consensus 184 ~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG 263 (272)
+|+|+|+.|++.|+++..... .....+++|+++|++++++++++||+|++.+++||+.|.. .+|++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~---~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA---RSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc---ccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCcCe
Confidence 489999999999987753210 0123479999999999988878999999999999997766 99999999999999
Q ss_pred EEEEec
Q 024100 264 TFLLSH 269 (272)
Q Consensus 264 ~liv~E 269 (272)
.+++.|
T Consensus 76 ~l~i~d 81 (160)
T PLN02232 76 RVSILD 81 (160)
T ss_pred EEEEEE
Confidence 998775
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.34 E-value=7.9e-12 Score=114.38 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=76.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++... .....+.+...+.... .+++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa-~~g~~~V~avDid~~al~~a~~n~~~n-----~~~~~~~~~~~~~~~~--~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAAL-KLGAAKVVGIDIDPLAVESARKNAELN-----QVSDRLQVKLIYLEQP--IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHc-----CCCcceEEEecccccc--cCCCceEEE
Confidence 45799999999999998774 554 48999999999999999987532 1223456666654332 346899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++...++ +..++.++.+.|+|||.++++.
T Consensus 231 an~~~~~-----l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 231 ANILAEV-----IKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred EecCHHH-----HHHHHHHHHHHcCCCcEEEEEe
Confidence 9876533 4589999999999999998864
No 82
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.34 E-value=3.2e-12 Score=100.31 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=80.9
Q ss_pred CeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcceeeE
Q 024100 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDlIv 235 (272)
.+|||+|||+|.++..++ +.+ .+++++|+++..++.|+.++... ....+++++++|+.++. ..+++||+|+
T Consensus 2 ~~vlD~~~G~G~~~~~~~-~~~~~~~~gvdi~~~~~~~a~~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAAL-RRGAARVTGVDIDPEAVELARRNLPRN-----GLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp EEEEEETSTTCHHHHHHH-HHCTCEEEEEESSHHHHHHHHHHCHHC-----TTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CEEEEcCcchHHHHHHHH-HHCCCeEEEEEECHHHHHHHHHHHHHc-----cCCceEEEEECchhhchhhccCceeEEEE
Confidence 489999999999999885 666 89999999999999999998653 12357999999998764 4557999999
Q ss_pred echhhhhcC------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLT------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++-.+.... ......+++++.+.|+|||.+++.
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 986654321 123458999999999999988753
No 83
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.33 E-value=5.9e-12 Score=114.82 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHH--hccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE--SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~--~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.+.+|||||||.|+++..++.+.-..|.|||+++...-..+. ++- +....+.+....+++++. .+.||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l-------g~~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL-------GQDPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh-------CCCccEEEcCcchhhccc-cCCcCEE
Confidence 567999999999999999964444479999999987766432 221 012234444467788876 5799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|..||.|..+|- ..|++++..|+|||.+|+
T Consensus 187 F~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 187 FSMGVLYHRRSPL--DHLKQLKDSLRPGGELVL 217 (315)
T ss_pred EEeeehhccCCHH--HHHHHHHHhhCCCCEEEE
Confidence 9999999999888 999999999999998864
No 84
>PRK04266 fibrillarin; Provisional
Probab=99.32 E-value=1.3e-11 Score=109.30 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=75.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC----CCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~----~~~~ 228 (272)
+.++.+|||+|||+|.++..+ ++.. ..|+++|.|+.|++.+.++... ..++.++.+|+.+. ++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~l-a~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~- 139 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHV-SDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV- 139 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHH-HHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-
Confidence 567789999999999999977 5654 4899999999999988776531 25788999998652 222
Q ss_pred CcceeeEechhhhhcChhh-HHHHHHHHHHhcccCcEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDD-FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv 267 (272)
++||+|++. +++++ ...+++++.+.|||||.+++
T Consensus 140 ~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 140 EKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 479999854 33332 23578999999999999988
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=99.32 E-value=1.2e-11 Score=108.89 Aligned_cols=105 Identities=14% Similarity=0.024 Sum_probs=78.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+|||+|||+|.++..+ ++.+ .+++++|.|+.|++.+++++... ..++.++++|+.+.. .+++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~l-a~~~~~~v~~vD~s~~~l~~a~~n~~~~-------~~~~~~~~~d~~~~~-~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAA-AAAGAGSVTAVDISRRAVRSARLNALLA-------GVDVDVRRGDWARAV-EFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHH-HHcCCCeEEEEECCHHHHHHHHHHHHHh-------CCeeEEEECchhhhc-cCCCeeE
Confidence 345679999999999999977 4554 48999999999999999887431 225788899987643 3468999
Q ss_pred eEechhhhhcCh-------------------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTD-------------------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d-------------------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++-.+.+-+. ..+..+++++.+.|+|||.+++.
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999743221111 11457889999999999998864
No 86
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.31 E-value=1e-11 Score=108.59 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=73.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--------
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-------- 225 (272)
.++.+|||+|||||.++..++.... ..|++||+++ | . ...++.++++|+.+.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~---------~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------D---------PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------c---------CCCCcEEEecCCCChHHHHHHHHH
Confidence 4667999999999999998854433 4899999988 2 1 1235899999998853
Q ss_pred CCCCcceeeEechhhhhcChhh---------HHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~---------~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+++||+|+|+.+.++..++. ...+|+++.++|+|||.+++.
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3456899999988765543321 246899999999999999874
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=106.41 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=80.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 231 (272)
+.++.+|||+|||+|.++..++... ..+|+++|.++.|++.+++++... ....++.++++|+.++.+ ..++|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-----g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-----GVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCCeEEEEechhhhHhhcCCCC
Confidence 5677899999999999999874332 358999999999999999887532 113578899999876432 23589
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++... ..++..+++.+.+.|+|||.+++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998642 23455899999999999999876
No 88
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.29 E-value=1.3e-11 Score=106.00 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=77.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fDl 233 (272)
.++++|||+|||.|.+...|.......+.|||++++.+..+.++ .++++++|+++- .+++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCccE
Confidence 46789999999999999988655677889999999998888764 467899998753 367789999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+++.+|.++.+++ .+|++|.|+ |...|+
T Consensus 79 VIlsqtLQ~~~~P~--~vL~EmlRV---gr~~IV 107 (193)
T PF07021_consen 79 VILSQTLQAVRRPD--EVLEEMLRV---GRRAIV 107 (193)
T ss_pred EehHhHHHhHhHHH--HHHHHHHHh---cCeEEE
Confidence 99999999999988 899999766 444444
No 89
>PRK00811 spermidine synthase; Provisional
Probab=99.28 E-value=2.1e-11 Score=111.35 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDl 233 (272)
+.+.+||+||||+|.++..++.. ...+|++||+++.+++.|++.+...... ....++++++.+|...+.. ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccE
Confidence 35679999999999999998643 2458999999999999999987532100 0125689999999876532 3468999
Q ss_pred eEechhhhhcChhhH--HHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDF--VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~--~~~l~~~~r~LkpgG~liv~ 268 (272)
|++...-.+.+...+ .+|++.|++.|+|||.++..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998654322222221 47999999999999998764
No 90
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.28 E-value=1.6e-11 Score=109.02 Aligned_cols=100 Identities=17% Similarity=0.287 Sum_probs=81.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.....+|+|||+|+|.++..++ +.++ ++++.|. |..++.+++ ..+++++.+|+. -+++ . +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~v~~~~~~------------~~rv~~~~gd~f-~~~P-~-~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALA-RAYPNLRATVFDL-PEVIEQAKE------------ADRVEFVPGDFF-DPLP-V-AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHH-HHSTTSEEEEEE--HHHHCCHHH------------TTTEEEEES-TT-TCCS-S-ES
T ss_pred ccCccEEEeccCcchHHHHHHH-HHCCCCcceeecc-Hhhhhcccc------------ccccccccccHH-hhhc-c-cc
Confidence 4566789999999999999985 6666 5666776 778888877 248999999997 3333 3 99
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccC--cEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARS--GTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg--G~liv~E~~ 271 (272)
+|++.++||+++|++...+|+++++.|+|| |.|++.|.+
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 999999999999999999999999999999 999999865
No 91
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=108.53 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=73.1
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechh
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~v 239 (272)
.++|+|||+|..++-+ +.++.+|+++|+|+.||+.|++....- ......++...++.++.-.+++.|+|++..+
T Consensus 36 ~a~DvG~G~Gqa~~~i-ae~~k~VIatD~s~~mL~~a~k~~~~~-----y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGI-AEHYKEVIATDVSEAMLKVAKKHPPVT-----YCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred eEEEeccCCCcchHHH-HHhhhhheeecCCHHHHHHhhcCCCcc-----cccCCccccccccccccCCCcceeeehhhhh
Confidence 8999999999777744 799999999999999999998765321 1112233444444444333689999999999
Q ss_pred hhhcChhhHHHHHHHHHHhcccCc-EE
Q 024100 240 IGHLTDDDFVSFFKRAKENIARSG-TF 265 (272)
Q Consensus 240 l~hl~d~~~~~~l~~~~r~LkpgG-~l 265 (272)
+|.+. +++|+++++++|++.| .+
T Consensus 110 ~HWFd---le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 110 VHWFD---LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred HHhhc---hHHHHHHHHHHcCCCCCEE
Confidence 98863 4479999999999877 44
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.27 E-value=4.1e-11 Score=106.18 Aligned_cols=104 Identities=21% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.+.+|||+|||+|.++..++ +. ..+++++|+|+.+++.|++++... ...++.++++|+.+. .+.++||+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~-~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~-~~~~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALA-KERPDARVTAVDISPEALAVARKNAARL------GLDNVTFLQSDWFEP-LPGGKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhcc-CcCCceeEE
Confidence 34589999999999999885 54 348999999999999999887432 234689999998763 234689999
Q ss_pred Eechhh------hhcChh------------------hHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCI------GHLTDD------------------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl------~hl~d~------------------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++-.+ +++... ....+++++.+.|+|||.+++.
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 985332 222111 1247899999999999998764
No 93
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.26 E-value=3.8e-11 Score=107.62 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=70.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..+ ++.+. .|+++|+|+.|++.|++++... .....+.+..+ +.+||+|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~-~~~g~~~v~giDis~~~l~~A~~n~~~~-----~~~~~~~~~~~--------~~~fD~V 183 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAA-AKLGAKKVLAVDIDPQAVEAARENAELN-----GVELNVYLPQG--------DLKADVI 183 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHH-HHcCCCeEEEEECCHHHHHHHHHHHHHc-----CCCceEEEccC--------CCCcCEE
Confidence 35679999999999999966 56655 4999999999999999987431 11112222221 1279999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++...+ .+..++.++.+.|+|||.++++.
T Consensus 184 vani~~~-----~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 184 VANILAN-----PLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred EEcCcHH-----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 9875532 24578999999999999999864
No 94
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.25 E-value=4.2e-11 Score=111.50 Aligned_cols=106 Identities=12% Similarity=-0.069 Sum_probs=83.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ +..+..++++|+++.|++.|+.++... ...++.+.++|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~liea-a~~~~~v~g~Di~~~~~~~a~~nl~~~------g~~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEA-GLMGAKVIGCDIDWKMVAGARINLEHY------GIEDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHH-HHhCCeEEEEcCCHHHHHHHHHHHHHh------CCCCCeEEecchhcCCcccCCCCEE
Confidence 456679999999999999876 567889999999999999999988543 2234789999999887666799999
Q ss_pred Eechhhhh-------cChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGH-------LTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~h-------l~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++-.+.. ....-...+++++.+.|+|||.+++
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 99643211 1112246899999999999998764
No 95
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=4e-11 Score=101.04 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+..+|||+|||+|.++..++ +...+|+++|.++.|++.+++++.. ..+++++.+|+.++++++..||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~-~~~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELL-ERAARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHH-hcCCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 3456699999999999999885 5578999999999999999988732 357899999999987765579999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++-.+ |++.+.+..+++.. .+.++|.+++.
T Consensus 82 i~n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPY-NISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EECCCc-ccHHHHHHHHHhcC--CCcceEEEEEE
Confidence 998765 55544444554432 24477777654
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.24 E-value=7.7e-11 Score=101.58 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=75.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.+++++... ...+++++++|+.+ ++.....+
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la-~~~~~~~V~~vD~s~~~~~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAG-LLCPKGRVIAIERDEEVVNLIRRNCDRF------GVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCeEEEECchHHHHhhCCCCC
Confidence 3567799999999999999874 43 358999999999999999987532 23468999998854 22112246
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|.|++.. ...+..+++++.+.|+|||.+++..
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 7765532 1234589999999999999987653
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.24 E-value=6.4e-11 Score=108.25 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=77.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++ +.+ .+|+++|.|+.+++.|++++... ....+++|+++|+.+.. ++++||+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la-~~~~~~~v~avDis~~al~~A~~n~~~~-----~~~~~i~~~~~D~~~~~-~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACA-YAFPEAEVDAVDISPDALAVAEINIERH-----GLEDRVTLIQSDLFAAL-PGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECchhhcc-CCCCccEE
Confidence 34689999999999999884 554 48999999999999999987532 12247899999985532 23589999
Q ss_pred Eech------hhhhcC-----h------------hhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQW------CIGHLT-----D------------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~------vl~hl~-----d------------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++- .+.++. + .....+++++.+.|+|||.+++
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9862 111111 1 1235789999999999999875
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.24 E-value=1.2e-10 Score=110.44 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=79.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
....+||||||+|.++..++ +.. ..++|+|+++.|++.|.+++... ...|+.++++|+..+ .++++++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA-~~~P~~~~iGIEI~~~~i~~a~~ka~~~------gL~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQA-KNNPNKLFIGIEIHTPSIEQVLKQIELL------NLKNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHH-HhCCCCCEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHhhhhCCCCcee
Confidence 34589999999999999884 554 48999999999999999887432 346899999998654 24567999
Q ss_pred eeEechhhhhcChh----hHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDD----DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~----~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|++++..-+.... ....+++++.++|+|||.+.+.
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 99986543221111 0137999999999999988653
No 99
>PRK14968 putative methyltransferase; Provisional
Probab=99.23 E-value=1e-10 Score=98.94 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=78.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..++ ....+++++|.|+.|++.+++++..... ....+.++.+|+.+... +++||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~d~~~~~~-~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAA-KNGKKVVGVDINPYAVECAKCNAKLNNI----RNNGVEVIRSDLFEPFR-GDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHH-hhcceEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEecccccccc-ccCceEEEE
Confidence 55689999999999999885 5588999999999999999988743210 11127888888766433 348999998
Q ss_pred chhhhhcC-------------------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLT-------------------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~-------------------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..+.+-+ ...+..+++++.+.|+|||.+++.
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 75432211 112457899999999999987654
No 100
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.22 E-value=8.2e-11 Score=109.73 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=77.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCC----CCCceEEEEeCCCC------CCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD----MHKATNFFCVPLQD------FTP 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~----~~~~v~~~~~d~~~------~~~ 226 (272)
++.+|||+|||-|.-...........+.|+|+|...|+.|+++....+..... ..-...|+.+|... +.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999888777775556789999999999999999988322111000 11245677887642 222
Q ss_pred CCCcceeeEechhhhhc--ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl--~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....||+|-|+++|||. +......+|+++...|+|||+||.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22599999999999998 3344567999999999999999753
No 101
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.22 E-value=2.6e-12 Score=112.51 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=81.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDl 233 (272)
.+..++||+|||||-.+..| .....+.++||+|++|+++|.++=- --+.++.++..|. ..+.+||+
T Consensus 124 g~F~~~lDLGCGTGL~G~~l-R~~a~~ltGvDiS~nMl~kA~eKg~-----------YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEAL-RDMADRLTGVDISENMLAKAHEKGL-----------YDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred CccceeeecccCcCcccHhH-HHHHhhccCCchhHHHHHHHHhccc-----------hHHHHHHHHHHHhhhccCCcccc
Confidence 34779999999999999988 6788899999999999999998621 1133445554443 24469999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEE-EecCC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL-LSHSL 271 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li-v~E~~ 271 (272)
|++..||.|+.+-+ .+|.-...+|+|||.+. .+|++
T Consensus 192 i~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 192 IVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEeccc
Confidence 99999999998766 99999999999999774 55543
No 102
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.22 E-value=1.6e-10 Score=105.51 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=77.0
Q ss_pred CeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.+|||+|||+|.++..++ ..+ .+|+++|+|+.+++.|++++... ....+++|+++|+.+.. +.++||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la-~~~~~~~v~avDis~~al~~a~~n~~~~-----~~~~~v~~~~~d~~~~~-~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA-YEFPNAEVIAVDISPDALAVAEENAEKN-----QLEHRVEFIQSNLFEPL-AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECchhccC-cCCCccEEEE
Confidence 589999999999999884 554 48999999999999999987532 12235899999986642 2248999998
Q ss_pred ch-------------hhhhcCh----------hhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QW-------------CIGHLTD----------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~-------------vl~hl~d----------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+- ++.|-+. .....+++++.+.|+|||.+++
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 61 2333221 1355789999999999999875
No 103
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.21 E-value=8.7e-11 Score=99.76 Aligned_cols=104 Identities=14% Similarity=0.281 Sum_probs=79.0
Q ss_pred eeeEeecccchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 160 VALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
+|||+|||.|.+...|+...|+. .++||.|+..++.|+...++- .....|+|.+.|+.+-++..+.||+|.--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~-----~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD-----GFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc-----CCCcceeEEEeeccCCcccccceeEEeecC
Confidence 99999999999999997666776 999999999999997765432 223349999999987666667899988433
Q ss_pred hhhhc------ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHL------TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl------~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.-+ .+..+...+..+.+.|+|||++++.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 22111 1222346788899999999998875
No 104
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=4.1e-11 Score=105.66 Aligned_cols=143 Identities=18% Similarity=0.298 Sum_probs=102.4
Q ss_pred HHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC----c
Q 024100 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN----E 182 (272)
Q Consensus 107 ~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~----~ 182 (272)
..+..|||...... ...+.-.+.+|.+-++.+++... ....+||++|||.|+...+++ +..+ .
T Consensus 33 ~~~~k~wD~fy~~~-----------~~rFfkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll-~~~~n~~l~ 99 (264)
T KOG2361|consen 33 REASKYWDTFYKIH-----------ENRFFKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLL-KTSPNNRLK 99 (264)
T ss_pred cchhhhhhhhhhhc-----------cccccchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhh-hcCCCCCeE
Confidence 45688997644332 23333346667666666654322 222389999999999999997 4433 5
Q ss_pred EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC----CCCCCCcceeeEechhhhhcChhhHHHHHHHHHHh
Q 024100 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKEN 258 (272)
Q Consensus 183 v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~ 258 (272)
+.+.|.|+..++..+++.... ..++.-.+.|+.. -+++.+++|.|++-++|--+..+....++++++++
T Consensus 100 v~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTL 172 (264)
T ss_pred EEEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHH
Confidence 788899999999998875431 2344445555532 23455799999999999888877788999999999
Q ss_pred cccCcEEEEec
Q 024100 259 IARSGTFLLSH 269 (272)
Q Consensus 259 LkpgG~liv~E 269 (272)
|||||.++..|
T Consensus 173 lKPGG~llfrD 183 (264)
T KOG2361|consen 173 LKPGGSLLFRD 183 (264)
T ss_pred hCCCcEEEEee
Confidence 99999998765
No 105
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=6.8e-11 Score=109.90 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=76.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC---cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~---~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..+ ++... .|+++|.++.|++.|++++... ...++.++++|..+..+..++|
T Consensus 78 i~~g~~VLDIG~GtG~~a~~L-A~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------g~~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVM-SRVVGEKGLVVSVEYSRKICEIAKRNVRRL------GIENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHH-HHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCChhhcccccCCc
Confidence 456679999999999999977 45543 5999999999999999987532 2357899999987655444689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++...+.+++ ..+.+.|+|||.+++.
T Consensus 151 D~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 151 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred cEEEECCchHHhH--------HHHHHhcCCCCEEEEE
Confidence 9999987765542 2356789999998764
No 106
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.19 E-value=1.3e-10 Score=103.97 Aligned_cols=94 Identities=18% Similarity=0.286 Sum_probs=77.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
...++||||+|.|.+|..+ +..|.+|.++|.|+.|...-+++ ..+ +.+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l-~~~f~~v~aTE~S~~Mr~rL~~k-------------g~~--vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERL-APLFKEVYATEASPPMRWRLSKK-------------GFT--VLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHH-HhhcceEEeecCCHHHHHHHHhC-------------CCe--EEehhhhhccCCceEEEee
Confidence 4568999999999999988 79999999999999998777653 122 3344445434468999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.++|..-.+|. .+|+.+++.|+|+|.+++.
T Consensus 158 LNvLDRc~~P~--~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNVLDRCDRPL--TLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhhhccCCHH--HHHHHHHHHhCCCCEEEEE
Confidence 99998877777 9999999999999998763
No 107
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=1.3e-10 Score=107.34 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=76.6
Q ss_pred CeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.+|||+|||+|.++..++ ..+ .+|+++|.|+.+++.|++++... ....+++++++|+.+..+ +++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la-~~~p~~~V~avDis~~al~~A~~n~~~~-----~l~~~i~~~~~D~~~~l~-~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACA-YAFPDAEVDAVDISPDALAVAEINIERH-----GLEDRVTLIESDLFAALP-GRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCCcEEEEECchhhhCC-CCCccEEEE
Confidence 589999999999999884 554 48999999999999999997532 122469999999865432 358999998
Q ss_pred chh------h-------hhcCh----------hhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QWC------I-------GHLTD----------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~v------l-------~hl~d----------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+-. + +|-+. .....+++++.+.|+|||.+++
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 621 1 12111 1235789999999999999876
No 108
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.18 E-value=8.8e-11 Score=100.58 Aligned_cols=96 Identities=19% Similarity=0.161 Sum_probs=69.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-------
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------- 225 (272)
+.++.+|||+|||+|.++..++..... +++++|+|+.+ . ..++.++++|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------CCCceEEEeeCCChhHHHHHHH
Confidence 457789999999999999977533323 59999999854 1 135788888887642
Q ss_pred -CCCCcceeeEechh--------hhhcCh-hhHHHHHHHHHHhcccCcEEEE
Q 024100 226 -PETGRYDVIWVQWC--------IGHLTD-DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 226 -~~~~~fDlIvs~~v--------l~hl~d-~~~~~~l~~~~r~LkpgG~liv 267 (272)
.+.++||+|++..+ +.|+.. .....+|+.+.+.|+|||.+++
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 23458999998643 333221 2245899999999999999887
No 109
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=101.53 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=78.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-CCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fDlIv 235 (272)
.+.-|||||||+|-.+..| ...+..++++|+|+.|++.|.+.. . ..+++.+|+- .+++.+++||-++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL-~~~Gh~wiGvDiSpsML~~a~~~e----------~-egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVL-SDSGHQWIGVDISPSMLEQAVERE----------L-EGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchhee-ccCCceEEeecCCHHHHHHHHHhh----------h-hcCeeeeecCCCCCCCCCccceEE
Confidence 4778999999999999966 677889999999999999998642 1 2567778874 5788889999999
Q ss_pred echhhh---------hcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIG---------HLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~---------hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+-.++. |.+-.-+..||..++.+|++|+..+..
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 644332 223334668999999999999987653
No 110
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.1e-10 Score=99.77 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=82.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|+.+. ++++...+|..+|..+...+.|++++... ...|+.+.++|-..--++..+||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aA-vla~l~~~V~siEr~~~L~~~A~~~L~~l------g~~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAA-VLARLVGRVVSIERIEELAEQARRNLETL------GYENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHH-HHHHHhCeEEEEEEcHHHHHHHHHHHHHc------CCCceEEEECCcccCCCCCCCcCEE
Confidence 6788999999999999999 55898889999999999999999998764 3457999999987654455799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+.+.-.+++. +.+.|++||.+++-
T Consensus 143 ~Vtaaa~~vP~~--------Ll~QL~~gGrlv~P 168 (209)
T COG2518 143 IVTAAAPEVPEA--------LLDQLKPGGRLVIP 168 (209)
T ss_pred EEeeccCCCCHH--------HHHhcccCCEEEEE
Confidence 999887666543 36789999998764
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.16 E-value=3.2e-10 Score=102.12 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=78.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..++ ..+ ..++++|+|+.+++.|++++.. ....++.++++|+.+... +++||+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la-~~~~~~~v~~iDis~~~l~~a~~n~~~------~~~~~i~~~~~d~~~~~~-~~~fD~ 178 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALA-KERPDAEVTAVDISPEALAVARRNAKH------GLGARVEFLQGDWFEPLP-GGRFDL 178 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHh------CCCCcEEEEEccccCcCC-CCceeE
Confidence 456799999999999999885 554 6899999999999999998741 124578999999855322 368999
Q ss_pred eEechhh------hhcCh------------------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCI------GHLTD------------------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl------~hl~d------------------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++-.. +.+.. ..+..+++++.+.|+|||.+++.
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9985321 11110 12357889999999999998863
No 112
>PRK04457 spermidine synthase; Provisional
Probab=99.16 E-value=1.6e-10 Score=104.53 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDl 233 (272)
++.+|||||||+|.++..++ +.+ .++++||+++.+++.|++.+... ...++++++.+|..++- ..+++||+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~-~~~p~~~v~~VEidp~vi~~A~~~f~~~-----~~~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIY-TYLPDTRQTAVEINPQVIAVARNHFELP-----ENGERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCEEEEECCCHhHHHHHHH-HhCCCCeEEEEECCHHHHHHHHHHcCCC-----CCCCceEEEECCHHHHHHhCCCCCCE
Confidence 46689999999999999775 554 47899999999999999987431 12468999999986642 22358999
Q ss_pred eEechh-hhhcChh-hHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWC-IGHLTDD-DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~v-l~hl~d~-~~~~~l~~~~r~LkpgG~liv 267 (272)
|++... -...+.. ...+++++|++.|+|||.+++
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 997531 1111111 124899999999999999987
No 113
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.15 E-value=1.8e-10 Score=102.84 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~f 231 (272)
....+|||+|||+|.++..+ +++. .++++||..+.|.+.|++++.. +....++++++.|+.++... ..+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~l-a~r~~~a~I~~VEiq~~~a~~A~~nv~l-----n~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLL-AQRTEKAKIVGVEIQEEAAEMAQRNVAL-----NPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred ccCCeEEEecCCcCHHHHHH-hccCCCCcEEEEEeCHHHHHHHHHHHHh-----CcchhceeEehhhHHHhhhccccccc
Confidence 34779999999999999966 5653 5899999999999999999864 23457899999999987532 2469
Q ss_pred eeeEechhh----------------hhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCI----------------GHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl----------------~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+|+=-+ +|...-.++.+++.+.+.|||||.+.++
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999986432 2333334778999999999999988654
No 114
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.15 E-value=4.9e-10 Score=106.96 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=75.9
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlI 234 (272)
+..+|||+|||+|.++..++... ..+|+++|.|+.|++.|++++... ..+++++++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEcchhccccccCCCccEE
Confidence 45689999999999999774332 458999999999999999987532 2378999999865432 23589999
Q ss_pred Eechhhh-----hcCh------------------hhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIG-----HLTD------------------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~-----hl~d------------------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+-... ++.+ +-+..+++.+.+.|+|||.+++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9965310 0000 0134677778899999998765
No 115
>PHA03411 putative methyltransferase; Provisional
Probab=99.14 E-value=2.5e-10 Score=103.40 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
...+|||+|||+|.++..++.+. ..+|+++|.|+.|++.+++++ ++++++++|+.++... .+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----------~~v~~v~~D~~e~~~~-~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----------PEAEWITSDVFEFESN-EKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------cCCEEEECchhhhccc-CCCcEEE
Confidence 34689999999999999775433 458999999999999998864 2578999999887643 5899999
Q ss_pred echhhhhcChhh------------------HHHHHHHHHHhcccCcEEE
Q 024100 236 VQWCIGHLTDDD------------------FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 236 s~~vl~hl~d~~------------------~~~~l~~~~r~LkpgG~li 266 (272)
++-.++|++..+ +.++++.....|+|+|.++
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 999988875432 2456777788999999664
No 116
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.14 E-value=4.2e-10 Score=96.14 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=85.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++++++|||||||.++.+++ .. ..+|+++|-++++++..++++... ..+|+.++.++..+......+||
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARF------GVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEeccchHhhcCCCCCC
Confidence 5788899999999999999984 44 448999999999999999998654 36799999999977643323799
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.|++... .. +..+|+.+...|+|||.+|..-
T Consensus 105 aiFIGGg-~~-----i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 105 AIFIGGG-GN-----IEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEEECCC-CC-----HHHHHHHHHHHcCcCCeEEEEe
Confidence 9999988 34 3379999999999999998753
No 117
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.13 E-value=3.3e-10 Score=99.84 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=84.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCC-C-----CCCCCCceEEEEeCCCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-M-----APDMHKATNFFCVPLQDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~-~-----~~~~~~~v~~~~~d~~~~~~~~ 228 (272)
..++.+||..|||.|.-...| +..+.+|+|+|+|+..++.+.+....... . ......+|+++++|+.++++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~L-a~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWL-AEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHH-HHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCCeEEEeCCCChHHHHHH-HHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 346679999999999999977 67888999999999999998443221100 0 0012357899999999987654
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
++||+|+=..+|+-++.+...+..+.+.++|+|||.+
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 4899999988888888888889999999999999983
No 118
>PTZ00146 fibrillarin; Provisional
Probab=99.13 E-value=5e-10 Score=102.36 Aligned_cols=102 Identities=13% Similarity=-0.002 Sum_probs=73.7
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCC
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE 227 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~ 227 (272)
.+.+..+|||+|||+|.++..++ +.. ..|++||+|+.|++...+... ...|+.++..|+... ...
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lA-diVG~~G~VyAVD~s~r~~~dLl~~ak--------~r~NI~~I~~Da~~p~~y~~~ 199 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVS-DLVGPEGVVYAVEFSHRSGRDLTNMAK--------KRPNIVPIIEDARYPQKYRML 199 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHH-HHhCCCCEEEEEECcHHHHHHHHHHhh--------hcCCCEEEECCccChhhhhcc
Confidence 35677899999999999999885 553 479999999986655444331 124788888898542 112
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.++||+|++..+ . +| +...++.++.+.|||||.|++.
T Consensus 200 ~~~vDvV~~Dva--~-pd-q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 200 VPMVDVIFADVA--Q-PD-QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cCCCCEEEEeCC--C-cc-hHHHHHHHHHHhccCCCEEEEE
Confidence 348999998875 2 22 2336677899999999999874
No 119
>PLN02366 spermidine synthase
Probab=99.12 E-value=6.5e-10 Score=102.76 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=80.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 231 (272)
+.+.+||+||||.|.++..++ ++ ..+|++||+++.+++.|++.+..... .-..++++++.+|...+- .++++|
T Consensus 90 ~~pkrVLiIGgG~G~~~rell-k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA-RHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCC
Confidence 457799999999999999885 55 35899999999999999998754211 113568999999975542 124589
Q ss_pred eeeEechhhhhcChhh--HHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++...-.+.+... -.+|++.+++.|+|||.++.
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9999865432222111 23699999999999999875
No 120
>PRK01581 speE spermidine synthase; Validated
Probab=99.10 E-value=7e-10 Score=104.12 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=79.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHh--ccccCCCCCCCCCceEEEEeCCCCCC-CCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFT-PETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~--l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~ 230 (272)
..+.+||++|||+|..+..++ +.. .+|++||++++|++.|++. +..... ..-..++++++.+|..++- ...++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelL-k~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVL-KYETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcCCC
Confidence 456799999999999999886 543 6899999999999999972 211100 0113578999999988753 23458
Q ss_pred ceeeEechhh--hh-cChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWVQWCI--GH-LTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs~~vl--~h-l~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|++...- .. ...---.+|++.|++.|+|||.++...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999987421 01 111111479999999999999987653
No 121
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.10 E-value=3.9e-10 Score=102.28 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=79.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlI 234 (272)
.+.+||++|||+|.++..++... ..+++++|+++.+++.|++.+..... .-..++++++.+|..++- ..+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45599999999999999886433 46899999999999999998743210 112457888888875531 123689999
Q ss_pred EechhhhhcChhh--HHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv~ 268 (272)
++......-+... ..++++.+++.|+|||.++..
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865422211222 247999999999999998764
No 122
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.09 E-value=1.4e-10 Score=101.51 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=73.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||||||+|+.|. +++... ..|+.||..+.+++.|++++... ...++.+.++|...-.+...+|
T Consensus 70 l~pg~~VLeIGtGsGY~aA-lla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------~~~nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAA-LLAHLVGPVGRVVSVERDPELAERARRNLARL------GIDNVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp C-TT-EEEEES-TTSHHHH-HHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------TTHSEEEEES-GGGTTGGG-SE
T ss_pred cCCCCEEEEecCCCcHHHH-HHHHhcCccceEEEECccHHHHHHHHHHHHHh------ccCceeEEEcchhhccccCCCc
Confidence 6788999999999999999 446653 25899999999999999998653 3458999999976544445689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|.|+++.....++ ..+.+.|++||.++.
T Consensus 143 D~I~v~~a~~~ip--------~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 143 DRIIVTAAVPEIP--------EALLEQLKPGGRLVA 170 (209)
T ss_dssp EEEEESSBBSS----------HHHHHTEEEEEEEEE
T ss_pred CEEEEeeccchHH--------HHHHHhcCCCcEEEE
Confidence 9999998875443 235677999999876
No 123
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.09 E-value=7.2e-10 Score=99.61 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=73.9
Q ss_pred CCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CCccee
Q 024100 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fDl 233 (272)
+.+|||+|||+|.++..++ +.+ .+|+++|.|+.+++.|++++.. ..++++++|+.+.... .++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la-~~~~~~~v~~vDis~~al~~A~~N~~~---------~~~~~~~~D~~~~l~~~~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALA-AALDGIELHAADIDPAAVRCARRNLAD---------AGGTVHEGDLYDALPTALRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHHHHH---------cCCEEEEeechhhcchhcCCCEeE
Confidence 4589999999999999874 443 3899999999999999998742 1247899998764321 257999
Q ss_pred eEechhh------hhcChh------------------hHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCI------GHLTDD------------------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl------~hl~d~------------------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++--. ..++.+ -+..++..+.+.|+|||.+++.
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9987421 111111 1347888888999999988753
No 124
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=8.1e-10 Score=101.16 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|-++... ++.+. .|.++|++|..++.|+++... +.....+..-..+....+ ..++||+|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa-~kLGA~~v~g~DiDp~AV~aa~eNa~~-----N~v~~~~~~~~~~~~~~~-~~~~~DvIV 234 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAA-AKLGAKKVVGVDIDPQAVEAARENARL-----NGVELLVQAKGFLLLEVP-ENGPFDVIV 234 (300)
T ss_pred CCCEEEEecCChhHHHHHH-HHcCCceEEEecCCHHHHHHHHHHHHH-----cCCchhhhcccccchhhc-ccCcccEEE
Confidence 6779999999999999977 57665 599999999999999998742 111111222223333332 235999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|-.- .-+..+...+++.|+|||+++.+
T Consensus 235 ANILA-----~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 235 ANILA-----EVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred ehhhH-----HHHHHHHHHHHHHcCCCceEEEE
Confidence 98743 22668999999999999999875
No 125
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=1.5e-09 Score=105.12 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=79.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|..|..++... ...|+++|.|+.|++.+++++... ...+++++++|+.++.+ +++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~v~~~~~Da~~~~~-~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------GITIIETIEGDARSFSP-EEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh------CCCeEEEEeCccccccc-CCCCC
Confidence 3456799999999999998774322 348999999999999999998643 23478999999988753 36899
Q ss_pred eeEec------hhh-------hhcChhh-------HHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQ------WCI-------GHLTDDD-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~------~vl-------~hl~d~~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++. .++ .+.+..+ ...+|.++.+.|+|||.++.+
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99952 111 1222222 236899999999999998764
No 126
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.07 E-value=1.3e-09 Score=94.62 Aligned_cols=112 Identities=19% Similarity=0.333 Sum_probs=71.7
Q ss_pred CCCeeeEeecccch--HHHHH-HHh----cCC---cEEEEeCCHHHHHHHHHhccc---cCCC-----------------
Q 024100 157 QHLVALDCGSGIGR--ITKNL-LIR----YFN---EVDLLEPVSHFLDAARESLAP---ENHM----------------- 206 (272)
Q Consensus 157 ~~~~VLDiGcGtG~--~t~~L-La~----~~~---~v~~vD~S~~mld~A~~~l~~---~~~~----------------- 206 (272)
++.+|+..||+||. +|..+ +.. ... ++.++|+|+.+|+.|++-.=. .+..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999993 22222 223 122 789999999999999862100 0000
Q ss_pred --CCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 207 --~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....-..|+|...|+.+.++..+.||+|+|.+||.|++.+...++++++.+.|+|||++++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00112579999999988444457999999999999999998889999999999999999864
No 127
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.07 E-value=9.4e-10 Score=97.89 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=84.2
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~ 216 (272)
..||..+.. ..++.+|||+|||+|..+..+++.. ..+|+.+|.++++++.|++++... +...++++
T Consensus 57 g~~L~~l~~-------~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-----gl~~~i~~ 124 (234)
T PLN02781 57 GLFLSMLVK-------IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-----GVDHKINF 124 (234)
T ss_pred HHHHHHHHH-------HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEE
Confidence 445665554 2356799999999999988775332 348999999999999999998654 22357999
Q ss_pred EEeCCCCCCC------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 217 FCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 217 ~~~d~~~~~~------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+.+|+.+.-. +.++||+|++... .+....++..+.+.|+|||.+++
T Consensus 125 ~~gda~~~L~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 125 IQSDALSALDQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEccHHHHHHHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999876411 1358999988533 24456889999999999998765
No 128
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=1.2e-09 Score=105.36 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 228 (272)
..++.+|||+|||+|..|..++.... ..|+++|.++.|++.+++++... ...++.++++|+.+++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------GLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEEeCChhhccccccccc
Confidence 34667999999999999998853322 47999999999999999998643 2347899999998764 234
Q ss_pred CcceeeEec------hhhhhcChh-------h-------HHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~------~vl~hl~d~-------~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||.|++. .++++-++. + ..++|.++.+.|+|||.++.+
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 689999952 344443321 1 247899999999999998754
No 129
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.06 E-value=6.1e-10 Score=102.27 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=71.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++... ++.+. +|.++|+++..++.|++++.. +....++.+ ....+. ..++||+|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA-~klGA~~v~a~DiDp~Av~~a~~N~~~-----N~~~~~~~v--~~~~~~--~~~~~dlv 229 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAA-AKLGAKKVVAIDIDPLAVEAARENAEL-----NGVEDRIEV--SLSEDL--VEGKFDLV 229 (295)
T ss_dssp STTSEEEEES-TTSHHHHHH-HHTTBSEEEEEESSCHHHHHHHHHHHH-----TT-TTCEEE--SCTSCT--CCS-EEEE
T ss_pred cCCCEEEEeCCcHHHHHHHH-HHcCCCeEEEecCCHHHHHHHHHHHHH-----cCCCeeEEE--EEeccc--ccccCCEE
Confidence 35679999999999999955 56655 799999999999999999743 122233333 222333 23799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++|-.. +-+..++..+.+.|+|||++|.+
T Consensus 230 vANI~~-----~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 230 VANILA-----DVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp EEES-H-----HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred EECCCH-----HHHHHHHHHHHHhhCCCCEEEEc
Confidence 998775 34678899999999999999875
No 130
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=2.4e-09 Score=103.19 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=77.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
..++.+|||+|||+|..+..++ +.. ..|+++|.|+.|++.+++++... ..+++++++|+.+.+ +..++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la-~~~~~~~v~a~D~s~~~l~~~~~n~~~~-------g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHIL-ELAPQAQVVALDIDAQRLERVRENLQRL-------GLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHc-------CCCeEEEEcCcccchhhcccCC
Confidence 3467799999999999999885 543 48999999999999999998542 224689999987653 22458
Q ss_pred ceeeEech------hhhh-------cChhh-------HHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQW------CIGH-------LTDDD-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~------vl~h-------l~d~~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
||.|++.- ++.+ .+..+ ..++|.++.+.|+|||.++.+
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999422 1111 11111 247899999999999998854
No 131
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=4e-10 Score=98.93 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=85.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
....++|||||.|.+...|+.+...+.+.+|.|-.|++.++..- +..-...++.+|-+.+++.++++|+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q--------dp~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ--------DPSIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC--------CCceEEEEEecchhcccccccchhhhhh
Confidence 44589999999999999998777889999999999999997642 2334567888998888888899999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+..+|..+|-- ..+.+|+..|||+|.|+
T Consensus 144 SlslHW~NdLP--g~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 144 SLSLHWTNDLP--GSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhhhhhccCc--hHHHHHHHhcCCCccch
Confidence 99998876644 79999999999999886
No 132
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.03 E-value=2.3e-09 Score=103.18 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=78.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 230 (272)
..++.+|||+|||+|..|..++ +.. ..|+++|+|+.+++.+++++...+ ....+.+.++|....++ ..++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la-~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-----~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHIL-ELAPQAQVVALDIHEHRLKRVYENLKRLG-----LTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeccccccccccccccc
Confidence 3466799999999999999885 543 589999999999999999986431 11234446677654432 3468
Q ss_pred ceeeEe------chhhhhcChh-------h-------HHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWV------QWCIGHLTDD-------D-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs------~~vl~hl~d~-------~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
||.|++ ..++++.++- + ..++|.++.+.|+|||.++.+
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999994 2355554431 1 247999999999999998865
No 133
>PRK03612 spermidine synthase; Provisional
Probab=99.03 E-value=1.4e-09 Score=107.39 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=80.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHh--ccccCCCCCCCCCceEEEEeCCCCCC-CCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFT-PETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~--l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~ 230 (272)
+++.+|||+|||+|..+..++ ++. .+|+++|++++|++.|+++ +...+. ..-.+++++++.+|..++. ..+++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll-~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL-KYPDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH-hCCCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHhCCCC
Confidence 456799999999999999886 543 5999999999999999984 322110 0012468999999987752 22368
Q ss_pred ceeeEechhhhhcChhh---HHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDD---FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~---~~~~l~~~~r~LkpgG~liv~ 268 (272)
||+|++.......+... -.++++.+++.|+|||.+++.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99999985432211110 136999999999999998864
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=2.3e-09 Score=103.47 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=79.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 231 (272)
..++.+|||+|||+|..|..++... ...|+++|.|+.+++.+++++... ...++.+.+.|...++ ..+++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------KLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhhhhhhhhccC
Confidence 3566799999999999999885433 458999999999999999998653 2346899999988765 234689
Q ss_pred eeeEec---hhhhhcC-hh----------------hHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQ---WCIGHLT-DD----------------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~---~vl~hl~-d~----------------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|++. ..++.+. ++ ...++|.++.+.|+|||.++.+
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999952 1122221 11 1246799999999999988643
No 135
>PHA03412 putative methyltransferase; Provisional
Probab=99.02 E-value=1.6e-09 Score=96.16 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=72.3
Q ss_pred CCeeeEeecccchHHHHHHHh----cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 158 HLVALDCGSGIGRITKNLLIR----YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~----~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+.+|||+|||+|.++..++.+ ...+|++||+++.+++.|++++ .++.++++|+....+ +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----------~~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----------PEATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----------cCCEEEEcchhcccc-cCCccE
Confidence 569999999999999977432 1348999999999999999875 247899999987664 358999
Q ss_pred eEechhhhhcCh----------hhHHHHHHHHHHhcccCcEE
Q 024100 234 IWVQWCIGHLTD----------DDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 234 Ivs~~vl~hl~d----------~~~~~~l~~~~r~LkpgG~l 265 (272)
|+++--++-+.. .-...++.+..+++++|++|
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 999865442221 11346888888877777763
No 136
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=3e-09 Score=102.87 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=78.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 232 (272)
.++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++... ...+++++++|+.++.. -.++||
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------GLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCCcccccchhcccCC
Confidence 456799999999999999885433 358999999999999999988543 23468999999977631 125899
Q ss_pred eeEech------hhhhcC-------hhh-------HHHHHHHHHHhcccCcEEEE
Q 024100 233 VIWVQW------CIGHLT-------DDD-------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~------vl~hl~-------d~~-------~~~~l~~~~r~LkpgG~liv 267 (272)
+|++.- ++.|-+ ..+ ...+|+.+.+.|+|||.++.
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy 377 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVY 377 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 999642 111111 111 13689999999999999874
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.01 E-value=3.1e-09 Score=96.14 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=78.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|..|..++... ...|+++|.++.+++.+++++... ...++.+++.|...++...++||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC------GVLNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEecCCHHHhhhhccCCC
Confidence 3466799999999999999774333 247999999999999999998653 23478999999877654445799
Q ss_pred eeEec------hhhhh-------cChh-------hHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQ------WCIGH-------LTDD-------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~------~vl~h-------l~d~-------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|++. .++.+ .+.. ...++|+++.+.|+|||.++-+
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99952 12211 1111 1236999999999999988643
No 138
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.2e-09 Score=96.94 Aligned_cols=100 Identities=20% Similarity=0.190 Sum_probs=74.3
Q ss_pred eeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+|||+|||+|.++..+ +..++ .|+++|+|+..++.|+++.... ...++.++.+|+.+- ..++||+|++|
T Consensus 113 ~ilDlGTGSG~iai~l-a~~~~~~~V~a~Dis~~Al~~A~~Na~~~------~l~~~~~~~~dlf~~--~~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIAL-AKEGPDAEVIAVDISPDALALARENAERN------GLVRVLVVQSDLFEP--LRGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHH-HhhCcCCeEEEEECCHHHHHHHHHHHHHc------CCccEEEEeeecccc--cCCceeEEEeC
Confidence 7999999999999988 57766 9999999999999999998542 114556666665432 23589999986
Q ss_pred hhhhhcChh-------------------------hHHHHHHHHHHhcccCcEEEEecC
Q 024100 238 WCIGHLTDD-------------------------DFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 238 ~vl~hl~d~-------------------------~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
-- |++.+ -...++.+..+.|+|||.+++--+
T Consensus 184 PP--Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 184 PP--YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CC--CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 32 12111 245788888999999998876543
No 139
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.99 E-value=2.5e-09 Score=105.10 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=75.5
Q ss_pred CCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++... ....+++++++|+.+.. +.++||+|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-----~l~~~v~~~~~D~~~~~-~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-----EVTDRIQIIHSNWFENI-EKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-----CCccceeeeecchhhhC-cCCCccEEEE
Confidence 4689999999999999885333 358999999999999999987432 12346899999975432 2358999998
Q ss_pred chh--------------hhhcC-------h---hhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QWC--------------IGHLT-------D---DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~v--------------l~hl~-------d---~~~~~~l~~~~r~LkpgG~liv 267 (272)
+-. ..|-+ . ..+..+++++.+.|+|||.+++
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 531 11110 0 1134678888999999999875
No 140
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.98 E-value=1.8e-09 Score=98.90 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 136 ~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
.....|++..+.+.. ..+...++|+|||-|.-.+..-......++++|++..-|+.|+++...-..+.....=.+.
T Consensus 100 RnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred hhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeE
Confidence 444556665544333 2456689999999998888775556779999999999999999876432111001112467
Q ss_pred EEEeCCCC------CCCCCCcceeeEechhhhhc--ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 216 FFCVPLQD------FTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 216 ~~~~d~~~------~~~~~~~fDlIvs~~vl~hl--~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++|... +++.+.+||+|-|++++|+- +.+...-+|+++.+.|+|||++|-+
T Consensus 176 f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 176 FIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 88888632 23333359999999999887 3455668999999999999999854
No 141
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.96 E-value=4.7e-09 Score=101.59 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=74.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f 231 (272)
.++.+|||+|||+|.++..+ ++.+..|+++|.|+.|++.|++++... ...+++|+++|+.+.. +.+++|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~l-a~~~~~V~gvD~s~~al~~A~~n~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPL-ARQAAEVVGVEGVEAMVERARENARRN------GLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCCEEEEEeccCCHHHHHH-HHhCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEeChHHhhhhhhhhcCCC
Confidence 45679999999999999977 577789999999999999999987432 2347999999987542 224579
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+++-.-.- ....++.+.+ ++|++.++++
T Consensus 369 D~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 369 DKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEE
Confidence 99998644211 1234444444 6888888775
No 142
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.96 E-value=4.4e-09 Score=97.43 Aligned_cols=100 Identities=13% Similarity=-0.002 Sum_probs=72.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIv 235 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|.|+.|++.|++++... ...+++|+++|+.++.. ..+.||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~l-a~~~~~V~gvD~s~~av~~A~~n~~~~------~l~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHC-ATPGMQLTGIEISAEAIACAKQSAAEL------GLTNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHH-HhcCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEcCHHHHHHhcCCCCeEEE
Confidence 3569999999999999988 577789999999999999999987532 23579999999987643 234799999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++-.- ..+..-+.++...++|++.++++
T Consensus 246 ~dPPr-----~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 246 VNPPR-----RGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred ECCCC-----CCccHHHHHHHHHcCCCeEEEEE
Confidence 87331 11112222233446788877765
No 143
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.91 E-value=4.2e-09 Score=91.61 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIv 235 (272)
...+|||+|||+|.++..++++...+|+++|.++.+++.+++++... ...+++++++|+.++.. ..++||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~------~~~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL------KAGNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEEchHHHHHhhcCCCceEEE
Confidence 34699999999999999766676779999999999999999987542 22468999999876432 234799999
Q ss_pred echhhhhcChhhHHHHHHHHHH--hcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKE--NIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r--~LkpgG~liv~ 268 (272)
++--+.. . -...++..+.. .|+|+|.+++.
T Consensus 127 ~DPPy~~--g-~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 127 VDPPFRK--G-LLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred ECCCCCC--C-hHHHHHHHHHHCCCcCCCcEEEEE
Confidence 9876422 1 12245555554 47899988765
No 144
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.90 E-value=6.6e-09 Score=95.14 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=81.7
Q ss_pred CCeeeEeecccch--HHHHH-HHhc------CCcEEEEeCCHHHHHHHHHhccccC------------------------
Q 024100 158 HLVALDCGSGIGR--ITKNL-LIRY------FNEVDLLEPVSHFLDAARESLAPEN------------------------ 204 (272)
Q Consensus 158 ~~~VLDiGcGtG~--~t~~L-La~~------~~~v~~vD~S~~mld~A~~~l~~~~------------------------ 204 (272)
+.+|+..||+||. +|..+ +... .-+|.++|+|+.+|+.|++-.=...
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999993 23322 2232 1368999999999999987420000
Q ss_pred -CCCCCCCCceEEEEeCCCCCCC-CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 205 -HMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 205 -~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.........|+|...|+.+.++ ..+.||+|+|.+++.|++++...++++++.+.|+|||++++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0001122568999999987543 246899999999999999988889999999999999998864
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.89 E-value=4.7e-09 Score=106.97 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=78.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCC-CceEEEEeCCCCCCC-CCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFTP-ETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~fDl 233 (272)
++.+|||+|||+|.++..++ ..+. .|++||.|+.+++.|++++..- ... .+++|+++|+.++.. ..++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa-~~Ga~~V~~vD~s~~al~~a~~N~~~n-----g~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAA-LGGAKSTTTVDMSNTYLEWAERNFALN-----GLSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCccceEEEEccHHHHHHHcCCCcCE
Confidence 35699999999999999885 5544 6999999999999999998532 112 478999999866421 1358999
Q ss_pred eEechhh-h------hc--ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCI-G------HL--TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl-~------hl--~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++.--. . .. ...++..++..+.++|+|||.+++.
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9985221 0 00 0134567888999999999988764
No 146
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.89 E-value=8.5e-09 Score=98.47 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=77.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCC-CceEEEEeCCCCCCC----CCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFTP----ETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~-~~v~~~~~d~~~~~~----~~~~f 231 (272)
++.+|||+|||+|.++...+.....+|++||.|+.+++.|++++... +.. .+++++++|+.++.. ..++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N-----gl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN-----KLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 45689999999999998765444458999999999999999998532 111 378999999876521 23589
Q ss_pred eeeEechhhhhcCh--------hhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTD--------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d--------~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++.--. ...+ ..+..++..+.+.|+|||.++.
T Consensus 295 DlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 295 DVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred CEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 999987432 1111 1345666778899999998875
No 147
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.86 E-value=9.4e-09 Score=93.37 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.+|..++ +.+.+|+++|+++.|++.+++++. ..+++++++|+.++++++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~-~~~~~v~avE~d~~~~~~~~~~~~---------~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLL-ERAAKVTAVEIDRDLAPILAETFA---------EDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHH-HhCCcEEEEECCHHHHHHHHHhhc---------cCceEEEEChhhcCCHHHcCcceE
Confidence 4566799999999999999885 667899999999999999998762 257999999999887543225888
Q ss_pred EechhhhhcChhhHHHHH
Q 024100 235 WVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l 252 (272)
+++-.. +++.+-+.+++
T Consensus 110 v~NlPY-~iss~ii~~~l 126 (272)
T PRK00274 110 VANLPY-NITTPLLFHLL 126 (272)
T ss_pred EEeCCc-cchHHHHHHHH
Confidence 888664 44433333333
No 148
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.84 E-value=1.8e-08 Score=90.77 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.+|..++ +.+.+|+++|.++.|++.+++++.. ..+++++++|+.+++++ .||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~-~~~~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELA-KRAKKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHH-HhCCEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 4566799999999999999885 6678999999999999999988732 35799999999988654 58999
Q ss_pred EechhhhhcChhh
Q 024100 235 WVQWCIGHLTDDD 247 (272)
Q Consensus 235 vs~~vl~hl~d~~ 247 (272)
+++... +++.+.
T Consensus 96 v~NlPy-~i~s~~ 107 (258)
T PRK14896 96 VSNLPY-QISSPI 107 (258)
T ss_pred EEcCCc-ccCcHH
Confidence 998775 444333
No 149
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.84 E-value=8e-09 Score=90.29 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=83.9
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~ 216 (272)
.||..++. ...+.+||||||++|+.+..++ +. ..+++.+|.++.+.+.|++++..+. ...++++
T Consensus 35 ~lL~~l~~-------~~~~k~vLEIGt~~GySal~la-~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-----~~~~I~~ 101 (205)
T PF01596_consen 35 QLLQMLVR-------LTRPKRVLEIGTFTGYSALWLA-EALPEDGKITTIEIDPERAEIARENFRKAG-----LDDRIEV 101 (205)
T ss_dssp HHHHHHHH-------HHT-SEEEEESTTTSHHHHHHH-HTSTTTSEEEEEESSHHHHHHHHHHHHHTT-----GGGGEEE
T ss_pred HHHHHHHH-------hcCCceEEEeccccccHHHHHH-HhhcccceEEEecCcHHHHHHHHHHHHhcC-----CCCcEEE
Confidence 45655554 2346699999999999999885 54 4589999999999999999987542 3468999
Q ss_pred EEeCCCCCCC------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 217 FCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 217 ~~~d~~~~~~------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+|..++-. +.++||+|++-..= .+...+|..+.+.|+|||.+++-.
T Consensus 102 ~~gda~~~l~~l~~~~~~~~fD~VFiDa~K-----~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 102 IEGDALEVLPELANDGEEGQFDFVFIDADK-----RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EES-HHHHHHHHHHTTTTTSEEEEEEESTG-----GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEeccHhhHHHHHhccCCCceeEEEEcccc-----cchhhHHHHHhhhccCCeEEEEcc
Confidence 9999865311 12589999986642 346688999999999999887644
No 150
>PLN02476 O-methyltransferase
Probab=98.84 E-value=2.1e-08 Score=91.33 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=84.3
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
..|+..++. ..++.+|||+|+|+|..+..++ .. ...++.+|.++++.+.|+++++.++ ...+++
T Consensus 107 g~lL~~L~~-------~~~ak~VLEIGT~tGySal~lA-~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-----l~~~I~ 173 (278)
T PLN02476 107 AQLLAMLVQ-------ILGAERCIEVGVYTGYSSLAVA-LVLPESGCLVACERDSNSLEVAKRYYELAG-----VSHKVN 173 (278)
T ss_pred HHHHHHHHH-------hcCCCeEEEecCCCCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEE
Confidence 345555544 3456799999999999999884 53 3468999999999999999997642 345899
Q ss_pred EEEeCCCCCCC------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 216 FFCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 216 ~~~~d~~~~~~------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.+|+.+.-+ ..++||+|++-.- ......++..+.+.|+|||.+++
T Consensus 174 li~GdA~e~L~~l~~~~~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 174 VKHGLAAESLKSMIQNGEGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEEcCHHHHHHHHHhcccCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999865321 1258999998654 24566899999999999998765
No 151
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.84 E-value=2.1e-08 Score=89.99 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce--
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD-- 232 (272)
..++.+|||+|||+|.+|..+ ++.+..|+++|+++.|++.+++++.. ..+++++++|+.+++++ .||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L-~~~~~~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPL-LKRAKKVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHH-HHhCCcEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 456779999999999999988 57778999999999999999987631 35789999999888754 577
Q ss_pred -eeEechhhhhcChhhHHHHH
Q 024100 233 -VIWVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 233 -lIvs~~vl~hl~d~~~~~~l 252 (272)
+|+++..+ |++.+-+.+++
T Consensus 96 ~~vvsNlPy-~i~~~il~~ll 115 (253)
T TIGR00755 96 LKVVSNLPY-NISSPLIFKLL 115 (253)
T ss_pred ceEEEcCCh-hhHHHHHHHHh
Confidence 77777665 55544433444
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.80 E-value=2.5e-08 Score=96.13 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f 231 (272)
.+..+|||+|||+|.++..+ ++....|+++|.|+.|++.|++++... ...+++|+++|+.++. ..+++|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~l-a~~~~~V~~vE~~~~av~~a~~n~~~~------~~~nv~~~~~d~~~~l~~~~~~~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPL-AKQAKSVVGIEVVPESVEKAQQNAELN------GIANVEFLAGTLETVLPKQPWAGQIP 363 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHH-HHhCCEEEEEEcCHHHHHHHHHHHHHh------CCCceEEEeCCHHHHHHHHHhcCCCC
Confidence 45579999999999999987 577789999999999999999987532 2358999999986531 223579
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++.-.= ..-. ..+++.+.+ ++|++.++++
T Consensus 364 D~vi~dPPr--~G~~--~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 364 DVLLLDPPR--KGCA--AEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CEEEECcCC--CCCC--HHHHHHHHh-cCCCEEEEEc
Confidence 999975431 1101 245665554 7898888765
No 153
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.79 E-value=4.1e-08 Score=86.48 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCc
Q 024100 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (272)
Q Consensus 136 ~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~ 213 (272)
...-.||..++. ...+.+|||||.++|+.+..++...- .+++.+|.++++.+.|++++..+. ....
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-----~~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-----VDDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-----Ccce
Confidence 455677777766 34677999999999999998853332 368899999999999999997652 3345
Q ss_pred eEEEE-eCCCCC-C-CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 214 TNFFC-VPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 214 v~~~~-~d~~~~-~-~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+..+. +|..+. . ...++||+|++-..= .....+|..+.+.|+|||.++.
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDadK-----~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDADK-----ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCCh-----hhCHHHHHHHHHHhCCCcEEEE
Confidence 77777 465432 2 234799999986552 3455899999999999998765
No 154
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.78 E-value=6.6e-09 Score=92.69 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=67.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+....|.|+|||-+.++. .....|.-.|..+ .+-+++.+|+.+.|.++++.|++|
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------------~~~~V~~cDm~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA---------------------VNERVIACDMRNVPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeec---------------------CCCceeeccccCCcCccCcccEEE
Confidence 456789999999999775 3445676665321 244677899999999999999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+.+|+- +| +..|+++.+|+|++||.+.+.|
T Consensus 234 ~CLSLMg-tn--~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 234 FCLSLMG-TN--LADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred eeHhhhc-cc--HHHHHHHHHHHhccCceEEEEe
Confidence 9888744 33 4489999999999999998876
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.78 E-value=1.7e-08 Score=93.52 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+-+...|||+|||||.++. +.++.+ .+|.+||.|. +.+.|++.+.. +.....++++.+.++++..+.++.|+
T Consensus 58 lf~dK~VlDVGcGtGILS~-F~akAGA~~V~aVe~S~-ia~~a~~iv~~-----N~~~~ii~vi~gkvEdi~LP~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSM-FAAKAGARKVYAVEASS-IADFARKIVKD-----NGLEDVITVIKGKVEDIELPVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHH-HHHHhCcceEEEEechH-HHHHHHHHHHh-----cCccceEEEeecceEEEecCccceeE
Confidence 4567799999999999999 445664 5899999888 55888887642 23456799999999998766579999
Q ss_pred eEechhhhhcC-hhhHHHHHHHHHHhcccCcEEE
Q 024100 234 IWVQWCIGHLT-DDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 234 Ivs~~vl~hl~-d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+|-|.=..+- +.=+..+|-.=-+.|+|||.++
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 99877532221 1112233333358999999986
No 156
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.8e-08 Score=85.07 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=60.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
-.+..|+|+|||||.++...+ -.+ ..|.+||+++++++.++++... ...++.|+++|+.++. ..+|.+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~-~lGa~~V~~vdiD~~a~ei~r~N~~~-------l~g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAA-LLGASRVLAVDIDPEALEIARANAEE-------LLGDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHH-hcCCcEEEEEecCHHHHHHHHHHHHh-------hCCceEEEEcchhhcC---CccceE
Confidence 356689999999999999774 444 6999999999999999999753 4568999999999884 578988
Q ss_pred Eech
Q 024100 235 WVQW 238 (272)
Q Consensus 235 vs~~ 238 (272)
++|-
T Consensus 113 imNP 116 (198)
T COG2263 113 IMNP 116 (198)
T ss_pred EECC
Confidence 8764
No 157
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.75 E-value=5.9e-08 Score=92.04 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=74.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-CCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fDlIv 235 (272)
+..+|||+|||+|.++..++ ..+..|++||.++.+++.|++++... ...+++|+++|+.++... .++||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~~N~~~~------~~~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQQSAQML------GLDNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHHhcCCCCCEEE
Confidence 34689999999999999884 66789999999999999999987532 224799999999775421 24699999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.=--..+ ++ .+++.+. .++|++.++++-
T Consensus 306 ~DPPr~G~-~~---~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 306 VNPPRRGI-GK---ELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCCCCCC-cH---HHHHHHH-hcCCCeEEEEEe
Confidence 87442121 12 3444443 478999888763
No 158
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=6.4e-08 Score=85.75 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=75.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCC---CC---------------------
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHM---AP--------------------- 208 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~---~~--------------------- 208 (272)
...+..+|||||-.|.+|..++ +.|. .+.|+|+++..|..|+++++-.... ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~ia-k~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIA-KDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHH-HhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3456789999999999999884 6533 7899999999999999987432110 00
Q ss_pred -----CCCCceEE-------EEeCCCCCCCCCCcceeeEec----hhhhhcC--hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 209 -----DMHKATNF-------FCVPLQDFTPETGRYDVIWVQ----WCIGHLT--DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 209 -----~~~~~v~~-------~~~d~~~~~~~~~~fDlIvs~----~vl~hl~--d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....++.| ...|+.++ ....||+|.|- |+ ||. |+.+..||+++.++|.|||++|+-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~--~~~~fDiIlcLSiTkWI--HLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDM--IQPEFDIILCLSITKWI--HLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhh--ccccccEEEEEEeeeeE--ecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00011111 12223322 33479999963 44 665 577999999999999999999863
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.75 E-value=4.4e-08 Score=83.22 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=69.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 228 (272)
..++.+|||+|||+|-.+..+ +.. ..+|+++|..+ .++..+.++..-. .....++.+...++.+-. ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~-a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~---~~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAA-AKLFGAARVVLTDYNE-VLELLRRNIELNG---SLLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHH-HHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-
T ss_pred hcCCceEEEECCccchhHHHH-HhccCCceEEEeccch-hhHHHHHHHHhcc---ccccccccCcEEEecCccccccccc
Confidence 346679999999999999966 566 67999999988 8999988875310 012457888888886521 233
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||+|+.+-++.. +..+..+++-+.++|+|+|.+++.
T Consensus 118 ~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 118 HSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred ccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999965 455668999999999999876654
No 160
>PLN02823 spermine synthase
Probab=98.74 E-value=1.2e-07 Score=88.82 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=79.0
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlI 234 (272)
.+.+||.+|+|.|.+++.++... ..++++||+++.+++.|++.+..... .-..++++++.+|...+- ..+++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccEE
Confidence 46699999999999999887432 46899999999999999998753210 012578999999987652 233689999
Q ss_pred Eechh-------hhhcChhhHHHHHH-HHHHhcccCcEEEEe
Q 024100 235 WVQWC-------IGHLTDDDFVSFFK-RAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~v-------l~hl~d~~~~~~l~-~~~r~LkpgG~liv~ 268 (272)
++-.. ..++-. .+|++ .|++.|+|||.++..
T Consensus 181 i~D~~dp~~~~~~~~Lyt---~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYT---KSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCCCccccCcchhhcc---HHHHHHHHHHhcCCCcEEEEe
Confidence 97621 112222 25888 899999999998754
No 161
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.73 E-value=4.3e-08 Score=90.16 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||||||+|.+|..++ +...+|+++|+++.|++.+++++... ....+++++++|+.+++.+ .||+|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll-~~~~~V~avEiD~~li~~l~~~~~~~-----~~~~~v~ii~~Dal~~~~~--~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLL-QLAKKVIAIEIDPRMVAELKKRFQNS-----PLASKLEVIEGDALKTEFP--YFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHH-HhCCcEEEEECCHHHHHHHHHHHHhc-----CCCCcEEEEECCHhhhccc--ccCEE
Confidence 4567799999999999999885 66789999999999999999987431 1235899999999877643 69999
Q ss_pred EechhhhhcChhhHHHHH
Q 024100 235 WVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l 252 (272)
+++... +++.+.+..++
T Consensus 106 vaNlPY-~Istpil~~ll 122 (294)
T PTZ00338 106 VANVPY-QISSPLVFKLL 122 (294)
T ss_pred EecCCc-ccCcHHHHHHH
Confidence 987665 55555544444
No 162
>PLN02672 methionine S-methyltransferase
Probab=98.72 E-value=8e-08 Score=101.11 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=75.7
Q ss_pred CCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCC----------CCCCCCceEEEEeCCCCCC
Q 024100 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHM----------APDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~----------~~~~~~~v~~~~~d~~~~~ 225 (272)
+.+|||+|||+|.++..++ ..+ .+|+++|+|+.+++.|++++...... ......+++|+++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La-~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIA-EKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4589999999999999884 544 48999999999999999987531100 0011246999999987653
Q ss_pred CCC-CcceeeEechh--------------hhh------------cC-------hh---hHHHHHHHHHHhcccCcEEEE
Q 024100 226 PET-GRYDVIWVQWC--------------IGH------------LT-------DD---DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 226 ~~~-~~fDlIvs~~v--------------l~h------------l~-------d~---~~~~~l~~~~r~LkpgG~liv 267 (272)
... .+||+||+|=- ..| .. ++ -..+++.+..+.|+|||.+++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 221 36999997632 111 00 00 125678888899999998875
No 163
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1e-07 Score=85.04 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=83.2
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
++.++.+|||.|.|+|.+|..|+.-.+ .+|+.+|.-+.+.+.|++|+..+ ....++++...|+.+...++ .|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-----~l~d~v~~~~~Dv~~~~~~~-~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-----GLGDRVTLKLGDVREGIDEE-DV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----ccccceEEEecccccccccc-cc
Confidence 478899999999999999998842233 48999999999999999999764 23345899999998876554 89
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|+. -+++|- .++..+++.|+|||.+++-
T Consensus 165 Dav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 165 DAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred CEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEE
Confidence 99886 455676 8999999999999988753
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.70 E-value=9.9e-08 Score=85.68 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=84.1
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
..||..++. ...+.+|||||+++|..|..++ .. ..+++.+|.++++.+.|++++..+ +...+|+
T Consensus 68 g~lL~~l~~-------~~~ak~iLEiGT~~GySal~la-~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----g~~~~I~ 134 (247)
T PLN02589 68 GQFLNMLLK-------LINAKNTMEIGVYTGYSLLATA-LALPEDGKILAMDINRENYELGLPVIQKA-----GVAHKID 134 (247)
T ss_pred HHHHHHHHH-------HhCCCEEEEEeChhhHHHHHHH-hhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----CCCCceE
Confidence 456666654 2346699999999999999874 43 348999999999999999999754 2346899
Q ss_pred EEEeCCCCCCCC-------CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 216 FFCVPLQDFTPE-------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 216 ~~~~d~~~~~~~-------~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.+++.+.-+. .++||+|++-.- ......+|..+.+.|+|||.|++
T Consensus 135 ~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 135 FREGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE
Confidence 999998664211 258999998644 23355788889999999998764
No 165
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.70 E-value=2.7e-08 Score=86.63 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=55.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++...|.|+|||.+.++..+ +....|.-.|..+ .+-.+..+|+...|.++++.|++|
T Consensus 71 ~~~~viaD~GCGdA~la~~~--~~~~~V~SfDLva---------------------~n~~Vtacdia~vPL~~~svDv~V 127 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--PNKHKVHSFDLVA---------------------PNPRVTACDIANVPLEDESVDVAV 127 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH----S---EEEEESS----------------------SSTTEEES-TTS-S--TT-EEEEE
T ss_pred CCCEEEEECCCchHHHHHhc--ccCceEEEeeccC---------------------CCCCEEEecCccCcCCCCceeEEE
Confidence 44569999999999999855 3334677776432 122467899999999989999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+.+|.-- ++..++.+..|+|||||.+.+.|
T Consensus 128 fcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 128 FCLSLMGT---NWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp EES---SS----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEhhhhCC---CcHHHHHHHHheeccCcEEEEEE
Confidence 99998653 34479999999999999999877
No 166
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.69 E-value=1.6e-07 Score=81.71 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=70.7
Q ss_pred eeeEeecccchHHHHHHHhcCCcEE--EEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCC------CCC
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVD--LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTP------ETG 229 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~--~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~------~~~ 229 (272)
+|||||||||..+.++ ++.++.++ -.|+++..+.--++.+.... ......-+..|+.+ ++. ..+
T Consensus 28 ~vLEiaSGtGqHa~~F-A~~lP~l~WqPSD~~~~~~~sI~a~~~~~~-----~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYF-AQALPHLTWQPSDPDDNLRPSIRAWIAEAG-----LPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred eEEEEcCCccHHHHHH-HHHCCCCEEcCCCCChHHHhhHHHHHHhcC-----CcccCCCeEeecCCCCCccccccccCCC
Confidence 5999999999999988 68888654 35766666443333322211 00111122233322 121 235
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+||.|++.+++|-.+......+|+...+.|++||.+++--
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 8999999999988788888899999999999999998753
No 167
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.69 E-value=1.5e-07 Score=79.20 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 227 (272)
...+..|||+|.|||-+|+.+|++.. ..++++|.|+.+.....+.. +.++++.+|..++. ..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------PGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------CCccccccchhhHHHHHhhcC
Confidence 45666899999999999999986653 47899999999999998876 34568888887664 23
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
...||.|+|.--+-.++-....++++.+...|.+||.++
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 458999999988888887778899999999999999876
No 168
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.69 E-value=1.1e-07 Score=82.36 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=73.7
Q ss_pred eeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCCCCcceee
Q 024100 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDVI 234 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fDlI 234 (272)
.+||||||.|.+...++ ...+ .+.|+|++...+..+.+++... ...|+.++++|+..+ -++++++|-|
T Consensus 20 l~lEIG~G~G~~l~~~A-~~~Pd~n~iGiE~~~~~v~~a~~~~~~~------~l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA-KRNPDINFIGIEIRKKRVAKALRKAEKR------GLKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEET-TTSHHHHHHH-HHSTTSEEEEEES-HHHHHHHHHHHHHH------TTSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred eEEEecCCCCHHHHHHH-HHCCCCCEEEEecchHHHHHHHHHHHhh------cccceEEEEccHHHHHhhcccCCchheE
Confidence 89999999999999884 5544 7899999999999998887543 567999999998773 1345799999
Q ss_pred EechhhhhcChhh------HHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDD------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~------~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.++.==+.-... -..++..+.+.|+|||.|.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 9876421110000 126999999999999988654
No 169
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.60 E-value=1.7e-07 Score=90.82 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=70.6
Q ss_pred CCeeeEeecccchHHHHHHHhcC------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
...|||+|||+|-++...+ +.+ .+|.+||-|+.++...++.+.. ..-..+|+++.+|++++..+ .++
T Consensus 187 ~~vVldVGAGrGpL~~~al-~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-----n~w~~~V~vi~~d~r~v~lp-ekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFAL-QAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-----NGWGDKVTVIHGDMREVELP-EKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHH-HTTHHHCCESEEEEEESSTHHHHHHHHHHHH-----TTTTTTEEEEES-TTTSCHS-S-E
T ss_pred ceEEEEeCCCccHHHHHHH-HHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-----cCCCCeEEEEeCcccCCCCC-Cce
Confidence 4689999999999987553 443 5999999998877776655322 12346799999999999876 499
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+|||-+.=.+..++-..+.|....+.|+|||.+|
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99998665222233434467888889999999876
No 170
>PRK00536 speE spermidine synthase; Provisional
Probab=98.59 E-value=2.7e-07 Score=83.45 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+.+.+||=||.|.|...+++| ++-.+|++||+++.+++.+++.++.... .-.+++++++.. +.+- ..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvL-kh~~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~~--~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLF-KYDTHVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLDL--DIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHH-CcCCeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhhc--cCCcCCEEE
Confidence 567899999999999999997 6656999999999999999997754321 234677777752 2111 235899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+-.. .+. .|++.|++.|+|||.++.+
T Consensus 145 vDs~-----~~~--~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 145 CLQE-----PDI--HKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EcCC-----CCh--HHHHHHHHhcCCCcEEEEC
Confidence 8753 233 7999999999999998864
No 171
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.59 E-value=3.5e-07 Score=81.20 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=57.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHH-HHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~-A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||||.+|..++ +. ...|+++|+++.|+.. .+++.... .....|++ ..+++++.++-..||++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~-~~ga~~v~avD~~~~~l~~~l~~~~~v~----~~~~~ni~--~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL-QKGAKEVYGVDVGYNQLAEKLRQDERVK----VLERTNIR--YVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH-HcCCCEEEEEeCCHHHHHHHHhcCCCee----EeecCCcc--cCCHhHcCCCceeeeEE
Confidence 45689999999999999885 55 4689999999988876 33321100 00112222 33344443222478988
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+++.++ .|..+.+.|+| |.++
T Consensus 148 fiS~~~----------~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 148 FISLIS----------ILPELDLLLNP-NDLT 168 (228)
T ss_pred EeehHh----------HHHHHHHHhCc-CeEE
Confidence 887664 25556677777 6544
No 172
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.55 E-value=1.2e-06 Score=67.22 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=69.5
Q ss_pred eeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCCCC-Ccceee
Q 024100 161 ALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPET-GRYDVI 234 (272)
Q Consensus 161 VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fDlI 234 (272)
++|+|||+|..+ .+ .... ..++++|+++.|++.++..... . ....+.+...+... +++.. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LL-ARLGGRGAYVVGVDLSPEMLALARARAEG-A-----GLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HH-HHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-----CCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999976 23 3333 3788899999999996554311 0 01116788888765 55554 389999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
.+...+++.. ....+.++.+.|+|+|.++..+.
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEec
Confidence 4445554443 45899999999999998877654
No 173
>PRK04148 hypothetical protein; Provisional
Probab=98.53 E-value=9.8e-07 Score=72.02 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCCeeeEeecccch-HHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-Ccceee
Q 024100 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~-~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlI 234 (272)
++.++||||||+|. ++..| ++.+.+|+++|.++..++.++++ .++++..|+.+.++.- ..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L-~~~G~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL-KESGFDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH-HHCCCEEEEEECCHHHHHHHHHh-------------CCeEEECcCCCCCHHHHhcCCEE
Confidence 44689999999996 88866 68899999999999999988775 3588899997765432 479999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcc
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIA 260 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lk 260 (272)
++... .+|+...+-++.+.+.
T Consensus 82 ysirp-----p~el~~~~~~la~~~~ 102 (134)
T PRK04148 82 YSIRP-----PRDLQPFILELAKKIN 102 (134)
T ss_pred EEeCC-----CHHHHHHHHHHHHHcC
Confidence 98765 3666677777765543
No 174
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.53 E-value=1e-06 Score=80.13 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=97.8
Q ss_pred CcchhhhhHHHHHHHHHhccCCCc-cCCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCC
Q 024100 130 VNEVDIKGSEAFLQMLLSDRFPNA-RNNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENH 205 (272)
Q Consensus 130 ~s~~d~~~s~~~L~~ll~~~l~~~-~~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~ 205 (272)
+....+...+..+..++.+.+... .-..+.+||||.||.|+.....+...- ..+.+.|.|+..++..++.++..
T Consensus 107 iGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-- 184 (311)
T PF12147_consen 107 IGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER-- 184 (311)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--
Confidence 333445555556666655433210 123677999999999999999875543 47889999999999999988642
Q ss_pred CCCCCCCceEEEEeCCCCCC-C--CCCcceeeEechhhhhcChhhHH-HHHHHHHHhcccCcEEEEe
Q 024100 206 MAPDMHKATNFFCVPLQDFT-P--ETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 206 ~~~~~~~~v~~~~~d~~~~~-~--~~~~fDlIvs~~vl~hl~d~~~~-~~l~~~~r~LkpgG~liv~ 268 (272)
+....++|.++|+.+.. . ..-.+++++++..++.|+|.+++ ..|+-+.+++.|||++|-+
T Consensus 185 ---gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 185 ---GLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred ---CCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 23344599999986642 1 12268999999999999997755 5899999999999999854
No 175
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.53 E-value=4.1e-07 Score=78.45 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=71.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--C-CCC-cce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-ETG-RYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~-~fD 232 (272)
.+.+|||++||+|.++.+++++....|++||.++.+++.+++++...+ ...+++++++|+.++. . ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~-----~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK-----SGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CcccEEEEehhHHHHHHHhhccCCCce
Confidence 456899999999999999864444589999999999999999875431 1236889999985531 1 112 478
Q ss_pred eeEechhhhhcChhhHHHHHHHHH--HhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAK--ENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~--r~LkpgG~liv~ 268 (272)
+|+..=-+.. .....++..+. .+|+++|.+++-
T Consensus 124 vv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 124 VIYLDPPFFN---GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 8887544321 11224444443 468888877654
No 176
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.53 E-value=5.5e-07 Score=82.34 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=81.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDl 233 (272)
.+.+||=||.|.|.+++.++ ++. .++++||+++..++.|++.+...... ..+++++++..|..++-- ...+||+
T Consensus 76 ~pk~VLiiGgGdG~tlRevl-kh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVL-KHLPVERITMVEIDPAVIELARKYLPEPSGG--ADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCeEEEECCCccHHHHHHH-hcCCcceEEEEEcCHHHHHHHHHhccCcccc--cCCCceEEEeccHHHHHHhCCCcCCE
Confidence 34699999999999999996 654 69999999999999999998765221 126899999999877632 2238999
Q ss_pred eEechhh--hhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCI--GHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl--~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++-..= ..-+.---..|++.|+++|+++|.++..
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9964331 1100000137999999999999999876
No 177
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.52 E-value=8.8e-07 Score=80.37 Aligned_cols=111 Identities=14% Similarity=0.247 Sum_probs=81.7
Q ss_pred CCCeeeEeecccc----hHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHhc-c------cc------CCC------
Q 024100 157 QHLVALDCGSGIG----RITKNLLIRYF-------NEVDLLEPVSHFLDAARESL-A------PE------NHM------ 206 (272)
Q Consensus 157 ~~~~VLDiGcGtG----~~t~~LLa~~~-------~~v~~vD~S~~mld~A~~~l-~------~~------~~~------ 206 (272)
.+-+|.-.||+|| .++..| .+.+ -++.++|+|..+|+.|+.-. . .. +.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l-~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLL-LEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHH-HHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 4679999999999 333322 3333 36799999999999997521 1 00 000
Q ss_pred ----CCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 207 ----APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 207 ----~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.....|.|...|+.+-.+..+.||+|+|.+|+.+++.+...+++.+++..|+|||++++-
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 01112568888888876553446899999999999999988889999999999999999863
No 178
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.52 E-value=6.3e-07 Score=81.64 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=72.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+.+|||+|||+|..+..+ ... ..+++++|.|+.|++.++..+.... ......+......+.... ...|
T Consensus 32 f~P~~vLD~GsGpGta~wAa-~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-----~~~~~~~~~~~~~~~~~~-~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAA-REVWPSLKEYTCVDRSPEMLELAKRLLRAGP-----NNRNAEWRRVLYRDFLPF-PPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHH-HHHhcCceeeeeecCCHHHHHHHHHHHhccc-----ccccchhhhhhhcccccC-CCCc
Confidence 45679999999999877644 343 4588999999999999988764321 111111111111111111 2459
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|+++++|..+++.....+++++-+.+.+ .+|+.|.
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 99999999999987777888888777766 8888875
No 179
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.50 E-value=6.9e-07 Score=84.17 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=66.9
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-----------
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~----------- 227 (272)
.+|||+|||+|.++..| ++.+..|++||.|++|++.|++++... ...+++|+++|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~l-a~~~~~v~~vE~~~~av~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLAL-AQNFRRVLATEIAKPSVNAAQYNIAAN------NIDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHH-HHhCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999966 687789999999999999999987432 234789999998764321
Q ss_pred -----CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 -----~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...||+|+..=- .-.-.. .+++.+.+ |++.++++
T Consensus 272 ~~~~~~~~~d~v~lDPP--R~G~~~--~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP--RAGLDP--DTCKLVQA---YERILYIS 310 (353)
T ss_pred ccccccCCCCEEEECCC--CCCCcH--HHHHHHHc---CCcEEEEE
Confidence 013798886432 100011 34444433 67777765
No 180
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=4.3e-07 Score=81.87 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=72.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC----C-CCCCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ----D-FTPETG 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~----~-~~~~~~ 229 (272)
..+..+||+|||+|.++..++... -..|++||.|+..+..|.++..+.+ ....+..+..+++ + .+...+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~-----l~g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK-----LSGRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh-----hcCceEEEecccccccccccccccC
Confidence 345579999999999999997554 3377999999999999999886542 2345555544333 2 222347
Q ss_pred cceeeEechhhhhcChhh--------------------------HHHHHHHHHHhcccCcEEEE
Q 024100 230 RYDVIWVQWCIGHLTDDD--------------------------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~--------------------------~~~~l~~~~r~LkpgG~liv 267 (272)
++|+++||-- |+.++| +..++.-..|.|+|||+++.
T Consensus 222 ~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 222 KIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ceeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 9999999743 222222 23445555699999998864
No 181
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.48 E-value=7.3e-07 Score=84.29 Aligned_cols=96 Identities=21% Similarity=0.172 Sum_probs=67.3
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--C---------
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--E--------- 227 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~--------- 227 (272)
.+|||++||+|.++..+ ++.+..|++||.|+.|++.|++++... ...+++|+++|+.++.. .
T Consensus 208 ~~vLDl~~G~G~~sl~l-a~~~~~v~~vE~~~~ai~~a~~N~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLAL-ARNFRRVLATEISKPSVAAAQYNIAAN------GIDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHH-HhhCCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHhhcccccccc
Confidence 47999999999999966 688889999999999999999987432 23479999999876421 0
Q ss_pred -----CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 -----~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+||+|+..=-= -.-.+ ++++.+.+ |++.++++
T Consensus 281 ~~~~~~~~~D~v~lDPPR--~G~~~--~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR--AGLDD--ETLKLVQA---YERILYIS 319 (362)
T ss_pred cccccCCCCCEEEECCCC--CCCcH--HHHHHHHc---cCCEEEEE
Confidence 1258999874331 11011 34444433 57776664
No 182
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.44 E-value=1.6e-06 Score=80.23 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=75.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+..|||+|||.|.++. ++++. ..+|.+||.|. |.+.|+..++. +....+|.++.+-++++..+ ++.|+|
T Consensus 176 F~~kiVlDVGaGSGILS~-FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~-----N~~~~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSF-FAAQAGAKKVYAVEASE-MAQYARKLVAS-----NNLADRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred cCCcEEEEecCCccHHHH-HHHHhCcceEEEEehhH-HHHHHHHHHhc-----CCccceEEEccCccccccCc-hhccEE
Confidence 456789999999999999 54565 45899999887 99999987753 22457899999999999876 589999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
++--.=..+-++...+..-..++.|+|.|..+
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 97432111223333333334569999999765
No 183
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.43 E-value=1.2e-06 Score=78.66 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCC-CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTP-ETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~-~~~ 229 (272)
+.++++|||.|.|+|.+|..|+...+ .+|.-.|..+++.+.|++++... +...++++.+.|+.. |+. .+.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-----gl~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-----GLDDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-----TCCTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-----CCCCCceeEecceecccccccccC
Confidence 67899999999999999998853333 48899999999999999998764 235689999999853 421 125
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhc-ccCcEEEE
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENI-ARSGTFLL 267 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~L-kpgG~liv 267 (272)
.+|.|+. -+++|- .++..+.++| +|||.+..
T Consensus 113 ~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 113 DFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp SEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEE
T ss_pred cccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEE
Confidence 7999876 455676 7899999999 89998865
No 184
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.42 E-value=1.2e-06 Score=77.81 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=77.5
Q ss_pred CeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCCCCccee
Q 024100 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fDl 233 (272)
..+||||||.|.+...+ |+..| .+.|||+....+..|-+++... ...|+.+++.|+..+ -+++++.|-
T Consensus 50 pi~lEIGfG~G~~l~~~-A~~nP~~nfiGiEi~~~~v~~~l~k~~~~------~l~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEM-AKKNPEKNFLGIEIRVPGVAKALKKIKEL------GLKNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHH-HHHCCCCCEEEEEEehHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 48999999999999999 57766 6699999999999998887543 234999999998654 234469999
Q ss_pred eEechhhh-----h----cChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIG-----H----LTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~-----h----l~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+.++.== | ++. ..+++.+.+.|+|||.|...
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~---~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQ---PEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEEECCCCCCCccccccccCC---HHHHHHHHHHccCCCEEEEE
Confidence 99877521 1 112 26999999999999998643
No 185
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.39 E-value=6.1e-07 Score=80.52 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=77.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCC-cc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~-~f 231 (272)
+.+.+||=||.|.|..+..++ ++. .++++||+++.+++.|++.+..... ....++++++..|...+- -..+ +|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell-~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~--~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELL-KHPPVESITVVEIDPEVVELARKYFPEFSE--GLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHT-TSTT-SEEEEEES-HHHHHHHHHHTHHHHT--TGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CCcCceEEEcCCChhhhhhhh-hcCCcceEEEEecChHHHHHHHHhchhhcc--ccCCCceEEEEhhhHHHHHhccCCcc
Confidence 367799999999999999885 554 5899999999999999998754211 023578999999986542 1224 89
Q ss_pred eeeEechhhhhcChhh--HHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++-..-..-+... -.+|++.+++.|+|||.++..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 9999633211111111 137999999999999999864
No 186
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.7e-06 Score=78.02 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCC-ccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fDl 233 (272)
..++..|||||+|.|.+|..|+ +....|++||.++.+++..++.+. ...+++++.+|+..++++.. .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~--------~~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLL-ERAARVTAIEIDRRLAEVLKERFA--------PYDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHH-hhcCeEEEEEeCHHHHHHHHHhcc--------cccceEEEeCchhcCcchhhcCCCE
Confidence 4557899999999999999885 888899999999999999999873 35689999999999887632 5788
Q ss_pred eEechhhhhcChhhHHHHH
Q 024100 234 IWVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l 252 (272)
|+++--. +++.+-+.+++
T Consensus 99 vVaNlPY-~Isspii~kll 116 (259)
T COG0030 99 VVANLPY-NISSPILFKLL 116 (259)
T ss_pred EEEcCCC-cccHHHHHHHH
Confidence 8887654 55555433333
No 187
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.34 E-value=1.6e-06 Score=75.90 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCC---CCCCCCceEEEEeCCCCCCCCC--
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTPET-- 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~---~~~~~~~v~~~~~d~~~~~~~~-- 228 (272)
+.+....+|+|||.|+.....+... +..+.|||..+...+.|+......+.. -......+++..+|+.+.+...
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 5678899999999999988664343 556999999999888887644332110 0112457788888886543211
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
...|+|++++.. + ++++...|.+....||+|-+||-..+|
T Consensus 120 ~s~AdvVf~Nn~~-F--~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 120 WSDADVVFVNNTC-F--DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp GHC-SEEEE--TT-T---HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred hcCCCEEEEeccc-c--CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 257999998764 2 566777888888999999999877655
No 188
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.33 E-value=1.2e-05 Score=74.75 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=80.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEE--EEeCCCCC----
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF--FCVPLQDF---- 224 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~--~~~d~~~~---- 224 (272)
.+...++|+|||.|+=+..||... ......+|+|..+|+.+.+++.. ...+.+.+ +++|+.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~------~~~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL------GNFSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh------ccCCCeEEEEEEecHHHHHhhc
Confidence 456689999999999988776433 23589999999999999998851 12355555 78887542
Q ss_pred CC--CCCcceeeE-echhhhhcChhhHHHHHHHHHH-hcccCcEEEEec
Q 024100 225 TP--ETGRYDVIW-VQWCIGHLTDDDFVSFFKRAKE-NIARSGTFLLSH 269 (272)
Q Consensus 225 ~~--~~~~fDlIv-s~~vl~hl~d~~~~~~l~~~~r-~LkpgG~liv~E 269 (272)
+. ......+|+ ...+|++++.++...||+++++ .|+|||.+++.=
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 11 112345555 5579999999999999999999 999999887643
No 189
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.33 E-value=6.4e-07 Score=86.65 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=66.1
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEE--EeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDL--LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~--vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
..+||+|||+|.++..|+.+..-.+.. -|..+..++.|-++- .+. -+-...-+.+++++++||+|-|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----------vpa-~~~~~~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----------VPA-MIGVLGSQRLPFPSNAFDMVHC 187 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----------cch-hhhhhccccccCCccchhhhhc
Confidence 478999999999999997333222111 134444566665431 111 1112234678888899999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.|+......+ .-+|-++.|+|+|||+++.+-
T Consensus 188 src~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 188 SRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ccccccchhcc-cceeehhhhhhccCceEEecC
Confidence 99876654432 268999999999999998764
No 190
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.31 E-value=1.3e-06 Score=74.73 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CC--------cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FN--------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~--------~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~ 223 (272)
..++..+||--||+|.+..+.+ .. .. .+.+.|.++.+++.|++++..++ ....+.+.+.|+.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa-~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-----~~~~i~~~~~D~~~ 99 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAA-LMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-----VEDYIDFIQWDARE 99 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHH-HHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGG
T ss_pred CCCCCEEeecCCCCCHHHHHHH-HHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-----cCCceEEEecchhh
Confidence 4566799999999999998763 32 22 27799999999999999987542 34568999999999
Q ss_pred CCCCCCcceeeEechhhhhc-Ch-----hhHHHHHHHHHHhcccCcEEEEec
Q 024100 224 FTPETGRYDVIWVQWCIGHL-TD-----DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 224 ~~~~~~~fDlIvs~~vl~hl-~d-----~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.++++|+|+++--...- .. .-...+++++.++|++...++..+
T Consensus 100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 98556799999997654432 21 113467888999999965655554
No 191
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.31 E-value=3.4e-06 Score=78.50 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=56.8
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE-eCCCCC----CCCCCc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDF----TPETGR 230 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~-~d~~~~----~~~~~~ 230 (272)
...++||||||+|.+..-++++. ..+++++|+++.+++.|++++..- ......+.+.. .+..++ ..+.+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N----p~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN----PGLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----cCCcCcEEEEEccchhhhhhcccccCCc
Confidence 45799999999998888564333 458999999999999999998531 01234577654 333222 112458
Q ss_pred ceeeEechhhh
Q 024100 231 YDVIWVQWCIG 241 (272)
Q Consensus 231 fDlIvs~~vl~ 241 (272)
||+|+|+=-++
T Consensus 190 fDlivcNPPf~ 200 (321)
T PRK11727 190 FDATLCNPPFH 200 (321)
T ss_pred eEEEEeCCCCc
Confidence 99999998763
No 192
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.30 E-value=4e-07 Score=79.14 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
..+.++||+|+|.|-+|..+ ++.|.+|.++|.|..|++..+.+- ... ....++...+-+||+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m-~p~feevyATElS~tMr~rL~kk~----------ynV-----l~~~ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRM-APTFEEVYATELSWTMRDRLKKKN----------YNV-----LTEIEWLQTDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhh-cchHHHHHHHHhhHHHHHHHhhcC----------Cce-----eeehhhhhcCceeehHH
Confidence 45679999999999999988 799999999999999999886541 111 12222222234799999
Q ss_pred echhhhhcChhhHHHHHHHHHHhccc-CcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIAR-SGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~Lkp-gG~liv~ 268 (272)
|-++|.--.++- ++|+.+..+|+| +|.+|+.
T Consensus 175 clNlLDRc~~p~--kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLDRCFDPF--KLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhhcChH--HHHHHHHHHhccCCCcEEEE
Confidence 999987665666 999999999999 8988764
No 193
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.29 E-value=3.1e-06 Score=76.32 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=65.7
Q ss_pred ccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 153 ~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.++.++..|||||.|||.+|..|| +.+..|.++|.++.|+....++.... ......+++.+|+...+.+ .||
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv~gt-----p~~~kLqV~~gD~lK~d~P--~fd 125 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRVQGT-----PKSGKLQVLHGDFLKTDLP--RFD 125 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHhcCC-----CccceeeEEecccccCCCc--ccc
Confidence 357889999999999999999997 88899999999999999999988542 2236789999999877644 699
Q ss_pred eeEech
Q 024100 233 VIWVQW 238 (272)
Q Consensus 233 lIvs~~ 238 (272)
.+|++.
T Consensus 126 ~cVsNl 131 (315)
T KOG0820|consen 126 GCVSNL 131 (315)
T ss_pred eeeccC
Confidence 999754
No 194
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.28 E-value=9.3e-07 Score=83.49 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=86.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+...++|+|||.|..+..+..-...++++++.++--+..+....... .....-.+...|+...+++++.||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~-----~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKA-----YLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHH-----HhhhhcceehhhhhcCCCCccccCcE
Confidence 3455689999999999999774334579999998887777666544221 12234455778888888888999999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
.+..+..|.++.. .++++++++++|||++++.|-
T Consensus 183 ~~ld~~~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 183 RFLEVVCHAPDLE--KVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEEeecccCCcHH--HHHHHHhcccCCCceEEeHHH
Confidence 9999999998887 999999999999999998763
No 195
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.28 E-value=2.3e-06 Score=81.48 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=74.2
Q ss_pred CeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
.+|||++||+|..+..++.... ..|+++|.++.+++.+++++..- ...++.++++|+..+....+.||+|++.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N------~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN------GLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 4899999999999998853332 38999999999999999987431 2345678999987653213579999986
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
- . ..+. .++....+.+++||.+.++
T Consensus 133 P-~---Gs~~--~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 P-F---GSPA--PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-C---CCcH--HHHHHHHHHhcCCCEEEEE
Confidence 3 2 2233 6888877888999999875
No 196
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.26 E-value=1.3e-06 Score=74.97 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=73.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD 232 (272)
++.++||+-||+|.++.+.|++....|+.||.++..+...++++...+ ....+.+++.|...+- ....+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~-----~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG-----LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC-----CCcceeeeccCHHHHHHhhcccCCCce
Confidence 567999999999999999987778899999999999999999986542 2235788888864321 1246899
Q ss_pred eeEechhhhhcChhhHHHHHHHHH--HhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAK--ENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~--r~LkpgG~liv~ 268 (272)
+|++.--... ... ..+++..+. .+|+++|.+++-
T Consensus 117 iIflDPPY~~-~~~-~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 117 IIFLDPPYAK-GLY-YEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp EEEE--STTS-CHH-HHHHHHHHHHTTSEEEEEEEEEE
T ss_pred EEEECCCccc-chH-HHHHHHHHHHCCCCCCCEEEEEE
Confidence 9998755422 111 246777776 789999988764
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.8e-06 Score=73.96 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=76.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhc----CCcEEEEeCCHHHHHHHHHhccccCC----CCCCCCCceEEEEeCCCCCCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDFTPE 227 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~----~~~v~~vD~S~~mld~A~~~l~~~~~----~~~~~~~~v~~~~~d~~~~~~~ 227 (272)
.++.++||+|.|+|++|.-+ +.. +..+.|||.-++.++.+++++...-. ...-....+.++.+|......+
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~-~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACF-ARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred ccCcceeecCCCccHHHHHH-HHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 46779999999999999855 443 44559999999999999998854211 0011235788999998877666
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..+||.|.+... .. +.-+++...|+|||.+++
T Consensus 160 ~a~YDaIhvGAa------a~--~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGAA------AS--ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEccC------cc--ccHHHHHHhhccCCeEEE
Confidence 689999998744 22 466777888999998765
No 198
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.25 E-value=7.8e-06 Score=76.28 Aligned_cols=107 Identities=15% Similarity=0.055 Sum_probs=82.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fDl 233 (272)
..++..|||==||||.+..+. .-.+..+.|.|++..|+.-|+.|+... ......++.. |+...++.++++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEa-gl~G~~viG~Did~~mv~gak~Nl~~y------~i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEA-GLMGARVIGSDIDERMVRGAKINLEYY------GIEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhh-hhcCceEeecchHHHHHhhhhhhhhhh------CcCceeEEEecccccCCCCCCccce
Confidence 456779999999999999977 677999999999999999999998643 1234445555 88888887778999
Q ss_pred eEechhhhhc-----C--hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHL-----T--DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl-----~--d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++---..-- . +.-..++|+.+.++|++||+++..
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 9963221111 1 333568999999999999988754
No 199
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.24 E-value=9.8e-06 Score=73.61 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=83.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCC-----------------------C------
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-----------------------M------ 206 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~-----------------------~------ 206 (272)
+...+||--|||.||++.++ +..+..+.+.|.|--|+=..+=.+..... +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Ei-a~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEI-AKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHH-hhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34569999999999999999 57788999999999997665543322000 0
Q ss_pred -----CCCCCCceEEEEeCCCCCCCCC---CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 207 -----APDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 207 -----~~~~~~~v~~~~~d~~~~~~~~---~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
......+..+..+|+.++-.++ ++||+|+..+-|.- -+.+...|..+.++|||||+.|-.=.|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCc
Confidence 0012357888899998875444 69999999866533 245779999999999999988755444
No 200
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.20 E-value=3.1e-06 Score=73.78 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCCCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|+|+.||.|.++..+ ++ ....|.++|.+|..++..++++.. +.....+..+++|..++.. .+.||-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~-ak~~~~~~V~A~d~Np~a~~~L~~Ni~l-----Nkv~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPI-AKHGKAKRVYAVDLNPDAVEYLKENIRL-----NKVENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHH-HHHT-SSEEEEEES-HHHHHHHHHHHHH-----TT-TTTEEEEES-GGG----TT-EEE
T ss_pred CcceEEEEccCCccHHHHHH-hhhcCccEEEEecCCHHHHHHHHHHHHH-----cCCCCeEEEEcCCHHHhcC-ccccCE
Confidence 45679999999999999988 46 567899999999999999998753 2234568999999988865 579999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
|+++..- ... .||..+..++++||.+
T Consensus 173 vim~lp~----~~~--~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIMNLPE----SSL--EFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE--TS----SGG--GGHHHHHHHEEEEEEE
T ss_pred EEECChH----HHH--HHHHHHHHHhcCCcEE
Confidence 9987651 122 5888899999999976
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.20 E-value=2.1e-05 Score=67.71 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=68.5
Q ss_pred eeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+++|+|+|.|.-+..| +=.++ +++++|.+..=+...+...... ...|+++++..+++ .....+||+|++.
T Consensus 51 ~~lDiGSGaGfPGipL-aI~~p~~~~~LvEs~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~-~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPL-AIARPDLQVTLVESVGKKVAFLKEVVREL------GLSNVEVINGRAEE-PEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHH-HHH-TTSEEEEEESSHHHHHHHHHHHHHH------T-SSEEEEES-HHH-TTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHH-HHhCCCCcEEEEeCCchHHHHHHHHHHHh------CCCCEEEEEeeecc-cccCCCccEEEee
Confidence 7999999999988876 44444 6899999988555444433222 34689999999988 2234699999998
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.+- .+..++.-+...|++||.++.
T Consensus 123 Av~------~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 123 AVA------PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp SSS------SHHHHHHHHGGGEEEEEEEEE
T ss_pred hhc------CHHHHHHHHHHhcCCCCEEEE
Confidence 873 244788889999999998764
No 202
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.19 E-value=1.3e-06 Score=78.70 Aligned_cols=114 Identities=14% Similarity=0.238 Sum_probs=72.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCC---C----------CCC---------C-CC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH---M----------APD---------M-HK 212 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~---~----------~~~---------~-~~ 212 (272)
.++.++||||||+--.-.--+.+.+.++++.|.++.-++..++=+..... + ... . ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 34668999999985443322235688999999999888766554332200 0 000 0 11
Q ss_pred ceEEEEeCCCCCCC-CC-----CcceeeEechhhhhcCh--hhHHHHHHHHHHhcccCcEEEEec
Q 024100 213 ATNFFCVPLQDFTP-ET-----GRYDVIWVQWCIGHLTD--DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 213 ~v~~~~~d~~~~~~-~~-----~~fDlIvs~~vl~hl~d--~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.-.++.+|+...++ .+ .+||+|++.++++-... +++..+++++.++|||||.+|...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 23467788866432 11 25999999999998853 578899999999999999998653
No 203
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.9e-06 Score=71.12 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
-.+.+++|+|||.|-++....-.....|.|+|++++.++++.++...+ .-++++.++|+.+..+..+.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEE
Confidence 356799999999999996552122458899999999999999987654 3467999999999887778999999
Q ss_pred echhhh
Q 024100 236 VQWCIG 241 (272)
Q Consensus 236 s~~vl~ 241 (272)
.+--|.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 876553
No 204
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.12 E-value=2.7e-05 Score=76.00 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=77.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 231 (272)
..++.+|||++||+|.=|..+++.. ...++++|+++.-+...++++.+. ...++.+.+.|...+. ..++.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~------G~~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC------GVSNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCchhhhhhhchhhc
Confidence 3567899999999999999885443 247899999999999999998754 3467888888877653 223579
Q ss_pred eeeE----ech--hhhh-------cChhh-------HHHHHHHHHHhcccCcEEE
Q 024100 232 DVIW----VQW--CIGH-------LTDDD-------FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 232 DlIv----s~~--vl~h-------l~d~~-------~~~~l~~~~r~LkpgG~li 266 (272)
|.|+ |+. ++.. .+..+ ..++|....+.|+|||.+|
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV 239 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV 239 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999 442 2222 11111 1468888899999999885
No 205
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.11 E-value=8.6e-06 Score=74.66 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=81.4
Q ss_pred hhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCC
Q 024100 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (272)
Q Consensus 133 ~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~ 211 (272)
.|....+.++.... ++.+|||+=|=||.++...+ ..+ .+|+.||.|..+++.+++++..- .-..
T Consensus 109 lDqR~nR~~v~~~~----------~gkrvLnlFsYTGgfsv~Aa-~gGA~~v~~VD~S~~al~~a~~N~~lN----g~~~ 173 (286)
T PF10672_consen 109 LDQRENRKWVRKYA----------KGKRVLNLFSYTGGFSVAAA-AGGAKEVVSVDSSKRALEWAKENAALN----GLDL 173 (286)
T ss_dssp GGGHHHHHHHHHHC----------TTCEEEEET-TTTHHHHHHH-HTTESEEEEEES-HHHHHHHHHHHHHT----T-CC
T ss_pred HHHHhhHHHHHHHc----------CCCceEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCc
Confidence 34555666666542 35699999999999999774 544 47999999999999999997531 1123
Q ss_pred CceEEEEeCCCCCCC---CCCcceeeEec---hhhhhc-ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 212 KATNFFCVPLQDFTP---ETGRYDVIWVQ---WCIGHL-TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 212 ~~v~~~~~d~~~~~~---~~~~fDlIvs~---~vl~hl-~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..++|++.|+.++-- ..++||+||+- +.=... -..++.+++..+.++|+|||.++..
T Consensus 174 ~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 174 DRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp TCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 578999999865321 23589999952 110000 0245678999999999999998754
No 206
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.10 E-value=1.6e-05 Score=75.75 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=79.7
Q ss_pred CCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcce
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD 232 (272)
+.+|||+=|=||.++... +..+. +|+.||.|...|+.|++++..- .-....+.|+++|+.++- -...+||
T Consensus 218 GkrvLNlFsYTGgfSv~A-a~gGA~~vt~VD~S~~al~~a~~N~~LN----g~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHA-ALGGASEVTSVDLSKRALEWARENAELN----GLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred CCeEEEecccCcHHHHHH-HhcCCCceEEEeccHHHHHHHHHHHHhc----CCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 669999999999999977 46666 9999999999999999998531 112346789999986652 1223899
Q ss_pred eeEechh-----hhh-c-ChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWC-----IGH-L-TDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~v-----l~h-l-~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++--- =.. + -..++..++..+.++|+|||.++.+-
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9995211 000 0 12456789999999999999998753
No 207
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.10 E-value=1.1e-05 Score=79.63 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=76.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
....+||||||.|.++..+ |..++ .+.|+|++...+..+..+... ....|+.+++.|+..+ .++++++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~-A~~~p~~~~iGiE~~~~~~~~~~~~~~~------~~l~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQ-AKMNPDALFIGVEVYLNGVANVLKLAGE------QNITNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHH-HHhCCCCCEEEEEeeHHHHHHHHHHHHH------cCCCeEEEEcCCHHHHHHhcCccccc
Confidence 3568999999999999988 57665 779999999988888776532 2356888888887432 23557899
Q ss_pred eeEechhhhhcChh--h----HHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDD--D----FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~--~----~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|++++.==+.-.. . -..|++.+.+.|+|||.+.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 99987642111000 0 126999999999999988654
No 208
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.09 E-value=8.3e-06 Score=70.04 Aligned_cols=101 Identities=17% Similarity=0.101 Sum_probs=83.0
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
+.+.|+|+|+|.++. ++++...+|.+||-+|.-.+.|.+++.- ....+++++.+|+.+.+++ ..|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v------~g~~n~evv~gDA~~y~fe--~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHV------PGDVNWEVVVGDARDYDFE--NADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCC------CCCcceEEEeccccccccc--ccceeHHHH
Confidence 589999999999999 6578888999999999999999999632 2457899999999999874 699999876
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.=--+-++..+.+++.+.+.|+-++.+|=.
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 433344566778999999999999888644
No 209
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.09 E-value=2.9e-06 Score=71.60 Aligned_cols=72 Identities=19% Similarity=0.360 Sum_probs=53.1
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CC-cceeeEe
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TG-RYDVIWV 236 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~-~fDlIvs 236 (272)
.|+|+.||.|..+..+ ++.+.+|++||.++..++.|+.+.... +...++.|+++|+.+.... .. .||+|++
T Consensus 2 ~vlD~fcG~GGNtIqF-A~~~~~Viaidid~~~~~~a~hNa~vY-----Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQF-ARTFDRVIAIDIDPERLECAKHNAEVY-----GVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHH-HHTT-EEEEEES-HHHHHHHHHHHHHT-----T-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHH-HHhCCeEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999 699999999999999999999998654 2356899999999765321 11 2899995
Q ss_pred c
Q 024100 237 Q 237 (272)
Q Consensus 237 ~ 237 (272)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 3
No 210
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.09 E-value=9.5e-06 Score=71.08 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=64.7
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---CCCcceee
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDVI 234 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fDlI 234 (272)
..++|||||=.......- ...+ +|+.||.++. .-.+.+.|+.+.|. +.++||+|
T Consensus 52 ~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST-SGWF-DVTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred cceEEeecccCCCCcccc-cCce-eeEEeecCCC---------------------CCCceeeccccCCCCCCcccceeEE
Confidence 469999998755444322 2334 4999986551 22456777776654 24699999
Q ss_pred EechhhhhcChhh-HHHHHHHHHHhcccCcE-----EEEe
Q 024100 235 WVQWCIGHLTDDD-FVSFFKRAKENIARSGT-----FLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~-----liv~ 268 (272)
+++.||.+++++. .-++++++.+.|+|+|. +|++
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 9999999999864 55899999999999999 7654
No 211
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.09 E-value=4e-06 Score=77.18 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CCC--
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETG-- 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~-- 229 (272)
.+++.++|++||.|..|..++.... ..|+++|.++.|++.|++++.. ..++.++++++.++.. +.+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCCC
Confidence 4567999999999999998864432 5899999999999999988731 3579999999987631 112
Q ss_pred cceeeEec--hhhhhcChhh
Q 024100 230 RYDVIWVQ--WCIGHLTDDD 247 (272)
Q Consensus 230 ~fDlIvs~--~vl~hl~d~~ 247 (272)
++|.|++. .+.+++.+++
T Consensus 90 ~vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 90 KVDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred ccCEEEECCCccccccCCCc
Confidence 79999964 3344555554
No 212
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.03 E-value=3.9e-05 Score=69.31 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---Ccc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~f 231 (272)
..+...|||+|+|+|.+|..|+ +.+.+++++|.++.+++..++++. ..++++++.+|+..++... +..
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~-~~~~~v~~vE~d~~~~~~L~~~~~--------~~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELL-KRGKRVIAVEIDPDLAKHLKERFA--------SNPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHH-HHSSEEEEEESSHHHHHHHHHHCT--------TCSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHh-cccCcceeecCcHhHHHHHHHHhh--------hcccceeeecchhccccHHhhcCCc
Confidence 3467899999999999999995 667999999999999999999874 3568999999999887543 356
Q ss_pred eeeEechhhhhcC
Q 024100 232 DVIWVQWCIGHLT 244 (272)
Q Consensus 232 DlIvs~~vl~hl~ 244 (272)
..|+++-.. +++
T Consensus 99 ~~vv~NlPy-~is 110 (262)
T PF00398_consen 99 LLVVGNLPY-NIS 110 (262)
T ss_dssp EEEEEEETG-TGH
T ss_pred eEEEEEecc-cch
Confidence 678877664 443
No 213
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.98 E-value=1.7e-05 Score=74.77 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=45.6
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~ 224 (272)
++||+-||+|.++..| ++.+.+|.|||.++.+++.|++++.. ....|++|++++.+++
T Consensus 199 ~vlDlycG~G~fsl~l-a~~~~~V~gvE~~~~av~~A~~Na~~------N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPL-AKKAKKVIGVEIVEEAVEDARENAKL------NGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHH-HCCSSEEEEEES-HHHHHHHHHHHHH------TT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHH-HhhCCeEEEeeCCHHHHHHHHHHHHH------cCCCcceEEEeeccch
Confidence 8999999999999977 79999999999999999999998753 2346899999877654
No 214
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=6.2e-06 Score=74.77 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=73.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCce-EEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT-NFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fDlI 234 (272)
.....++|+|||.|..+. . .-...+.+.|.+...+..|++. +. ....+|+...++.+.+||.+
T Consensus 44 ~~gsv~~d~gCGngky~~-~--~p~~~~ig~D~c~~l~~~ak~~-------------~~~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG-V--NPLCLIIGCDLCTGLLGGAKRS-------------GGDNVCRADALKLPFREESFDAA 107 (293)
T ss_pred CCcceeeecccCCcccCc-C--CCcceeeecchhhhhccccccC-------------CCceeehhhhhcCCCCCCccccc
Confidence 346789999999998665 2 2122567777777777776542 22 56678888888888899999
Q ss_pred EechhhhhcChhh-HHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDD-FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv 267 (272)
++..++||+.... ...+++++.+.|+|||...+
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 9999999997654 45899999999999997543
No 215
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.93 E-value=1e-05 Score=71.59 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=77.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~f 231 (272)
..+..+|||...|-|+.+...+ +.+. .|.-||-++..++.|.-+-=. ..-....+.++.+|..++ ++++.+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~-~rGA~~VitvEkdp~VLeLa~lNPwS----r~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEAL-ERGAIHVITVEKDPNVLELAKLNPWS----RELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred cccCCEeeeeccCccHHHHHHH-HcCCcEEEEEeeCCCeEEeeccCCCC----ccccccccEEecccHHHHHhcCCcccc
Confidence 4567899999999999999886 6666 999999999999988755311 111234689999998665 4567799
Q ss_pred eeeEechh-hhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWC-IGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~v-l~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|+-.-- |-+.+.-=-++|.++++|+|+|||.+|.
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 99993210 1111111123799999999999999874
No 216
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.92 E-value=4.9e-05 Score=65.35 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=78.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCC-Ccce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET-GRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~~fD 232 (272)
-.+.++||+=+|+|.++.+.+++....++.||.+...+...++++...+ ...+..++..|...+ .... +.||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~-----~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG-----LEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CccceEEEeecHHHHHHhcCCCCccc
Confidence 3567999999999999999988888899999999999999999986542 235778888887754 1122 2599
Q ss_pred eeEechhhhh-cChhhHHHHHHH--HHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGH-LTDDDFVSFFKR--AKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~h-l~d~~~~~~l~~--~~r~LkpgG~liv~E 269 (272)
+|++---++. +-+.+ ..+.. -..+|+|+|.+++-.
T Consensus 117 lVflDPPy~~~l~~~~--~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 117 LVFLDPPYAKGLLDKE--LALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred EEEeCCCCccchhhHH--HHHHHHHhcCCcCCCcEEEEEe
Confidence 9998766531 11222 33333 346799999988643
No 217
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.89 E-value=6.2e-05 Score=68.14 Aligned_cols=126 Identities=22% Similarity=0.247 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhccCCCccCCCCCeeeEeeccc--chHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCC
Q 024100 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (272)
Q Consensus 135 ~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGt--G~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~ 210 (272)
....+.||.+...-.....|+ .-.||||||. -..+.+++.+. -.+|..||..+-.+..++..+... .
T Consensus 49 ar~nR~Fl~RaVr~la~~~GI---rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------~ 119 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGI---RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------P 119 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------T
T ss_pred HHHHHHHHHHHHHHHHHhcCc---ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC------C
Confidence 456677887776643332122 3599999993 34455564333 448899999999999999988531 1
Q ss_pred CCceEEEEeCCCCCCC--C----CCcce-----eeEechhhhhcCh-hhHHHHHHHHHHhcccCcEEEEec
Q 024100 211 HKATNFFCVPLQDFTP--E----TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 211 ~~~v~~~~~d~~~~~~--~----~~~fD-----lIvs~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.....++++|+.+..- . .+-+| .+++..+|||++| ++...+++.+++.|.||.+++++.
T Consensus 120 ~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 120 RGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp TSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 1237899999965320 0 02344 4778899999988 677899999999999999998763
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=0.00014 Score=64.29 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=80.0
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHH--HhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LL--a~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
.|+..++. ...+.++||+|.=||..+..++ -+...+|+.+|.++...+.+.+..+.+ +....++++
T Consensus 63 ~fl~~li~-------~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-----gv~~KI~~i 130 (237)
T KOG1663|consen 63 QFLQMLIR-------LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-----GVDHKITFI 130 (237)
T ss_pred HHHHHHHH-------HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-----cccceeeee
Confidence 45666665 2346699999988887776552 223669999999999999998876543 356789999
Q ss_pred EeCCCCC-C-----CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 218 CVPLQDF-T-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 218 ~~d~~~~-~-----~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++..+. + .+.++||++|.-.- .+.....+.++.++|++||.|++-
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEEe
Confidence 9987542 1 13469999986422 122347888899999999988753
No 219
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=0.00021 Score=62.91 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCeeeEeecccchHHHHHH-HhcCCcEEEEeCCHH---HHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCc-ce
Q 024100 158 HLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR-YD 232 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LL-a~~~~~v~~vD~S~~---mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD 232 (272)
+.+++|||+|.|.=+..|+ ..-..+|+++|.... +++.+...+ ...|++++++.++++.... . ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---------~L~nv~i~~~RaE~~~~~~-~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---------GLENVEIVHGRAEEFGQEK-KQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---------CCCCeEEehhhHhhccccc-ccCc
Confidence 5799999999999888763 122336899998766 555555555 4578999999999997543 4 99
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+|.|..+- .+..++.-|...+++||.++
T Consensus 138 ~vtsRAva------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 138 VVTSRAVA------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred EEEeehcc------chHHHHHHHHHhcccCCcch
Confidence 99988763 34467777888889988753
No 220
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=5.3e-05 Score=73.26 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=63.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---Ccc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~f 231 (272)
..+..++||+=||.|.++..| ++.+.+|++||.++++++.|+++.+.- ...|++|..++.+++.... ..+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~l-A~~~~~V~gvEi~~~aV~~A~~NA~~n------~i~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPL-AKRVKKVHGVEISPEAVEAAQENAAAN------GIDNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhh-cccCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHHhhhccccCCC
Confidence 345678999999999999988 799999999999999999999998542 3456999999999886543 378
Q ss_pred eeeEe
Q 024100 232 DVIWV 236 (272)
Q Consensus 232 DlIvs 236 (272)
|+|+.
T Consensus 364 d~Vvv 368 (432)
T COG2265 364 DVVVV 368 (432)
T ss_pred CEEEE
Confidence 99985
No 221
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.80 E-value=0.00011 Score=60.22 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=65.0
Q ss_pred CCCCeeeEeecccchHHHHHHH-----hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa-----~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 230 (272)
.+...|+|+|||-|+++..|.. ....+|.+||.++.+++.+.++....+. ....+..+...++.+... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cCC
Confidence 4667999999999999997754 3456999999999999999887654321 122466777777665533 357
Q ss_pred ceeeEechhhhhcChhhHHHH
Q 024100 231 YDVIWVQWCIGHLTDDDFVSF 251 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~ 251 (272)
.++++.-++-.-+++.-+..|
T Consensus 100 ~~~~vgLHaCG~Ls~~~l~~~ 120 (141)
T PF13679_consen 100 PDILVGLHACGDLSDRALRLF 120 (141)
T ss_pred CeEEEEeecccchHHHHHHHH
Confidence 888887777666655543333
No 222
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.77 E-value=6e-05 Score=71.67 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=76.9
Q ss_pred CeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-CCcceeeE
Q 024100 159 LVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fDlIv 235 (272)
.+|||+.||+|..+..++.+ ....|+++|.++..++.+++++..- ...++.+++.|+..+... ..+||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N------~~~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN------SVENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEchhHHHHHHHhCCCCCEEE
Confidence 48999999999999999655 2468999999999999999998431 223678999998766321 24799998
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..- ++ .+. .++..+.+.+++||.+.++
T Consensus 120 lDP-fG---s~~--~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 120 IDP-FG---TPA--PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred eCC-CC---CcH--HHHHHHHHhcccCCEEEEE
Confidence 865 32 244 7999999999999999876
No 223
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00014 Score=62.15 Aligned_cols=103 Identities=15% Similarity=0.053 Sum_probs=69.1
Q ss_pred CCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+..+||||||+|.++..|.....+ ...++|+++..++...+-.. .+..+++.++.|+.+--- +++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~-------~n~~~~~~V~tdl~~~l~-~~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR-------CNRVHIDVVRTDLLSGLR-NESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH-------hcCCccceeehhHHhhhc-cCCccEEE
Confidence 568999999999999967433444 35778999999988776542 134467888888865432 26888887
Q ss_pred echhhh---------------hc--Ch--hhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIG---------------HL--TD--DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~---------------hl--~d--~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+--.- +. .+ .-..+++..+-..|.|.|.++..
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 543210 00 00 11236777788899999987653
No 224
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.70 E-value=0.00024 Score=72.73 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=73.9
Q ss_pred CCCeeeEeecccchHHHHHHHh-------------------------------------------cCCcEEEEeCCHHHH
Q 024100 157 QHLVALDCGSGIGRITKNLLIR-------------------------------------------YFNEVDLLEPVSHFL 193 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~-------------------------------------------~~~~v~~vD~S~~ml 193 (272)
+...++|-+||+|.+..+.+.. ....++|+|.++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4578999999999999876421 012589999999999
Q ss_pred HHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC--CcceeeEechhhhh-cC-hhhHHHHHHHHHHhcc---cCcEEE
Q 024100 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDVIWVQWCIGH-LT-DDDFVSFFKRAKENIA---RSGTFL 266 (272)
Q Consensus 194 d~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fDlIvs~~vl~h-l~-d~~~~~~l~~~~r~Lk---pgG~li 266 (272)
+.|++++... +....+.|.++|+.+++.+. ++||+|+++--... +. ..++..+.+++-+.++ +|+.++
T Consensus 270 ~~A~~N~~~~-----g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 270 QAARKNARRA-----GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHc-----CCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999998653 22346899999998875432 47999999855322 22 2445556555555554 787654
No 225
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.68 E-value=0.00019 Score=67.20 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=63.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.++||+||++|.+|..|+ +.+..|++||..+ |-.. +. ..++|..+..|...+.+..+.+|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~-~rG~~V~AVD~g~-l~~~----L~--------~~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLV-RRGMFVTAVDNGP-MAQS----LM--------DTGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHH-HcCCEEEEEechh-cCHh----hh--------CCCCEEEEeccCcccCCCCCCCCEE
Confidence 3577899999999999999885 7777999999554 3222 21 3567888888887776545789999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARS 262 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lkpg 262 (272)
+|-.+- .|. .+.+-+.++|..|
T Consensus 275 VcDmve----~P~--rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE----KPA--RVAELMAQWLVNG 296 (357)
T ss_pred EEeccc----CHH--HHHHHHHHHHhcC
Confidence 987763 244 5666666666555
No 226
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.68 E-value=1.8e-05 Score=67.15 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=53.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC---------CCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL---------QDF 224 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~---------~~~ 224 (272)
.+.+|||+||++|.++..++ +.. ..|.++|+.+. .. ..++.++++|+ .+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~-~~~~~~~~v~avDl~~~------~~-----------~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL-QRGGPAGRVVAVDLGPM------DP-----------LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH-TSTTTEEEEEEEESSST------GS------------TTEEBTTGGGEEEEHSHHGGGS
T ss_pred cccEEEEcCCcccceeeeee-ecccccceEEEEecccc------cc-----------ccceeeeecccchhhHHHhhhhh
Confidence 45799999999999999875 655 79999997764 10 11222223332 121
Q ss_pred CC-CCCcceeeEechhhhhcC----h-----hhHHHHHHHHHHhcccCcEEEEe
Q 024100 225 TP-ETGRYDVIWVQWCIGHLT----D-----DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 225 ~~-~~~~fDlIvs~~vl~hl~----d-----~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.. ..++||+|+|-.+..--. | .-....+.-+.+.|+|||.+++.
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 11 125899999866221110 1 11234555556789999977653
No 227
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.66 E-value=0.00018 Score=71.18 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=50.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~---------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--- 224 (272)
...+|||.|||+|.+...++.... .++.++|+++..+..++.++.... ...+++.+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~------~~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA------LLEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC------CCCceeeeccccccccc
Confidence 456899999999999998864321 467999999999999998875431 11234444443221
Q ss_pred --CCCCCcceeeEec
Q 024100 225 --TPETGRYDVIWVQ 237 (272)
Q Consensus 225 --~~~~~~fDlIvs~ 237 (272)
....+.||+|+.+
T Consensus 105 ~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 105 NIESYLDLFDIVITN 119 (524)
T ss_pred ccccccCcccEEEeC
Confidence 1112479999986
No 228
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.66 E-value=0.00026 Score=65.09 Aligned_cols=107 Identities=15% Similarity=0.032 Sum_probs=66.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHh--------cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~--------~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~ 226 (272)
..+..+|+|-.||+|.+...+... ...++.|+|.++.++..|+-++... .....+..+.+.|...-+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~----~~~~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH----GIDNSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT----THHCBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh----ccccccccccccccccccc
Confidence 345668999999999998877531 3458899999999999988765221 0112334577888654332
Q ss_pred C--CCcceeeEechhhhhc--Ch-----------------hhHHHHHHHHHHhcccCcEE
Q 024100 227 E--TGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 227 ~--~~~fDlIvs~~vl~hl--~d-----------------~~~~~~l~~~~r~LkpgG~l 265 (272)
. ...||+|+++--+.-. .+ ..-..|+..+.+.|++||.+
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 2 3689999986433222 00 01125889999999999975
No 229
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=0.00022 Score=66.80 Aligned_cols=177 Identities=15% Similarity=0.112 Sum_probs=115.0
Q ss_pred HHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhccc-cc---chhhhhHHHHHHHhhhhcchhhhhcccc
Q 024100 50 LRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED-GE---QQEKKTQWYREGISYWEGVEASVDGVLG 125 (272)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~-~~---~~~~~~~~y~~~~~YW~~~~~~~~~~lg 125 (272)
-+..+++|+-++. +.-..|..++....|. |-..+ +.--+|+. +. +.++-..|.+-++-||+..-.+
T Consensus 108 ~~~~i~~ai~~~~-~~vk~V~~k~~~v~G~-~R~~~--le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl~~------ 177 (341)
T COG2520 108 YKREIAEAILRVH-GKVKAVLLKEGPVAGE-FRVPR--LEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLST------ 177 (341)
T ss_pred HHHHHHHHHHhhc-cCeeEEEEecCccCCe-Eeccc--eEEeecCCCceEEEecCCEEEEEchHHeEECCCchH------
Confidence 5688999999773 3246777777766662 22222 22223332 11 2233334445555666432111
Q ss_pred CCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccC
Q 024100 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPEN 204 (272)
Q Consensus 126 gy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~ 204 (272)
. +.-+..+ ..++.+|+|.=||.|.+|..+ +..+.. |.++|++|..++..++++..
T Consensus 178 -----------E-R~Rva~~---------v~~GE~V~DmFAGVGpfsi~~-Ak~g~~~V~A~diNP~A~~~L~eNi~L-- 233 (341)
T COG2520 178 -----------E-RARVAEL---------VKEGETVLDMFAGVGPFSIPI-AKKGRPKVYAIDINPDAVEYLKENIRL-- 233 (341)
T ss_pred -----------H-HHHHHhh---------hcCCCEEEEccCCcccchhhh-hhcCCceEEEEecCHHHHHHHHHHHHh--
Confidence 1 1112222 234679999999999999988 566554 99999999999999999843
Q ss_pred CCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 205 HMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 205 ~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.....+..+++|..++.+..+.+|-|++++.- +.. +++....+.+++||.+..-+
T Consensus 234 ---N~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~----~a~--~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 234 ---NKVEGRVEPILGDAREVAPELGVADRIIMGLPK----SAH--EFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ---cCccceeeEEeccHHHhhhccccCCEEEeCCCC----cch--hhHHHHHHHhhcCcEEEEEe
Confidence 223344889999999987654789999998763 223 68888888899999885443
No 230
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.0003 Score=68.17 Aligned_cols=101 Identities=15% Similarity=0.276 Sum_probs=83.2
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechh
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~v 239 (272)
++|-+|||.-.++..+....+..++-+|.|+..++.....-. ....-..+...|+....+++++||+|+.-..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-------~~~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-------KERPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-------cCCcceEEEEecchhccCCCcceeEEEecCc
Confidence 899999999999999877779999999999999988877642 1345788999999998889999999999888
Q ss_pred hhhcChh-h-------HHHHHHHHHHhcccCcEEEE
Q 024100 240 IGHLTDD-D-------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 240 l~hl~d~-~-------~~~~l~~~~r~LkpgG~liv 267 (272)
++++-.+ + .-..+.++.++|++||+++.
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 8887322 2 12457888999999998754
No 231
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.59 E-value=0.00037 Score=65.53 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=79.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHh--ccccCCCCCCCCCceEEEEeCCCCCC-CCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~--l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 231 (272)
...+||=+|.|.|--.++++ ++ +.+++.||.+|+|++.++.+ +...+ ..+-.+++++++..|..+|- ...+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N-~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALN-QGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhc-cCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44589999999999999996 43 66999999999999999833 22211 11234678999999987763 233589
Q ss_pred eeeEe------chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWV------QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs------~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|+. +.++.-+-. .+|..-.++.|+++|.++++.
T Consensus 367 D~vIVDl~DP~tps~~rlYS---~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYS---VEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEeCCCCCCcchhhhhh---HHHHHHHHHhcCcCceEEEec
Confidence 99984 334433322 268888999999999998864
No 232
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.59 E-value=0.00016 Score=58.42 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=42.9
Q ss_pred eeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC
Q 024100 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~ 222 (272)
++||+|||+|.++..+ ++.++ ++.++|+++.+.+.+++++..- ...++++++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~-~~~~~~~~v~~~E~~~~~~~~l~~~~~~n------~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYF-ARKGAEGRVIAFEPLPDAYEILEENVKLN------NLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHH-HHhCCCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEEeeee
Confidence 4899999999999977 46666 5999999999999999887421 1234666666554
No 233
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=4.4e-05 Score=63.66 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=44.5
Q ss_pred eEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 214 v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++.|-......+.+++.|+|++..+++|++-++-..++++|++.|||||++-+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEE
Confidence 344443344445677899999999999999999999999999999999998854
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.47 E-value=0.00046 Score=62.99 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=65.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.+.+|+=||||+=-+|.-++++. ...|+++|.++..++.|++.+... .+....+.|+++|..+...+-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~----~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD----LGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------HH-SSEEEEES-GGGG-GG----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc----ccccCCeEEEecchhccccccccCCE
Confidence 45699999999877777666654 346889999999999999876411 12246789999998766544358999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+..... -++..++.++|.++.+.++||..+++.
T Consensus 196 V~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 196 VFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEE-TT--S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9977655 334456779999999999999988764
No 235
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0011 Score=62.88 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=76.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-----------------------------------------cEEEEeCCHHHHH
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-----------------------------------------EVDLLEPVSHFLD 194 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-----------------------------------------~v~~vD~S~~mld 194 (272)
.+...++|-=||+|.+.++. +-... ...++|.++.|++
T Consensus 190 ~~~~pl~DPmCGSGTi~IEA-Al~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEA-ALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCccccCCCCccHHHHHH-HHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 34468999999999999987 34443 2679999999999
Q ss_pred HHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhh-hcChhh-----HHHHHHHHHHhcccCcEEEE
Q 024100 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTDDD-----FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 195 ~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~-hl~d~~-----~~~~l~~~~r~LkpgG~liv 267 (272)
.|+.|...+ +....|.|.++|+..+..+.+.+|+|||+---. -+.++. ...|.+.+++.++.-+..++
T Consensus 269 ~Ak~NA~~A-----Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 269 GAKANARAA-----GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHHHhc-----CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 999998754 356789999999999975536899999984311 222332 23455666677766665544
No 236
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.27 E-value=0.0025 Score=56.35 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=65.1
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCC---cEEEEeCCHH----HHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~---~v~~vD~S~~----mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-- 224 (272)
.+.++.+||-+|+.+|....++ +.... .|.+||.|+. .++.|+++ +|+--+-.|+...
T Consensus 70 ~ik~gskVLYLGAasGTTVSHv-SDIvg~~G~VYaVEfs~r~~rdL~~la~~R------------~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHV-SDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------------PNIIPILEDARHPEK 136 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHH-HHHHTTTSEEEEEESSHHHHHHHHHHHHHS------------TTEEEEES-TTSGGG
T ss_pred CCCCCCEEEEecccCCCccchh-hhccCCCCcEEEEEecchhHHHHHHHhccC------------CceeeeeccCCChHH
Confidence 4678889999999999988878 56533 8999999995 45555543 4666667777532
Q ss_pred -CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 225 -~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..--+..|+|++.-+ + .++.+-++.++..-||+||.+++
T Consensus 137 Y~~lv~~VDvI~~DVa--Q--p~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 137 YRMLVEMVDVIFQDVA--Q--PDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp GTTTS--EEEEEEE-S--S--TTHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcccccccEEEecCC--C--hHHHHHHHHHHHhhccCCcEEEE
Confidence 111247999887655 2 13444788888899999998875
No 237
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0051 Score=58.15 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=75.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC----cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~----~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~ 227 (272)
..++.+|||+.+++|.=|.+++ .... .|+++|.|+.=+...++++.+. ...++..++.|...++ +.
T Consensus 154 p~pge~VlD~cAAPGGKTthla-~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl------G~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLA-ELMENEGAIVVAVDVSPKRLKRLRENLKRL------GVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHH-HhcCCCCceEEEEcCCHHHHHHHHHHHHHc------CCCceEEEecccccccccccc
Confidence 4677899999999999998884 5543 4799999999999999998765 3456778887765442 22
Q ss_pred CCcceeeEe------chhhh-------hcChhh-------HHHHHHHHHHhcccCcEEEE
Q 024100 228 TGRYDVIWV------QWCIG-------HLTDDD-------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 228 ~~~fDlIvs------~~vl~-------hl~d~~-------~~~~l~~~~r~LkpgG~liv 267 (272)
.++||.|+. ..+++ ..+..+ ..++|....+.|||||.++-
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVY 286 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVY 286 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 235999992 23331 111111 23678888899999998863
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0027 Score=55.45 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=65.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----- 226 (272)
+.+..+|+|+||-+|.++..+ ++. .. .|.++|+.|- ...+++.++++|+.+-+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva-~~~~~~~~~ivavDi~p~-----------------~~~~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVA-AKKLGAGGKIVAVDILPM-----------------KPIPGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHH-HHHhCCCCcEEEEECccc-----------------ccCCCceEEeeeccCccHHHHHH
Confidence 456789999999999999966 454 33 3899986541 123468999999865431
Q ss_pred ---CCCcceeeEec--------hhhhhcChhhHH-HHHHHHHHhcccCcEEEEe
Q 024100 227 ---ETGRYDVIWVQ--------WCIGHLTDDDFV-SFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ---~~~~fDlIvs~--------~vl~hl~d~~~~-~~l~~~~r~LkpgG~liv~ 268 (272)
...++|+|+|- +..+|.....+. .++.-+.+.|+|||.++..
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 22357999963 233454333333 4556666899999998765
No 239
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0035 Score=55.20 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=76.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
.++++||.+|=|-|.+...+ .+. -..-..+|+.+..+...+..-- ....||-.+.+-+++. ..+++.||
T Consensus 100 tkggrvLnVGFGMgIidT~i-Qe~~p~~H~IiE~hp~V~krmr~~gw-------~ek~nViil~g~WeDvl~~L~d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFI-QEAPPDEHWIIEAHPDVLKRMRDWGW-------REKENVIILEGRWEDVLNTLPDKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHH-hhcCCcceEEEecCHHHHHHHHhccc-------ccccceEEEecchHhhhccccccCcc
Confidence 46779999999999988856 344 3356889999999988887642 2356888888888875 34567899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
-|+-----.| -+|+..+.+.+.++|||+|.+
T Consensus 172 GI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 172 GIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVF 202 (271)
T ss_pred eeEeechhhH--HHHHHHHHHHHhhhcCCCceE
Confidence 9986433233 267779999999999999986
No 240
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.00066 Score=63.51 Aligned_cols=111 Identities=12% Similarity=0.026 Sum_probs=67.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC---cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~---~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
-.+.+|||||.|+|.....+ ...++ .++++|.|+..-+........... ........=+..|-.+++.. ..|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~-n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~a-d~yt 187 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWAL-NDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAA-DLYT 187 (484)
T ss_pred cCcchhhccCCCCchhhhhh-cccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCcc-ceee
Confidence 35567999999999877644 45554 678889888655444322211100 00111111122333344433 4788
Q ss_pred eeEechhhhhcCh-hhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|+...-|-|... .++...+.++...+.|||.+++.|.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 8887766656543 3445588999999999999999884
No 241
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.07 E-value=0.0015 Score=56.61 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.-...+|||+|+|.|-.+..- ++. -..|...|..+-.++..+-+.+ .+...+.|...|.-. + +..||+
T Consensus 77 tVrgkrVLd~gagsgLvaIAa-a~aGA~~v~a~d~~P~~~~ai~lNa~-------angv~i~~~~~d~~g-~--~~~~Dl 145 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAA-ARAGAAEVVAADIDPWLEQAIRLNAA-------ANGVSILFTHADLIG-S--PPAFDL 145 (218)
T ss_pred ccccceeeecccccChHHHHH-HHhhhHHHHhcCCChHHHHHhhcchh-------hccceeEEeeccccC-C--CcceeE
Confidence 345679999999999999965 454 4578888988777666665542 244677888777755 3 357999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+.+.++..=+..+ +++. +.+.|+..|..+
T Consensus 146 ~LagDlfy~~~~a~--~l~~-~~~~l~~~g~~v 175 (218)
T COG3897 146 LLAGDLFYNHTEAD--RLIP-WKDRLAEAGAAV 175 (218)
T ss_pred EEeeceecCchHHH--HHHH-HHHHHHhCCCEE
Confidence 99998864423333 6666 777776666443
No 242
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0022 Score=57.07 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=67.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC--Cccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fDl 233 (272)
.++..+||+|+.||.+|.-+|.+....|.++|..-..+..--+. ....+.+-..++..+.+++ +..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCCCe
Confidence 46679999999999999988755577999999877655443221 2234445555665554322 36889
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+|--+|.. +..+|-.+...++|+|.++
T Consensus 148 ~v~DvSFIS-----L~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 148 IVIDVSFIS-----LKLILPALLLLLKDGGDLV 175 (245)
T ss_pred EEEEeehhh-----HHHHHHHHHHhcCCCceEE
Confidence 998777633 4578888999999998765
No 243
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.00099 Score=64.98 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=59.1
Q ss_pred HHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC
Q 024100 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (272)
Q Consensus 141 ~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d 220 (272)
.|..++.++. +++....+||+-||||.++..+ ++....|.|||+++..++-|+.+... ....|.+|+++-
T Consensus 370 vLys~i~e~~---~l~~~k~llDv~CGTG~iglal-a~~~~~ViGvEi~~~aV~dA~~nA~~------NgisNa~Fi~gq 439 (534)
T KOG2187|consen 370 VLYSTIGEWA---GLPADKTLLDVCCGTGTIGLAL-ARGVKRVIGVEISPDAVEDAEKNAQI------NGISNATFIVGQ 439 (534)
T ss_pred HHHHHHHHHh---CCCCCcEEEEEeecCCceehhh-hccccceeeeecChhhcchhhhcchh------cCccceeeeecc
Confidence 3445555544 3667789999999999999977 79999999999999999999988643 246799999995
Q ss_pred CCCC
Q 024100 221 LQDF 224 (272)
Q Consensus 221 ~~~~ 224 (272)
.++.
T Consensus 440 aE~~ 443 (534)
T KOG2187|consen 440 AEDL 443 (534)
T ss_pred hhhc
Confidence 5553
No 244
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.0034 Score=58.01 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=73.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccC---------C--------------C-------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN---------H--------------M------- 206 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~---------~--------------~------- 206 (272)
...+||=-|||.|+++..| +..+..+.|-|.|--|+=...=.+.... . +
T Consensus 150 ~ki~iLvPGaGlGRLa~dl-a~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDL-ACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHH-HHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 3568999999999999999 6888999999988887754432221100 0 0
Q ss_pred --C--CCCCCceEEEEeCCCCCCCCC---CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 207 --A--PDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 207 --~--~~~~~~v~~~~~d~~~~~~~~---~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
. +......++-.+|+.+.-... +.||+|+.+|-+.- -.....++..+...|+|||..+-.-.|
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEEEeccce
Confidence 0 001112223446765543222 47999998866533 234568999999999999998866554
No 245
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.94 E-value=0.00041 Score=53.43 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=41.9
Q ss_pred eEeecccchHHHHHHHhc--C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcceeeE
Q 024100 162 LDCGSGIGRITKNLLIRY--F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVIW 235 (272)
Q Consensus 162 LDiGcGtG~~t~~LLa~~--~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fDlIv 235 (272)
||+|+..|..+..+++.. . .++.++|+.+. .+.+++.+... ....+++++.++..+. ....++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------G-----GG-BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689999999998764221 2 26899998884 22222222211 1235799999998654 12235899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.-.. |- .+.....|..+...|+|||.++.-|
T Consensus 75 iDg~--H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD--HS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC--CC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7654 21 1334578888999999999887643
No 246
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.84 E-value=0.0034 Score=54.96 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=66.0
Q ss_pred eeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCCCCCCcceeeEech
Q 024100 161 ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIWVQW 238 (272)
Q Consensus 161 VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fDlIvs~~ 238 (272)
|.||||-.|.+...|+.+. .+.+.++|+++.-++.|++++... +....+++..+|- +.+++. +..|+|++..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-----~l~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-----GLEDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-----T-TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCcccEEEEECCcccccCCC-CCCCEEEEec
Confidence 6899999999999997443 448999999999999999998754 2346799999994 455433 2478888543
Q ss_pred h----hhhc---------------ChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 239 C----IGHL---------------TDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 239 v----l~hl---------------~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
. +..+ =.|. .-...+++.|...|+-+..|.+
T Consensus 75 MGG~lI~~ILe~~~~~~~~~~~lILqP~--~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 75 MGGELIIEILEAGPEKLSSAKRLILQPN--THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp E-HHHHHHHHHHTGGGGTT--EEEEEES--S-HHHHHHHHHHTTEEEEEEEE
T ss_pred CCHHHHHHHHHhhHHHhccCCeEEEeCC--CChHHHHHHHHHCCCEEEEeEE
Confidence 2 1010 0011 2345567778888887777754
No 247
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.80 E-value=0.0059 Score=53.32 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCc--EEEEeCCHHHHHHHHHhccccCCC-CCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~--v~~vD~S~~mld~A~~~l~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
++...+.|||||.|.+...| +..|++ +.|.|+--..-+..++++..++.. +.+..+|+.+...+...+.+ +-|.
T Consensus 59 ~~kvefaDIGCGyGGLlv~L-sp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp--n~f~ 135 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKL-APKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP--NFFE 135 (249)
T ss_pred cccceEEeeccCccchhhhc-cccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc--chhh
Confidence 34457999999999999988 798884 466677767777777776555433 22335667777666655532 2233
Q ss_pred eeEechhhhhcChhhHH-----------HHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFV-----------SFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~-----------~~l~~~~r~LkpgG~liv~ 268 (272)
--..+=-++-++|+.+. ..+.++.-+|++||.++..
T Consensus 136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 22222223334444321 4677788899999988643
No 248
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.78 E-value=0.001 Score=58.63 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=58.6
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC----CCCCCccee
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDV 233 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fDl 233 (272)
...|+|.-||.|..+..+ +..++.|.+||+++.-|..|+.+++.. +-..+|+|+|+|+.+. .+....+|+
T Consensus 95 ~~~iidaf~g~gGntiqf-a~~~~~VisIdiDPikIa~AkhNaeiY-----GI~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQF-ALQGPYVIAIDIDPVKIACARHNAEVY-----GVPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred cchhhhhhhcCCchHHHH-HHhCCeEEEEeccHHHHHHHhccceee-----cCCceeEEEechHHHHHHHHhhhhheeee
Confidence 347999999999999988 588999999999999999999998765 2345899999998543 223335777
Q ss_pred eEec
Q 024100 234 IWVQ 237 (272)
Q Consensus 234 Ivs~ 237 (272)
|+.+
T Consensus 169 vf~s 172 (263)
T KOG2730|consen 169 VFLS 172 (263)
T ss_pred eecC
Confidence 7743
No 249
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.76 E-value=0.003 Score=61.61 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.-.+|+|..+|.|.++..|. .. .|.++...+. .....++..- .+ .-+-.+..=.|.|+.-+.+||+|-+
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~-~~--~VWVMNVVP~---~~~ntL~vIy--dR---GLIG~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALI-DD--PVWVMNVVPV---SGPNTLPVIY--DR---GLIGVYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred ceeeeeeecccccHHHHHhc-cC--CceEEEeccc---CCCCcchhhh--hc---ccchhccchhhccCCCCcchhheeh
Confidence 44589999999999999774 43 3554433222 1111110000 00 1122221112445444579999999
Q ss_pred chhhhhcChh-hHHHHHHHHHHhcccCcEEEEecC
Q 024100 237 QWCIGHLTDD-DFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 237 ~~vl~hl~d~-~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+.+|.+..+. +++.+|-+|.|+|+|||.+|+.|+
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9998887664 567899999999999999999876
No 250
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.65 E-value=0.0086 Score=54.85 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=74.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
..++..|||+.+|+|.=|..++.... ..+.+.|.++.-+...++++.+. ...++.....|...+. .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~------g~~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL------GVFNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT------T-SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc------CCceEEEEeeccccccccccccc
Confidence 34677899999999999997854433 48999999999999998887654 4557777777765552 12235
Q ss_pred ceeeEe----ch--hhhhcCh-------hh-------HHHHHHHHHHhc----ccCcEEEE
Q 024100 231 YDVIWV----QW--CIGHLTD-------DD-------FVSFFKRAKENI----ARSGTFLL 267 (272)
Q Consensus 231 fDlIvs----~~--vl~hl~d-------~~-------~~~~l~~~~r~L----kpgG~liv 267 (272)
||.|+. +. ++..-++ .+ ..++|++..+.+ +|||+++-
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvY 217 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVY 217 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 999993 32 2222111 11 235788888999 99998863
No 251
>PRK10742 putative methyltransferase; Provisional
Probab=96.64 E-value=0.0043 Score=55.76 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=56.4
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCC-C--CCCceEEEEeCCCCCCC-CCCcceeeE
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP-D--MHKATNFFCVPLQDFTP-ETGRYDVIW 235 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~-~--~~~~v~~~~~d~~~~~~-~~~~fDlIv 235 (272)
+|||+=+|+|+.+..+ +..+..|+++|-++.+....++.+..+..... . ...+++++.+|..++-. ...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~l-as~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVL-ASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999977 57777899999999998888888765311000 0 11468888998866531 224799999
Q ss_pred e
Q 024100 236 V 236 (272)
Q Consensus 236 s 236 (272)
+
T Consensus 170 l 170 (250)
T PRK10742 170 L 170 (250)
T ss_pred E
Confidence 4
No 252
>PHA01634 hypothetical protein
Probab=96.46 E-value=0.011 Score=47.92 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=40.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~ 201 (272)
.+.+|+|||++.|..+..++.+....|.++|+++...+..++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 355999999999999999976777899999999999999999874
No 253
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.43 E-value=0.011 Score=51.27 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=65.1
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhc-CC--cEEEEeCCHH----------HHHHHHHhccccCCCCCCCCCceEEEEeC
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVP 220 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~-~~--~v~~vD~S~~----------mld~A~~~l~~~~~~~~~~~~~v~~~~~d 220 (272)
++.++.+|+|+=.|.|.+|. +++.. ++ .|+.+-+.+. +-..+++. ...|+..+..+
T Consensus 45 Glkpg~tVid~~PGgGy~Tr-I~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----------~~aN~e~~~~~ 113 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTR-IFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----------VYANVEVIGKP 113 (238)
T ss_pred ccCCCCEEEEEecCCccHhh-hhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----------hhhhhhhhCCc
Confidence 46788999999999999999 54665 33 4454433322 11122221 12355666666
Q ss_pred CCCCCCCCCcceeeEechhhhhcC-----hhhHHHHHHHHHHhcccCcEEEEec
Q 024100 221 LQDFTPETGRYDVIWVQWCIGHLT-----DDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 221 ~~~~~~~~~~fDlIvs~~vl~hl~-----d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+. .++..|+++.+..-|-++ ..-..++...+.+.|||||.+++.|
T Consensus 114 ~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 114 LVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred ccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 66655 335788888533322221 1223489999999999999998876
No 254
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.012 Score=56.96 Aligned_cols=113 Identities=16% Similarity=0.089 Sum_probs=72.1
Q ss_pred CCCCeeeEeecccchHHH--HHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcc
Q 024100 156 NQHLVALDCGSGIGRITK--NLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~--~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 231 (272)
..+..++|+|.|.|.-.- .++.+. ...++.||.|..|...+...+.....+......++.|+..-+ +. ..+.|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~---pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRL---PIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccC---CCCcccce
Confidence 456789999888764443 233333 557899999999999998887542111111112222322211 21 22469
Q ss_pred eeeEechhhhhcChhhHH--HHHHHHHHhcccCcEEEEecCC
Q 024100 232 DVIWVQWCIGHLTDDDFV--SFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~--~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|+|++++.++|++..... ..-+-++...++||++++.|+.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999999999999876432 2334456788999999998875
No 255
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.0049 Score=52.03 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=63.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCce---EEEEeCCCCCCCCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT---NFFCVPLQDFTPETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v---~~~~~d~~~~~~~~~~f 231 (272)
.+.+||++|.|-=.++.-+++... ..|-++|-++..+...++-...-. .+ ..... ++..-..+.. ...++|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~--~s-~~tsc~vlrw~~~~aqsq-~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM--AS-SLTSCCVLRWLIWGAQSQ-QEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc--cc-ccceehhhHHHHhhhHHH-HhhCcc
Confidence 446899999995555554555543 478889988888877665432100 00 01111 1111111111 123589
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|.|++..++.+ ++-...+.+-++..|+|.|.-++
T Consensus 105 DiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 105 DIILAADCLFF--DEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred cEEEeccchhH--HHHHHHHHHHHHHHhCcccceeE
Confidence 99999999844 44455788999999999997554
No 256
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.16 E-value=0.011 Score=54.29 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=78.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
...+.++|=||.|.|.+.+... ++ +.++..+|+....++..++.++... +.-.++.+.++-+|-..|- ...++
T Consensus 119 ~~npkkvlVVgggDggvlrevi-kH~~ve~i~~~eiD~~Vie~sk~y~p~la--~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVI-KHKSVENILLCEIDENVIESSKQYLPTLA--CGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCCCeEEEEecCCccceeeee-ccccccceeeehhhHHHHHHHHHHhHHHh--cccCCCceEEEeccHHHHHHHhccCC
Confidence 4567899999999999999763 54 5678889999999999888765432 1234678888888865441 23479
Q ss_pred ceeeEechh--hhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWVQWC--IGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs~~v--l~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|+.-.. ..-.-..=...++..+.++||+||+++...
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999994322 111000112468888999999999987654
No 257
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.13 E-value=0.023 Score=54.25 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=19.4
Q ss_pred CCCCCCCCCCcceeeEechhhhhcCh
Q 024100 220 PLQDFTPETGRYDVIWVQWCIGHLTD 245 (272)
Q Consensus 220 d~~~~~~~~~~fDlIvs~~vl~hl~d 245 (272)
.+..--++.++.++++|++++|+++.
T Consensus 152 SFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 152 SFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred cccccccCCCceEEEEeeccceeccc
Confidence 33333356689999999999999863
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.08 E-value=0.016 Score=53.66 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----CCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETG 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~ 229 (272)
.+++.++|+=+|.|..|..++... ...|+++|.++.+++.|++.+.. ...++.++++++.++.. ..+
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~-------~~~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD-------FEGRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh-------cCCcEEEEeCCHHHHHHHHHhcCCC
Confidence 466799999999999999887443 26899999999999999998743 23578899988876531 224
Q ss_pred cceeeEec--hhhhhcChhh
Q 024100 230 RYDVIWVQ--WCIGHLTDDD 247 (272)
Q Consensus 230 ~fDlIvs~--~vl~hl~d~~ 247 (272)
++|.|+.. .+.+++.+++
T Consensus 92 ~vDgIl~DLGvSS~Qld~~~ 111 (305)
T TIGR00006 92 KIDGILVDLGVSSPQLDDPE 111 (305)
T ss_pred cccEEEEeccCCHhhcCCCC
Confidence 68888853 3445555554
No 259
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.98 E-value=0.0057 Score=48.21 Aligned_cols=39 Identities=31% Similarity=0.553 Sum_probs=30.4
Q ss_pred cceeeEechhhh--hcC--hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIG--HLT--DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~--hl~--d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.||+|.|-.+.. |++ |+.+..+|+++++.|+|||.+|+-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 499999865422 553 677899999999999999999863
No 260
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.09 Score=47.95 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~ 229 (272)
..++.+|++-|.|.|.++..+ ++.. .++.-+|..+.-.+.|.+.+... +-..++++..-|+..- .....
T Consensus 103 i~PGsvV~EsGTGSGSlShai-araV~ptGhl~tfefH~~Ra~ka~eeFr~h-----gi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAI-ARAVAPTGHLYTFEFHETRAEKALEEFREH-----GIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred CCCCCEEEecCCCcchHHHHH-HHhhCcCcceEEEEecHHHHHHHHHHHHHh-----CCCcceEEEEeecccCCcccccc
Confidence 678899999999999999988 4653 47778899888888888888654 3467899999888653 33346
Q ss_pred cceeeEec
Q 024100 230 RYDVIWVQ 237 (272)
Q Consensus 230 ~fDlIvs~ 237 (272)
.+|.|+.-
T Consensus 177 ~aDaVFLD 184 (314)
T KOG2915|consen 177 KADAVFLD 184 (314)
T ss_pred ccceEEEc
Confidence 89998854
No 261
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.93 E-value=0.034 Score=50.07 Aligned_cols=107 Identities=15% Similarity=0.066 Sum_probs=62.0
Q ss_pred CCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CCCCc-c
Q 024100 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGR-Y 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~-f 231 (272)
...+||++|+|+|-.+... +. .+.+|...|....+.... .+....+...+.....+.....++.... .-... +
T Consensus 86 ~~~~vlELGsGtglvG~~a-a~~~~~~v~ltD~~~~~~~L~-~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILA-ALLLGAEVVLTDLPKVVENLK-FNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHH-HHHhcceeccCCchhhHHHHH-HhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4568999999999777744 44 577888887555433222 2110000000111224444444443321 11123 9
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|+++-++.+-...+ .+..-++..|..+|.++.
T Consensus 164 DlilasDvvy~~~~~e--~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 164 DLILASDVVYEEESFE--GLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cEEEEeeeeecCCcch--hHHHHHHHHHhcCCeEEE
Confidence 9999999986644444 788888888888885543
No 262
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.88 E-value=0.012 Score=55.10 Aligned_cols=89 Identities=8% Similarity=-0.042 Sum_probs=43.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-------C----------CcEEEEe-CCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-------F----------NEVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-------~----------~~v~~vD-~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
....+|+|+||..|..|..++... + -+|..-| |+-.+=...+..............--+.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 456699999999999998765331 1 1455556 554444433321100000000001112233
Q ss_pred EeCCCCCCCCCCcceeeEechhhhhcC
Q 024100 218 CVPLQDFTPETGRYDVIWVQWCIGHLT 244 (272)
Q Consensus 218 ~~d~~~~~~~~~~fDlIvs~~vl~hl~ 244 (272)
.+.+..--+++++.|+++|+++||+++
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred CchhhhccCCCCceEEEEEechhhhcc
Confidence 455655445678999999999999885
No 263
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.81 E-value=0.019 Score=55.34 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=62.3
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-CcceeeEec
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWVQ 237 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlIvs~ 237 (272)
..|||||.|||-++..........|+++|.-.+|.+.|+.-... ++...+|+++..--.+....+ -+.|+++..
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k-----ng~SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK-----NGMSDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc-----CCCccceeeeccccceeeecCcchhhhhhHh
Confidence 46899999999999955333466899999999999999987643 234567777776555544322 246776654
Q ss_pred hhhhhcChhhHHHHHHHHHHhc
Q 024100 238 WCIGHLTDDDFVSFFKRAKENI 259 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~L 259 (272)
-..-.+.-+....-+++..+.|
T Consensus 143 ~fdtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhhhccccchhHHHHHHHh
Confidence 4433333333334555555544
No 264
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.62 E-value=0.064 Score=49.55 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=44.8
Q ss_pred CCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-C----CCCCCCc
Q 024100 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-D----FTPETGR 230 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~----~~~~~~~ 230 (272)
...++||||+|...+---|.++ +.-+++++|+++..++.|++++..= .....+|++....-. . +....+.
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N----~~L~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN----PNLESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc----cccccceEEEEcCCccccchhhhcccce
Confidence 3568999999987654424333 3558899999999999999998531 123457777755322 1 1122358
Q ss_pred ceeeEechhhhh
Q 024100 231 YDVIWVQWCIGH 242 (272)
Q Consensus 231 fDlIvs~~vl~h 242 (272)
||+.+|+--|+-
T Consensus 178 ~dftmCNPPFy~ 189 (299)
T PF05971_consen 178 FDFTMCNPPFYS 189 (299)
T ss_dssp EEEEEE-----S
T ss_pred eeEEecCCcccc
Confidence 999999988844
No 265
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.11 E-value=0.11 Score=48.14 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcC----------------------CcEEEEe--CCHHHHHHHHHhcccc---------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF----------------------NEVDLLE--PVSHFLDAARESLAPE--------- 203 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~----------------------~~v~~vD--~S~~mld~A~~~l~~~--------- 203 (272)
+..+||.||.|.|.=...|. ..+ -++++|| +-...++.-...+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlA-a~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~ 164 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALA-AAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASA 164 (315)
T ss_pred cCceEEEECCChHHHHHHHH-HHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccc
Confidence 34699999999986555452 322 2788998 4455676666655432
Q ss_pred --CCCCCCCCCceEEEEeCCCCCCCCC-------CcceeeEechhhhhcCh---hhHHHHHHHHHHhcccCcEEEEecC
Q 024100 204 --NHMAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHLTD---DDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 204 --~~~~~~~~~~v~~~~~d~~~~~~~~-------~~fDlIvs~~vl~hl~d---~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
........-+++|.+.|+.....++ ...|+|...+.+..+-. .+-.+||.++-..++||-.++|+||
T Consensus 165 ~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 165 ANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 0011122347899999997765321 24789988888766522 2345899999999999999999997
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.10 E-value=0.032 Score=49.75 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=46.3
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCC---CCCCceEEEEeCCCCCC-CCCCcceee
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQDFT-PETGRYDVI 234 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~---~~~~~v~~~~~d~~~~~-~~~~~fDlI 234 (272)
.+|||+=+|-|+-+. +++..+.+|+++|-|+.+-...+.-+..+..... ....+++++.+|..++- .++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~-vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAF-VLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHH-HHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHH-HHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 389999999999999 4467888999999999876655544333211000 01258999999988753 334799999
Q ss_pred Eec
Q 024100 235 WVQ 237 (272)
Q Consensus 235 vs~ 237 (272)
+.-
T Consensus 156 Y~D 158 (234)
T PF04445_consen 156 YFD 158 (234)
T ss_dssp EE-
T ss_pred EEC
Confidence 953
No 267
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.09 E-value=0.077 Score=43.71 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=54.5
Q ss_pred cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CC-CcceeeEechhhhhcChhh---------HHH
Q 024100 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ET-GRYDVIWVQWCIGHLTDDD---------FVS 250 (272)
Q Consensus 182 ~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~-~~fDlIvs~~vl~hl~d~~---------~~~ 250 (272)
+|.++|+-++.|+.+++++.... ...+++++..+=+.+.. -+ +++|+++.|.- |||.-| -..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-----CCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 58899999999999999997542 23479999877655431 12 48999887654 564322 347
Q ss_pred HHHHHHHhcccCcEEEEe
Q 024100 251 FFKRAKENIARSGTFLLS 268 (272)
Q Consensus 251 ~l~~~~r~LkpgG~liv~ 268 (272)
+++.+.+.|+|||.+++.
T Consensus 74 Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 888899999999998764
No 268
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.06 E-value=0.095 Score=46.90 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=35.0
Q ss_pred CCeeeEeecccchHHHHHHHhc--C-------CcEEEEeCCHHHHHHHHHhccc
Q 024100 158 HLVALDCGSGIGRITKNLLIRY--F-------NEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~--~-------~~v~~vD~S~~mld~A~~~l~~ 202 (272)
+.+|+|+|+|.|.++..+|... . .++.+||+|+.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4699999999999999987432 1 2689999999999999998854
No 269
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.05 E-value=0.096 Score=49.48 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=65.4
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-C----CCCCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L----QDFTPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~----~~~~~~ 227 (272)
+.++.+||..|||. |..+..++...+. .+.+++.++++++.+++... ...+.+...+ + .++. .
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---------~~vi~~~~~~~~~~~l~~~~-~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---------AETINFEEVDDVVEALRELT-G 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------cEEEcCCcchHHHHHHHHHc-C
Confidence 45677999999997 8888888655554 59999999999999987531 1122222211 1 1121 1
Q ss_pred CCcceeeEechh-------h----hhc----ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWC-------I----GHL----TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~v-------l----~hl----~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+|+|+-.-. + .|. +++. ..+.++.+.|+++|.++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRP--DALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCch--HHHHHHHHHhccCCEEEEE
Confidence 236888875321 1 111 2333 6788899999999998865
No 270
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.28 Score=43.04 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=68.3
Q ss_pred cCCCccCCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-
Q 024100 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (272)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~- 225 (272)
.+...++.++.+||=+|+.+|....++ +... ..+.+||.|+.+....-.... .-+|+--+..|+....
T Consensus 68 Gl~~~pi~~g~~VLYLGAasGTTvSHV-SDIv~~G~iYaVEfs~R~~reLl~~a~--------~R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 68 GLKNFPIKEGSKVLYLGAASGTTVSHV-SDIVGEGRIYAVEFSPRPMRELLDVAE--------KRPNIIPILEDARKPEK 138 (231)
T ss_pred CcccCCcCCCCEEEEeeccCCCcHhHH-HhccCCCcEEEEEecchhHHHHHHHHH--------hCCCceeeecccCCcHH
Confidence 333335778899999999999998888 5653 468999988876544433331 1246666666764321
Q ss_pred --CCCCcceeeEechhhhhcChh-hHHHHHHHHHHhcccCcEEEE
Q 024100 226 --PETGRYDVIWVQWCIGHLTDD-DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 226 --~~~~~fDlIvs~~vl~hl~d~-~~~~~l~~~~r~LkpgG~liv 267 (272)
.--+..|+|+.--+ .+ +..-+..++..-|++||.+++
T Consensus 139 Y~~~Ve~VDviy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 139 YRHLVEKVDVIYQDVA-----QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred hhhhcccccEEEEecC-----CchHHHHHHHHHHHhcccCCeEEE
Confidence 11136888876433 33 333577788899999996654
No 271
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.98 E-value=0.24 Score=49.16 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=64.9
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-----------
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ----------- 222 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~----------- 222 (272)
..++.+|+=+||| .|..+...+...+..|.++|.+++-++.+++. .. ++...+..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA------------~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GA------------EFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEEeccccccccccchhh
Confidence 4568899999999 57777777656688999999999999998873 21 11111110
Q ss_pred CCCC----------CC--CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 223 DFTP----------ET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 223 ~~~~----------~~--~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+... .+ ..+|+|+..-..-.-..+. -+.+++.+.++|||.+++.
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~--lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPK--LITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcc--hHHHHHHHhcCCCCEEEEE
Confidence 0100 11 3599998765531111122 3358999999999999875
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.73 E-value=0.12 Score=46.55 Aligned_cols=81 Identities=14% Similarity=0.034 Sum_probs=55.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
...+.+|+|||||.=-++...+... ...+.++|++..+++.....+.. .....++...|+..-+++ ...|+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~-------l~~~~~~~v~Dl~~~~~~-~~~Dl 174 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV-------LGVPHDARVRDLLSDPPK-EPADL 174 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH-------TT-CEEEEEE-TTTSHTT-SEESE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh-------hCCCcceeEeeeeccCCC-CCcch
Confidence 3457899999999999888765222 34889999999999999887654 245677888888765443 58999
Q ss_pred eEechhhhhc
Q 024100 234 IWVQWCIGHL 243 (272)
Q Consensus 234 Ivs~~vl~hl 243 (272)
....=+++-+
T Consensus 175 aLllK~lp~l 184 (251)
T PF07091_consen 175 ALLLKTLPCL 184 (251)
T ss_dssp EEEET-HHHH
T ss_pred hhHHHHHHHH
Confidence 9987777554
No 273
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.36 E-value=0.094 Score=47.71 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=50.3
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CCcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fDlIvs~ 237 (272)
+++|+-||.|.++..+....+..+.++|.++..++..+.+... .++++|+.++... ...+|+|+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------------KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------------CCccCccccCchhhcCCCCCEEEeC
Confidence 6999999999999988433356678899999999999887631 1566777776542 2479999954
Q ss_pred h
Q 024100 238 W 238 (272)
Q Consensus 238 ~ 238 (272)
.
T Consensus 70 p 70 (275)
T cd00315 70 F 70 (275)
T ss_pred C
Confidence 3
No 274
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.29 E-value=0.64 Score=41.13 Aligned_cols=75 Identities=16% Similarity=0.043 Sum_probs=56.3
Q ss_pred CCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCCCCCcceeeE
Q 024100 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fDlIv 235 (272)
..++.||||-.|++..+|+... ...+++.|+++.-++.|.+++... ...+.++..++|-.. +.++ ..+|+|+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-----~l~~~i~vr~~dgl~~l~~~-d~~d~iv 90 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-----NLSERIDVRLGDGLAVLELE-DEIDVIV 90 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-----CCcceEEEeccCCccccCcc-CCcCEEE
Confidence 3469999999999999987443 457888999999999999998653 345677777877633 3322 3799998
Q ss_pred ech
Q 024100 236 VQW 238 (272)
Q Consensus 236 s~~ 238 (272)
...
T Consensus 91 IAG 93 (226)
T COG2384 91 IAG 93 (226)
T ss_pred EeC
Confidence 654
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.09 E-value=0.26 Score=46.39 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=64.3
Q ss_pred cCCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-CCCCCCCCCcc
Q 024100 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (272)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~f 231 (272)
+..+..+|+=+|+| .|..+.+++...+.+|+++|.|++-++.|++.-+ -.++... -.....-.+.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA------------d~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA------------DHVINSSDSDALEAVKEIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC------------cEEEEcCCchhhHHhHhhC
Confidence 35677788888766 6688888865578999999999999999987521 1233322 22222112349
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+..-. . ..+....+.|++||.++..
T Consensus 231 d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 231 DAIIDTVG-P--------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred cEEEECCC-h--------hhHHHHHHHHhcCCEEEEE
Confidence 99887655 2 3566678899999998754
No 276
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.84 E-value=0.14 Score=40.36 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeC
Q 024100 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (272)
Q Consensus 138 s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~ 188 (272)
...||..+...... ..+.....|+|||.|-+.. +|.+.+..-.|+|.
T Consensus 42 IAAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~-IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 42 IAAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVY-ILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHHHhcccC---CCCCCceEEccCCchHHHH-HHHhCCCCcccccc
Confidence 35677777665433 2456689999999999998 55677777788863
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.78 E-value=0.37 Score=44.59 Aligned_cols=96 Identities=21% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+||=.||| .|..+..++...+. .|.+++.+++-++.+++ +.. ...++....++.++....+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lGa--------~~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MGA--------DKLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cCC--------cEEecCCcccHHHHhccCCCCCE
Confidence 356788888876 56666666544455 68899999998988876 321 11122112222222211235898
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+-.-. .+ ..+..+.+.|++||.++..
T Consensus 239 vid~~G-----~~---~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 239 SFEVSG-----HP---SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEECCC-----CH---HHHHHHHHHhhcCCEEEEE
Confidence 875432 12 3566778889999998764
No 278
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.73 E-value=0.67 Score=42.01 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=61.1
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC------CCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~------~~~ 227 (272)
+.++.+||..|+| .|..+..++...+.+|++++.++...+.+++ +. . +.+..+-+.. ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~-~g---------~---~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE-LG---------A---DEVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hC---------C---CEEEcCCCcCHHHHHHHhc
Confidence 4566788888876 5888888866677789999999999888855 21 0 1111111110 112
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.+|+|+.+... . ..+.++.+.|+++|.++..
T Consensus 230 ~~~~D~vid~~g~------~--~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT------Q--PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 3479988754321 2 4777888999999998764
No 279
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.22 E-value=1.4 Score=39.77 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=69.4
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHH-HHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CC-------CCCC
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH-FLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-------PETG 229 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~-mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~ 229 (272)
.-|+.+|||-=.-...+ .....+..+|++.. +++.-++.+.... .....+..++.+|+.+ +. +.++
T Consensus 83 ~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~P~v~~~K~~~l~~~~---~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRL--PWPDGTRVFEVDQPAVLAFKEKVLAELG---AEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred cEEEEeCCccccHHHhc--CCCCCCeEEECCChHHHHHHHHHHHHcC---CCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 35999999976555545 22235778885544 5665555554321 1124577888888851 11 1122
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.--++++..++.|++.++..++|+.+.+...||+.++.
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45577788999999999999999999999889887653
No 280
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.09 E-value=0.17 Score=47.07 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----C-C
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~-~ 227 (272)
..+++.++|+=-|.|..|..+|... ...+.++|.++.+++.|++++.. ...++.++..++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-------~~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-------FDDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-------CCTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-------ccceEEEEeccHHHHHHHHHHccC
Confidence 3567799999999999999998553 36899999999999999998853 2467888888886542 1 2
Q ss_pred CCcceeeEe--chhhhhcChh
Q 024100 228 TGRYDVIWV--QWCIGHLTDD 246 (272)
Q Consensus 228 ~~~fDlIvs--~~vl~hl~d~ 246 (272)
..++|-|++ ..+.+|+.++
T Consensus 91 ~~~~dgiL~DLGvSS~Qld~~ 111 (310)
T PF01795_consen 91 INKVDGILFDLGVSSMQLDDP 111 (310)
T ss_dssp TS-EEEEEEE-S--HHHHHTG
T ss_pred CCccCEEEEccccCHHHhCCC
Confidence 246777774 2334444443
No 281
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.09 E-value=0.41 Score=47.47 Aligned_cols=99 Identities=10% Similarity=0.090 Sum_probs=64.1
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC------------
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL------------ 221 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~------------ 221 (272)
..++.+|+=+||| .|..+..++...+..|.++|.++.-++.++. +.. +++..+.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa------------~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA------------EFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC------------eEEecccccccccccccee
Confidence 3457899999999 5677776766678899999999998887776 321 1111111
Q ss_pred ---CCCC------CC--CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 222 ---QDFT------PE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 222 ---~~~~------~~--~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++. +. -..+|+|+.+-.+.--+.+. -+.+++.+.+|||+.++|.
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCCCCEEEEe
Confidence 0110 11 13699998766442222222 3677889999999999875
No 282
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.90 E-value=0.22 Score=43.22 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CC--cEEEEeC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEP 188 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~--~v~~vD~ 188 (272)
+++..+||||||.+|.++.-. .+. .+ -|.+||+
T Consensus 67 l~p~~~VlD~G~APGsWsQVa-vqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVA-VQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHH-HHhhCCCceEEEEee
Confidence 467889999999999999944 344 23 5677763
No 283
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.60 E-value=0.35 Score=41.32 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~ 198 (272)
..+++.++... ..++..|||.=||+|..+... .+.+.+..++|.++...+.|++
T Consensus 178 ~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa-~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAA-EELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHH-HHTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-----hccceeeehhhhccChHHHHH-HHcCCeEEEEeCCHHHHHHhcC
Confidence 34555555422 246789999999999999965 5888999999999999999864
No 284
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=0.26 Score=46.63 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=39.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---------CCcEEEEeCCHHHHHHHHHhccc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---------~~~v~~vD~S~~mld~A~~~l~~ 202 (272)
.+.+-.++++|+|+|.++..+|... ..++..||+|++....-++.++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 4556789999999999999987543 23778999999999998888854
No 285
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=0.87 Score=41.23 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=74.8
Q ss_pred CCCeeeEeecccchHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCC-
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET- 228 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~- 228 (272)
.....+|+|+|+-.=|+.|+... -....-||+|+..+....+.+... -..-.+.-+++|.+.. .++.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~-----y~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE-----YPGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh-----CCCCeEeehhhhHHHHHhcccCC
Confidence 46689999999998888776322 125688999999887655544211 1123455566776532 1122
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
++==.++...+|..++..+...||.++...|+||-++++-=+
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 334445577889999998888999999999999998876443
No 286
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.07 E-value=0.41 Score=41.92 Aligned_cols=102 Identities=7% Similarity=0.007 Sum_probs=50.5
Q ss_pred CCCeeeEeecccchHHHHHHHh---c---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----
Q 024100 157 QHLVALDCGSGIGRITKNLLIR---Y---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---- 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~---~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---- 226 (272)
+|..|+|+|.=.|..+..+ |. . ..+|.+||+...-.+. ..++. ....++|+|+++|..+...
T Consensus 32 kPd~IIE~Gi~~GGSli~~-A~ml~~~~~~~~VigiDIdir~~~~--~a~e~-----hp~~~rI~~i~Gds~d~~~~~~v 103 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFW-ASMLELLGGKGKVIGIDIDIRPHNR--KAIES-----HPMSPRITFIQGDSIDPEIVDQV 103 (206)
T ss_dssp --SEEEEE--TTSHHHHHH-HHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHTS
T ss_pred CCCeEEEEecCCCchHHHH-HHHHHHhCCCceEEEEeCCcchhch--HHHhh-----ccccCceEEEECCCCCHHHHHHH
Confidence 4669999999998877744 33 2 2699999975432222 11111 0124689999998865421
Q ss_pred ----CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 227 ----ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 227 ----~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
......+|+.- +- |.. +...+.|+.+...+++|+++|+-|
T Consensus 104 ~~~~~~~~~vlVilD-s~-H~~-~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 104 RELASPPHPVLVILD-SS-HTH-EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp GSS----SSEEEEES-S------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred HHhhccCCceEEEEC-CC-ccH-HHHHHHHHHhCccCCCCCEEEEEe
Confidence 01133454422 21 221 224467777899999999998765
No 287
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=0.48 Score=39.66 Aligned_cols=76 Identities=21% Similarity=0.100 Sum_probs=54.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.++.+|+|+|.|++-... ++.+ ...+++|.++-.+..++-..-+. +-.....|..-|+-.++..+ |..+
T Consensus 71 n~~GklvDlGSGDGRiVlaa-ar~g~~~a~GvELNpwLVaysrl~a~R~-----g~~k~trf~RkdlwK~dl~d--y~~v 142 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAA-ARCGLRPAVGVELNPWLVAYSRLHAWRA-----GCAKSTRFRRKDLWKVDLRD--YRNV 142 (199)
T ss_pred CCCCcEEeccCCCceeehhh-hhhCCCcCCceeccHHHHHHHHHHHHHH-----hcccchhhhhhhhhhccccc--cceE
Confidence 46679999999999999866 5665 68899999999988887543221 22456778888887776544 5555
Q ss_pred Eechh
Q 024100 235 WVQWC 239 (272)
Q Consensus 235 vs~~v 239 (272)
++..+
T Consensus 143 viFga 147 (199)
T KOG4058|consen 143 VIFGA 147 (199)
T ss_pred EEeeh
Confidence 54433
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=91.86 E-value=0.55 Score=42.81 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcc
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~ 201 (272)
.+++.++.-. -.+++.|||.=||+|..+... .+.+.+..|+|++++.++.|++++.
T Consensus 196 ~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA-~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVA-KASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 4455555421 257889999999999999955 5889999999999999999999984
No 289
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.73 E-value=0.36 Score=44.67 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=51.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~ 224 (272)
..+.+..+|+=-|.|..+..+|.+.. .+++++|.++.+++.|++.+.. ...+++++...+.++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-------~~~r~~~v~~~F~~l 85 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-------FDGRVTLVHGNFANL 85 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-------cCCcEEEEeCcHHHH
Confidence 45678999999999999999986653 4699999999999999998853 246788888877554
No 290
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.65 E-value=1.1 Score=41.52 Aligned_cols=94 Identities=24% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeC---CHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~---S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
.++.+||=+|+| .|.++..++...+.+|++++. ++.-++.+++ +. ...+.....++.+.. ..+.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~-~G---------a~~v~~~~~~~~~~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE-LG---------ATYVNSSKTPVAEVK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cC---------CEEecCCccchhhhh-hcCCC
Confidence 356789988887 577777775555668999885 6777777764 31 111211111211111 12468
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+-.-. .. ..+.+..+.|++||.++..
T Consensus 240 d~vid~~g------~~--~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 240 DLIIEATG------VP--PLAFEALPALAPNGVVILF 268 (355)
T ss_pred CEEEECcC------CH--HHHHHHHHHccCCcEEEEE
Confidence 98885432 11 3677788899999988753
No 291
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.36 E-value=0.59 Score=44.64 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=34.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~ 198 (272)
..-..|.|+|+|.|.++.-+.-+++-.|.+||-|....+.|+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3445899999999999996644567799999999888777753
No 292
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.33 E-value=2.6 Score=37.85 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=54.0
Q ss_pred CCCeeeEeecccchHHHHH-HHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC--Cccee
Q 024100 157 QHLVALDCGSGIGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~L-La~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fDl 233 (272)
.+.+||-+|=..- ++..+ +.....+|+++|+++.+++.-++..... .-.++.+..|+.+--|+. ++||+
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~-------gl~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEE-------GLPIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH-------T--EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc-------CCceEEEEecccccCCHHHhcCCCE
Confidence 4568999985443 22222 1344669999999999999887665432 234899999997643332 79999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCc
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSG 263 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG 263 (272)
+++.-.- |-+.+.-|+.+..+.|+..|
T Consensus 116 f~TDPPy---T~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 116 FFTDPPY---TPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE---S---SHHHHHHHHHHHHHTB-STT
T ss_pred EEeCCCC---CHHHHHHHHHHHHHHhCCCC
Confidence 9986331 12557789999999998766
No 293
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=91.06 E-value=0.38 Score=44.01 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHH-Hhccc---cCCCCCCCCCceEEEEeCCCCCCC-CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR-ESLAP---ENHMAPDMHKATNFFCVPLQDFTP-ETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~-~~l~~---~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 229 (272)
.....+|||+|||.|--...........+...|.|...++.-. .++.. +............+.+..+.++.+ ..+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 3467799999999998888653233368888888887773110 00000 000000112223333331212221 112
Q ss_pred --cceeeEechhhhhcChhhHHHH-HHHHHHhcccCcEEEE
Q 024100 230 --RYDVIWVQWCIGHLTDDDFVSF-FKRAKENIARSGTFLL 267 (272)
Q Consensus 230 --~fDlIvs~~vl~hl~d~~~~~~-l~~~~r~LkpgG~liv 267 (272)
.||+|.++-.+.-.+... .+ .......++++|.+++
T Consensus 194 ~~~ydlIlsSetiy~~~~~~--~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLA--VLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ccchhhhhhhhhhhCcchhh--hhHhhhhhhcCCccchhhh
Confidence 799999999885543333 22 4445566788887654
No 294
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.94 E-value=0.29 Score=46.82 Aligned_cols=58 Identities=5% Similarity=0.103 Sum_probs=51.0
Q ss_pred CCceEEEEeCCCCCC--CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 211 HKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 211 ~~~v~~~~~d~~~~~--~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+++++..++.++. .++++||.++.+..+.++++.++.+.++++.+.++|||.|+..
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 478999999998762 3457999999999999999999999999999999999998753
No 295
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.55 E-value=1.3 Score=40.46 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+||-.|||. |..+..++...+. .+.+++.++...+.+++ +.. ...+.....++.......+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGA--------DETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCC--------CEEEcCCchhhhhhhccCCCccEE
Confidence 567888888775 7777777555565 78999999988886654 211 011111111111222222359998
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..... . ..++...+.|+++|.++..
T Consensus 236 ld~~g~------~--~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA------P--AALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC------H--HHHHHHHHHHhcCCEEEEE
Confidence 865331 1 3567788999999998753
No 296
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.53 E-value=2.4 Score=40.31 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=64.8
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCC-----cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-- 226 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~-----~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-- 226 (272)
++.++.+|||..+-+|.=|..|+...+. .|.+-|.++.=+......+... ...++.+...++..++-
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l------~~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL------PSPNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc------CCcceeeecccceeccccc
Confidence 4678899999999999999988755442 5777787776555444433221 22344444444433321
Q ss_pred -------CCCcceeeEe----c--hhhhhcCh--------------hh-HHHHHHHHHHhcccCcEEEE
Q 024100 227 -------ETGRYDVIWV----Q--WCIGHLTD--------------DD-FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 227 -------~~~~fDlIvs----~--~vl~hl~d--------------~~-~~~~l~~~~r~LkpgG~liv 267 (272)
....||=|.+ + .++.+-++ +. ...++.+..+.|++||.+|=
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 1136888773 1 11111111 11 23678888899999998863
No 297
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.52 E-value=0.82 Score=42.42 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=45.6
Q ss_pred eeEeecccchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-CcceeeEe
Q 024100 161 ALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWV 236 (272)
Q Consensus 161 VLDiGcGtG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlIvs 236 (272)
|+|+-||.|.++.-| .+.+.+ +.++|.++..++.-+.++. . .++++|+.++.+.+ ..+|+++.
T Consensus 1 vidLF~G~GG~~~Gl-~~aG~~~~~a~e~~~~a~~ty~~N~~-----------~-~~~~~Di~~~~~~~~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGF-EQAGFKCVFASEIDKYAQKTYEANFG-----------N-KVPFGDITKISPSDIPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHH-HHcCCeEEEEEeCCHHHHHHHHHhCC-----------C-CCCccChhhhhhhhCCCcCEEEe
Confidence 689999999999988 455444 5679999999998888763 1 34456777665321 35899884
No 298
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.15 E-value=0.79 Score=42.76 Aligned_cols=100 Identities=9% Similarity=0.061 Sum_probs=72.6
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|.=+|.| .|..+..++...+.+|+.+|.|..-+......+ ..++...-.....+...-..+|+|+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f----------~~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF----------GGRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh----------CceeEEEEcCHHHHHHHhhhccEEE
Confidence 45578888888 577777787677999999999988777777665 2356666666555533335899988
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..-.+---..|. -..+++...++||+.++|.
T Consensus 237 gaVLIpgakaPk--Lvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 237 GAVLIPGAKAPK--LVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEEEecCCCCce--ehhHHHHHhcCCCcEEEEE
Confidence 665543333344 6888999999999999875
No 299
>PRK13699 putative methylase; Provisional
Probab=89.96 E-value=1.2 Score=39.54 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~ 202 (272)
.++..|||.=||+|...... .+.+.+..++|+++...+.|.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa-~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAA-LQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHH-HHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 46779999999999999965 57788999999999999999988753
No 300
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.99 E-value=4 Score=38.31 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CC-CC-CCCCC-Cc
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QD-FTPET-GR 230 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~-~~-~~~~~-~~ 230 (272)
+..+|+=+||| .|-++..++...+ ..|+++|.++.=++.|++.... ..+..... +. .. ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCCC
Confidence 44489999999 5777765643333 5888999999999999986531 11111111 10 00 01122 26
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++=.-. .. .++..+.+.++|||.+++.
T Consensus 239 ~D~vie~~G------~~--~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 239 ADVVIEAVG------SP--PALDQALEALRPGGTVVVV 268 (350)
T ss_pred CCEEEECCC------CH--HHHHHHHHHhcCCCEEEEE
Confidence 999984333 11 4888999999999988653
No 301
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.85 E-value=3 Score=36.03 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=58.9
Q ss_pred CCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-C-CCCCCcce
Q 024100 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD 232 (272)
.++.+||-.|+|. |..+..++...+.+|.+++.++...+.+++.- . ...++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~--------~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG-A--------DHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC-C--------ceeccCCcCCHHHHHHHhcCCCCC
Confidence 5677999999984 77777776566789999999988887775431 0 0011111101000 0 01224799
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+.+.. .. ..+..+.+.|+++|.++..
T Consensus 204 ~vi~~~~-----~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 204 VVIDAVG-----GP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEEECCC-----CH---HHHHHHHHhcccCCEEEEE
Confidence 9885432 11 3566667888999988764
No 302
>PRK11524 putative methyltransferase; Provisional
Probab=88.82 E-value=0.32 Score=44.34 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCC--CCCCCcceeeEechhhh----------hcChhh----HHHHHHHHHHhcccCcEEEEe
Q 024100 212 KATNFFCVPLQDF--TPETGRYDVIWVQWCIG----------HLTDDD----FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 212 ~~v~~~~~d~~~~--~~~~~~fDlIvs~~vl~----------hl~d~~----~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+..++++|..++ ..++++||+|++.=-.. .....+ +..+|.++.++|+|||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3557888888764 34457899999852210 000111 247899999999999998764
No 303
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.62 E-value=2.3 Score=35.84 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=55.1
Q ss_pred eecccchHHHHHHHhcCC---cEEEE--eCCHHHHHHHH---HhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcc
Q 024100 164 CGSGIGRITKNLLIRYFN---EVDLL--EPVSHFLDAAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRY 231 (272)
Q Consensus 164 iGcGtG~~t~~LLa~~~~---~v~~v--D~S~~mld~A~---~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f 231 (272)
||=|.=.++..|+ +.+. +++++ |...+.++... +++...+ .....-.+..|+..+.. ..+.|
T Consensus 3 vGeGdfSFs~sL~-~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-----~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 3 VGEGDFSFSLSLA-RAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-----ELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeccchHHHHHHH-HHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-----hcCCccccCCCCCcccccccccCCcC
Confidence 3444445566564 4433 55554 33333433332 3333221 11223345666665532 34689
Q ss_pred eeeEechhhhhcC-------------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLT-------------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~-------------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|+-++- |.. ..-+..||+.+.+.|+++|.|.++
T Consensus 77 DrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 77 DRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998876 444 112457999999999999998775
No 304
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.24 E-value=4 Score=31.25 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=53.7
Q ss_pred cccchHHHHHHH---hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcceeeEech
Q 024100 166 SGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDVIWVQW 238 (272)
Q Consensus 166 cGtG~~t~~LLa---~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fDlIvs~~ 238 (272)
||.|.++..++. +....|.++|.+++-++.+++. .+.++.+|..+... .-.++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 666777776643 2344899999999998888764 26788898866431 113678777654
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
- +++..-.+....+.+.|...++.
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEE
Confidence 3 34444455556677778777664
No 305
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.87 E-value=5.2 Score=36.21 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+||-.||| .|..+..++...+.+|.+++.++..++.+++ +.. ...+.....+... . ..+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~-~-~~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-LGA--------DEVVDSGAELDEQ-A-AAGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hCC--------cEEeccCCcchHH-h-ccCCCCE
Confidence 4566788889987 8888877765667789999999998888854 310 0011111001000 0 1236898
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.... .. ..+..+.+.|+++|.++..
T Consensus 229 vi~~~~-----~~---~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 229 ILVTVV-----SG---AAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEECCC-----cH---HHHHHHHHhcccCCEEEEE
Confidence 875422 11 3566778899999988764
No 306
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=87.85 E-value=3.2 Score=40.18 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=68.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 229 (272)
..++.+|||..|-+|.=|.++++-. -.-+.+.|.+..-+..-.+++.+. ...+.-..+.|..+|+ ++ +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl------Gv~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL------GVTNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh------CCCceEEEccCcccccccccC-c
Confidence 4677899999999998888774332 336678898888888888887654 2344455566666554 23 3
Q ss_pred cceeeE----ech--hhhh---------------cChhhHHHHHHHHHHhcccCcEEEE
Q 024100 230 RYDVIW----VQW--CIGH---------------LTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 230 ~fDlIv----s~~--vl~h---------------l~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+||=|. |+. ++.- ++.- ..++|-...+.+++||+++-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~L-Qr~LllsAi~lv~~GGvLVY 369 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHL-QRELLLSAIDLVKAGGVLVY 369 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHH-HHHHHHHHHhhccCCcEEEE
Confidence 799887 333 1100 0000 23567777789999999863
No 307
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.82 E-value=3.6 Score=32.01 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=55.5
Q ss_pred ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-----CC-CCCcceeeEechhh
Q 024100 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TP-ETGRYDVIWVQWCI 240 (272)
Q Consensus 167 GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~~fDlIvs~~vl 240 (272)
|.|..+..++...+.+|.+++.++.-++.+++.- .-.++..+-.++ .. ....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G------------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG------------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc------------ccccccccccccccccccccccccceEEEEecC-
Confidence 5788888887667889999999999999998641 112222221111 11 1237999885433
Q ss_pred hhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 241 GHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 241 ~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.. ..++.....|+|+|.+++.
T Consensus 68 -----~~--~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 -----SG--DTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp -----SH--HHHHHHHHHEEEEEEEEEE
T ss_pred -----cH--HHHHHHHHHhccCCEEEEE
Confidence 12 5888889999999998865
No 308
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.97 E-value=1.3 Score=42.17 Aligned_cols=100 Identities=9% Similarity=-0.017 Sum_probs=55.8
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|+=+|+| .|..+...+...+.+|.++|.++.-++.+...+. ..+.....+.+++...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g----------~~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG----------GRIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC----------ceeEeccCCHHHHHHHHccCCEEE
Confidence 45679999988 6777777766667789999998876666655442 111111111111110013689999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..-..---..+. -+-+++.+.++||+.+++.
T Consensus 236 ~a~~~~g~~~p~--lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 236 GAVLIPGAKAPK--LVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred EccccCCCCCCc--CcCHHHHhcCCCCCEEEEE
Confidence 653210000011 1224455667999998874
No 309
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.67 E-value=3 Score=38.84 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=49.5
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC--C-cceeeE
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~fDlIv 235 (272)
.+++|+=||.|.+..-+-...+.-+.++|+++..++.-+.+.. ...+...|+.++.... . .+|+|+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~-----------~~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP-----------HGDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC-----------CCceeechHhhcChhhccccCCCEEE
Confidence 4899999999999998843345667889999999998888763 2455666666554321 1 689998
Q ss_pred ech
Q 024100 236 VQW 238 (272)
Q Consensus 236 s~~ 238 (272)
...
T Consensus 73 gGp 75 (328)
T COG0270 73 GGP 75 (328)
T ss_pred eCC
Confidence 543
No 310
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=85.64 E-value=9.3 Score=34.57 Aligned_cols=94 Identities=23% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC----CCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~----~~~~ 228 (272)
+.++.+||-+|+| .|..+..++...+.+ +.+++.+++..+.+++ +.. . .++..+-.++ ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~---------~--~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK-LGA---------T--ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCC---------e--EEecCCCCCHHHHHHhcC
Confidence 4566789999876 466777675555656 8889999988888754 210 0 1111111111 0122
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+|+|+.+.. .. ..+..+.+.|+++|.++..
T Consensus 225 ~~vd~v~~~~~------~~--~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 225 YGFDVVIEATG------VP--KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCCcEEEECCC------Ch--HHHHHHHHHHhcCCEEEEE
Confidence 46999885422 12 4677778889999998764
No 311
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.45 E-value=1.1 Score=39.89 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~ 225 (272)
.-...-|.+||.|+|.+|+.++.....+..+||.+..++.-.+-.. ++ ......++..|+..+.
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~-EA------a~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLS-EA------APGKLRIHHGDVLRFK 111 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHh-hc------CCcceEEeccccceeh
Confidence 3455679999999999999998666678899998887776554322 21 2346677777775443
No 312
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.35 E-value=3.9 Score=37.46 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=47.0
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.+.+++...|+|+-+|.+|-.|. ++.-.|+.||.-+ |.. ... ....|+-...|-..|.|...+.|.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLV-kr~m~V~aVDng~-ma~---sL~---------dtg~v~h~r~DGfk~~P~r~~idW 273 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLV-KRNMRVYAVDNGP-MAQ---SLM---------DTGQVTHLREDGFKFRPTRSNIDW 273 (358)
T ss_pred hhcCCceeeecccCCCccchhhh-hcceEEEEeccch-hhh---hhh---------cccceeeeeccCcccccCCCCCce
Confidence 36678999999999999999885 8788999998543 321 111 233455555565555553445666
Q ss_pred eEech
Q 024100 234 IWVQW 238 (272)
Q Consensus 234 Ivs~~ 238 (272)
.+|..
T Consensus 274 mVCDm 278 (358)
T COG2933 274 MVCDM 278 (358)
T ss_pred EEeeh
Confidence 65543
No 313
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=84.15 E-value=2.5 Score=40.42 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=67.9
Q ss_pred CCCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCC-ceEEEEeCCCCCCC-CCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP-ETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~fD 232 (272)
.+.++||.=+|+|-=+...+.+ ....|++-|.|++.++..++++..- .... .+.+.+.|+..+.. ....||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-----~~~~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-----GLEDERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-----T-SGCCEEEEES-HHHHHCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-----cccCceEEEehhhHHHHhhhccccCC
Confidence 3458999999999666666544 2468899999999999999997431 1222 57888888876531 236899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|=.- .+. .+- .||....+.++.||++.++
T Consensus 124 ~IDlD-PfG---Sp~--pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 124 VIDLD-PFG---SPA--PFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp EEEE---SS-----H--HHHHHHHHHEEEEEEEEEE
T ss_pred EEEeC-CCC---Ccc--HhHHHHHHHhhcCCEEEEe
Confidence 97542 111 244 8999999999999999875
No 314
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.13 E-value=4.4 Score=36.46 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=56.5
Q ss_pred HHHHHhccCCCccCCCCCeeeEeecccchHHHHHHH--hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe
Q 024100 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI--RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (272)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa--~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~ 219 (272)
|..++...-+.. ..+..++||||.|.-.+-- |+- .++-+.+|.|+++..++.|+..+..- ......+++...
T Consensus 64 laDLL~s~~g~~-~~~~i~~LDIGvGAnCIYP-liG~~eYgwrfvGseid~~sl~sA~~ii~~N----~~l~~~I~lr~q 137 (292)
T COG3129 64 LADLLASTSGQI-PGKNIRILDIGVGANCIYP-LIGVHEYGWRFVGSEIDSQSLSSAKAIISAN----PGLERAIRLRRQ 137 (292)
T ss_pred HHHHHHhcCCCC-CcCceEEEeeccCcccccc-cccceeecceeecCccCHHHHHHHHHHHHcC----cchhhheeEEec
Confidence 455554332211 2366789999988754433 432 23558899999999999998876321 112234554432
Q ss_pred CC-----CCCCCCCCcceeeEechhhhh
Q 024100 220 PL-----QDFTPETGRYDVIWVQWCIGH 242 (272)
Q Consensus 220 d~-----~~~~~~~~~fDlIvs~~vl~h 242 (272)
.- +.+.-..+.||+..|+--||-
T Consensus 138 k~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 138 KDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred cCccccccccccccceeeeEecCCCcch
Confidence 22 122112468999999998844
No 315
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=83.93 E-value=10 Score=34.88 Aligned_cols=89 Identities=13% Similarity=-0.005 Sum_probs=55.5
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+||=.|+| .|..+..++...+.+|++++.++.-++.+++. . ....++. .+. ..+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~-G--------a~~vi~~-----~~~--~~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL-G--------AASAGGA-----YDT--PPEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh-C--------Cceeccc-----ccc--CcccceE
Confidence 4567789988865 55566666544566899999888888888663 1 1111111 111 1235787
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++..-.. . ..+....+.|++||.+++
T Consensus 227 ~i~~~~~-----~---~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 227 AILFAPA-----G---GLVPPALEALDRGGVLAV 252 (329)
T ss_pred EEECCCc-----H---HHHHHHHHhhCCCcEEEE
Confidence 6533221 1 367778889999999875
No 316
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=83.72 E-value=5.4 Score=39.85 Aligned_cols=103 Identities=12% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCeeeEeecccchHHHHHHHh---cCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 158 HLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~---~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
...|+=+|+|-|-+....+.. ... ++.+||=+|..+-..+.+-- ..-...|+++.+|+..+..+....|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~------~~W~~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF------ECWDNRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch------hhhcCeeEEEeccccccCCchhhcc
Confidence 457788899999776655421 233 45778877766554443211 1235689999999999985546899
Q ss_pred eeEechhhhhcChhhH-HHHHHHHHHhcccCcEEEE
Q 024100 233 VIWVQWCIGHLTDDDF-VSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~-~~~l~~~~r~LkpgG~liv 267 (272)
++|+- .|+-+.|.++ .+.|.-+.+.|+|+|..|=
T Consensus 442 I~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 442 IIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 87754 4556666554 4789999999999998763
No 317
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=83.29 E-value=0.94 Score=38.36 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=31.9
Q ss_pred CcceeeEechhhhhcC-----hh----hHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLT-----DD----DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~-----d~----~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||.+.|..+++|+. |+ .-.+.+.++++.|||||.++..
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred ccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 5899999999998872 21 2347889999999999998764
No 318
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.98 E-value=3.5 Score=39.61 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHh---ccccCCCCCCCCCceEEEEeCCCCCCC---
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARES---LAPENHMAPDMHKATNFFCVPLQDFTP--- 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~---l~~~~~~~~~~~~~v~~~~~d~~~~~~--- 226 (272)
+.+.....|+|.|.|.....+ +.. ...-.|++++..--+.|..+ +....+........+..+.+++.+-..
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~-aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFV-AAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred cCCCCcccCCCcccchhhHHH-HHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 567788999999999998855 333 22335555333322222211 111100001124456777777644321
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCCC
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSLI 272 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~~ 272 (272)
-....++|+++++. + |+++..=+.++...+++|-.+|-.++|.
T Consensus 269 I~~eatvi~vNN~~-F--dp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 269 IQTEATVIFVNNVA-F--DPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred HhhcceEEEEeccc-C--CHHHHHhhHHHHhhCCCcceEecccccc
Confidence 11368999999885 2 4665555668888999999999988874
No 319
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.96 E-value=5.6 Score=37.00 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=60.1
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCC-C-CCCCC
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~ 229 (272)
+.++.+||=.|+ |.|..+..++...+.+|.+++.++.-.+.+++.+.. ...++.... ++.+ + ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF--------DEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC--------CEEEECCCcccHHHHHHHHCCC
Confidence 456778988887 488888888666677899999888888877644421 112222111 1111 0 01123
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+-.-. . ..+..+.+.|++||.++..
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEE
Confidence 6898874322 1 3566778889999998753
No 320
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=82.69 E-value=8.7 Score=33.65 Aligned_cols=103 Identities=14% Similarity=0.021 Sum_probs=66.0
Q ss_pred CCCeeeEeecccchHHHHHHH---hcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC----
Q 024100 157 QHLVALDCGSGIGRITKNLLI---RYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---- 227 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa---~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 227 (272)
++..|+++|.-.|..+..++. +.+ .+|.++|++-.-++.+... .+.+.|+.++-.+....
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCCCHHHHHHHH
Confidence 567899999999988875532 224 4788888887666555432 35799999887554211
Q ss_pred --CCcceee-EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCCC
Q 024100 228 --TGRYDVI-WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSLI 272 (272)
Q Consensus 228 --~~~fDlI-vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~~ 272 (272)
.+.|--| +|-.+-||. +...+-|+-+..+|.-|-++++-|+++
T Consensus 138 ~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 138 RLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred HHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccc
Confidence 1123333 344454442 223355666678889999999888753
No 321
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=82.49 E-value=6.7 Score=35.71 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+..++|=+||| .|.++..++...+.+ |.++|.++..++.|.+.. .++. .+. ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------~i~~-----~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------VLDP-----EKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------ccCh-----hhc--cCCCCCEE
Confidence 35578888876 677777775445555 566788877666664321 1110 100 12368988
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+-.-. .. ..+..+.+.|+++|.++.
T Consensus 205 id~~G------~~--~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 205 YDASG------DP--SLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred EECCC------CH--HHHHHHHHhhhcCcEEEE
Confidence 85432 12 466777889999999875
No 322
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=82.29 E-value=0.82 Score=44.23 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~ 224 (272)
.++..|-|+-||.|-++..+ +.....|++.|.+++|++..+.+++.- .-...++.++.+|..+|
T Consensus 248 k~gevv~D~FaGvGPfa~Pa-~kK~crV~aNDLNpesik~Lk~ni~lN----kv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPA-AKKGCRVYANDLNPESIKWLKANIKLN----KVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccch-hhcCcEEEecCCCHHHHHHHHHhcccc----ccchhheeeecccHHHH
Confidence 46678999999999999988 577799999999999999999987531 11233477887776554
No 323
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=82.00 E-value=0.8 Score=42.44 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=62.2
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+..|.|+=+|.|++|..++-.. ...|.++|.+|..++..++++.. +....+..++.+|-. .+-+.+..|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~-----N~V~~r~~i~~gd~R-~~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA-----NNVMDRCRITEGDNR-NPKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh-----cchHHHHHhhhcccc-ccCccccchhee
Confidence 34689999999999999554444 56899999999999999988742 001112222233322 222334666665
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccC-c-EEEEecC
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARS-G-TFLLSHS 270 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~Lkpg-G-~liv~E~ 270 (272)
. +-++..+ +-+--..++|+|. | ++-+.|+
T Consensus 268 L----GLlPSse--~~W~~A~k~Lk~eggsilHIHen 298 (351)
T KOG1227|consen 268 L----GLLPSSE--QGWPTAIKALKPEGGSILHIHEN 298 (351)
T ss_pred e----ccccccc--cchHHHHHHhhhcCCcEEEEecc
Confidence 3 3344444 5555566778774 4 4445554
No 324
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=81.98 E-value=16 Score=32.33 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhccCCCccCCCCCeeeEeecccc--hHHHHHH--Hhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCC
Q 024100 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIG--RITKNLL--IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (272)
Q Consensus 137 ~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG--~~t~~LL--a~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~ 211 (272)
+...||..+... .....+++..|+.| ..|..|+ +++ +.++..|-+.+.-+...++.+... ...
T Consensus 28 ~~aEfISAlAAG-------~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~-----~~~ 95 (218)
T PF07279_consen 28 GVAEFISALAAG-------WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA-----GLS 95 (218)
T ss_pred CHHHHHHHHhcc-------ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc-----ccc
Confidence 345677766542 22347888866543 2344443 333 678888888888777777766432 123
Q ss_pred CceEEEEeCC-CCCCCCCCcceeeEechhhhhcChhhHH-HHHHHHHHhcccCcEEEEecCC
Q 024100 212 KATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 212 ~~v~~~~~d~-~~~~~~~~~fDlIvs~~vl~hl~d~~~~-~~l~~~~r~LkpgG~liv~E~~ 271 (272)
..++|+.++. +++.+.-...|.++...=. .++. ++|+-+. +.|.|-+++..+.
T Consensus 96 ~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na 150 (218)
T PF07279_consen 96 DVVEFVVGEAPEEVMPGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNA 150 (218)
T ss_pred ccceEEecCCHHHHHhhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecc
Confidence 4568888774 3332222468887754432 3444 5555433 5677888887654
No 325
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.97 E-value=7.5 Score=36.54 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=61.3
Q ss_pred cCCCCCeeeEeecc-cchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe--CCCCC----
Q 024100 154 RNNQHLVALDCGSG-IGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQDF---- 224 (272)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~--d~~~~---- 224 (272)
+...+.+||=+||| +|-++. +.++. ..+|.++|+++.-++.|++ +.. ..+..... +.+++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~-l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga---------~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTG-LVAKAMGASDVVITDLVANRLELAKK-FGA---------TVTDPSSHKSSPQELAELV 234 (354)
T ss_pred CcccCCeEEEECCcHHHHHHH-HHHHHcCCCcEEEeecCHHHHHHHHH-hCC---------eEEeeccccccHHHHHHHH
Confidence 46678899999999 566666 44565 4599999999999999998 532 11111111 01111
Q ss_pred --CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 225 --TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 225 --~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
......+|+.+...-+ + ..++.....+++||.++...
T Consensus 235 ~~~~g~~~~d~~~dCsG~-~-------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGA-E-------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HhhccccCCCeEEEccCc-h-------HHHHHHHHHhccCCEEEEec
Confidence 0112347887755443 1 45555677899999976653
No 326
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.48 E-value=4.4 Score=38.57 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=68.8
Q ss_pred CCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-CCcceeeE
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fDlIv 235 (272)
+.+|||-=+|||.=++.++..... .|++-|+||..++..++++.. ....+...+..|...+... ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~------N~~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL------NSGEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh------cCcccceeecchHHHHHHhcCCCccEEe
Confidence 568999999999777777544444 789999999999999999853 1133455555666554322 24677753
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.- . +..+- .|+....+.++.||++-++
T Consensus 127 iD-P---FGSPa--PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 127 ID-P---FGSPA--PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred cC-C---CCCCc--hHHHHHHHHhhcCCEEEEE
Confidence 31 1 11244 7888889999999998664
No 327
>PRK13699 putative methylase; Provisional
Probab=81.13 E-value=1.2 Score=39.51 Aligned_cols=20 Identities=0% Similarity=0.011 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcccCcEEEE
Q 024100 248 FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 248 ~~~~l~~~~r~LkpgG~liv 267 (272)
+..++.+++|+|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 35789999999999998875
No 328
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=80.95 E-value=4.5 Score=36.52 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=47.6
Q ss_pred eeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-C-cceeeEe
Q 024100 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-G-RYDVIWV 236 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~-~fDlIvs 236 (272)
+++|+=||.|.++..|- +. +.-+.++|.++...+.-+.++ + .....|+.++.... . .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~-~ag~~~~~a~e~~~~a~~~y~~N~-----------~--~~~~~Di~~~~~~~l~~~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLE-QAGFEVVWAVEIDPDACETYKANF-----------P--EVICGDITEIDPSDLPKDVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHH-HTTEEEEEEEESSHHHHHHHHHHH-----------T--EEEESHGGGCHHHHHHHT-SEEEE
T ss_pred cEEEEccCccHHHHHHH-hcCcEEEEEeecCHHHHHhhhhcc-----------c--ccccccccccccccccccceEEEe
Confidence 69999999999999884 54 567788999999999998886 1 77788888775221 1 5999984
No 329
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.52 E-value=15 Score=32.25 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=55.8
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++.++|=.|||. |..+..++...+.+ |.+++.+++..+.+++. ... ...+... +... ....+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~-g~~-------~~~~~~~----~~~~-~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL-GPA-------DPVAADT----ADEI-GGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc-CCC-------ccccccc----hhhh-cCCCCC
Confidence 45667888888764 66777665455667 99999888888877653 100 0001100 0111 224689
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+..-.- . ..+....+.|+++|.++..
T Consensus 162 ~vl~~~~~------~--~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASGS------P--SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccCC------h--HHHHHHHHHhcCCcEEEEE
Confidence 88753221 1 3566677889999988753
No 330
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=80.45 E-value=19 Score=33.10 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=57.1
Q ss_pred CeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHh--ccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~--l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+|+=+||| .|.+....|++.+..|++++-+++.++.-++. +... .......+ ........ ..+.||+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~-----~~g~~~~~-~~~~~~~~-~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV-----EQGQASLY-AIPAETAD-AAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe-----eCCcceee-ccCCCCcc-cccccCEEE
Confidence 368889988 56555545578888999999887666655542 2100 00111111 11111111 124799988
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
..-=-++ ...+++.+...+.++..++...
T Consensus 76 v~vK~~~-----~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 76 LACKAYD-----AEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred EECCHHh-----HHHHHHHHHhhCCCCCEEEEEe
Confidence 6532222 3378889999999998776543
No 331
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.32 E-value=6.2 Score=36.84 Aligned_cols=97 Identities=18% Similarity=0.025 Sum_probs=56.1
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-CC-CCCCCc
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DF-TPETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~~-~~~~~~ 230 (272)
+.+..+||=.|+| .|..+..++...+. .|.+++.++.-++.+++ +.. ...++....++. .+ ....+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~Ga--------~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-LGA--------TATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-cCC--------ceEeCCCchhHHHHHHHHhCCC
Confidence 4556778888876 46666666544555 69999999998888865 311 111111111110 01 011225
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+|+-.-. + . ..+....+.|+++|.++..
T Consensus 260 ~d~vid~~G--~---~---~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 260 VDYAFEMAG--S---V---PALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCEEEECCC--C---h---HHHHHHHHHHhcCCEEEEE
Confidence 898875322 1 1 3566677889999988753
No 332
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=80.29 E-value=7.9 Score=35.26 Aligned_cols=96 Identities=20% Similarity=0.130 Sum_probs=60.1
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~~ 229 (272)
+.++.+||-.|+|. |..+..++...+.+|+++..+++..+..++ +. ....+.....++ .... ...
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~-~g--------~~~v~~~~~~~~~~~l~~~~-~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE-LG--------ADDTINVGDEDVAARLRELT-DGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH-hC--------CCEEecCcccCHHHHHHHHh-CCC
Confidence 45677899998773 777777866668889999888888887754 21 011112111111 1111 223
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+.... .. ..+..+.+.|+++|.++..
T Consensus 227 ~vd~vld~~g------~~--~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 227 GADVVIDATG------NP--ASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCEEEECCC------CH--HHHHHHHHHHhcCCEEEEE
Confidence 5899886532 11 4567788899999988754
No 333
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.13 E-value=19 Score=33.26 Aligned_cols=96 Identities=17% Similarity=0.025 Sum_probs=56.4
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC----CCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ----DFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~----~~~~~~ 228 (272)
..++.+||=.||| .|..+..++...+. .|.+++.++.-++.+++ +.. ...++....++. +.. ..
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~Ga--------~~~i~~~~~~~~~~i~~~~-~~ 243 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-FGA--------THTVNSSGTDPVEAIRALT-GG 243 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC--------ceEEcCCCcCHHHHHHHHh-CC
Confidence 4567789988875 46666666444455 48999999988888864 321 111111111110 111 11
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+|+|+-.-. .+ ..+....+.+++||.+++.
T Consensus 244 ~g~d~vid~~g-----~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 244 FGADVVIDAVG-----RP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCCEEEECCC-----CH---HHHHHHHHHhccCCEEEEE
Confidence 35898874322 12 3566677889999998754
No 334
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.84 E-value=7.3 Score=37.44 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=50.2
Q ss_pred eeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC---CCcceee
Q 024100 160 VALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYDVI 234 (272)
Q Consensus 160 ~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fDlI 234 (272)
+||=|||| .|+.....+++.. .+|++.|-|..-.+.+.... ..+++..+.|+.+.+-- -..+|+|
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------GGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------cccceeEEecccChHHHHHHHhcCCEE
Confidence 68999997 6766666666776 79999999988777776543 23788888888776311 1357998
Q ss_pred Eechh
Q 024100 235 WVQWC 239 (272)
Q Consensus 235 vs~~v 239 (272)
++.-.
T Consensus 73 In~~p 77 (389)
T COG1748 73 INAAP 77 (389)
T ss_pred EEeCC
Confidence 86544
No 335
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.81 E-value=13 Score=34.30 Aligned_cols=90 Identities=20% Similarity=0.128 Sum_probs=54.1
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.+..+||=+||| .|.++..+++.. ..+|+++|.++.-++.+++ +.. . +.. .++. ....+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~--~~~---~~~~-~~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------T--YLI---DDIP-EDLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------e--eeh---hhhh-hccCCc
Confidence 456789999986 455555554432 3579999999887887764 210 0 100 1111 112488
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+-.-- . ......+....+.|++||.++.
T Consensus 225 ~viD~~G--~---~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 225 HAFECVG--G---RGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred EEEECCC--C---CccHHHHHHHHHhCcCCcEEEE
Confidence 8874221 1 0011577888899999999875
No 336
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.42 E-value=6.6 Score=34.36 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+.+||=+|+= ||.++..+|++ -.+|+++|+.|.|.-.. .+++.|... ..+.++.+|+|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~l--------------p~~v~Fr~~----~~~~~G~~Dli 103 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFL--------------PNNVKFRNL----LKFIRGEVDLI 103 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcC--------------CCCccHhhh----cCCCCCceeEE
Confidence 456789999975 89999889755 67999999999774332 235666654 34456899999
Q ss_pred EechhhhhcChh
Q 024100 235 WVQWCIGHLTDD 246 (272)
Q Consensus 235 vs~~vl~hl~d~ 246 (272)
+-.-.|.-++..
T Consensus 104 vDlTGlGG~~Pe 115 (254)
T COG4017 104 VDLTGLGGIEPE 115 (254)
T ss_pred EeccccCCCCHH
Confidence 987777665433
No 337
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.32 E-value=6.4 Score=36.19 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=53.2
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+.+|+=+|+| .|......|...+.+|++++.++.-.+.++. + ...+. ++.++...-..+|+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-~------------G~~~~--~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-M------------GLSPF--HLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-c------------CCeee--cHHHHHHHhCCCCEEE
Confidence 46799999987 4555555555667899999999765555543 1 11121 1112111113699999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..-.. + -+-+++.+.++||+.+++.
T Consensus 216 ~t~p~-~-------~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 216 NTIPA-L-------VLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred ECCCh-h-------hhhHHHHHcCCCCcEEEEE
Confidence 75321 1 1234456778899998875
No 338
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=78.08 E-value=12 Score=34.03 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=58.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CC--cEEEEeCCHH----HHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~--~v~~vD~S~~----mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-- 225 (272)
+.+..+||=+|++.|+.-.++ +.. ++ -|.+||.|+. .+..|+++ .||--+..|+....
T Consensus 154 ikpGsKVLYLGAasGttVSHv-SDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------tNiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHV-SDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------TNIIPIIEDARHPAKY 220 (317)
T ss_pred ecCCceEEEeeccCCceeehh-hcccCCCceEEEEEecccchHHHHHHhhcc------------CCceeeeccCCCchhe
Confidence 567889999999999988777 454 33 5788997764 34444432 34444455553210
Q ss_pred -CCCCcceeeEechhhhhcChhhHHH-HHHHHHHhcccCcEEEEe
Q 024100 226 -PETGRYDVIWVQWCIGHLTDDDFVS-FFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -~~~~~fDlIvs~~vl~hl~d~~~~~-~l~~~~r~LkpgG~liv~ 268 (272)
..-+-.|+|++.- +.++... +.-+..-.|++||-++++
T Consensus 221 RmlVgmVDvIFaDv-----aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 221 RMLVGMVDVIFADV-----AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeeEEEEeccC-----CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 0112466666543 3444333 444566789999987754
No 339
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=77.95 E-value=7.9 Score=37.50 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=55.0
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
-++.+|+=+||| .|.....++...+.+|+++|.++.-++.|+.. . . +.. +.++. - ...|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~-G---------~---~~~--~~~e~--v-~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME-G---------Y---EVM--TMEEA--V-KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc-C---------C---EEc--cHHHH--H-cCCCEE
Confidence 356799999999 47666666555677999999998877777542 1 1 111 11111 1 257998
Q ss_pred EechhhhhcChhhHHHHHHH-HHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKR-AKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~-~~r~LkpgG~liv 267 (272)
+..-. .+ .++.. ..+.+++||.++.
T Consensus 262 I~atG-----~~---~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 262 VTTTG-----NK---DIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred EECCC-----CH---HHHHHHHHhcCCCCcEEEE
Confidence 86422 12 34554 4788999998864
No 340
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=77.93 E-value=1.7 Score=42.62 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=68.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-------CCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-------FTP 226 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-------~~~ 226 (272)
....++|-+|-|.|.+..-+ ...+ ..+++|++.|.|++.|++.+...+. .+...+-.|-.+ ...
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl-~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~~~~~~~k~~~ 366 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFL-HMSLPKFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLDFLQRTAKSQQ 366 (482)
T ss_pred cccCcEEEEecCCCccccce-eeecCccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchHHHHHHhhccc
Confidence 34568999999999988855 3433 4889999999999999998854321 111222122111 111
Q ss_pred CCCcceeeEe----chhhhhcC--hhhHH--HHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWV----QWCIGHLT--DDDFV--SFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs----~~vl~hl~--d~~~~--~~l~~~~r~LkpgG~liv~ 268 (272)
++..||++.. .- .|-++ .++++ .++..++..|.|.|.+++.
T Consensus 367 ~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred cccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 3458999883 23 44443 33443 5899999999999998753
No 341
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=77.80 E-value=17 Score=35.88 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=62.0
Q ss_pred CCCeeeEeecccchHHHHHHH---hcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-C----
Q 024100 157 QHLVALDCGSGIGRITKNLLI---RYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-P---- 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa---~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~---- 226 (272)
+..+|.|-.||+|.+...... +.. ....|.|.++.....|+-++--. +....+....+|-..-+ .
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-----gi~~~~~i~~~dtl~~~~~~~~~ 260 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-----GIEGDANIRHGDTLSNPKHDDKD 260 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-----CCCccccccccccccCCcccccC
Confidence 445899999999987665431 111 34789999999999998876321 01112233333322111 1
Q ss_pred CCCcceeeEechhhh-------------------h---cCh-hhHHHHHHHHHHhcccCcEE
Q 024100 227 ETGRYDVIWVQWCIG-------------------H---LTD-DDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~-------------------h---l~d-~~~~~~l~~~~r~LkpgG~l 265 (272)
..++||.|+++--+. + .+. .....+++.|...|+|||+.
T Consensus 261 ~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~a 322 (489)
T COG0286 261 DKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRA 322 (489)
T ss_pred CccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceE
Confidence 225799888653321 0 111 11258999999999998754
No 342
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=77.71 E-value=5.4 Score=35.45 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCCCeeeEeecccchHHHHH--HH-hcCCcEEEEeCCHHHHHHHHHhccccCC---------------------------
Q 024100 156 NQHLVALDCGSGIGRITKNL--LI-RYFNEVDLLEPVSHFLDAARESLAPENH--------------------------- 205 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~L--La-~~~~~v~~vD~S~~mld~A~~~l~~~~~--------------------------- 205 (272)
..+-++-|..||.|++.--+ |. +...+|.+-|+++.+++.|++|+.-...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 45679999999999876533 21 2355889999999999999998744211
Q ss_pred ---------CCCCCCCceEEEEeCCCCCCC-----CCCcceeeEechhhhhcChh-------hHHHHHHHHHHhcccCcE
Q 024100 206 ---------MAPDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTDD-------DFVSFFKRAKENIARSGT 264 (272)
Q Consensus 206 ---------~~~~~~~~v~~~~~d~~~~~~-----~~~~fDlIvs~~vl~hl~d~-------~~~~~l~~~~r~LkpgG~ 264 (272)
...+...-..+.+.|+.+... .....|+|+.---..++++. -..++|..+..+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 011123346788888866321 12346999976555555432 256899999999955556
Q ss_pred EEEe
Q 024100 265 FLLS 268 (272)
Q Consensus 265 liv~ 268 (272)
+.++
T Consensus 210 V~v~ 213 (246)
T PF11599_consen 210 VAVS 213 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 343
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=77.68 E-value=23 Score=31.85 Aligned_cols=91 Identities=22% Similarity=0.143 Sum_probs=56.2
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+||=.|+| .|..+..++...+.++++++.+++..+.+++ +.. ...+.+ ... ...+.+|+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~--------~~~~~~-----~~~-~~~~~~d~ 217 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV--------ETVLPD-----EAE-SEGGGFDV 217 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC--------cEEeCc-----ccc-ccCCCCCE
Confidence 4566788877754 4555555555567789999999998888876 421 111111 111 12346999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+-... .. ..+....+.|+++|.++..
T Consensus 218 vid~~g------~~--~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 218 VVEATG------SP--SGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEECCC------Ch--HHHHHHHHHhhcCCEEEEE
Confidence 886421 11 3566677788999988753
No 344
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=77.52 E-value=16 Score=32.91 Aligned_cols=88 Identities=11% Similarity=-0.038 Sum_probs=53.8
Q ss_pred eeeEeeccc--chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGt--G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+|.=||+|. |.++..| .+.+.+|.++|.++..++.+.+.- .+.....+.+. -...|+|+..
T Consensus 2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a~~~g------------~~~~~~~~~~~----~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERAIERG------------LVDEASTDLSL----LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHCC------------CcccccCCHhH----hcCCCEEEEc
Confidence 355578773 4455545 466778999999998888776531 11111111111 1357888876
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
-.. ....++++++...++++..+.+.-
T Consensus 65 vp~-----~~~~~~~~~l~~~l~~~~ii~d~~ 91 (279)
T PRK07417 65 LPI-----GLLLPPSEQLIPALPPEAIVTDVG 91 (279)
T ss_pred CCH-----HHHHHHHHHHHHhCCCCcEEEeCc
Confidence 543 334577888888888887666543
No 345
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.50 E-value=25 Score=32.09 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=57.1
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-------CCCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFT 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-------~~~~~ 225 (272)
+.++.+||=.|+|. |..+..++...+.+ |.+++.+++..+.+++ +.. ...+.....+ +....
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-LGA--------THTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCC--------cEEeccccccchhHHHHHHHHh
Confidence 45667787777764 77777775455666 8888888888777755 211 1111111111 11111
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-.... . ..+....+.|+++|.++..
T Consensus 231 -~~~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 -GGKGPDVVIECTGA------E--SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred -CCCCCCEEEECCCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 22459999865331 1 3667778899999988753
No 346
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.45 E-value=17 Score=36.99 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=59.4
Q ss_pred CeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCccee
Q 024100 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fDl 233 (272)
.+|+=+||| .|+.....|.+.+..++++|.+++.++.+++. ....+.+|..+.+. .-++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-------------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 578888887 56555455556677999999999999888652 24678888866531 1247888
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++..- |++....+-...+.+.|+-.++.
T Consensus 468 vvv~~~-----d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 468 LINAID-----DPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred EEEEeC-----CHHHHHHHHHHHHHhCCCCeEEE
Confidence 876542 44444444445555667655553
No 347
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=77.22 E-value=14 Score=33.45 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCCC--CCCCC
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF--TPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~~--~~~~~ 229 (272)
..++.+||=.|+ |.|..+..++...+.+|.+++.+++-.+.+++ +.. ...++.... ++.+. ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa--------~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGF--------DVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC--------CEEEeccccccHHHHHHHhCCC
Confidence 456778888884 58888888865567789999988888888865 321 111221111 11110 01123
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+-.-. . ..+....+.|+++|.++..
T Consensus 207 gvdvv~d~~G--~-------~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVG--G-------EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCC--H-------HHHHHHHHHhCcCcEEEEe
Confidence 6898875322 1 2346678889999998753
No 348
>PTZ00357 methyltransferase; Provisional
Probab=77.19 E-value=7.2 Score=40.35 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=62.6
Q ss_pred CeeeEeecccchHHHHHHHh---cC--CcEEEEeCCHHHHHHHHHhcccc-CCCC--CCCCCceEEEEeCCCCCCCCC--
Q 024100 159 LVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPE-NHMA--PDMHKATNFFCVPLQDFTPET-- 228 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~---~~--~~v~~vD~S~~mld~A~~~l~~~-~~~~--~~~~~~v~~~~~d~~~~~~~~-- 228 (272)
..|+=+|+|-|-+....|.. .+ -++.+||=++..+.....+.... .+.. ......|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999776655422 11 26788996644332332222111 1100 011457999999999885331
Q ss_pred ---------CcceeeEechhhhhcChhhH-HHHHHHHHHhccc----CcE
Q 024100 229 ---------GRYDVIWVQWCIGHLTDDDF-VSFFKRAKENIAR----SGT 264 (272)
Q Consensus 229 ---------~~fDlIvs~~vl~hl~d~~~-~~~l~~~~r~Lkp----gG~ 264 (272)
+++|+|||- .|+-|.|.|+ -+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369997763 3455655554 3677777777776 665
No 349
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.09 E-value=14 Score=34.05 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=34.2
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~ 198 (272)
..++.+||=.|||. |..+..++...+.+|++++.++.-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 45677999999864 777776755556789999999998888865
No 350
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=77.01 E-value=12 Score=34.14 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=60.4
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCC-C-CCCCC
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~ 229 (272)
+.++.+||=.|+ |.|..+..++...+.+|.++..+++-.+.+++.+.. ...+++... ++.+ + ....+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF--------DDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--------ceeEEcCCcccHHHHHHHhCCC
Confidence 456778988885 678888888666677899988888888888764421 111221111 1111 0 01124
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+-.-. . ..+..+.+.|+++|.++..
T Consensus 221 gvd~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG-------G--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCcEEEEe
Confidence 6898875322 1 3566778899999998753
No 351
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=76.62 E-value=11 Score=34.97 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=63.3
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCC-C
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET-G 229 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~ 229 (272)
+.+..+||=.| .|.|.++.+|+...+..+.++-.|++-.+.+++.- ....+++...|+.+- .... .
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lG---------Ad~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELG---------ADHVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcC---------CCEEEcCCcccHHHHHHHHcCCC
Confidence 45678899888 56789999896555557777777776666555432 234556666554321 1222 3
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+..--- ..+.+....|+++|.++..
T Consensus 211 gvDvv~D~vG~---------~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 211 GVDVVLDTVGG---------DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred CceEEEECCCH---------HHHHHHHHHhccCCEEEEE
Confidence 69999865542 4666678889999988754
No 352
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=76.61 E-value=22 Score=29.62 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=57.8
Q ss_pred CeeeEeecccchHHH---HHHH---hcCCcEEEEeCCHHHHHHHHHhccccCCC--------CCCCCCceEEEEeCC-CC
Q 024100 159 LVALDCGSGIGRITK---NLLI---RYFNEVDLLEPVSHFLDAARESLAPENHM--------APDMHKATNFFCVPL-QD 223 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~---~LLa---~~~~~v~~vD~S~~mld~A~~~l~~~~~~--------~~~~~~~v~~~~~d~-~~ 223 (272)
.++||+-+|.|-..+ +++. +...+|.++.|.....+...+.+...... .......++..+... ..
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~ 85 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGH 85 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHH
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHH
Confidence 389999999996654 2221 24678999999999888888877543210 011223445544321 00
Q ss_pred C---CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccC
Q 024100 224 F---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS 262 (272)
Q Consensus 224 ~---~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg 262 (272)
+ +..-..||+||+-.+ |++|+.-..+...+...-..|
T Consensus 86 ~~~~p~~~~~yd~II~DEc--H~~Dp~sIA~rg~l~~~~~~g 125 (148)
T PF07652_consen 86 FLLNPCRLKNYDVIIMDEC--HFTDPTSIAARGYLRELAESG 125 (148)
T ss_dssp HHHTSSCTTS-SEEEECTT--T--SHHHHHHHHHHHHHHHTT
T ss_pred HhcCcccccCccEEEEecc--ccCCHHHHhhheeHHHhhhcc
Confidence 0 112247999999999 999998666666666665555
No 353
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=76.53 E-value=11 Score=33.91 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCCeeeEeecccchHHHHH---HHhc---CCcEEEEeC-----CH---------------------HHHHHHHHhccccC
Q 024100 157 QHLVALDCGSGIGRITKNL---LIRY---FNEVDLLEP-----VS---------------------HFLDAARESLAPEN 204 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~L---La~~---~~~v~~vD~-----S~---------------------~mld~A~~~l~~~~ 204 (272)
-++.++|+||=-|..+..+ ++.. ..++.+.|. .+ .-++..++++....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 4569999999999876532 2222 235777762 11 12334444443221
Q ss_pred CCCCCCCCceEEEEeCCCCCCCC--CCcceeeEechhhhhcChh---hHHHHHHHHHHhcccCcEEEEec
Q 024100 205 HMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGHLTDD---DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 205 ~~~~~~~~~v~~~~~d~~~~~~~--~~~fDlIvs~~vl~hl~d~---~~~~~l~~~~r~LkpgG~liv~E 269 (272)
-...++.++.+.+.+--+. ..++ +|-|+.-+ --..+|..++..|.|||+|++-|
T Consensus 154 ----l~~~~v~~vkG~F~dTLp~~p~~~I-------All~lD~DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 154 ----LLDDNVRFVKGWFPDTLPDAPIERI-------ALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp ----TSSTTEEEEES-HHHHCCC-TT--E-------EEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred ----CCcccEEEECCcchhhhccCCCccE-------EEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 1235899999987543221 1222 33344321 23468899999999999998755
No 354
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=76.35 E-value=7.9 Score=35.34 Aligned_cols=96 Identities=20% Similarity=0.103 Sum_probs=55.5
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC---CCCCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL---QDFTPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~ 229 (272)
..++.+||=+|+| .|..+..++...+.+ |++++.+++-++.+++ +.. ...++....+. .+.. ...
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~-~ga--------~~~i~~~~~~~~~~~~~~-~~~ 230 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA-LGA--------DFVINSGQDDVQEIRELT-SGA 230 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCC--------CEEEcCCcchHHHHHHHh-CCC
Confidence 4456788888775 555666565445667 9999999888888755 311 11111111111 1111 123
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+-... .. ..+....+.|+++|.++..
T Consensus 231 ~~d~vid~~g------~~--~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIECSG------NT--AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCEEEECCC------CH--HHHHHHHHHhhcCCEEEEE
Confidence 6999885432 11 3456667889999988753
No 355
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=76.20 E-value=12 Score=34.99 Aligned_cols=94 Identities=13% Similarity=0.024 Sum_probs=51.2
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE-eCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fDl 233 (272)
.++.+||=.|+| .|..+..++...+.++.+++.++.-...+.+.+.. ...++... ..+... . +.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga--------~~vi~~~~~~~~~~~--~-~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA--------DSFLVSTDPEKMKAA--I-GTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC--------cEEEcCCCHHHHHhh--c-CCCCE
Confidence 355678878876 56676766555577888888766543333222311 00110000 011111 1 24788
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+-.-. .+ ..+.++.+.|++||.++..
T Consensus 251 vid~~g-----~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 251 IIDTVS-----AV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EEECCC-----CH---HHHHHHHHHhcCCcEEEEe
Confidence 874322 12 3667788899999998754
No 356
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.01 E-value=15 Score=29.46 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=53.4
Q ss_pred CCCeeeEeecccc-hHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-Ccceee
Q 024100 157 QHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG-~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlI 234 (272)
..++|.++|.|-= .++. .|++++..+.++|+.+. .|+ ..++|+..|+.+....- ...|+|
T Consensus 13 ~~gkVvEVGiG~~~~VA~-~L~e~g~dv~atDI~~~---~a~--------------~g~~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAK-RLAERGFDVLATDINEK---TAP--------------EGLRFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred cCCcEEEEccchHHHHHH-HHHHcCCcEEEEecccc---cCc--------------ccceEEEccCCCccHHHhhCccce
Confidence 3559999998864 3445 44788889999998776 221 35788888886543211 257777
Q ss_pred EechhhhhcChhhHHHHHHHHHHhccc
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIAR 261 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lkp 261 (272)
+|--. .+++...+-++.+.++-
T Consensus 75 YSiRp-----ppEl~~~ildva~aVga 96 (129)
T COG1255 75 YSIRP-----PPELQSAILDVAKAVGA 96 (129)
T ss_pred eecCC-----CHHHHHHHHHHHHhhCC
Confidence 76544 35666666666655543
No 357
>PRK10458 DNA cytosine methylase; Provisional
Probab=75.53 E-value=17 Score=35.90 Aligned_cols=42 Identities=19% Similarity=0.089 Sum_probs=34.0
Q ss_pred CCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhc
Q 024100 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l 200 (272)
..+++|+=||.|.++..+ ... +.-|-++|.++...+.-+.+.
T Consensus 88 ~~~~iDLFsGiGGl~lGf-e~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGF-EAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHH-HHcCCEEEEEEechHHHHHHHHHHc
Confidence 569999999999999988 454 445577899998888877775
No 358
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=75.48 E-value=5.3 Score=32.10 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=24.3
Q ss_pred Eeecccc--hHHHHHHH-hc--CCcEEEEeCCHHHHHHHHHh
Q 024100 163 DCGSGIG--RITKNLLI-RY--FNEVDLLEPVSHFLDAARES 199 (272)
Q Consensus 163 DiGcGtG--~~t~~LLa-~~--~~~v~~vD~S~~mld~A~~~ 199 (272)
|||+..| ..+..++. .. ...|.++||++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66555532 22 45788999999999988888
No 359
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.47 E-value=11 Score=34.27 Aligned_cols=92 Identities=10% Similarity=0.026 Sum_probs=55.6
Q ss_pred CeeeEeec--ccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-C-CCCCCccee
Q 024100 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGc--GtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fDl 233 (272)
.+||=.|+ |.|..+..++...+. +|.+++.+++-.+.+++.+.. ...+.....++.+ + ...++.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa--------~~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF--------DAAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC--------cEEEECCCCCHHHHHHHHCCCCceE
Confidence 68888875 688888888655566 799999998888887765521 1111111111110 0 011246999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+-.-. . ..+.++.+.|+++|.++.
T Consensus 228 vid~~g-----~----~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 228 YFDNVG-----G----EISDTVISQMNENSHIIL 252 (345)
T ss_pred EEECCC-----c----HHHHHHHHHhccCCEEEE
Confidence 885322 1 124667788999998875
No 360
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=75.42 E-value=13 Score=33.86 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=55.3
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~ 228 (272)
..++.+||-.|+| .|..+..++...+. .+.+++.++...+.+++. .. ...+.....++ .... ..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~--------~~vi~~~~~~~~~~i~~~~-~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA--------TDIINPKNGDIVEQILELT-GG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC--------cEEEcCCcchHHHHHHHHc-CC
Confidence 3456788887765 47777767544453 688888888777776643 10 11111111111 1111 22
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+.+|+|+....- . ..+.+..+.|+++|.++.
T Consensus 235 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 235 RGVDCVIEAVGF------E--ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CCCcEEEEccCC------H--HHHHHHHHHhhcCCEEEE
Confidence 469998854221 1 467777889999998875
No 361
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.06 E-value=35 Score=31.53 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=70.2
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCC-HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CC--C-----CC
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FT--P-----ET 228 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S-~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~--~-----~~ 228 (272)
.-|+-+|||-=.=.-.+ .....+...|++ |+.++.=++.+..... .....++++..|+.+ ++ . ..
T Consensus 94 ~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~---~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 94 RQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGA---TPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred cEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCC---CCCceEEEEeccccccchHHHHHhcCCCc
Confidence 46899999854333323 223357777754 4455555555543210 112378899999873 21 1 12
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.-=++++-.++.||+.++..++|+.+..+..||-.+++..
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 34456788999999999999999999999999998887654
No 362
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=74.27 E-value=6.7 Score=35.55 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=25.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-------CcEEEEeC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEP 188 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-------~~v~~vD~ 188 (272)
+.+...++|+|||.|.++..+ +... ..+.+||-
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v-~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWV-AQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHH-HHHhhhcccCCccEEEEec
Confidence 356679999999999999977 4543 46788884
No 363
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=73.39 E-value=28 Score=34.73 Aligned_cols=91 Identities=11% Similarity=-0.009 Sum_probs=52.2
Q ss_pred CeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCccee
Q 024100 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fDl 233 (272)
.+++=+||| .|+.....|.+.+.++.++|.+++.++.+++. ....+.+|..+.. ..-+++|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-------------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-------------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-------------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 355556665 33333333344577999999999988888752 4578888886642 11247886
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++.-. |++-...+-.+.+...|+..++.
T Consensus 485 viv~~~-----~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 485 LLLTIP-----NGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred EEEEcC-----ChHHHHHHHHHHHHHCCCCeEEE
Confidence 664322 22211233334455567666653
No 364
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=73.00 E-value=14 Score=31.10 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=55.9
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCH-HHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---------CCCC
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PETG 229 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~-~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 229 (272)
.|+.+|||-=.....+ ....+.+..+|++. ++++.-++.+..... ....+.+++.+|+.+.. +..+
T Consensus 81 qvV~LGaGlDTr~~Rl-~~~~~~~~~~evD~p~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRL-DNPAGGVRWFEVDLPEVIALKRRLLPESGA---RPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp EEEEET-TT--HHHHH-HHTTTTEEEEEEE-HHHHHHHHHHHHHTHH---HHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred EEEEcCCCCCchHHHh-hccccceEEEEeCCHHHHHHHHHHHHhCcc---cCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 7999999987777767 35444777777444 356655555543200 00124678999997421 1223
Q ss_pred cceeeEechhhhhcChhhHHHHHHHH
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRA 255 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~ 255 (272)
..-++++..++.|++.++...+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 55678888999999999888888876
No 365
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=72.93 E-value=23 Score=31.55 Aligned_cols=95 Identities=14% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE--eCCCCCCCCCCcc
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQDFTPETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~f 231 (272)
.+..+||=+|+| .|..+..++...+.. |.+++.++.-++.+++. .. ...++... ..+.+.. ....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga--------~~~i~~~~~~~~~~~~~-~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF-GA--------TALAEPEVLAERQGGLQ-NGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CC--------cEecCchhhHHHHHHHh-CCCCC
Confidence 356688888875 566666564444555 88899888888887663 11 01111100 0001111 12358
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+-.-. .. ..++.+.+.|+|+|.++..
T Consensus 189 d~vid~~G------~~--~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 189 DVALEFSG------AT--AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CEEEECCC------Ch--HHHHHHHHHhcCCCEEEEe
Confidence 88875322 12 4677778899999998753
No 366
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=72.78 E-value=12 Score=34.06 Aligned_cols=96 Identities=18% Similarity=0.099 Sum_probs=57.1
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC---CCCCCCCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d---~~~~~~~~~ 229 (272)
..++.+||-.|+|. |..+..++...+.. +.+++.++...+.+++ +.. ...+...... +.... ...
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~-~g~--------~~~~~~~~~~~~~~~~~~-~~~ 226 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE-LGA--------DDTINPKEEDVEKVRELT-EGR 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cCC--------CEEecCccccHHHHHHHh-CCC
Confidence 34567888888765 77777775555666 8999888888777744 211 1111111111 11111 223
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+.+.. .. ..+..+.+.|+++|.++..
T Consensus 227 ~~d~vld~~g------~~--~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 227 GADLVIEAAG------SP--ATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCEEEECCC------CH--HHHHHHHHHhhcCCEEEEE
Confidence 5999885421 12 4667778899999998764
No 367
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=72.68 E-value=16 Score=32.89 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=58.7
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-C-CCCCCc
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~ 230 (272)
..++.+||=.| .|.|..+..++...+.+|.+++.+++-.+.+++ +.. ...++....++.+ + ....+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga--------~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGF--------DAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC--------CEEEeCCCccHHHHHHHHCCCC
Confidence 45667888777 467888888865667789999988888888866 321 1111111111110 0 011246
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+|+-.-. . ..+....+.|+++|.++..
T Consensus 212 vd~vld~~g-------~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-------G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-------H--HHHHHHHHhhccCCEEEEE
Confidence 898874322 1 3567778889999998753
No 368
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=72.21 E-value=12 Score=29.97 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=53.5
Q ss_pred eEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHh-ccccCCCCCCCCCceEEEE-eCCCCCCCCCCcceeeEech
Q 024100 162 LDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES-LAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 162 LDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~-l~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fDlIvs~~ 238 (272)
+=+|+| .|.+-...|++.+.+|+++.-++ -++.-++. +... .......+.. ............||+|+..-
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTIT-----GPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEE-----ETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEE-----ecccceecccccccCcchhccCCCcEEEEEe
Confidence 335666 55555555567788999998777 55543332 1100 0011111111 11111111235899999764
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
=- .+...+++.+...+.|+..++...|
T Consensus 76 Ka-----~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 76 KA-----YQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp SG-----GGHHHHHHHHCTGEETTEEEEEESS
T ss_pred cc-----cchHHHHHHHhhccCCCcEEEEEeC
Confidence 22 2345799999999999987776543
No 369
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.54 E-value=19 Score=36.40 Aligned_cols=91 Identities=11% Similarity=0.079 Sum_probs=55.4
Q ss_pred CeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCccee
Q 024100 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fDl 233 (272)
.+|+=+|+| .|+.....|.+.+..++++|.+++.++.+++. ....+.+|..+.+. .-++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-------------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-------------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 356655655 33333333445677999999999999888652 34678888866431 1237888
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++..- |++-...+-...+.+.|...++.
T Consensus 468 vv~~~~-----d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 468 IVITCN-----EPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred EEEEeC-----CHHHHHHHHHHHHHHCCCCeEEE
Confidence 776543 33333344444556677776664
No 370
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=70.92 E-value=38 Score=30.33 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=51.8
Q ss_pred eeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 160 VALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 160 ~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
+|+=+|+|. |......|++.+.+|++++.+++.++..++.- ... . .........-..+.... ..+|+|+..-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g--~~~--~--~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENG--LRL--E--DGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcC--Ccc--c--CCceeecccCCCChhHc-CCCCEEEEec
Confidence 466788873 43333344567789999998776666554421 000 0 01111000011111111 4789988654
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
-- .+...+++.+...+.++..++..
T Consensus 75 k~-----~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 75 KA-----YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cc-----ccHHHHHHHHhhhcCCCCEEEEe
Confidence 32 23447888888888877766643
No 371
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.86 E-value=49 Score=31.62 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=51.6
Q ss_pred eeeEeecccchHHHHHH---HhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcce
Q 024100 160 VALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LL---a~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD 232 (272)
+|+=+|| |.++..++ .+.+..|.++|.+++-++.+++.. .+.++.+|..+.. ..-..+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL------------DVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc------------CEEEEEeCCCCHHHHHHcCCCcCC
Confidence 4566666 55555543 345779999999998877766532 3567777765421 1124688
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
.|++..- +++...++....+.+.|.-.++
T Consensus 68 ~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 68 LLIAVTD-----SDETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred EEEEecC-----ChHHHHHHHHHHHHhcCCCeEE
Confidence 8776532 2333445555556664544433
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.76 E-value=58 Score=31.10 Aligned_cols=68 Identities=19% Similarity=0.064 Sum_probs=44.3
Q ss_pred CCCeeeEeecccchHHHHH---HHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCC
Q 024100 157 QHLVALDCGSGIGRITKNL---LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~L---La~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 229 (272)
...+++=||+| .++..+ |.+.+..|+++|.+++.++..++.. ..+.++.+|..+.. ..-.
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----------~~~~~i~gd~~~~~~L~~~~~~ 296 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----------PNTLVLHGDGTDQELLEEEGID 296 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----------CCCeEEECCCCCHHHHHhcCCc
Confidence 35678888875 444433 3455779999999999888877653 24567777775431 1124
Q ss_pred cceeeEec
Q 024100 230 RYDVIWVQ 237 (272)
Q Consensus 230 ~fDlIvs~ 237 (272)
.+|.|++.
T Consensus 297 ~a~~vi~~ 304 (453)
T PRK09496 297 EADAFIAL 304 (453)
T ss_pred cCCEEEEC
Confidence 68887754
No 373
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=70.45 E-value=27 Score=32.38 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=52.3
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+||=.|+| .|..+..++...+.++++++.+++..+.+.+.+.. .. .+...+...+......+|+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga---------~~-~i~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA---------DD-YLVSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC---------cE-EecCCChHHHHHhcCCCcEE
Confidence 355678777764 56666666544566788888777666555544421 10 01111101110011247887
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+-.-. .. ..+..+.+.|+++|.++..
T Consensus 249 id~~g-----~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 249 IDTVP-----VF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EECCC-----ch---HHHHHHHHHhccCCEEEEE
Confidence 74321 11 3666677889999988764
No 374
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.56 E-value=53 Score=30.03 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=56.2
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~ 228 (272)
..++.+||=.|+| .|..+..++...+. .+.+++.++.-.+.+++ +.. ...++....++ ..+. ..
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~~v~~~~~~~~~~i~~~~-~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE-YGA--------TDIVDYKNGDVVEQILKLT-GG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC--------ceEecCCCCCHHHHHHHHh-CC
Confidence 4566788888876 56666666544455 58889988888888765 311 11111111111 0111 22
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..+|+|+-+-. .. ..+..+.+.|+++|.++.
T Consensus 234 ~~~d~vld~~g------~~--~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 234 KGVDAVIIAGG------GQ--DTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCCcEEEECCC------CH--HHHHHHHHHhhcCCEEEE
Confidence 36898875322 11 467788888999998875
No 375
>PLN02740 Alcohol dehydrogenase-like
Probab=69.52 E-value=24 Score=33.10 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=54.9
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe--CCCC-C-CCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~--d~~~-~-~~~~ 228 (272)
..++.+||=+||| .|..+..++...+. .|.++|.++.-++.+++ +.. ...++.... ++.+ + ....
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga--------~~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-MGI--------TDFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-cCC--------cEEEecccccchHHHHHHHHhC
Confidence 4567789989876 55666666444555 69999999988888865 311 111111110 1111 1 0111
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv 267 (272)
+.+|+|+-.-. .+ ..+......+++| |.+++
T Consensus 267 ~g~dvvid~~G-----~~---~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 267 GGVDYSFECAG-----NV---EVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCCEEEECCC-----Ch---HHHHHHHHhhhcCCCEEEE
Confidence 25898875333 12 3566666778886 87765
No 376
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.42 E-value=50 Score=28.06 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=57.2
Q ss_pred CCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--------
Q 024100 158 HLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------- 227 (272)
Q Consensus 158 ~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-------- 227 (272)
..+||=.|++ .|......+.+.+.+|.+++-++.-++...+.+.. ..++.++.+|+.+....
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK--------YGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEECCCCCHHHHHHHHHHHH
Confidence 3478888874 34433334456678999999887665554443321 12577888888653200
Q ss_pred --CCcceeeEechhhhhc-Chhh--------------HHHHHHHHHHhcccCcEEEEecC
Q 024100 228 --TGRYDVIWVQWCIGHL-TDDD--------------FVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 228 --~~~fDlIvs~~vl~hl-~d~~--------------~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
-+..|.|+.+...... +..+ ...+++.+...++++|.++..-+
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 1246877755432110 0000 11234555566677887766543
No 377
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.08 E-value=39 Score=29.61 Aligned_cols=75 Identities=13% Similarity=0.012 Sum_probs=41.4
Q ss_pred CCeeeEeecc----cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-------
Q 024100 158 HLVALDCGSG----IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (272)
Q Consensus 158 ~~~VLDiGcG----tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------- 226 (272)
+..+|=.|++ .|.-....+++.+.+|.+++.++...+...+.... ...+.++.+|+.+..-
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE--------LDAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh--------hccceEEecCcCCHHHHHHHHHH
Confidence 4578888864 55444444456788998888765433222221110 1123466777755320
Q ss_pred ---CCCcceeeEechhh
Q 024100 227 ---ETGRYDVIWVQWCI 240 (272)
Q Consensus 227 ---~~~~fDlIvs~~vl 240 (272)
.-++.|+++.+..+
T Consensus 82 ~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHcCCCCEEEEcCcc
Confidence 01468998876543
No 378
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=68.61 E-value=23 Score=32.49 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=53.9
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC---CCCCCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d---~~~~~~~~~ 229 (272)
..++.+||=.||| .|..+..++...+.+ |.+++.++.-++.+++ +.. ...++....+ +.... ...
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~Ga--------~~~i~~~~~~~~~~~~~~-~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGA--------MQTFNSREMSAPQIQSVL-REL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCC--------ceEecCcccCHHHHHHHh-cCC
Confidence 3456788888875 455666564445655 6889988888887754 311 1111111111 11111 123
Q ss_pred cce-eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYD-VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fD-lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+| +|+-.-. . . ..+....+.|++||.++..
T Consensus 228 ~~d~~v~d~~G--~----~--~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 228 RFDQLILETAG--V----P--QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCCeEEEECCC--C----H--HHHHHHHHHhhcCCEEEEE
Confidence 577 5443211 1 2 4677788999999998764
No 379
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=68.31 E-value=8.5 Score=31.17 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=42.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-CcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlIv 235 (272)
...+|+|+|-|.=.-....|.+.+-.|+++|..+. .+. ..++++.-|+.+-.+.- ...|+|+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~--------------~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP--------------EGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S---------------------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc--------------cCcceeeecccCCCHHHhcCCcEEE
Confidence 34599999999654433355678889999998886 222 25678888886543211 3688888
Q ss_pred echhhhhcChhhHHHHHHHHHHh
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKEN 258 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~ 258 (272)
|-.. .+|+...+-++.+.
T Consensus 76 SiRP-----P~El~~~il~lA~~ 93 (127)
T PF03686_consen 76 SIRP-----PPELQPPILELAKK 93 (127)
T ss_dssp EES-------TTSHHHHHHHHHH
T ss_pred EeCC-----ChHHhHHHHHHHHH
Confidence 7665 34555666666544
No 380
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=68.28 E-value=51 Score=29.65 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=50.6
Q ss_pred eeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 160 VALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 160 ~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
+|+=+|+|. |......|++.+.+|++++. ++.++..++.--.. ........+...-..+.......+|+|+..-
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVI----RSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEE----EeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 466678884 44333344677889999987 55555554320000 0000011110000111111114789887653
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
-- .+...+++++...+.++..++..
T Consensus 77 k~-----~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 77 KA-----YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred cc-----cCHHHHHHHHHhhcCCCCEEEEe
Confidence 32 23457888888888887766543
No 381
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=68.02 E-value=7.4 Score=32.47 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=33.7
Q ss_pred cCCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCC
Q 024100 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDG 78 (272)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G 78 (272)
.+...-++..|++|++++-+++.+++.- |.++.|.+-|.+..|
T Consensus 68 ~~~D~vvly~PKaK~e~~~lL~~l~~~L--~~g~~i~vVGEnk~G 110 (155)
T PF08468_consen 68 QDFDTVVLYWPKAKAEAQYLLANLLSHL--PPGTEIFVVGENKGG 110 (155)
T ss_dssp TT-SEEEEE--SSHHHHHHHHHHHHTTS---TT-EEEEEEEGGGT
T ss_pred cCCCEEEEEccCcHHHHHHHHHHHHHhC--CCCCEEEEEecCccc
Confidence 4567889999999999999999999954 227899999999999
No 382
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=67.49 E-value=22 Score=33.84 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=62.2
Q ss_pred CCCeeeEeecccchHHHHHH---Hhc--C-C--cEEEEeC----CHHHHHHHHHhccccCCCCCCCCCceEEEEe---CC
Q 024100 157 QHLVALDCGSGIGRITKNLL---IRY--F-N--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV---PL 221 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LL---a~~--~-~--~v~~vD~----S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~---d~ 221 (272)
+...|+|+|.|.|.--..|+ +.+ + + ++|+|+. +..-++.+.+++... ++..+-...|... ++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f---A~~lgv~fef~~v~~~~~ 186 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEF---ARSLGVPFEFHPVVVESL 186 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH---HHHcCccEEEEecccCch
Confidence 45689999999996555454 222 1 2 6789988 777888887776543 1112223444442 44
Q ss_pred CCCCC-----CCCcceeeEechhhhhcChhh------HHHHHHHHHHhcccCcEEEEe
Q 024100 222 QDFTP-----ETGRYDVIWVQWCIGHLTDDD------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 222 ~~~~~-----~~~~fDlIvs~~vl~hl~d~~------~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++.+ .++..=+|-+.+.|||+.+.. ...+|+.++ .|+|.-++++-
T Consensus 187 e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~vvv~~E 243 (374)
T PF03514_consen 187 EDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPKVVVLVE 243 (374)
T ss_pred hhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCCEEEEEe
Confidence 44422 122222333667789997321 224665554 77998666543
No 383
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.01 E-value=15 Score=33.52 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=58.3
Q ss_pred eeeEeeccc--chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccC--CCCCCC---------CCceEEEEeCCCCCCC
Q 024100 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN--HMAPDM---------HKATNFFCVPLQDFTP 226 (272)
Q Consensus 160 ~VLDiGcGt--G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~--~~~~~~---------~~~v~~~~~d~~~~~~ 226 (272)
+|-=||+|+ +.++..+ +..+.+|+++|.+++.++.+++++...- ...+.. ..++++ ..|++.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~-a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~-- 82 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVC-ARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF-- 82 (286)
T ss_pred EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh--
Confidence 677889983 3444434 5778899999999999998776543210 000000 012222 2333222
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhc-ccCcEEEEecC
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENI-ARSGTFLLSHS 270 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~L-kpgG~liv~E~ 270 (272)
...|+|+-+ +.+.+ +....+|.++.+.+ +|+..+...-|
T Consensus 83 --~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 --ADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred --CCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 356777654 22221 22347889888888 77777765443
No 384
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=65.99 E-value=22 Score=29.12 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=53.8
Q ss_pred eeEeecccchHHHH-HHHhcCCcEEEEeCCHHHHHHHHHhccccCCCC-CCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 161 ALDCGSGIGRITKN-LLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 161 VLDiGcGtG~~t~~-LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
|.=||+|.+..+.. .++..+.+|++...+++.++.-++.-....... .....++.+ ..|+++. -...|+|+..-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a---~~~ad~Iiiav 77 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA---LEDADIIIIAV 77 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH---HTT-SEEEE-S
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH---hCcccEEEecc
Confidence 55578886655543 446678899999999987777665432111000 001123332 2343221 12568877543
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.- ..++.+++++...++++-.++.
T Consensus 78 Ps-----~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 78 PS-----QAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -G-----GGHHHHHHHHTTTSHTT-EEEE
T ss_pred cH-----HHHHHHHHHHhhccCCCCEEEE
Confidence 32 2245799999998877665543
No 385
>PRK08324 short chain dehydrogenase; Validated
Probab=65.58 E-value=45 Score=34.19 Aligned_cols=105 Identities=23% Similarity=0.184 Sum_probs=62.2
Q ss_pred CCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----C---
Q 024100 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E--- 227 (272)
Q Consensus 158 ~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-----~--- 227 (272)
+.+||=.|+ |.|......+.+.+.+|.+++.++.-++.+.+.+.. . ..+.++.+|+.+... .
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~-~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------P-DRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------c-CcEEEEEecCCCHHHHHHHHHHHH
Confidence 467888885 455544444456778999999888777666655421 1 357788888765321 0
Q ss_pred --CCcceeeEechhhhh------cChhh-----------HHHHHHHHHHhccc---CcEEEEecC
Q 024100 228 --TGRYDVIWVQWCIGH------LTDDD-----------FVSFFKRAKENIAR---SGTFLLSHS 270 (272)
Q Consensus 228 --~~~fDlIvs~~vl~h------l~d~~-----------~~~~l~~~~r~Lkp---gG~liv~E~ 270 (272)
-+..|+|+.+-.... .+.++ ...+++.+.+.+++ +|.|+..-|
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 135899886544211 11121 12445555666665 677776543
No 386
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=65.45 E-value=44 Score=30.47 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=52.2
Q ss_pred CeeeEeeccc-c-hHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 159 LVALDCGSGI-G-RITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 159 ~~VLDiGcGt-G-~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.+|.=||+|. | .++..| .+.+ ..|.++|.++.-++.+++. . .......+.++. -...|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~a~~~-g-----------~~~~~~~~~~~~---~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETRARAREL-G-----------LGDRVTTSAAEA---VKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHHHHhC-C-----------CCceecCCHHHH---hcCCCEE
Confidence 4688889885 3 344434 3444 3799999999877776542 1 001111122111 1357988
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..-.... ...++.++...+++|..+++.
T Consensus 71 iiavp~~~-----~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 71 ILCVPVGA-----SGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred EECCCHHH-----HHHHHHHHHhhCCCCCEEEeC
Confidence 87654322 346777777788888877664
No 387
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.43 E-value=8.8 Score=32.97 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=30.8
Q ss_pred CCCcceeeEechhhhhcCh----------hhHHHHHHHHHHhcccCcEEE
Q 024100 227 ETGRYDVIWVQWCIGHLTD----------DDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d----------~~~~~~l~~~~r~LkpgG~li 266 (272)
..+..|+|+++++|+-+.- ..+++++.+++.+|+|+..+|
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allI 96 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIV 96 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEE
Confidence 4467899999999987743 235678888888888887765
No 388
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=64.79 E-value=17 Score=32.60 Aligned_cols=77 Identities=12% Similarity=-0.022 Sum_probs=47.5
Q ss_pred HHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHH
Q 024100 172 TKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFV 249 (272)
Q Consensus 172 t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~ 249 (272)
++.| .+.+ ..|.++|.++..++.|.+.= .+.-...+.+.+ ..+|+|+.+--+. ...
T Consensus 2 A~aL-~~~g~~~~v~g~d~~~~~~~~a~~~g------------~~~~~~~~~~~~----~~~DlvvlavP~~-----~~~ 59 (258)
T PF02153_consen 2 ALAL-RKAGPDVEVYGYDRDPETLEAALELG------------IIDEASTDIEAV----EDADLVVLAVPVS-----AIE 59 (258)
T ss_dssp HHHH-HHTTTTSEEEEE-SSHHHHHHHHHTT------------SSSEEESHHHHG----GCCSEEEE-S-HH-----HHH
T ss_pred hHHH-HhCCCCeEEEEEeCCHHHHHHHHHCC------------CeeeccCCHhHh----cCCCEEEEcCCHH-----HHH
Confidence 4444 4555 68999999999998886531 112222221111 2579999876653 366
Q ss_pred HHHHHHHHhcccCcEEEEecC
Q 024100 250 SFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 250 ~~l~~~~r~LkpgG~liv~E~ 270 (272)
.+++++...+++|+.+.+.-|
T Consensus 60 ~~l~~~~~~~~~~~iv~Dv~S 80 (258)
T PF02153_consen 60 DVLEEIAPYLKPGAIVTDVGS 80 (258)
T ss_dssp HHHHHHHCGS-TTSEEEE--S
T ss_pred HHHHHhhhhcCCCcEEEEeCC
Confidence 899999999999999988654
No 389
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.32 E-value=12 Score=34.01 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=57.4
Q ss_pred eeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccC-------CCCCC-----CCCceEEEEeCCCCCCC
Q 024100 160 VALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-------HMAPD-----MHKATNFFCVPLQDFTP 226 (272)
Q Consensus 160 ~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~-------~~~~~-----~~~~v~~~~~d~~~~~~ 226 (272)
+|.=||+|. |.-....+++.+.+|.++|.+++.++.+++.+.... ..... ...++++ ..|+++.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a-- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA-- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH--
Confidence 577789884 322222445678899999999998888876532110 00000 0112332 2333221
Q ss_pred CCCcceeeEechhhhhcCh-hhHHHHHHHHHHhcccCcEEEEecC
Q 024100 227 ETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
-...|+|+..-. ++ +-...+|+++...++++-.|....|
T Consensus 82 -~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 82 -VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred -hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEEECcc
Confidence 135788876533 11 1245788898888887776655443
No 390
>PLN02827 Alcohol dehydrogenase-like
Probab=63.95 E-value=24 Score=33.18 Aligned_cols=96 Identities=11% Similarity=0.002 Sum_probs=53.9
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE--eCCCC-C-CCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQD-F-TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~--~d~~~-~-~~~~ 228 (272)
..++.+||=.|+| .|..+..++...+. .|.+++.++.-++.|++ +.. ...++... .++.. + ....
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~-lGa--------~~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT-FGV--------TDFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCC--------cEEEcccccchHHHHHHHHHhC
Confidence 4567789988875 45555555434454 58889988888888855 211 11111111 01111 0 0011
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv 267 (272)
+.+|+|+-.-. + + ..+....+.|++| |.++.
T Consensus 262 ~g~d~vid~~G--~---~---~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 262 GGADYSFECVG--D---T---GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCCEEEECCC--C---h---HHHHHHHHhhccCCCEEEE
Confidence 25888874322 1 2 3566677888998 98875
No 391
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=63.91 E-value=19 Score=36.76 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=33.7
Q ss_pred ceEEEEeCCCCCCC-CCCcceeeEech-hhhhcChhhH--HHHHHHHHHhcccCcEEE
Q 024100 213 ATNFFCVPLQDFTP-ETGRYDVIWVQW-CIGHLTDDDF--VSFFKRAKENIARSGTFL 266 (272)
Q Consensus 213 ~v~~~~~d~~~~~~-~~~~fDlIvs~~-vl~hl~d~~~--~~~l~~~~r~LkpgG~li 266 (272)
.++++.+|+.+.-. -...+|+|+.-. +=.+ ++++ ..+|+++.++++|||.+.
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEE
Confidence 55677788765322 124699998542 1111 2222 379999999999999885
No 392
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.23 E-value=77 Score=27.59 Aligned_cols=73 Identities=10% Similarity=-0.036 Sum_probs=42.6
Q ss_pred CCeeeEeec----ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-------
Q 024100 158 HLVALDCGS----GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (272)
Q Consensus 158 ~~~VLDiGc----GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------- 226 (272)
+.++|=.|+ |.|.-....+++.+.+|.+++-+....+...+ +. ...+.++.+|+.+..-
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~-~~---------~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK-LV---------DEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh-hc---------cCceeEEeCCCCCHHHHHHHHHH
Confidence 447887776 56655544446778899888766433322222 21 1246778888865320
Q ss_pred ---CCCcceeeEechhh
Q 024100 227 ---ETGRYDVIWVQWCI 240 (272)
Q Consensus 227 ---~~~~fDlIvs~~vl 240 (272)
.-++.|+++.+..+
T Consensus 77 ~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 77 IKERVGKIDGIVHAIAY 93 (252)
T ss_pred HHHHhCCCCEEEEcccc
Confidence 01468998876543
No 393
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=63.13 E-value=66 Score=28.24 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=44.8
Q ss_pred CCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--------
Q 024100 158 HLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------- 227 (272)
Q Consensus 158 ~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-------- 227 (272)
+.++|=.|++ .|......+++.+.+|.+++.++...+...+.+.. ...++.++.+|+.+...-
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA-------AGGEALAVKADVLDKESLEQARQQIL 82 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3467777764 44444444456778999999877666555444421 123577888888654210
Q ss_pred --CCcceeeEechh
Q 024100 228 --TGRYDVIWVQWC 239 (272)
Q Consensus 228 --~~~fDlIvs~~v 239 (272)
-++.|+++.+-.
T Consensus 83 ~~~g~id~li~~ag 96 (278)
T PRK08277 83 EDFGPCDILINGAG 96 (278)
T ss_pred HHcCCCCEEEECCC
Confidence 136888886543
No 394
>PRK07109 short chain dehydrogenase; Provisional
Probab=62.54 E-value=61 Score=29.93 Aligned_cols=73 Identities=21% Similarity=0.143 Sum_probs=45.3
Q ss_pred CeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC---------
Q 024100 159 LVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--------- 227 (272)
Q Consensus 159 ~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--------- 227 (272)
.+||=.|+ |.|......+++.+.+|.+++-++.-++...+.+.. ...++.++.+|+.+...-
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~-------~g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA-------AGGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-------cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 46777775 444444334456788999999888777666555432 123577888888654210
Q ss_pred -CCcceeeEech
Q 024100 228 -TGRYDVIWVQW 238 (272)
Q Consensus 228 -~~~fDlIvs~~ 238 (272)
-++.|++|.+-
T Consensus 82 ~~g~iD~lInnA 93 (334)
T PRK07109 82 ELGPIDTWVNNA 93 (334)
T ss_pred HCCCCCEEEECC
Confidence 13689888553
No 395
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=62.39 E-value=30 Score=31.46 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=54.9
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCCCCCcce
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD 232 (272)
..+..+||=.|+| .|..+..++...+.++++++.++.-++.+++ +.. ...++....++.. +... ..+|
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~--------~~~i~~~~~~~~~~~~~~-~~~d 230 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGA--------HHYIDTSKEDVAEALQEL-GGAK 230 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCC--------cEEecCCCccHHHHHHhc-CCCC
Confidence 4456688888864 5666665654556689999988887888854 321 0111111111110 0001 2478
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+.... .. ..+....+.|+++|.++..
T Consensus 231 ~vi~~~g------~~--~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 231 LILATAP------NA--KAISALVGGLAPRGKLLIL 258 (333)
T ss_pred EEEECCC------ch--HHHHHHHHHcccCCEEEEE
Confidence 8875321 11 4667778899999988753
No 396
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=61.40 E-value=29 Score=33.59 Aligned_cols=86 Identities=10% Similarity=-0.053 Sum_probs=50.2
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+.+|+=+|+| .|......+...+.+|.++|.++.-...|... . .. ..++++. - ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----------G---~~--v~~leea--l-~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----------G---FR--VMTMEEA--A-KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----------C---CE--eCCHHHH--H-hcCCEE
Confidence 356799999999 46666656555678999999887543333221 0 11 1122221 1 246888
Q ss_pred EechhhhhcChhhHHHHHH-HHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFK-RAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~-~~~r~LkpgG~liv 267 (272)
+..-. .. .++. +....+++|++++.
T Consensus 255 ItaTG------~~--~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 255 ITATG------NK--DVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred EECCC------CH--HHHHHHHHhcCCCCcEEEE
Confidence 76321 11 3444 36678889988864
No 397
>PRK07806 short chain dehydrogenase; Provisional
Probab=61.32 E-value=52 Score=28.24 Aligned_cols=104 Identities=16% Similarity=0.072 Sum_probs=53.6
Q ss_pred CCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCH-HHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-------
Q 024100 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------- 227 (272)
Q Consensus 158 ~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~-~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~------- 227 (272)
+.++|=.|+ |.|......+.+.+.+|.++.-+. ...+.....+.. ...++.++.+|+.+..--
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~-------~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA-------AGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh-------cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 357888886 455433333345677888876432 233333333321 123567788888654210
Q ss_pred ---CCcceeeEechhhhhcCh-----------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 ---TGRYDVIWVQWCIGHLTD-----------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ---~~~fDlIvs~~vl~hl~d-----------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
-+..|+|+.+.......+ .-...+++.+...++.+|.++..
T Consensus 79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 79 REEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 025788775433211100 11235666676666666766544
No 398
>PRK08655 prephenate dehydrogenase; Provisional
Probab=61.14 E-value=44 Score=32.46 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=50.8
Q ss_pred eeeEee-cc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCG-SG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiG-cG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+|.=+| +| .|......+.+.+.+|.+++.++.......... .+.+ ..+..+. -...|+|+..
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------------gv~~-~~~~~e~---~~~aDvVIla 65 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------------GVEY-ANDNIDA---AKDADIVIIS 65 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------------CCee-ccCHHHH---hccCCEEEEe
Confidence 455576 45 554333333456678999998876543222222 1111 1122111 1357998876
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
-...+ ...+++++...+++|..+++.-+
T Consensus 66 vp~~~-----~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 66 VPINV-----TEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred cCHHH-----HHHHHHHHHhhCCCCCEEEEccc
Confidence 55433 34677888888889888877543
No 399
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=60.77 E-value=97 Score=28.41 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=52.9
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-------CCCCCC
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-------QDFTPE 227 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-------~~~~~~ 227 (272)
++.+||=.|+| .|..+..++...+. +|.+++.++.-.+.+++ +.. ...+.....+. .+.. .
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~i~~~~-~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-FGA--------DATIDIDELPDPQRRAIVRDIT-G 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC--------CeEEcCcccccHHHHHHHHHHh-C
Confidence 55677777754 55555656544566 89999988887777653 311 11111111111 1111 1
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+|+|+-...- . ..+....+.|+++|.++..
T Consensus 247 ~~~~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 247 GRGADVVIEASGH------P--AAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCcEEEECCCC------h--HHHHHHHHHhccCCEEEEE
Confidence 2368998854211 1 3556667889999988753
No 400
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.53 E-value=45 Score=30.54 Aligned_cols=100 Identities=18% Similarity=0.071 Sum_probs=51.3
Q ss_pred CCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
..+|+=+|+| .|.+....|++.+.+|+++.-++ .+..+++--... .......+..............||+|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVD----SVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEE----eCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 3578888988 45544445567788999997654 222222100000 0001111110000011101247999886
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.-=-++ ..++++.+...+.+++.++..
T Consensus 79 avK~~~-----~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 79 GLKTTA-----NALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EecCCC-----hHhHHHHHhhhcCCCCEEEEe
Confidence 533222 336778888889999887654
No 401
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=60.23 E-value=14 Score=34.48 Aligned_cols=71 Identities=10% Similarity=0.157 Sum_probs=56.5
Q ss_pred eCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcE
Q 024100 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGT 264 (272)
Q Consensus 187 D~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~ 264 (272)
...+...+.+++++ .+|.++.+|+-++-- +.+..|-++...+-.++||.++..++.++.+.+.+|..
T Consensus 293 yl~~~~YEsir~n~-----------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~ 361 (414)
T COG5379 293 YLDEGVYESIRQNL-----------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGAR 361 (414)
T ss_pred hhchhhHHHHHhhh-----------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcE
Confidence 44555566666654 368889998876532 34789999999998899999999999999999999999
Q ss_pred EEEe
Q 024100 265 FLLS 268 (272)
Q Consensus 265 liv~ 268 (272)
+|..
T Consensus 362 VifR 365 (414)
T COG5379 362 VIFR 365 (414)
T ss_pred EEEe
Confidence 8864
No 402
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=59.02 E-value=1.1e+02 Score=27.31 Aligned_cols=90 Identities=14% Similarity=0.022 Sum_probs=52.8
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+||=.||| .|..+..++...+.++..++.++.-.+.+++ +. . . .++.. ... ....+|+
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g---------~-~-~~~~~--~~~--~~~~vD~ 228 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LG---------A-D-WAGDS--DDL--PPEPLDA 228 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hC---------C-c-EEecc--Ccc--CCCcccE
Confidence 3455677767765 4445555544557788889888877777743 31 0 0 11111 111 1246888
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.... .. ..+....+.|+++|.++..
T Consensus 229 vi~~~~------~~--~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 229 AIIFAP------VG--ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred EEEcCC------cH--HHHHHHHHHhhcCCEEEEE
Confidence 774321 11 4677788999999988764
No 403
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.90 E-value=44 Score=32.68 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=68.5
Q ss_pred CCCCeeeEee-cccc------hHHHHHHHhcCCcEEEE--e-CCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC
Q 024100 156 NQHLVALDCG-SGIG------RITKNLLIRYFNEVDLL--E-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 156 ~~~~~VLDiG-cGtG------~~t~~LLa~~~~~v~~v--D-~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~ 225 (272)
.++..||=+| =|.| -++.+| .+.+..|-+| | .=|..++..+.... .-.+.|+..+-+.-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~l-kk~~~kvllVaaD~~RpAA~eQL~~La~---------q~~v~~f~~~~~~~P 167 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYL-KKKGKKVLLVAADTYRPAAIEQLKQLAE---------QVGVPFFGSGTEKDP 167 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHH-HHcCCceEEEecccCChHHHHHHHHHHH---------HcCCceecCCCCCCH
Confidence 3567788887 3444 445544 4556666555 5 44667777766542 235677765433222
Q ss_pred C----------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCCC
Q 024100 226 P----------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSLI 272 (272)
Q Consensus 226 ~----------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~~ 272 (272)
. ..+.||+|+.--+=.|--|+++-.=++++++.++|.=.++|.|..+
T Consensus 168 v~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~ 224 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI 224 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 1 1236999997655434347777778888899999999999998754
No 404
>PRK12939 short chain dehydrogenase; Provisional
Probab=58.63 E-value=78 Score=26.95 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=44.3
Q ss_pred CCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----C---
Q 024100 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E--- 227 (272)
Q Consensus 158 ~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-----~--- 227 (272)
+.++|=.|+ |.|......+.+.+.+|.+++-++.-++...+.+.. ...++.++.+|+.+... .
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA-------AGGRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-------cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 346776665 344433333456677899998777666555444421 12467888899865421 0
Q ss_pred --CCcceeeEechh
Q 024100 228 --TGRYDVIWVQWC 239 (272)
Q Consensus 228 --~~~fDlIvs~~v 239 (272)
-+..|+|+.+..
T Consensus 80 ~~~~~id~vi~~ag 93 (250)
T PRK12939 80 AALGGLDGLVNNAG 93 (250)
T ss_pred HHcCCCCEEEECCC
Confidence 035788886543
No 405
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=58.34 E-value=1.1e+02 Score=27.86 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=53.6
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCCC
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETG 229 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~~ 229 (272)
.++.+||-.|+| .|..+..++...+.+ |.+++.++.-.+.+++. . ....++....++ .++. ...
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~-g--------~~~~v~~~~~~~~~~l~~~~-~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM-G--------ATYVVNPFKEDVVKEVADLT-DGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-C--------CcEEEcccccCHHHHHHHhc-CCC
Confidence 345567666665 566666665445665 88888788777766542 1 001111111111 1111 224
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+.... .+ ..+..+.+.|+++|.++..
T Consensus 230 ~~d~vld~~g------~~--~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSG------AP--KALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCC------CH--HHHHHHHHhhcCCCEEEEE
Confidence 6899886421 12 4677788889999988764
No 406
>PRK06139 short chain dehydrogenase; Provisional
Probab=58.23 E-value=38 Score=31.40 Aligned_cols=75 Identities=21% Similarity=0.142 Sum_probs=47.4
Q ss_pred CCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---------
Q 024100 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (272)
Q Consensus 158 ~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 226 (272)
+.+||=.|+ |.|......+++.+.+|.+++-+++-++...+.+.. ....+.++.+|+.+..-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~-------~g~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA-------LGAEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-------cCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 347777776 455555544567788999999888777766555432 12356677788764320
Q ss_pred -CCCcceeeEechh
Q 024100 227 -ETGRYDVIWVQWC 239 (272)
Q Consensus 227 -~~~~fDlIvs~~v 239 (272)
..+..|++|.+-.
T Consensus 80 ~~~g~iD~lVnnAG 93 (330)
T PRK06139 80 SFGGRIDVWVNNVG 93 (330)
T ss_pred HhcCCCCEEEECCC
Confidence 0146899886543
No 407
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.21 E-value=44 Score=30.18 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=54.8
Q ss_pred eeeEeeccc-c-hHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC--CCC---------CCCceEEEEeCCCCCCC
Q 024100 160 VALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM--APD---------MHKATNFFCVPLQDFTP 226 (272)
Q Consensus 160 ~VLDiGcGt-G-~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~--~~~---------~~~~v~~~~~d~~~~~~ 226 (272)
+|.=||+|. | .++..+ ++.+.+|.++|.+++.++.+.+.+...... ... ...++++ ..++.+.
T Consensus 3 ~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA-- 78 (288)
T ss_pred EEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh--
Confidence 567788872 3 344434 577889999999999999877543110000 000 0011222 2232211
Q ss_pred CCCcceeeEechhhhhcChhh-HHHHHHHHHHhcccCcEEEE
Q 024100 227 ETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv 267 (272)
-...|+|+.+-. .+.+ ...++.++.+.++|+..+.+
T Consensus 79 -~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 -VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred -hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 135788886533 1222 34788888888888876643
No 408
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=57.99 E-value=99 Score=28.50 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=53.8
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC------CCC
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~------~~~ 227 (272)
.++.+||=.|+| .|..+..++...+.. +.+++.++...+.+++ +.. ..++..+-.++ ...
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~-~g~-----------~~v~~~~~~~~~~~l~~~~~ 253 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE-LGA-----------THTVNAAKEDAVAAIREITG 253 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCC-----------ceEecCCcccHHHHHHHHhC
Confidence 455677766664 566666665445556 8889888888777754 311 11111111111 012
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+|+|+..-. .. ..+..+.+.|+++|.++..
T Consensus 254 ~~~~d~vld~vg-----~~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 254 GRGVDVVVEALG-----KP---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCCCCEEEEeCC-----CH---HHHHHHHHHHhcCCEEEEE
Confidence 246899885422 11 2566678899999998764
No 409
>PRK07985 oxidoreductase; Provisional
Probab=57.94 E-value=1.1e+02 Score=27.58 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCeeeEeec--ccchHHHHHHHhcCCcEEEEeCC--HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-------
Q 024100 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (272)
Q Consensus 158 ~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S--~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------- 226 (272)
+.++|=.|+ |.|......|++.+.+|.+++.+ ..-++...+.+.. ....+.++.+|+.+...
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEE-------CGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHH-------cCCeEEEEEccCCCHHHHHHHHHH
Confidence 457888886 44443333345677888887643 2233333333211 12356778888865320
Q ss_pred ---CCCcceeeEechh-------hhhcChhhHH-----------HHHHHHHHhcccCcEEEEecC
Q 024100 227 ---ETGRYDVIWVQWC-------IGHLTDDDFV-----------SFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 227 ---~~~~fDlIvs~~v-------l~hl~d~~~~-----------~~l~~~~r~LkpgG~liv~E~ 270 (272)
.-+..|+++.+.. +..++.+++. .+++.+...++.+|.||..-|
T Consensus 122 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS 186 (294)
T PRK07985 122 AHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS 186 (294)
T ss_pred HHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence 1135788875532 2233333332 233444555667887776443
No 410
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=57.34 E-value=1.2e+02 Score=26.03 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=36.9
Q ss_pred CCCeeeEeeccc-chH-HHHHHHhcCCcEEEEeCC--HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 157 QHLVALDCGSGI-GRI-TKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGt-G~~-t~~LLa~~~~~v~~vD~S--~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.+.+||=+|+|. |.. +..| .+.+.+|+++++. +...+.+.+ ..+.+....+..-.. ..+|
T Consensus 9 ~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~-------------~~i~~~~~~~~~~~l--~~ad 72 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEE-------------GKIRWKQKEFEPSDI--VDAF 72 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhC-------------CCEEEEecCCChhhc--CCce
Confidence 345899999984 332 3334 4677899999643 333222221 235555444433222 3688
Q ss_pred eeEech
Q 024100 233 VIWVQW 238 (272)
Q Consensus 233 lIvs~~ 238 (272)
+|++.-
T Consensus 73 lViaaT 78 (202)
T PRK06718 73 LVIAAT 78 (202)
T ss_pred EEEEcC
Confidence 888753
No 411
>PRK05872 short chain dehydrogenase; Provisional
Probab=57.19 E-value=1e+02 Score=27.65 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=45.1
Q ss_pred CCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---------
Q 024100 158 HLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (272)
Q Consensus 158 ~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 226 (272)
+.++|=.|++ .|......+++.+.+|.+++.++.-++...+.+.. ...+..+.+|+.+..-
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG--------DDRVLTVVADVTDLAAMQAAAEEAV 80 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4578877754 44444444456788999999888776665554421 2234555677765321
Q ss_pred -CCCcceeeEechhh
Q 024100 227 -ETGRYDVIWVQWCI 240 (272)
Q Consensus 227 -~~~~fDlIvs~~vl 240 (272)
.-+..|+++.+-.+
T Consensus 81 ~~~g~id~vI~nAG~ 95 (296)
T PRK05872 81 ERFGGIDVVVANAGI 95 (296)
T ss_pred HHcCCCCEEEECCCc
Confidence 01468999976543
No 412
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=56.46 E-value=48 Score=31.18 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=50.8
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHH-HHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~m-ld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+||=.|+| .|..+..++...+.+|.+++.+++- .+.+++ +.. ...++.. +.+.+....+.+|+|
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-lGa--------~~~i~~~--~~~~v~~~~~~~D~v 246 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGA--------DSFLVTT--DSQKMKEAVGTMDFI 246 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-CCC--------cEEEcCc--CHHHHHHhhCCCcEE
Confidence 56678878875 5666666654557788888876543 455533 211 0011110 101110001248888
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+-.-. .+ ..+..+.+.+++||.++..
T Consensus 247 id~~G-----~~---~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 247 IDTVS-----AE---HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred EECCC-----cH---HHHHHHHHhhcCCCEEEEE
Confidence 75322 12 3567778889999998754
No 413
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=56.08 E-value=25 Score=29.70 Aligned_cols=100 Identities=18% Similarity=0.170 Sum_probs=55.6
Q ss_pred eeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcccc-------CCCC----CCCCCceEEEEeCCCCCCCCC
Q 024100 161 ALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-------NHMA----PDMHKATNFFCVPLQDFTPET 228 (272)
Q Consensus 161 VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~-------~~~~----~~~~~~v~~~~~d~~~~~~~~ 228 (272)
|.=+|+|+ |.-...+++..+.+|.++|.+++.++.+++++... +... .....++++ ..|+++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~---- 76 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA---- 76 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG----
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH----
Confidence 45578874 32222244577899999999999999988776431 0000 001123443 3444433
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...|+|+=+- .+.+ +-+.++|+++.+.+.|+-.|...
T Consensus 77 ~~adlViEai-~E~l--~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 77 VDADLVIEAI-PEDL--ELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp CTESEEEE-S--SSH--HHHHHHHHHHHCCS-TTSEEEE-
T ss_pred hhhheehhhc-cccH--HHHHHHHHHHHHHhCCCceEEec
Confidence 1467766322 1221 33458999999999998887644
No 414
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.98 E-value=1.1e+02 Score=27.04 Aligned_cols=72 Identities=13% Similarity=0.000 Sum_probs=39.8
Q ss_pred CeeeEeecc----cch-HHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-------
Q 024100 159 LVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (272)
Q Consensus 159 ~~VLDiGcG----tG~-~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------- 226 (272)
.++|=.|+| .|+ ++..| ++.+.+|.+++.+....+.+.+... ......++.+|+.+..-
T Consensus 7 k~~lITGas~~~GIG~aia~~l-a~~G~~vil~~r~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~v~~~~~~ 77 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDKLKGRVEEFAA--------QLGSDIVLPCDVAEDASIDAMFAE 77 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHH-HHCCCEEEEEecchhHHHHHHHHHh--------ccCCceEeecCCCCHHHHHHHHHH
Confidence 467777874 554 34444 5778889888766432233322211 11234567788855320
Q ss_pred ---CCCcceeeEechh
Q 024100 227 ---ETGRYDVIWVQWC 239 (272)
Q Consensus 227 ---~~~~fDlIvs~~v 239 (272)
.-++.|+++.+-.
T Consensus 78 ~~~~~g~iD~linnAg 93 (262)
T PRK07984 78 LGKVWPKFDGFVHSIG 93 (262)
T ss_pred HHhhcCCCCEEEECCc
Confidence 0146899887654
No 415
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=55.66 E-value=52 Score=30.09 Aligned_cols=96 Identities=22% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~ 228 (272)
..++.+||=.|+| .|..+..++...+. .|.+++.+++-.+.+++ +.. ...++....++ .+.. ..
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~ga--------~~~i~~~~~~~~~~l~~~~-~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-LGA--------TIVLDPTEVDVVAEVRKLT-GG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCC--------CEEECCCccCHHHHHHHHh-CC
Confidence 3456677777754 55666666545565 78889988888888755 311 11111111111 1111 12
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+|+|+-.... . ..+..+.+.|+++|.++..
T Consensus 240 ~~~d~vid~~g~-----~---~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 240 GGVDVSFDCAGV-----Q---ATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCCEEEECCCC-----H---HHHHHHHHhccCCCEEEEE
Confidence 348998854321 1 3567778889999988754
No 416
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=55.43 E-value=24 Score=34.33 Aligned_cols=85 Identities=12% Similarity=0.015 Sum_probs=50.7
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+.+|+=+|+| .|......+...+.+|+++|.++.-...+... . .. ..++++. . ..+|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----------G---~~--v~~l~ea--l-~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----------G---FR--VMTMEEA--A-ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----------C---CE--ecCHHHH--H-hCCCEEE
Confidence 56789999998 45555545555677999999887644333221 0 11 1122222 1 2589988
Q ss_pred echhhhhcChhhHHHHHH-HHHHhcccCcEEEE
Q 024100 236 VQWCIGHLTDDDFVSFFK-RAKENIARSGTFLL 267 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~-~~~r~LkpgG~liv 267 (272)
..-. .. .++. ...+.+++|++++.
T Consensus 273 ~aTG-----~~---~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 273 TATG-----NK---DVITAEHMEAMKDGAILAN 297 (425)
T ss_pred ECCC-----CH---HHHHHHHHhcCCCCCEEEE
Confidence 6432 12 3454 56788899998865
No 417
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.40 E-value=1.2e+02 Score=27.54 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=52.3
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC---CCCCCCCCc
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL---QDFTPETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~ 230 (272)
.++.+||-.|+| .|..+..++...+. .|.+++.++.-.+.+++ +.. ...+.....++ .... ..+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~~~~~~-~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK-MGA--------DVVINPREEDVVEVKSVT-DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCc--------ceeeCcccccHHHHHHHc-CCCC
Confidence 345667766765 36677767544555 68888777766666654 210 00111111111 1111 2246
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+|+.+-. .. ..+..+.+.|+++|.++..
T Consensus 232 vd~vld~~g------~~--~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 232 VDVVLEMSG------NP--KAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCEEEECCC------CH--HHHHHHHHHhccCCEEEEE
Confidence 899885432 11 3566677889999988764
No 418
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=55.20 E-value=18 Score=28.91 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=42.7
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.++|=+|+| .|+.....|...+ .+++++.-+.+-.+...+.+. ...+.+. +++++......+|+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~---------~~~~~~~--~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG---------GVNIEAI--PLEDLEEALQEADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT---------GCSEEEE--EGGGHCHHHHTESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC---------cccccee--eHHHHHHHHhhCCeE
Confidence 45699999987 4554444444554 459999877654444434331 1234444 444443112479999
Q ss_pred Eechhhhh
Q 024100 235 WVQWCIGH 242 (272)
Q Consensus 235 vs~~vl~h 242 (272)
++.-...+
T Consensus 80 I~aT~~~~ 87 (135)
T PF01488_consen 80 INATPSGM 87 (135)
T ss_dssp EE-SSTTS
T ss_pred EEecCCCC
Confidence 97765544
No 419
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=54.93 E-value=72 Score=29.58 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=55.3
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe--CCCC-C-CCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~--d~~~-~-~~~~ 228 (272)
..++.+||=.|+| .|..+..++...+. .|.+++.++.-++.+++ +.. ...++.... ++.+ + ....
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-lGa--------~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-FGA--------TDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC--------CEEEcccccchHHHHHHHHHhC
Confidence 4567788888865 56666666544565 69999999988888864 321 111211111 1110 0 0112
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
+.+|+|+-.-. + + ..+....+.|+++ |.++..
T Consensus 255 ~g~d~vid~~g--~---~---~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 255 GGVDYTFECIG--N---V---KVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCCcEEEECCC--C---h---HHHHHHHHhhccCCCeEEEE
Confidence 36888875322 1 1 3666677888887 887753
No 420
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=54.51 E-value=1.3e+02 Score=27.73 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=55.7
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe---CC----CCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---PL----QDFT 225 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~---d~----~~~~ 225 (272)
..++.+||-.|+| .|..+..++...+.. |.+++.++...+.+++ +.. ..++.. ++ ..+.
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~-----------~~vv~~~~~~~~~~l~~~~ 247 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGA-----------THTVNASEDDAVEAVRDLT 247 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCC-----------eEEeCCCCccHHHHHHHHc
Confidence 4556788888875 577777676555665 8899888887777753 311 111111 11 1111
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+...+|+|+.... .. ..+..+.+.|+++|.++..
T Consensus 248 -~~~~vd~vld~~~------~~--~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 248 -DGRGADYAFEAVG------RA--ATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred -CCCCCCEEEEcCC------Ch--HHHHHHHHHhhcCCeEEEE
Confidence 1246898874332 11 4567778889999988754
No 421
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=54.18 E-value=1.3e+02 Score=26.21 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=54.9
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCC
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~ 228 (272)
..++..||-.|| +.|..+..++...+..|.+++.++...+.+++ +.. ...+.....++ .... ..
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~~i~~~~-~~ 206 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA-LGA--------DHVIDYRDPDLRERVKALT-GG 206 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH-cCC--------ceeeecCCccHHHHHHHHc-CC
Confidence 446678999997 47777777765667789999988887777754 210 00111111111 0111 12
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..+|+++.+..- ..+..+.+.++++|.++.
T Consensus 207 ~~~d~v~~~~g~---------~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 207 RGVDVVYDPVGG---------DVFEASLRSLAWGGRLLV 236 (323)
T ss_pred CCcEEEEECccH---------HHHHHHHHhhccCCEEEE
Confidence 358888754321 234456678888998764
No 422
>PRK05875 short chain dehydrogenase; Provisional
Probab=54.07 E-value=1.2e+02 Score=26.51 Aligned_cols=76 Identities=20% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--------
Q 024100 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------- 227 (272)
Q Consensus 158 ~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-------- 227 (272)
..++|=.|+ |.|......+.+.+.+|.+++-++.-++...+.+... ....++.++.+|+.+....
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEAL-----KGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-----cCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 357888885 4554444334566779999987766555444443211 0124678888888654210
Q ss_pred --CCcceeeEech
Q 024100 228 --TGRYDVIWVQW 238 (272)
Q Consensus 228 --~~~fDlIvs~~ 238 (272)
.+..|+|+.+.
T Consensus 82 ~~~~~~d~li~~a 94 (276)
T PRK05875 82 AWHGRLHGVVHCA 94 (276)
T ss_pred HHcCCCCEEEECC
Confidence 12578888654
No 423
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.01 E-value=37 Score=30.63 Aligned_cols=90 Identities=10% Similarity=0.100 Sum_probs=56.5
Q ss_pred eeeEeecccchHHHHHHHhc-CC----------cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---
Q 024100 160 VALDCGSGIGRITKNLLIRY-FN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~-~~----------~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--- 225 (272)
+|+|+.+.+|.++.-| ++. +. .+++||.-+ +. ..+.|.-+++|+....
T Consensus 44 rvVDLCAAPGSWSQvl-SrkL~~~~~~~~~~~~kIVaVDLQ~--------Ma---------PI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 44 RVVDLCAAPGSWSQVL-SRKLYKPLPSSGERDKKIVAVDLQP--------MA---------PIEGVIQLQGDITSASTAE 105 (294)
T ss_pred HHhhhhcCCCcHHHHH-HHHHhccCCCcchhhccEEEEeccc--------CC---------ccCceEEeecccCCHhHHH
Confidence 8999999999999965 443 32 155665322 11 1235666677775432
Q ss_pred -----CCCCcceeeEechh-----hhhcCh----hhHHHHHHHHHHhcccCcEEEE
Q 024100 226 -----PETGRYDVIWVQWC-----IGHLTD----DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 226 -----~~~~~fDlIvs~~v-----l~hl~d----~~~~~~l~~~~r~LkpgG~liv 267 (272)
+...+.|+|+|-.+ +|.+.+ .-+..+|+-...+|+|||.|+-
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 23358999998553 555432 1234566666789999999863
No 424
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=53.44 E-value=18 Score=30.31 Aligned_cols=38 Identities=18% Similarity=0.045 Sum_probs=27.3
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHH
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLD 194 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld 194 (272)
.+.+|.=+|+| +|+-...++...+.+|.++|++...-+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 35588888887 566555565667889999998887554
No 425
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.11 E-value=1.6e+02 Score=25.87 Aligned_cols=88 Identities=19% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+||=.|+ +.|..+..++...+.++.+++.+++-.+.+++ +.. .. .+. +..++. ++.+|++
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~---------~~-~~~--~~~~~~--~~~~d~v 196 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE-LGA---------AE-VVV--GGSELS--GAPVDLV 196 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC---------cE-EEe--cccccc--CCCceEE
Confidence 3667887776 57777777765567789999888888888866 421 11 111 111221 2468998
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..-. . ..+....+.|+++|.++..
T Consensus 197 l~~~g--~-------~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 197 VDSVG--G-------PQLARALELLAPGGTVVSV 221 (305)
T ss_pred EECCC--c-------HHHHHHHHHhcCCCEEEEE
Confidence 85421 1 2456678889999988754
No 426
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=52.93 E-value=42 Score=24.48 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHHHHhc
Q 024100 244 TDDDFVSFFKRAKENI 259 (272)
Q Consensus 244 ~d~~~~~~l~~~~r~L 259 (272)
++.+..+..+++..+|
T Consensus 74 ~~~d~~~i~~~I~~~~ 89 (89)
T cd05566 74 TGIGEDKVYEEILEAL 89 (89)
T ss_pred ccCChHHHHHHHHHhC
Confidence 4445556666655543
No 427
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.65 E-value=1.6e+02 Score=26.65 Aligned_cols=92 Identities=15% Similarity=0.059 Sum_probs=53.7
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC---C-CCCC
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---F-TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~---~-~~~~ 228 (272)
+.++.+||=.|+ +.|..+..++...+.++.+++.+. ..+.+++ +. . . .+...+-.. . ....
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~-~g---------~-~-~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA-LG---------A-D-TVILRDAPLLADAKALGG 241 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh-cC---------C-e-EEEeCCCccHHHHHhhCC
Confidence 456778888886 577777777655677888887554 5666643 21 1 1 111111000 0 0122
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+|+|+.... + ..+..+.+.|+++|.++..
T Consensus 242 ~~~d~vi~~~g--~-------~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 242 EPVDVVADVVG--G-------PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCcEEEecCC--H-------HHHHHHHHHhccCCEEEEe
Confidence 46999885432 1 2456677899999988753
No 428
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=52.13 E-value=1e+02 Score=28.05 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=52.5
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.++|=.||| .|..+..++...+.++.+++.+++..+.+++ +.. ...+.....+.. ....+.+|+|
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~--------~~vi~~~~~~~~--~~~~~~~d~v 236 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK-LGA--------DEFIATKDPEAM--KKAAGSLDLI 236 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC--------cEEecCcchhhh--hhccCCceEE
Confidence 445566657763 5666666654556788999988888888754 311 000111111110 0012468888
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+....- . ..+..+.+.|+++|.++..
T Consensus 237 ~~~~g~-----~---~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 237 IDTVSA-----S---HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred EECCCC-----c---chHHHHHHHhcCCCEEEEE
Confidence 843221 1 2356667888899988754
No 429
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=51.51 E-value=34 Score=33.88 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=49.7
Q ss_pred CCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+.+|+=+|+|. |+.....+...+.+|+++|.++.-...+.. . ... ..++++. -...|+|+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-~------------G~~--~~~leel---l~~ADIVI 314 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-E------------GYQ--VVTLEDV---VETADIFV 314 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-c------------Cce--eccHHHH---HhcCCEEE
Confidence 567899999884 555444544557799999877654333322 1 111 1223222 13689988
Q ss_pred echhhhhcChhhHHHHH-HHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFF-KRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l-~~~~r~LkpgG~liv~ 268 (272)
+.-.- . .++ .+....+|||++++..
T Consensus 315 ~atGt-----~---~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 315 TATGN-----K---DIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ECCCc-----c---cccCHHHHhccCCCcEEEEc
Confidence 75321 1 233 3567778999988753
No 430
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.49 E-value=1.3e+02 Score=26.24 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=42.7
Q ss_pred CCeeeEeec----ccchHHHHHHHhcCCcEEEEeCC--HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----
Q 024100 158 HLVALDCGS----GIGRITKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (272)
Q Consensus 158 ~~~VLDiGc----GtG~~t~~LLa~~~~~v~~vD~S--~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----- 226 (272)
+.++|=.|+ |.|.-....+++.+.+|.+++.+ ++.++...+.+. ..+.++.+|+.+...
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP----------EPAPVLELDVTNEEHLASLA 76 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC----------CCCcEEeCCCCCHHHHHHHH
Confidence 347888887 55544443445678899888754 334444433331 245677788865421
Q ss_pred -----CCCcceeeEechhh
Q 024100 227 -----ETGRYDVIWVQWCI 240 (272)
Q Consensus 227 -----~~~~fDlIvs~~vl 240 (272)
.-++.|+++.+..+
T Consensus 77 ~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHcCCCcEEEEcccc
Confidence 11478998876543
No 431
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=51.41 E-value=44 Score=29.17 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=37.4
Q ss_pred cccchHHHHHHH---hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CC-CcceeeEechh
Q 024100 166 SGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ET-GRYDVIWVQWC 239 (272)
Q Consensus 166 cGtG~~t~~LLa---~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~-~~fDlIvs~~v 239 (272)
|-+|..+..++. +++.+|++|--+ .++-.. ...++..+.|+.+... .+ ..||+|++.+-
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn-----~~K~~~----------~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRN-----ASKLAA----------RQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeC-----hHhccc----------cccceeecccccChhhhHhhhcCCceEEEecc
Confidence 446766666653 468899999322 222111 1467788888876643 11 47999998776
Q ss_pred h
Q 024100 240 I 240 (272)
Q Consensus 240 l 240 (272)
.
T Consensus 72 ~ 72 (211)
T COG2910 72 A 72 (211)
T ss_pred C
Confidence 5
No 432
>PRK06500 short chain dehydrogenase; Provisional
Probab=51.35 E-value=1.5e+02 Score=25.14 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=40.6
Q ss_pred CeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----------
Q 024100 159 LVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---------- 226 (272)
Q Consensus 159 ~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---------- 226 (272)
.++|=.|++ .|......+++.+.+|.+++.++.-++...+.+ ..++.++.+|+.+...
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL----------GESALVIRADAGDVAAQKALAQALAE 76 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh----------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 366767753 444333333466778999987776555554443 1246677788765321
Q ss_pred CCCcceeeEech
Q 024100 227 ETGRYDVIWVQW 238 (272)
Q Consensus 227 ~~~~fDlIvs~~ 238 (272)
..++.|+|+.+-
T Consensus 77 ~~~~id~vi~~a 88 (249)
T PRK06500 77 AFGRLDAVFINA 88 (249)
T ss_pred HhCCCCEEEECC
Confidence 013578888543
No 433
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=51.28 E-value=55 Score=29.80 Aligned_cols=88 Identities=11% Similarity=0.143 Sum_probs=50.6
Q ss_pred eeEeeccc--chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 161 ALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 161 VLDiGcGt--G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
|-=||+|. +.++..| .+.+.+|.+.|.+++-++...+.-. . . ..+..++.......|+|++.-
T Consensus 3 Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~~~l~~~g~-----------~-~--~~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAVKAMKEDRT-----------T-G--VANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred EEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHcCC-----------c-c--cCCHHHHHhhcCCCCEEEEEc
Confidence 44567764 2345545 4667799999999987776654210 0 0 011111110112468887652
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.....++.++...|++|-.+++.
T Consensus 68 -----p~~~~~~v~~~l~~~l~~g~ivid~ 92 (298)
T TIGR00872 68 -----PHGIVDAVLEELAPTLEKGDIVIDG 92 (298)
T ss_pred -----CchHHHHHHHHHHhhCCCCCEEEEC
Confidence 2334557788888888888777653
No 434
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=51.25 E-value=87 Score=29.00 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=54.1
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC------CCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP------LQDFTP 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d------~~~~~~ 226 (272)
+.++.+||=+|+| .|..+..++...+. .|++++.++.-++.+++ +.. ...++....+ +.+..
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~-~ga--------~~~i~~~~~~~~~~~~~~~~~- 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE-FGA--------TDFINPKDSDKPVSEVIREMT- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC--------CcEeccccccchHHHHHHHHh-
Confidence 4567788888875 45555656444455 68999999888888864 321 1111111100 01111
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
. +.+|+|+-.-. + . ..+....+.|+++ |.++..
T Consensus 252 ~-~g~d~vid~~g--~----~--~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 252 G-GGVDYSFECTG--N----A--DLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred C-CCCCEEEECCC--C----h--HHHHHHHHhcccCCCEEEEE
Confidence 1 35898874322 1 1 3566677788885 888653
No 435
>PLN02494 adenosylhomocysteinase
Probab=51.21 E-value=30 Score=34.24 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=50.9
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+.+|+=+|+| .|......+...+.+|.++|.++.-...|... . ..+ .++++. - ...|+|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----------G---~~v--v~leEa--l-~~ADVVI 314 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----------G---YQV--LTLEDV--V-SEADIFV 314 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----------C---Cee--ccHHHH--H-hhCCEEE
Confidence 46789999988 56555555445577999999887543333321 0 111 122221 1 2579888
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..-.-.| -+..+..+.+++||+++..
T Consensus 315 ~tTGt~~-------vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 315 TTTGNKD-------IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred ECCCCcc-------chHHHHHhcCCCCCEEEEc
Confidence 6332222 2235567789999988743
No 436
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=50.79 E-value=1.3e+02 Score=27.27 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=52.4
Q ss_pred eeeEeecc-cc-hHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCC-CCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 160 VALDCGSG-IG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP-DMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 160 ~VLDiGcG-tG-~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+|.=+|+| .| .++..| ++.+.+|.+++.++..++..++.......... .....+.+ ..+..+. ....|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA---LADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH---HhCCCEEEE
Confidence 45566776 23 333333 56677899999998887766653110000000 00001111 1122111 135788886
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.--- .....++..+...++++..++..
T Consensus 78 ~v~~-----~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 78 AVPS-----QALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred eCCH-----HHHHHHHHHHHhhcCCCCEEEEE
Confidence 5443 23557888888888888776654
No 437
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=50.55 E-value=2.2e+02 Score=26.91 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=33.4
Q ss_pred CCCCCeeeEee-cc-cchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhc
Q 024100 155 NNQHLVALDCG-SG-IGRITKNLLIRYF---NEVDLLEPVSHFLDAARESL 200 (272)
Q Consensus 155 ~~~~~~VLDiG-cG-tG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l 200 (272)
..++.+||=+| +| .|..+..++...+ .+|.++|.++.-++.+++.+
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~ 223 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLF 223 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhc
Confidence 45667888887 34 7888777753332 27999999999999998753
No 438
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=50.11 E-value=27 Score=30.11 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCeeeEeecc-cchHHHHHHHhc-CCcEEEEeCC
Q 024100 158 HLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPV 189 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~-~~~v~~vD~S 189 (272)
..+||=+||| .|......|+.. ..+++++|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4589999998 566555455565 4689999866
No 439
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=50.07 E-value=1.3e+02 Score=26.08 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=52.5
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCc
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~ 230 (272)
..++.+||=.|+ +.|..+..++...+.++.+++.++ ..+.+++ +.. ..++...-.++ ......
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~-~g~-----------~~~~~~~~~~~~~~~~~~~ 208 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS-LGA-----------DEVIDYTKGDFERAAAPGG 208 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH-cCC-----------CEEEeCCCCchhhccCCCC
Confidence 345668887775 467777767655677888887666 5666633 310 11111111111 122246
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++.+.. . ..+..+.+.|+++|.++..
T Consensus 209 ~d~v~~~~~-----~----~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 209 VDAVLDTVG-----G----ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred ceEEEECCc-----h----HHHHHHHHHHhcCcEEEEE
Confidence 898885322 1 2556667788999988753
No 440
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=49.78 E-value=1.7e+02 Score=25.16 Aligned_cols=74 Identities=18% Similarity=0.067 Sum_probs=43.0
Q ss_pred CeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----------
Q 024100 159 LVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---------- 226 (272)
Q Consensus 159 ~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---------- 226 (272)
.++|=.|++ .|......+++.+.+|.+++-++.-++...+.+.. ....+.++.+|+.+...
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQ-------EGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh-------cCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 467777754 33333333346678999998777666655554422 12356677788765421
Q ss_pred CCCcceeeEechh
Q 024100 227 ETGRYDVIWVQWC 239 (272)
Q Consensus 227 ~~~~fDlIvs~~v 239 (272)
.-+.+|+|+.+..
T Consensus 83 ~~~~id~vi~~ag 95 (254)
T PRK08085 83 DIGPIDVLINNAG 95 (254)
T ss_pred hcCCCCEEEECCC
Confidence 0135899887553
No 441
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=49.41 E-value=12 Score=35.66 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=52.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHH-------HhccccCCCCCCCCCceEEEEeCCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR-------ESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~-------~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~ 227 (272)
..++..|.|-=.|||.+.... +..+.-|.|.|++-.|+...+ .++...+ ....-+....+|+...+.-
T Consensus 206 v~pGdivyDPFVGTGslLvsa-a~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg----~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSA-AHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG----SSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred cCCCCEEecCccccCceeeeh-hhhcceeeccccchheeecccCCCcchhHhHHHhC----CcchhhheeeecccCcchh
Confidence 457789999999999998866 688999999999988877432 2222111 1123355666777654332
Q ss_pred -CCcceeeEe
Q 024100 228 -TGRYDVIWV 236 (272)
Q Consensus 228 -~~~fDlIvs 236 (272)
...||+|+|
T Consensus 281 sn~~fDaIvc 290 (421)
T KOG2671|consen 281 SNLKFDAIVC 290 (421)
T ss_pred hcceeeEEEe
Confidence 348999996
No 442
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.24 E-value=65 Score=31.63 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=42.5
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|+=+|.| +|..+..+|...+..|++.|..+..++.+++ . .+.++..+...-.. ..+|+|+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~-~------------g~~~~~~~~~~~~l--~~~D~VV 75 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAE-R------------GVATVSTSDAVQQI--ADYALVV 75 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHh-C------------CCEEEcCcchHhHh--hcCCEEE
Confidence 45689999988 6666666677788899999977665443322 1 23444332211011 2589999
Q ss_pred echhh
Q 024100 236 VQWCI 240 (272)
Q Consensus 236 s~~vl 240 (272)
.+-.+
T Consensus 76 ~SpGi 80 (488)
T PRK03369 76 TSPGF 80 (488)
T ss_pred ECCCC
Confidence 77665
No 443
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=49.20 E-value=68 Score=30.11 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCeeeEeecc-cchHHHHHHHhc-CCcEEEEeCC
Q 024100 158 HLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPV 189 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~-~~~v~~vD~S 189 (272)
..+||=+||| .|......|+.. ..+++++|.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4589999999 565554444555 4589999965
No 444
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=49.17 E-value=1.1e+02 Score=26.68 Aligned_cols=30 Identities=20% Similarity=-0.027 Sum_probs=18.6
Q ss_pred CCeeeEeec----ccchHHHHHHHhcCCcEEEEe
Q 024100 158 HLVALDCGS----GIGRITKNLLIRYFNEVDLLE 187 (272)
Q Consensus 158 ~~~VLDiGc----GtG~~t~~LLa~~~~~v~~vD 187 (272)
+.++|=.|+ |.|.-...-+++.+.+|.++.
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~ 39 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITY 39 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence 347888886 455444433456677887764
No 445
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.12 E-value=1.8e+02 Score=25.37 Aligned_cols=72 Identities=8% Similarity=-0.080 Sum_probs=41.3
Q ss_pred CCeeeEeec----ccchHHHHHHHhcCCcEEEEeCC---HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----
Q 024100 158 HLVALDCGS----GIGRITKNLLIRYFNEVDLLEPV---SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---- 226 (272)
Q Consensus 158 ~~~VLDiGc----GtG~~t~~LLa~~~~~v~~vD~S---~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---- 226 (272)
+.++|=.|+ |.|.-....+++.+.+|.+++.+ +.-++...+.+. ..++.++.+|+.+..-
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE---------GQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC---------CCceEEEecCCCCHHHHHHH
Confidence 347888886 56655444445778888888543 233333333321 2356677888865421
Q ss_pred ------CCCcceeeEech
Q 024100 227 ------ETGRYDVIWVQW 238 (272)
Q Consensus 227 ------~~~~fDlIvs~~ 238 (272)
.-++.|+++.+-
T Consensus 78 ~~~~~~~~g~ld~lv~na 95 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCI 95 (257)
T ss_pred HHHHHHhCCCccEEEECc
Confidence 114689888653
No 446
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=49.09 E-value=87 Score=29.70 Aligned_cols=102 Identities=11% Similarity=-0.012 Sum_probs=55.0
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE-eCC----CCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPL----QDFTPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~-~d~----~~~~~~ 227 (272)
..++.+||=.|+| .|..+..++...+.. +.++|.++.-++.|++. . ...+.... .++ .+.. .
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-G---------a~~v~~~~~~~~~~~v~~~~-~ 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-G---------CETVDLSKDATLPEQIEQIL-G 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-C---------CeEEecCCcccHHHHHHHHc-C
Confidence 4456677667775 566666564444555 45567888788888763 1 11111111 111 1111 1
Q ss_pred CCcceeeEechhhh------hcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 228 TGRYDVIWVQWCIG------HLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 228 ~~~fDlIvs~~vl~------hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
...+|+|+-.-.-. .....+....+++..+.+++||.++.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 23589888432210 00001212478888999999999875
No 447
>PRK07831 short chain dehydrogenase; Provisional
Probab=48.49 E-value=95 Score=26.96 Aligned_cols=77 Identities=19% Similarity=0.107 Sum_probs=47.8
Q ss_pred CCeeeEeec---ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--------
Q 024100 158 HLVALDCGS---GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (272)
Q Consensus 158 ~~~VLDiGc---GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-------- 226 (272)
+.++|=.|+ |.|......++..+.+|.+++.++.-++...+.+... ....++.++.+|+.+...
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAE-----LGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-----cCCceEEEEEccCCCHHHHHHHHHHH
Confidence 457777774 4666555555677888999998877666665554210 012357788888865320
Q ss_pred --CCCcceeeEechh
Q 024100 227 --ETGRYDVIWVQWC 239 (272)
Q Consensus 227 --~~~~fDlIvs~~v 239 (272)
.-+..|+++.+..
T Consensus 92 ~~~~g~id~li~~ag 106 (262)
T PRK07831 92 VERLGRLDVLVNNAG 106 (262)
T ss_pred HHHcCCCCEEEECCC
Confidence 0136798886654
No 448
>PRK05854 short chain dehydrogenase; Provisional
Probab=48.49 E-value=1.7e+02 Score=26.60 Aligned_cols=77 Identities=14% Similarity=-0.017 Sum_probs=45.8
Q ss_pred CCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---------
Q 024100 158 HLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (272)
Q Consensus 158 ~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 226 (272)
+.++|=.|++ .|..+...|++.+.+|.++.-++.-.+.+.+.+... .....+.++.+|+.+...
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~-----~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA-----VPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3467766754 444333334567889999987776665555544211 112357888899866431
Q ss_pred -CCCcceeeEechh
Q 024100 227 -ETGRYDVIWVQWC 239 (272)
Q Consensus 227 -~~~~fDlIvs~~v 239 (272)
..++.|++|.+-.
T Consensus 89 ~~~~~iD~li~nAG 102 (313)
T PRK05854 89 AEGRPIHLLINNAG 102 (313)
T ss_pred HhCCCccEEEECCc
Confidence 1136899886643
No 449
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.17 E-value=1.5e+02 Score=26.28 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=41.5
Q ss_pred CCeeeEeec----ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-------
Q 024100 158 HLVALDCGS----GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (272)
Q Consensus 158 ~~~VLDiGc----GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------- 226 (272)
...+|=.|+ |.|+-....|++.+.+|.+++-+....+..++.... . ....++.+|+.+..-
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~-g~~~~~~~Dv~d~~~v~~~~~~ 78 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAES-------L-GSDFVLPCDVEDIASVDAVFEA 78 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHh-------c-CCceEEeCCCCCHHHHHHHHHH
Confidence 346888886 566555545567888999887654333322222111 0 112356778865421
Q ss_pred ---CCCcceeeEechhh
Q 024100 227 ---ETGRYDVIWVQWCI 240 (272)
Q Consensus 227 ---~~~~fDlIvs~~vl 240 (272)
.-++.|++|.+-.+
T Consensus 79 ~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 79 LEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHhCCCCEEEECCcc
Confidence 11478998866443
No 450
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=47.96 E-value=1.5e+02 Score=27.12 Aligned_cols=100 Identities=8% Similarity=0.082 Sum_probs=52.5
Q ss_pred eeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC-CCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+|.=+||| .|......|++.+.+|.+++.+++.++.-++.-...... ......++.+. .|..+. ..+.+|+|+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~--~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV--LSDNATCIILA 78 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH--HhCCCCEEEEE
Confidence 45667887 444333344677889999998887766555421100000 00001122221 222111 01357887754
Q ss_pred hhhhhcChhhHHHHHHHHHH-hcccCcEEEE
Q 024100 238 WCIGHLTDDDFVSFFKRAKE-NIARSGTFLL 267 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r-~LkpgG~liv 267 (272)
-- +.++..+++++.. .+.++..++.
T Consensus 79 vk-----s~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 79 VP-----TQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred eC-----HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 32 3445678888887 7887765543
No 451
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=47.93 E-value=53 Score=30.03 Aligned_cols=90 Identities=12% Similarity=-0.036 Sum_probs=49.3
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+.+|+=+|+| .|......+...+.+|.+++.++.-.+.+.+. ....+. ..++.+. -..+|+|+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~----------g~~~~~--~~~l~~~---l~~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEM----------GLIPFP--LNKLEEK---VAEIDIVI 214 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC----------CCeeec--HHHHHHH---hccCCEEE
Confidence 35689999987 44444444445677999999887654443221 001111 1111111 13689999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+-...-++ .+..+.++++..+++.-
T Consensus 215 nt~P~~ii~--------~~~l~~~k~~aliIDla 240 (287)
T TIGR02853 215 NTIPALVLT--------ADVLSKLPKHAVIIDLA 240 (287)
T ss_pred ECCChHHhC--------HHHHhcCCCCeEEEEeC
Confidence 765432221 22345678888887753
No 452
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=47.40 E-value=80 Score=27.67 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=41.7
Q ss_pred eeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcceee
Q 024100 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVI 234 (272)
Q Consensus 160 ~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fDlI 234 (272)
+++=+||| .|+.....|.+.+.+|.+||.+++-++..... ......+++|..+.. ..-..+|++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~-----------~~~~~~v~gd~t~~~~L~~agi~~aD~v 70 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD-----------ELDTHVVIGDATDEDVLEEAGIDDADAV 70 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh-----------hcceEEEEecCCCHHHHHhcCCCcCCEE
Confidence 45667888 34433334467788999999999877663321 124567777765432 112478988
Q ss_pred Eec
Q 024100 235 WVQ 237 (272)
Q Consensus 235 vs~ 237 (272)
++.
T Consensus 71 va~ 73 (225)
T COG0569 71 VAA 73 (225)
T ss_pred EEe
Confidence 853
No 453
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=47.37 E-value=61 Score=29.17 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=44.0
Q ss_pred eeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 160 ~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
.+|=+|+= +|.+....|...+ .|+++|+.|.+.+.-. .++.|...- ...+..+|+|+-.-
T Consensus 44 ~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk~ll~--------------~~i~F~~~~----~~~~~~~DlIID~T 104 (252)
T PF06690_consen 44 QALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLKELLN--------------ENIKFMEFR----NGLEGNPDLIIDTT 104 (252)
T ss_pred eEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHHHHhc--------------CCCceeecc----CCCCCCCCEEEECC
Confidence 78888843 4544444555556 9999999998876652 356676321 11235899999777
Q ss_pred hhhhcCh
Q 024100 239 CIGHLTD 245 (272)
Q Consensus 239 vl~hl~d 245 (272)
.|+-++.
T Consensus 105 GlGGv~~ 111 (252)
T PF06690_consen 105 GLGGVDP 111 (252)
T ss_pred CCCCCCH
Confidence 7766643
No 454
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=47.35 E-value=1.6e+02 Score=24.33 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=42.9
Q ss_pred CCCeeeEeecccch--HHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~--~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.+.+||=+|+|.=. -+..| .+.+.+|++|++ +..+...+ + ..+.+....+++-.. ..+|+|
T Consensus 12 ~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp--~~~~~l~~-l-----------~~i~~~~~~~~~~dl--~~a~lV 74 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSP--EICKEMKE-L-----------PYITWKQKTFSNDDI--KDAHLI 74 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcC--ccCHHHHh-c-----------cCcEEEecccChhcC--CCceEE
Confidence 45689999998432 23334 477889999953 22222222 2 134454444443332 368888
Q ss_pred EechhhhhcChhhHHHHHHHHHH
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKE 257 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r 257 (272)
++.- .|++....+..+.+
T Consensus 75 iaaT-----~d~e~N~~i~~~a~ 92 (157)
T PRK06719 75 YAAT-----NQHAVNMMVKQAAH 92 (157)
T ss_pred EECC-----CCHHHHHHHHHHHH
Confidence 8742 24555555555444
No 455
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=46.65 E-value=42 Score=24.52 Aligned_cols=81 Identities=9% Similarity=0.037 Sum_probs=48.9
Q ss_pred ccchHHHHHHH---hcC---CcEEEE-eCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechh
Q 024100 167 GIGRITKNLLI---RYF---NEVDLL-EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (272)
Q Consensus 167 GtG~~t~~LLa---~~~---~~v~~v-D~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~v 239 (272)
|.|+++..|+. +.+ .++..+ +.+++-++...+... +.+...+..+. - ...|+|+..--
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------------~~~~~~~~~~~--~-~~advvilav~ 70 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------------VQATADDNEEA--A-QEADVVILAVK 70 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------------TEEESEEHHHH--H-HHTSEEEE-S-
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------------cccccCChHHh--h-ccCCEEEEEEC
Confidence 56666665542 345 578855 999998888776652 22322222221 1 25788887654
Q ss_pred hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 240 IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 240 l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
- ..+..+++++ ..+.++..++..
T Consensus 71 p-----~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 71 P-----QQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp G-----GGHHHHHHHH-HHHHTTSEEEEE
T ss_pred H-----HHHHHHHHHH-hhccCCCEEEEe
Confidence 3 3455788888 777888887754
No 456
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=46.19 E-value=7.7 Score=32.31 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=31.7
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHh
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~ 199 (272)
++.+|+=+|.| .|.-+..++...+.+|+..|..+.-++..+..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcc
Confidence 45789999988 56677777777888999999998877766554
No 457
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.36 E-value=97 Score=28.79 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=55.4
Q ss_pred CCCeeeEeecccc---hHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--------
Q 024100 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (272)
Q Consensus 157 ~~~~VLDiGcGtG---~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-------- 225 (272)
.+..||==|+|.| .++.++ ++++..+.++|+++...+...+.+.. . ..+..+.+|+.+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialef-a~rg~~~vl~Din~~~~~etv~~~~~-------~-g~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEF-AKRGAKLVLWDINKQGNEETVKEIRK-------I-GEAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHH-HHhCCeEEEEeccccchHHHHHHHHh-------c-CceeEEEecCCCHHHHHHHHHH
Confidence 3457777777766 345556 57788999999988888777777632 1 26778888886542
Q ss_pred --CCCCcceeeEechh------hhhcChhhHHH
Q 024100 226 --PETGRYDVIWVQWC------IGHLTDDDFVS 250 (272)
Q Consensus 226 --~~~~~fDlIvs~~v------l~hl~d~~~~~ 250 (272)
-+-+..|++|.+-. +.+.+|+++++
T Consensus 108 Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k 140 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQK 140 (300)
T ss_pred HHHhcCCceEEEeccccccCCCccCCCHHHHHH
Confidence 12257888886543 33445555544
No 458
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=45.27 E-value=1.1e+02 Score=28.02 Aligned_cols=90 Identities=17% Similarity=-0.007 Sum_probs=54.5
Q ss_pred eeeEeecc-c-chHHHHHHHhcCCcE--EEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE-eCCCCCCCCCCcceee
Q 024100 160 VALDCGSG-I-GRITKNLLIRYFNEV--DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI 234 (272)
Q Consensus 160 ~VLDiGcG-t-G~~t~~LLa~~~~~v--~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fDlI 234 (272)
+|+=+|.| . |.+++.+ ...+..+ ++.|.+..-+..+.+. .+..-. .+.. .. .....|+|
T Consensus 5 ~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a~~l-------------gv~d~~~~~~~-~~-~~~~aD~V 68 (279)
T COG0287 5 KVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAALEL-------------GVIDELTVAGL-AE-AAAEADLV 68 (279)
T ss_pred EEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHHhhc-------------Ccccccccchh-hh-hcccCCEE
Confidence 56677776 3 3444433 5555555 6677777766666542 111111 1110 11 12468999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+.+--+.. ..++++++...|++|..+.+.=|
T Consensus 69 ivavPi~~-----~~~~l~~l~~~l~~g~iv~Dv~S 99 (279)
T COG0287 69 IVAVPIEA-----TEEVLKELAPHLKKGAIVTDVGS 99 (279)
T ss_pred EEeccHHH-----HHHHHHHhcccCCCCCEEEeccc
Confidence 98766633 55899999999999999887644
No 459
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=44.65 E-value=63 Score=33.48 Aligned_cols=105 Identities=14% Similarity=0.045 Sum_probs=62.3
Q ss_pred CCCeeeEeeccc--chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcccc-------CCCCC----CCCCceEEEEeCCCC
Q 024100 157 QHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-------NHMAP----DMHKATNFFCVPLQD 223 (272)
Q Consensus 157 ~~~~VLDiGcGt--G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~-------~~~~~----~~~~~v~~~~~d~~~ 223 (272)
+-.+|.=||+|+ ..++..+++..+..|+++|++++.++.+.+++... ..... ....++++. .|.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 345788999997 34444342266889999999999999887654321 00000 001233333 22222
Q ss_pred CCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 224 ~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+ ...|+|+=. +.+.+ +-+.++|+++.+.++|+..|.-.-
T Consensus 387 ~----~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 387 F----KHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred h----ccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence 2 357776633 33332 224489999999999998876443
No 460
>PRK06701 short chain dehydrogenase; Provisional
Probab=44.40 E-value=1.3e+02 Score=26.83 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=40.7
Q ss_pred CCeeeEeeccc--ch-HHHHHHHhcCCcEEEEeCCH-HHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC------
Q 024100 158 HLVALDCGSGI--GR-ITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (272)
Q Consensus 158 ~~~VLDiGcGt--G~-~t~~LLa~~~~~v~~vD~S~-~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~------ 227 (272)
..++|=.|++. |. ++..| ++.+.+|.+++.++ ..++...+.+.. ...++.++.+|+.+....
T Consensus 46 ~k~iLItGasggIG~~la~~l-~~~G~~V~l~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLF-AKEGADIAIVYLDEHEDANETKQRVEK-------EGVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcchHHHHHHHHHHh-------cCCeEEEEEccCCCHHHHHHHHHH
Confidence 45788888643 33 33333 46678898887553 223333333321 124577888888654210
Q ss_pred ----CCcceeeEechh
Q 024100 228 ----TGRYDVIWVQWC 239 (272)
Q Consensus 228 ----~~~fDlIvs~~v 239 (272)
-+..|+|+.+..
T Consensus 118 i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 118 TVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHcCCCCEEEECCc
Confidence 125788885543
No 461
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=44.29 E-value=2.1e+02 Score=24.64 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=41.0
Q ss_pred CCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---------
Q 024100 158 HLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (272)
Q Consensus 158 ~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 226 (272)
..++|=.|++ .|......|++.+.+|.+++.++. .+...+.+.. ....+.++.+|+.+...
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRA-------AGGEALALTADLETYAGAQAAMAAAV 79 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHh-------cCCeEEEEEEeCCCHHHHHHHHHHHH
Confidence 3467777864 344333333567789999987754 2333333321 12356778888866421
Q ss_pred -CCCcceeeEech
Q 024100 227 -ETGRYDVIWVQW 238 (272)
Q Consensus 227 -~~~~fDlIvs~~ 238 (272)
..+..|+++.+.
T Consensus 80 ~~~~~id~lv~nA 92 (260)
T PRK12823 80 EAFGRIDVLINNV 92 (260)
T ss_pred HHcCCCeEEEECC
Confidence 013689888654
No 462
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=43.99 E-value=72 Score=29.35 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=25.8
Q ss_pred CCCeeeEeecc-cchHHHHHHHhc-CCcEEEEeCCHHHHH
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLD 194 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~-~~~v~~vD~S~~mld 194 (272)
+..+|+=+|+| .|......+... ...|.+++.++.-..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~ 216 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE 216 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 56789999997 455544444443 468999998876443
No 463
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.94 E-value=2.3e+02 Score=25.11 Aligned_cols=74 Identities=9% Similarity=0.004 Sum_probs=41.2
Q ss_pred CeeeEeec----ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--------
Q 024100 159 LVALDCGS----GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (272)
Q Consensus 159 ~~VLDiGc----GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-------- 226 (272)
..+|=.|+ |.|+-....+++.+.+|.+++.++...+...+.... .... .++.+|+.+..-
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~-------~~~~-~~~~~Dv~d~~~v~~~~~~i 77 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQE-------LGSD-YVYELDVSKPEHFKSLAESL 77 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHh-------cCCc-eEEEecCCCHHHHHHHHHHH
Confidence 46777786 566544444467788999888775322222221111 0112 467788866431
Q ss_pred --CCCcceeeEechhh
Q 024100 227 --ETGRYDVIWVQWCI 240 (272)
Q Consensus 227 --~~~~fDlIvs~~vl 240 (272)
.-++.|+++.+-.+
T Consensus 78 ~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 78 KKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHcCCCCEEEECCcc
Confidence 11468998876543
No 464
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=43.67 E-value=2.4e+02 Score=25.64 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=53.5
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC----C-CCCCC
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----F-TPETG 229 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~----~-~~~~~ 229 (272)
++.+||-.|+| .|..+..++...+. .|++++.++.-.+.+++ +.. . .++...-.+ + ....+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~----------~-~~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AGA----------D-VVVNGSDPDAAKRIIKAAGG 242 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCC----------c-EEecCCCccHHHHHHHHhCC
Confidence 55678888765 55666656444555 78899988888887744 320 0 111111101 1 01112
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+.... .. ..+....+.|+++|.++..
T Consensus 243 ~~d~vid~~g------~~--~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 243 GVDAVIDFVN------NS--ATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCcEEEECCC------CH--HHHHHHHHHhhcCCeEEEE
Confidence 5888875332 11 3577778889999988864
No 465
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=43.61 E-value=62 Score=29.44 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=45.8
Q ss_pred eEeeccc--chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechh
Q 024100 162 LDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (272)
Q Consensus 162 LDiGcGt--G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~v 239 (272)
-=||+|. ..++..| .+.+.+|.+.|.+++..+.+.+. .+.. ..+.++..-.....|+|++.
T Consensus 4 g~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~~~~~~~-------------g~~~-~~s~~~~~~~~~~advVi~~-- 66 (299)
T PRK12490 4 GLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAVDVAGKL-------------GITA-RHSLEELVSKLEAPRTIWVM-- 66 (299)
T ss_pred EEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHC-------------CCee-cCCHHHHHHhCCCCCEEEEE--
Confidence 3356653 2344445 35567899999998766665431 0111 11222211000124676654
Q ss_pred hhhcChh-hHHHHHHHHHHhcccCcEEEEe
Q 024100 240 IGHLTDD-DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 240 l~hl~d~-~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++++ ....++..+...+++|-.+++.
T Consensus 67 ---vp~~~~~~~v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 67 ---VPAGEVTESVIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred ---ecCchHHHHHHHHHhccCCCCCEEEEC
Confidence 2233 4556777777778887777764
No 466
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=43.59 E-value=1.3e+02 Score=27.15 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~ 228 (272)
..++.+||=.|+| .|..+..++...+ ..+.+++.++.-.+.+++ +. ....+.....++ ..+. ..
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g--------~~~~v~~~~~~~~~~i~~~~-~~ 233 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK-LG--------ATHTVNSAKGDAIEQVLELT-DG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hC--------CCceeccccccHHHHHHHHh-CC
Confidence 3455566666654 4445555543345 578889888877777664 21 011122211111 1111 22
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..+|+|+... ... ..+..+.+.|+++|.++.
T Consensus 234 ~~~d~vld~~-----g~~---~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 234 RGVDVVIEAV-----GIP---ATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCCEEEECC-----CCH---HHHHHHHHhccCCcEEEE
Confidence 3699887432 112 356777789999998874
No 467
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=43.42 E-value=1.1e+02 Score=27.70 Aligned_cols=94 Identities=20% Similarity=0.189 Sum_probs=53.0
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCCCc
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETGR 230 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~ 230 (272)
++.+||=.|+| .|..+..++...+. .+.+++.++.-.+.+++ +.. ...+.....++ ..+. ....
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-lg~--------~~~~~~~~~~~~~~~~~~~-~~~~ 232 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK-MGA--------TRAVNVAKEDLRDVMAELG-MTEG 232 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-hCC--------cEEecCccccHHHHHHHhc-CCCC
Confidence 45567666765 36666666544555 57888888877777665 211 01111111111 1111 2246
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+|+.... .. ..+..+.+.|+++|.++..
T Consensus 233 ~d~v~d~~g------~~--~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 233 FDVGLEMSG------AP--SAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred CCEEEECCC------CH--HHHHHHHHHHhcCCEEEEE
Confidence 888876322 12 4667778899999988765
No 468
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=43.14 E-value=90 Score=26.98 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=39.4
Q ss_pred CCeeeEeecccc-hHHHHHHHhcCCcEEEEeCC--HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 158 HLVALDCGSGIG-RITKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 158 ~~~VLDiGcGtG-~~t~~LLa~~~~~v~~vD~S--~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.+||=+|.|.= .--...|.+.+..|+++++. +...+.+. ..++.++..+...-.. ..+|+|
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~-------------~~~i~~~~~~~~~~dl--~~~~lV 73 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAE-------------QGGITWLARCFDADIL--EGAFLV 73 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHH-------------cCCEEEEeCCCCHHHh--CCcEEE
Confidence 458999999853 22222335778899999754 33322221 1267888777653332 368888
Q ss_pred Eec
Q 024100 235 WVQ 237 (272)
Q Consensus 235 vs~ 237 (272)
++.
T Consensus 74 i~a 76 (205)
T TIGR01470 74 IAA 76 (205)
T ss_pred EEC
Confidence 765
No 469
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=42.98 E-value=98 Score=27.88 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
...+||=+|+| .|+.....|...+ .+|++++-+.+-.+...+.+.. ...+.+ ..+..+ ....+|+|
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~--------~~~~~~-~~~~~~---~~~~~Div 189 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA--------LGKAEL-DLELQE---ELADFDLI 189 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh--------ccceee-cccchh---ccccCCEE
Confidence 34588999986 4444444444555 7899999887655555444421 011233 112111 11468999
Q ss_pred Eechhhhh
Q 024100 235 WVQWCIGH 242 (272)
Q Consensus 235 vs~~vl~h 242 (272)
++.-....
T Consensus 190 InaTp~g~ 197 (278)
T PRK00258 190 INATSAGM 197 (278)
T ss_pred EECCcCCC
Confidence 97766544
No 470
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=42.80 E-value=2.4e+02 Score=24.90 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=54.7
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCC
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~ 228 (272)
..++.++|=.|+ |.|..+..++...+.++.+++.++.-.+.++. +. ....+.....+. .... ..
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~-~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE-LG--------ADYVIDYRKEDFVREVRELT-GK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC--------CCeEEecCChHHHHHHHHHh-CC
Confidence 345667887776 46777777766667889999888877766643 21 000111100000 0011 12
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+|+++.+..- ..+..+.+.|+++|.++..
T Consensus 234 ~~~d~~i~~~g~---------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVGA---------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCcH---------HHHHHHHHHhhcCCEEEEE
Confidence 368988865331 2355566788999988754
No 471
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=42.75 E-value=68 Score=31.51 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
..+|+=+|=| +|.-+..+|.+.+..|++.|.++.........+ ....+.+.++....+ ....+|+|+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~---------~~~~i~~~~g~~~~~--~~~~~d~vV~ 75 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPL---------LLEGIEVELGSHDDE--DLAEFDLVVK 75 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhh---------hccCceeecCccchh--ccccCCEEEE
Confidence 5689999966 888888888888999999997766522222211 234667777655442 2357999997
Q ss_pred chhh
Q 024100 237 QWCI 240 (272)
Q Consensus 237 ~~vl 240 (272)
+-.+
T Consensus 76 SPGi 79 (448)
T COG0771 76 SPGI 79 (448)
T ss_pred CCCC
Confidence 7554
No 472
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.60 E-value=1.6e+02 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=29.7
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHH
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~ 197 (272)
..++.+||-.|| +.|..+..++...+.++.+++.+ ...+.++
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~ 184 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR 184 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH
Confidence 346678999997 47778877765567788888754 5556553
No 473
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=42.59 E-value=1.6e+02 Score=27.42 Aligned_cols=97 Identities=15% Similarity=0.050 Sum_probs=53.7
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe---C----CCCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---P----LQDFT 225 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~---d----~~~~~ 225 (272)
..++.+||=.|+| .|..+..++...+. .|.+++.++.-.+.+++ +.. ...+..... + +.++.
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~-~g~--------~~~v~~~~~~~~~~~~~v~~~~ 271 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE-MGA--------DYVFNPTKMRDCLSGEKVMEVT 271 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cCC--------CEEEcccccccccHHHHHHHhc
Confidence 4456677776765 44455555444565 68899888876666655 211 111111111 1 11222
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.... ... ..+..+.+.|+++|.++..
T Consensus 272 -~g~gvDvvld~~g-----~~~--~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 -KGWGADIQVEAAG-----APP--ATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred -CCCCCCEEEECCC-----CcH--HHHHHHHHHHHcCCEEEEE
Confidence 2236898885422 222 4677778889999998753
No 474
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=42.28 E-value=49 Score=25.43 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=40.1
Q ss_pred eecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhc
Q 024100 164 CGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL 243 (272)
Q Consensus 164 iGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl 243 (272)
+-||.|..|. ++++. |-+.++++ .-.+++......+++-.-..||+|+..-=+
T Consensus 5 l~C~~GaSSs-~la~k------------m~~~a~~~-----------gi~~~i~a~~~~e~~~~~~~~Dvill~PQv--- 57 (99)
T cd05565 5 VLCAGGGTSG-LLANA------------LNKGAKER-----------GVPLEAAAGAYGSHYDMIPDYDLVILAPQM--- 57 (99)
T ss_pred EECCCCCCHH-HHHHH------------HHHHHHHC-----------CCcEEEEEeeHHHHHHhccCCCEEEEcChH---
Confidence 5678885555 54332 45555442 235777787777664333579988865433
Q ss_pred ChhhHHHHHHHHHHhcccCcE
Q 024100 244 TDDDFVSFFKRAKENIARSGT 264 (272)
Q Consensus 244 ~d~~~~~~l~~~~r~LkpgG~ 264 (272)
.-.+.++.+.+.+-|.
T Consensus 58 -----~~~~~~i~~~~~~~~i 73 (99)
T cd05565 58 -----ASYYDELKKDTDRLGI 73 (99)
T ss_pred -----HHHHHHHHHHhhhcCC
Confidence 2345555666666554
No 475
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=42.27 E-value=58 Score=33.97 Aligned_cols=103 Identities=11% Similarity=0.073 Sum_probs=61.3
Q ss_pred CCCeeeEeeccc-c-hHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccC-------CCCC----CCCCceEEEEeCCCC
Q 024100 157 QHLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-------HMAP----DMHKATNFFCVPLQD 223 (272)
Q Consensus 157 ~~~~VLDiGcGt-G-~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~-------~~~~----~~~~~v~~~~~d~~~ 223 (272)
+-.+|-=||+|+ | .++. +++..+..|+++|.+++.++.+.+++...- .... ....++++. .|+..
T Consensus 334 ~i~~v~ViGaG~MG~gIA~-~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 411 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQ-VSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG 411 (737)
T ss_pred cccEEEEECCCHhHHHHHH-HHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH
Confidence 335788899985 3 3344 336778999999999999998876653210 0000 001223322 23322
Q ss_pred CCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 224 ~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+ ...|+|+=. +++.+ +-+.++|+++.+.++|+..|.-.
T Consensus 412 ~----~~aDlViEA-v~E~l--~~K~~vf~~l~~~~~~~~ilasN 449 (737)
T TIGR02441 412 F----KNADMVIEA-VFEDL--SLKHKVIKEVEAVVPPHCIIASN 449 (737)
T ss_pred h----ccCCeehhh-ccccH--HHHHHHHHHHHhhCCCCcEEEEc
Confidence 2 246665522 33332 23458999999999999887654
No 476
>PRK12742 oxidoreductase; Provisional
Probab=42.27 E-value=2.1e+02 Score=24.11 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=36.7
Q ss_pred CCeeeEeec--ccchHHHHHHHhcCCcEEEEeC-CHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC------CC
Q 024100 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEP-VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ET 228 (272)
Q Consensus 158 ~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~-S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------~~ 228 (272)
..+||=.|+ |.|......+.+.+.+|.++.. +++-++...+.+ .+.++..|+.+... ..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~------------~~~~~~~D~~~~~~~~~~~~~~ 73 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET------------GATAVQTDSADRDAVIDVVRKS 73 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh------------CCeEEecCCCCHHHHHHHHHHh
Confidence 347787775 4555444444566778877643 444333332222 23456667654310 11
Q ss_pred CcceeeEechh
Q 024100 229 GRYDVIWVQWC 239 (272)
Q Consensus 229 ~~fDlIvs~~v 239 (272)
+.+|+++.+..
T Consensus 74 ~~id~li~~ag 84 (237)
T PRK12742 74 GALDILVVNAG 84 (237)
T ss_pred CCCcEEEECCC
Confidence 35898886643
No 477
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=42.23 E-value=93 Score=28.21 Aligned_cols=96 Identities=14% Similarity=0.022 Sum_probs=55.3
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE-eCCCC-C-CCCCCc
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQD-F-TPETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~-~d~~~-~-~~~~~~ 230 (272)
+.++.+||=.|+| .|..+..++...+.+++++..+++..+.+++ +.. ...+.... .++.. + ....+.
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~--------~~~i~~~~~~~~~~~~~~~~~~~ 233 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE-LGA--------VATVNASEVEDVAAAVRDLTGGG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-hCC--------CEEEccccchhHHHHHHHHhCCC
Confidence 3456677777764 5666666655567789999988888888754 321 11111111 11100 0 011126
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+|+.+-. .. ..+..+.+.|+++|.++.
T Consensus 234 ~d~vi~~~g------~~--~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 234 AHVSVDALG------IP--ETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred CCEEEEcCC------CH--HHHHHHHHHhhcCCEEEE
Confidence 898886422 12 456677888999998875
No 478
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=41.94 E-value=2.5e+02 Score=24.86 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCCeeeEeecccchHHHH-HHHhcCCcEEEE--eCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKN-LLIRYFNEVDLL--EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~-LLa~~~~~v~~v--D~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.+||=+|+|.=..-+- .|.+.+.+|++| ++++++.+.+. ...++++..+++.-+. ..+++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-------------~~~i~~~~r~~~~~dl--~g~~L 88 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-------------YGNLKLIKGNYDKEFI--KDKHL 88 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-------------CCCEEEEeCCCChHHh--CCCcE
Confidence 455899999997655431 334678899998 46666655432 2357787766654333 24777
Q ss_pred eEec
Q 024100 234 IWVQ 237 (272)
Q Consensus 234 Ivs~ 237 (272)
|++.
T Consensus 89 ViaA 92 (223)
T PRK05562 89 IVIA 92 (223)
T ss_pred EEEC
Confidence 7765
No 479
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.93 E-value=1.8e+02 Score=24.48 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=42.1
Q ss_pred eeeEeecccchHHHHH---HHhcCCcEEEE-eCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--------
Q 024100 160 VALDCGSGIGRITKNL---LIRYFNEVDLL-EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------- 227 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~L---La~~~~~v~~v-D~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-------- 227 (272)
++|=.|+ +|.++..+ +++.+.++.++ +-++.-++...+.+.. ....+.++..|+.+...-
T Consensus 7 ~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 7 VAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE-------EGGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred EEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-------cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5676664 44444443 24556788888 8776655554444421 134578889998664310
Q ss_pred --CCcceeeEechh
Q 024100 228 --TGRYDVIWVQWC 239 (272)
Q Consensus 228 --~~~fDlIvs~~v 239 (272)
-+.+|+|+.+..
T Consensus 79 ~~~~~id~vi~~ag 92 (247)
T PRK05565 79 EKFGKIDILVNNAG 92 (247)
T ss_pred HHhCCCCEEEECCC
Confidence 025899886543
No 480
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.87 E-value=94 Score=30.15 Aligned_cols=71 Identities=14% Similarity=0.052 Sum_probs=41.9
Q ss_pred CCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHH-HHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSH-FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~-mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+.+|+=+|+| +|.-+..+|.+.+.+|+++|.++. ......+.+. ...+.++.+.-... ...+|+|+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~---------~~gv~~~~~~~~~~---~~~~D~Vv 83 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILE---------ALGATVRLGPGPTL---PEDTDLVV 83 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHH---------HcCCEEEECCCccc---cCCCCEEE
Confidence 4579999988 565555566677889999995543 3222223332 12456655443221 13589988
Q ss_pred echhh
Q 024100 236 VQWCI 240 (272)
Q Consensus 236 s~~vl 240 (272)
.+-.+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 76554
No 481
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=41.80 E-value=2.3e+02 Score=25.46 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=53.2
Q ss_pred eeeEeecc-cc-hHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccC--CCCCCC---------CCceEEEEeCCCCCCC
Q 024100 160 VALDCGSG-IG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN--HMAPDM---------HKATNFFCVPLQDFTP 226 (272)
Q Consensus 160 ~VLDiGcG-tG-~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~--~~~~~~---------~~~v~~~~~d~~~~~~ 226 (272)
+|.=||+| .| .++..+ +..+.+|.++|.+++.++.+++.+...- ...... ...+.+ ..+.+.+
T Consensus 6 ~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~-- 81 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL-- 81 (295)
T ss_pred EEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh--
Confidence 56677888 34 444434 5667899999999998887655432100 000000 001111 2222221
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
...|+|+..-. .- ...+..+|+++...++|+..|+
T Consensus 82 --~~aD~Vieav~-e~--~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 82 --RDADFIIEAIV-ES--EDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred --CCCCEEEEcCc-cC--HHHHHHHHHHHHhhCCCCcEEE
Confidence 24677776432 00 1224478888888888887665
No 482
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.74 E-value=1.1e+02 Score=26.07 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=45.2
Q ss_pred CCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---------
Q 024100 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (272)
Q Consensus 158 ~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 226 (272)
+.++|=.|+ |.|......+.+.+..|.+++.++.-++.+.+.+.. ...++.++..|+.+...
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA-------LGTEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 347887775 455444444456677899999888766666555422 13457778888754321
Q ss_pred -CCCcceeeEech
Q 024100 227 -ETGRYDVIWVQW 238 (272)
Q Consensus 227 -~~~~fDlIvs~~ 238 (272)
..++.|+|+.+.
T Consensus 78 ~~~~~id~vi~~a 90 (253)
T PRK08217 78 EDFGQLNGLINNA 90 (253)
T ss_pred HHcCCCCEEEECC
Confidence 013579888654
No 483
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=41.74 E-value=52 Score=27.95 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=50.0
Q ss_pred eeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC------C-CCCCCceEEEEeCCCCCCCCCCcc
Q 024100 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------A-PDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 160 ~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~------~-~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+|-=+|.| .|..+...++..+.+|+++|++++-++..++-......- . .....+..+. .|.++. ....
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---IKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---HHH-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---hhcc
Confidence 44556766 454444455788899999999999888776432110000 0 0001122222 122110 1257
Q ss_pred eeeEechhh----hhcCh-hhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCI----GHLTD-DDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl----~hl~d-~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+++..--- ....| .-+.++++.+...|++ |.+++.+|
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~-~~lvV~~S 120 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP-GDLVVIES 120 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS-CEEEEESS
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh-cceEEEcc
Confidence 777743211 11111 1255888999999998 44555444
No 484
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.56 E-value=64 Score=30.50 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=34.5
Q ss_pred CCCCCeeeEee-cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcc
Q 024100 155 NNQHLVALDCG-SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 155 ~~~~~~VLDiG-cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~ 201 (272)
..++..+-=+| +|.|.++..++...+.+|++||-|..--+.|-+.+.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LG 226 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLG 226 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcC
Confidence 44555665556 458999998865568899999988766677777663
No 485
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=41.45 E-value=80 Score=25.11 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=26.8
Q ss_pred CCCeeeEeeccc-c-hHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhc
Q 024100 157 QHLVALDCGSGI-G-RITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (272)
Q Consensus 157 ~~~~VLDiGcGt-G-~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l 200 (272)
...+|+=+|||. | .+...+ .+. +..|.+++.+++-.+...+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 356899999872 2 233333 344 468999998877665544443
No 486
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=41.29 E-value=82 Score=28.66 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHh
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~ 199 (272)
...+|+=+||| .|+.....|...+ .++++++.+.+-.+...+.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~ 170 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE 170 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 34689999987 5555544444554 5899999887544444333
No 487
>PRK08267 short chain dehydrogenase; Provisional
Probab=40.95 E-value=1.1e+02 Score=26.39 Aligned_cols=71 Identities=20% Similarity=0.094 Sum_probs=44.1
Q ss_pred eeeEeeccc--chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----C-----
Q 024100 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E----- 227 (272)
Q Consensus 160 ~VLDiGcGt--G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 227 (272)
++|=.|++. |......+++.+.+|.+++.++.-++...+.+. ..++.++.+|+.+... .
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 567777643 333322334667899999988877666655442 2467888999865320 0
Q ss_pred -CCcceeeEechh
Q 024100 228 -TGRYDVIWVQWC 239 (272)
Q Consensus 228 -~~~fDlIvs~~v 239 (272)
.+++|+|+.+-.
T Consensus 74 ~~~~id~vi~~ag 86 (260)
T PRK08267 74 TGGRLDVLFNNAG 86 (260)
T ss_pred cCCCCCEEEECCC
Confidence 246799886543
No 488
>PRK05693 short chain dehydrogenase; Provisional
Probab=40.86 E-value=1.9e+02 Score=25.22 Aligned_cols=67 Identities=22% Similarity=0.143 Sum_probs=36.9
Q ss_pred eeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----------C
Q 024100 160 VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----------E 227 (272)
Q Consensus 160 ~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 227 (272)
++|=.|| |.|......+++.+.+|.+++-++.-++...+ ..+.++.+|+.+... .
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-------------~~~~~~~~Dl~~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA-------------AGFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------------CCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 4565665 33433333334567899999877765443321 124566777754321 1
Q ss_pred CCcceeeEechh
Q 024100 228 TGRYDVIWVQWC 239 (272)
Q Consensus 228 ~~~fDlIvs~~v 239 (272)
.+..|+|+.+-.
T Consensus 70 ~~~id~vi~~ag 81 (274)
T PRK05693 70 HGGLDVLINNAG 81 (274)
T ss_pred cCCCCEEEECCC
Confidence 136898886544
No 489
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=40.81 E-value=56 Score=30.64 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCH
Q 024100 158 HLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVS 190 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~ 190 (272)
..+||=+||| .|......|++.+ .+++++|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4589999999 5655555556664 5899998653
No 490
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=40.67 E-value=65 Score=27.01 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=20.5
Q ss_pred eeeEeecc-cchHHHHHHHhc-CCcEEEEeCCH
Q 024100 160 VALDCGSG-IGRITKNLLIRY-FNEVDLLEPVS 190 (272)
Q Consensus 160 ~VLDiGcG-tG~~t~~LLa~~-~~~v~~vD~S~ 190 (272)
+|+=+||| .|......|++. ..+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 37778998 566544454565 55799988553
No 491
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=40.57 E-value=2e+02 Score=26.27 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=49.6
Q ss_pred eeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCce-----EEE-EeCCCCCCCCCCcce
Q 024100 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT-----NFF-CVPLQDFTPETGRYD 232 (272)
Q Consensus 160 ~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v-----~~~-~~d~~~~~~~~~~fD 232 (272)
+|.=+|+| .|......+++.+.+|++++.++. .+..++.-... .. ...... .+. ..+. . ....+|
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~--~~-~~~~~~~~~~~~~~~~~~~---~-~~~~~D 75 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTL--TD-YRGRDVRVPPSAIAFSTDP---A-ALATAD 75 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCcee--ec-CCCcceecccceeEeccCh---h-hccCCC
Confidence 57778888 453333344677889999997653 33333211000 00 000000 011 1111 1 123689
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+..-- ..+...+++.+...++++..++..
T Consensus 76 ~vil~vk-----~~~~~~~~~~l~~~~~~~~iii~~ 106 (341)
T PRK08229 76 LVLVTVK-----SAATADAAAALAGHARPGAVVVSF 106 (341)
T ss_pred EEEEEec-----CcchHHHHHHHHhhCCCCCEEEEe
Confidence 9886543 233457788888888887766543
No 492
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=40.40 E-value=89 Score=29.19 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=33.5
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~ 198 (272)
..++.+||=.|+ +.|..+..++...+..+.+++.++.-.+.+++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 455678888886 57777776765567788889999988888876
No 493
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.40 E-value=2.8e+02 Score=25.02 Aligned_cols=41 Identities=22% Similarity=0.017 Sum_probs=27.3
Q ss_pred CCCeeeEeecccchHHHHHHH---hcCCcEEEEe-CCHHHHHHHH
Q 024100 157 QHLVALDCGSGIGRITKNLLI---RYFNEVDLLE-PVSHFLDAAR 197 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa---~~~~~v~~vD-~S~~mld~A~ 197 (272)
.+..||=.||..|.++..|.. +.+..|.++- .-+.|-+.+.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~ 50 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI 50 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH
Confidence 456899999999988776632 3466777775 2333655553
No 494
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=40.32 E-value=1.8e+02 Score=26.89 Aligned_cols=99 Identities=18% Similarity=0.130 Sum_probs=52.8
Q ss_pred eeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 160 ~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
+|+=+||| .|.+.-..|++.+..|+++--++. ++.-++. .... .....+..+...-..+-. ....+|+|+..-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~--GL~i--~~~~~~~~~~~~~~~~~~-~~~~~Dlviv~v 75 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK--GLRI--EDEGGNFTTPVVAATDAE-ALGPADLVIVTV 75 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC--CeEE--ecCCCccccccccccChh-hcCCCCEEEEEe
Confidence 57778888 455544455777767777755554 5555443 0000 000010011111111111 124799998653
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
=- -+..++++.+...+++...++...
T Consensus 76 Ka-----~q~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 76 KA-----YQLEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred cc-----ccHHHHHHHhhhcCCCCcEEEEEe
Confidence 32 224489999999999998776543
No 495
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=40.07 E-value=25 Score=34.86 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=66.6
Q ss_pred CCCCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETG 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~ 229 (272)
..+.+|||.=|++|--++..+.. ...+|++.|.++..++.-++++.. +.....+.-...|+..+.. ...
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~-----N~v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL-----NGVEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh-----cCchhhcccccchHHHHHHhcccccc
Confidence 34568999999999777777422 244778889999999988887742 1122334444555533221 124
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.||+|=.-- +..+- .||....+.++.||.+.++
T Consensus 183 ~FDvIDLDP----yGs~s--~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 183 FFDVIDLDP----YGSPS--PFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccceEecCC----CCCcc--HHHHHHHHHhhcCCEEEEE
Confidence 788874321 01133 7899999999999999875
No 496
>PRK08339 short chain dehydrogenase; Provisional
Probab=40.00 E-value=1.2e+02 Score=26.59 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=46.3
Q ss_pred CCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---------
Q 024100 158 HLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (272)
Q Consensus 158 ~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 226 (272)
+.++|=.|++ .|.-....+++.+.+|.+++.++.-++...+.+... ...++.++.+|+.+..-
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE------SNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh------cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3467777764 555444444577889999998877666666554221 12357788888865421
Q ss_pred CCCcceeeEech
Q 024100 227 ETGRYDVIWVQW 238 (272)
Q Consensus 227 ~~~~fDlIvs~~ 238 (272)
.-+..|+++.+-
T Consensus 82 ~~g~iD~lv~na 93 (263)
T PRK08339 82 NIGEPDIFFFST 93 (263)
T ss_pred hhCCCcEEEECC
Confidence 013588887654
No 497
>PLN02702 L-idonate 5-dehydrogenase
Probab=39.82 E-value=2.8e+02 Score=25.47 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=54.1
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE--EeCCCC----CC-
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQD----FT- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~--~~d~~~----~~- 225 (272)
..++.+||=.|+| .|..+..++...+. .+.+++.++.-.+.+++ +.. ...+.+. ..++.+ +.
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ-LGA--------DEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCC--------CEEEecCcccccHHHHHHHHhh
Confidence 4456678777765 46666666544454 47888888877777765 311 1111111 011111 10
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+.+|+|+-... + . ..+....+.|+++|.++..
T Consensus 250 ~~~~~~d~vid~~g--~---~---~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 250 AMGGGIDVSFDCVG--F---N---KTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hcCCCCCEEEECCC--C---H---HHHHHHHHHHhcCCEEEEE
Confidence 11236888875422 1 1 3567778899999998754
No 498
>PRK12744 short chain dehydrogenase; Provisional
Probab=39.78 E-value=2.3e+02 Score=24.36 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=49.5
Q ss_pred CeeeEeecccchHHHHH---HHhcCCcEEEEeC----CHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----
Q 024100 159 LVALDCGSGIGRITKNL---LIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~L---La~~~~~v~~vD~----S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----- 226 (272)
.++|=.|++.| ++..+ +.+.+.+|.++.. +....+...+.+.. ...++.++..|+.+..-
T Consensus 9 k~vlItGa~~g-IG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~D~~~~~~~~~~~ 80 (257)
T PRK12744 9 KVVLIAGGAKN-LGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKA-------AGAKAVAFQADLTTAAAVEKLF 80 (257)
T ss_pred cEEEEECCCch-HHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHH-------hCCcEEEEecCcCCHHHHHHHH
Confidence 46777775433 33333 2345667666642 22333333332211 12357788888865321
Q ss_pred -----CCCcceeeEechhh------hhcChhhHH-----------HHHHHHHHhcccCcEEE
Q 024100 227 -----ETGRYDVIWVQWCI------GHLTDDDFV-----------SFFKRAKENIARSGTFL 266 (272)
Q Consensus 227 -----~~~~fDlIvs~~vl------~hl~d~~~~-----------~~l~~~~r~LkpgG~li 266 (272)
..+..|+++.+... .+.+.+++. .+++.+...++++|.++
T Consensus 81 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv 142 (257)
T PRK12744 81 DDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIV 142 (257)
T ss_pred HHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEE
Confidence 01367888865543 233333332 23455556666667554
No 499
>PRK06223 malate dehydrogenase; Reviewed
Probab=39.76 E-value=1.8e+02 Score=26.39 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=24.3
Q ss_pred eeeEeeccc-chHHHHHHHhcC-CcEEEEeCCHHHH
Q 024100 160 VALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFL 193 (272)
Q Consensus 160 ~VLDiGcGt-G~~t~~LLa~~~-~~v~~vD~S~~ml 193 (272)
+|.=+|+|. |......++... .++.++|.+++..
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~ 39 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVP 39 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchh
Confidence 678889987 766665555543 2899999877654
No 500
>PTZ00117 malate dehydrogenase; Provisional
Probab=39.74 E-value=1.9e+02 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=26.1
Q ss_pred CCeeeEeeccc-chHHHHHHHhcC-CcEEEEeCCHHHH
Q 024100 158 HLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFL 193 (272)
Q Consensus 158 ~~~VLDiGcGt-G~~t~~LLa~~~-~~v~~vD~S~~ml 193 (272)
..+|.=+|+|. |.....+++... ..+.++|++++..
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~ 42 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVP 42 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccc
Confidence 34788999997 776666555544 5799999887543
Done!