Query 024101
Match_columns 272
No_of_seqs 135 out of 200
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 08:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02601 beta-carotene hydroxy 100.0 2E-105 4E-110 733.1 22.4 258 1-269 1-259 (303)
2 PF04116 FA_hydroxylase: Fatty 99.5 6.6E-14 1.4E-18 105.7 4.7 110 151-269 2-114 (114)
3 PLN02434 fatty acid hydroxylas 98.1 3.7E-05 8.1E-10 70.2 11.8 112 147-269 84-206 (237)
4 COG3000 ERG3 Sterol desaturase 97.8 0.00019 4.1E-09 64.9 10.7 112 147-270 96-213 (271)
5 PLN02869 fatty aldehyde decarb 95.4 0.042 9E-07 56.7 7.2 57 153-209 134-199 (620)
6 TIGR02230 ATPase_gene1 F0F1-AT 92.1 1 2.2E-05 37.0 7.9 66 97-166 30-98 (100)
7 PF11947 DUF3464: Protein of u 87.9 3.3 7.1E-05 36.3 8.1 57 91-158 56-115 (153)
8 PRK03557 zinc transporter ZitB 83.1 12 0.00027 34.6 9.9 128 91-239 65-207 (312)
9 COG1230 CzcD Co/Zn/Cd efflux s 80.8 11 0.00024 36.0 8.8 130 90-240 67-210 (296)
10 KOG0872 Sterol C5 desaturase [ 73.3 12 0.00026 36.3 6.9 43 137-182 122-165 (312)
11 TIGR01297 CDF cation diffusion 71.5 14 0.0003 32.3 6.4 133 91-238 36-178 (268)
12 TIGR02908 CoxD_Bacillus cytoch 69.0 30 0.00065 29.1 7.5 40 124-163 69-110 (110)
13 PF04678 DUF607: Protein of un 68.7 27 0.00059 30.3 7.5 54 93-157 83-137 (180)
14 KOG0539 Sphingolipid fatty aci 67.8 39 0.00084 31.9 8.7 84 176-269 124-209 (240)
15 PRK09509 fieF ferrous iron eff 66.6 28 0.0006 31.9 7.5 136 91-239 57-200 (299)
16 COG0053 MMT1 Predicted Co/Zn/C 65.0 29 0.00063 32.6 7.4 112 91-210 59-177 (304)
17 PF12270 Cyt_c_ox_IV: Cytochro 61.0 54 0.0012 28.5 7.8 106 114-233 10-124 (137)
18 PRK10019 nickel/cobalt efflux 60.4 40 0.00086 32.0 7.5 20 219-238 216-235 (279)
19 PF06072 Herpes_US9: Alphaherp 60.2 24 0.00051 27.2 4.9 22 90-111 16-38 (60)
20 PLN02434 fatty acid hydroxylas 59.7 40 0.00087 31.4 7.3 89 176-270 29-129 (237)
21 cd01060 Membrane-FADS-like The 54.0 15 0.00033 27.8 3.1 37 232-270 14-62 (122)
22 PRK02251 putative septation in 53.2 14 0.00031 29.9 2.9 32 107-143 33-64 (87)
23 PLN02953 phosphatidate cytidyl 41.4 98 0.0021 31.3 7.1 14 223-236 204-217 (403)
24 PLN02598 omega-6 fatty acid de 41.3 65 0.0014 32.0 5.9 45 225-272 132-188 (421)
25 PF07331 TctB: Tripartite tric 35.6 2.2E+02 0.0049 22.5 9.4 38 120-157 11-54 (141)
26 PRK11463 fxsA phage T7 F exclu 34.9 1.4E+02 0.003 25.7 6.2 30 126-155 54-83 (148)
27 COG5547 Small integral membran 34.6 29 0.00063 26.8 1.9 18 195-212 14-31 (62)
28 cd03507 Delta12-FADS-like The 33.1 55 0.0012 29.0 3.7 45 225-272 40-96 (222)
29 PLN02220 delta-9 acyl-lipid de 32.7 82 0.0018 30.1 4.9 29 237-270 76-120 (299)
30 PF06738 DUF1212: Protein of u 32.6 3E+02 0.0064 23.2 7.9 60 91-160 86-145 (193)
31 cd03511 Rhizopine-oxygenase-li 31.7 84 0.0018 28.3 4.7 39 232-272 57-107 (285)
32 PF04186 FxsA: FxsA cytoplasmi 31.2 1.8E+02 0.004 24.0 6.2 33 124-156 48-80 (119)
33 PF06570 DUF1129: Protein of u 30.8 3.7E+02 0.008 23.6 8.8 19 220-238 181-199 (206)
34 cd03509 DesA_FADS-like Fatty a 30.1 1.5E+02 0.0032 27.7 6.1 47 223-272 32-89 (288)
35 PF08426 ICE2: ICE2; InterPro 29.1 96 0.0021 31.4 4.9 37 99-137 145-183 (412)
36 PF06522 B12D: NADH-ubiquinone 29.0 44 0.00096 25.4 2.1 34 212-245 3-39 (73)
37 PF06930 DUF1282: Protein of u 28.7 3.6E+02 0.0078 22.7 12.5 96 130-241 46-148 (170)
38 PLN03199 delta6-acyl-lipid des 27.3 72 0.0016 31.9 3.7 26 215-241 158-183 (485)
39 PLN02498 omega-3 fatty acid de 26.4 1.4E+02 0.003 30.4 5.5 47 223-272 155-213 (450)
40 PF03334 PhaG_MnhG_YufB: Na+/H 26.0 2.3E+02 0.0049 21.9 5.6 55 107-166 27-81 (81)
41 COG4682 Predicted membrane pro 25.5 42 0.00092 29.1 1.6 37 196-232 80-118 (128)
42 PF01925 TauE: Sulfite exporte 25.5 3.9E+02 0.0085 22.7 7.4 32 135-166 188-219 (240)
43 PF11998 DUF3493: Protein of u 25.3 3.4E+02 0.0075 21.4 7.8 51 105-163 22-72 (75)
44 PF08006 DUF1700: Protein of u 24.5 2.6E+02 0.0057 23.7 6.2 15 223-237 147-161 (181)
45 PF04834 Adeno_E3_14_5: Early 24.1 71 0.0015 26.5 2.6 32 99-130 16-48 (97)
46 PF03824 NicO: High-affinity n 23.9 5.4E+02 0.012 23.3 8.4 60 105-164 39-103 (282)
47 PF02319 E2F_TDP: E2F/DP famil 23.1 52 0.0011 24.6 1.5 29 90-118 28-59 (71)
48 COG3030 FxsA Protein affecting 23.1 2.4E+02 0.0052 25.1 5.8 34 123-156 52-85 (158)
49 PF11014 DUF2852: Protein of u 22.9 69 0.0015 27.2 2.3 25 202-233 11-35 (115)
50 KOG1287 Amino acid transporter 22.9 5.8E+02 0.013 26.4 9.2 128 85-246 305-444 (479)
51 PF10176 DUF2370: Protein of u 22.9 71 0.0015 29.9 2.6 47 189-240 84-140 (233)
52 PRK10929 putative mechanosensi 22.7 6.6E+02 0.014 28.6 10.2 64 105-168 787-861 (1109)
53 PLN02498 omega-3 fatty acid de 22.6 1.2E+02 0.0025 30.9 4.2 57 179-241 264-322 (450)
54 COG0598 CorA Mg2+ and Co2+ tra 22.3 1E+02 0.0022 28.8 3.5 44 193-237 267-316 (322)
55 PF04688 Phage_holin: Phage ly 21.9 1.4E+02 0.0031 21.5 3.4 29 136-164 3-31 (47)
56 PF06781 UPF0233: Uncharacteri 21.9 2.2E+02 0.0048 23.0 4.9 32 107-143 32-64 (87)
57 PF00664 ABC_membrane: ABC tra 21.7 4.2E+02 0.0091 21.1 7.6 19 132-150 250-268 (275)
58 PF14110 DUF4282: Domain of un 21.7 3.9E+02 0.0085 20.8 6.8 58 104-168 16-73 (90)
59 PF05232 BTP: Bacterial Transm 20.5 1.7E+02 0.0038 22.0 3.8 38 193-236 15-52 (67)
60 cd03508 Delta4-sphingolipid-FA 20.4 97 0.0021 29.1 3.0 91 181-272 5-109 (289)
61 PF09925 DUF2157: Predicted me 20.1 5E+02 0.011 21.4 9.3 18 103-120 34-51 (145)
No 1
>PLN02601 beta-carotene hydroxylase
Probab=100.00 E-value=1.8e-105 Score=733.09 Aligned_cols=258 Identities=67% Similarity=1.122 Sum_probs=232.6
Q ss_pred Ccccccc-ccccccccccccccCCCCCCCCCCCCccCCcccccccccccccCCCCceeEEEEeccccccccccccchhhh
Q 024101 1 MAVGLLA-AIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCFVLEEKKQSTQIETFTEEEE 79 (272)
Q Consensus 1 ma~~~s~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~c~v~~~~~~~~~~~~~~~~~~ 79 (272)
||+|||+ |.|++|.+. ..+..+.|+++..|+|..+.. +.|| + ++++||||+||+++.+++++++|+++
T Consensus 1 ma~~~~~~~~t~~~l~~-----~~~~~~~~~~~~~f~~~~~~~---~~~~--~-~~~~~c~v~~~~~~~~~~~~~~~~~~ 69 (303)
T PLN02601 1 MAAGLSTIAVTLKPLHR-----SDFRLNHPISLAVFPPSLRFN---GFRR--R-KILTVCFVVEERKQSSPMENDEKPES 69 (303)
T ss_pred CcccccccccccccCcc-----cCccCCCCcccccCCHHHHhh---hccc--C-CceeEEEEeccccccccccccchhhh
Confidence 8999999 999999654 344455555567788864321 2233 3 56899999999999887777666665
Q ss_pred hhhhhhcchHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHH
Q 024101 80 EESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (272)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf 159 (272)
++.+++...++|++||++||||||+||++||+|||+||||||++||||||+|||||||||+.||++++++++|||++|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf 149 (303)
T PLN02601 70 TTSSSEILMTSRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEF 149 (303)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHhhhhc
Q 024101 160 WARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHD 239 (272)
Q Consensus 160 ~Aw~aHKylMHG~LW~~H~sHH~pr~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYffVHD 239 (272)
||||+|||||||+||.||||||+|++|+||+||+|||+||+|||+||++|++++|++|++|||||+|||+||++||||||
T Consensus 150 ~Aw~aHKYvMHG~LW~lH~sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHD 229 (303)
T PLN02601 150 WARWAHRALWHDSLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHD 229 (303)
T ss_pred HHHHHHHHHHHhcchhhhhhcCCCCCCCcccccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred ceecCcccCCcCCCCHHHHHHHHHHHhhhc
Q 024101 240 GLVHKRFPVGPIADVPYFRRVAAAHQVNDQ 269 (272)
Q Consensus 240 gLVHqRfp~~~~a~~pYlrrl~~AHklHH~ 269 (272)
||||||||+++++|+||+|||++|||+||+
T Consensus 230 gLVHqRfp~~~~a~~~Y~rrl~~AHklHHa 259 (303)
T PLN02601 230 GLVHKRFPVGPIANVPYLRKVAAAHQLHHT 259 (303)
T ss_pred hhhccccccCCCCCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999997
No 2
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.45 E-value=6.6e-14 Score=105.73 Aligned_cols=110 Identities=29% Similarity=0.582 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhhhhhccCCCCC-CCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhh
Q 024101 151 VGAAVGMEFWARWAHKALWH--ASLWHMHESHHRPR-EGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGI 227 (272)
Q Consensus 151 lgtfvgMEf~Aw~aHKylMH--G~LW~~H~sHH~pr-~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGI 227 (272)
+++++.+|++.|++|| +|| +++|.+|+.||++. ..++.... +..+.++....+..++..- ..+.-...+.+|+
T Consensus 2 ~~~~l~~d~~~Y~~HR-l~H~~~~l~~~H~~HH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 77 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHR-LLHKIPFLWRIHKVHHSPKNPTPLSAFR-FHPLEALLLALLPLLLPLL--LLPFHALAFLLGI 77 (114)
T ss_pred eeeHHHHHHHHHHHHH-HHhcCchHHHHHHHHhCCcccCchHHHH-cChHHHHHHHHHHHHHHHH--HHhHhHHHHHHHH
Confidence 5678999999999999 999 68999999999764 34443222 2222222222222111000 0111245677999
Q ss_pred hhhhhHHhhhhcceecCcccCCcCCCCHHHHHHHHHHHhhhc
Q 024101 228 TVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQVNDQ 269 (272)
Q Consensus 228 TlYGiaYffVHDgLVHqRfp~~~~a~~pYlrrl~~AHklHH~ 269 (272)
+++++.|.+.|+++ +.+.+ ...+|++...+.|++||+
T Consensus 78 ~~~~~~~~~~H~~~-~~~~~----~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 78 ALFYLWYIFIHSGY-HHRFP----PRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHHhhcCc-cCCCC----CcchhHhcCHHHHHhhCc
Confidence 99999999999999 43332 445799999999999995
No 3
>PLN02434 fatty acid hydroxylase
Probab=98.12 E-value=3.7e-05 Score=70.20 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------hhhhhhccCC-CCCCC-CCccchhhHhhhHHHHHHHHHhhcccCCC
Q 024101 147 FALSVGAAVGMEFWARWAHKALWHA---------SLWHMHESHH-RPREG-PFELNDVFAIINAVPAIALLSFGFFHKGL 215 (272)
Q Consensus 147 ~~l~lgtfvgMEf~Aw~aHKylMHG---------~LW~~H~sHH-~pr~G-~FE~NDlFaiifAvpAi~Li~~G~~~~g~ 215 (272)
+++++++++.-=++-|.+||++.|. ....+|..|| .|.+. .+=-==..+++.+.|...++.+-+ .+
T Consensus 84 ~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D~~rLv~PP~~~~~l~~~~~~l~~~~~-~~-- 160 (237)
T PLN02434 84 VLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILCVPFWNLIALFA-TP-- 160 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCCCCCeecCcHHHHHHHHHHHHHHHHHc-ch--
Confidence 3444555555566668899999994 3456899999 46554 211112344444444443333221 11
Q ss_pred cchhhhhhhhhhhhhhhHHhhhhcceecCcccCCcCCCCHHHHHHHHHHHhhhc
Q 024101 216 VPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQVNDQ 269 (272)
Q Consensus 216 ~p~l~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~pYlrrl~~AHklHH~ 269 (272)
....++-.|..+.-++|=.+|-.+=|. +++.+|+|++.+-|..||-
T Consensus 161 --~~a~~~~~G~l~gYl~Yd~~Hy~lH~~------~p~~~~~r~lkr~H~~HHf 206 (237)
T PLN02434 161 --ATAPALFGGGLLGYVMYDCTHYFLHHG------QPSTDVLRNLKKYHLNHHF 206 (237)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhc------CcchHHHHHHHHHHHHHcC
Confidence 112233345555558899999876552 3456899999999999994
No 4
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=97.82 E-value=0.00019 Score=64.92 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhccCCCCC-CC--CCccchhhHhhhH--HHHHHHHHhhcccCCCcchhh
Q 024101 147 FALSVGAAVGMEFWARWAHKALWHAS-LWHMHESHHRPR-EG--PFELNDVFAIINA--VPAIALLSFGFFHKGLVPGLC 220 (272)
Q Consensus 147 ~~l~lgtfvgMEf~Aw~aHKylMHG~-LW~~H~sHH~pr-~G--~FE~NDlFaiifA--vpAi~Li~~G~~~~g~~p~l~ 220 (272)
.+..+.+++.-|++=+|+||..=+.. +|.+|+-||... .- .=..|+.+-.+.. .-.+.++.+|. . .
T Consensus 96 ~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~~-----~---~ 167 (271)
T COG3000 96 ALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLGL-----S---P 167 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhcC-----C---H
Confidence 45556688899999999999988885 799999999532 22 2244444433222 12222333442 2 2
Q ss_pred hhhhhhhhhhhhHHhhhhcceecCcccCCcCCCCHHHHHHHHHHHhhhcc
Q 024101 221 FGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQVNDQI 270 (272)
Q Consensus 221 fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~pYlrrl~~AHklHH~v 270 (272)
..+++.+++-++.+++.|.++.+. .+.+.. +|.-...+-|++||+.
T Consensus 168 ~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~---~~v~~~p~~H~lHH~~ 213 (271)
T COG3000 168 VAVALLFIFLLFWAVLIHSNLDLP-LPLGWL---RYVFNTPRHHRLHHSK 213 (271)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc-CCcccc---eeeecCchHHHHhccC
Confidence 346688889999999999999986 444332 2344556779999975
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=95.42 E-value=0.042 Score=56.75 Aligned_cols=57 Identities=26% Similarity=0.448 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhhccCCCCC-CCC-------CccchhhHhhhHHHHHHHHHhh
Q 024101 153 AAVGMEFWARWAHKALWHA-SLWHMHESHHRPR-EGP-------FELNDVFAIINAVPAIALLSFG 209 (272)
Q Consensus 153 tfvgMEf~Aw~aHKylMHG-~LW~~H~sHH~pr-~G~-------FE~NDlFaiifAvpAi~Li~~G 209 (272)
=+..+|++-+|.||..=|. ++|..|+-||... ..| ||-.=++.+++++|.+.+++.|
T Consensus 134 hv~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g 199 (620)
T PLN02869 134 HMGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTG 199 (620)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445899999999977665 4799999999642 323 2211123445566655554444
No 6
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=92.12 E-value=1 Score=36.98 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=36.9
Q ss_pred HhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhcc---CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 97 ARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQME---GGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (272)
Q Consensus 97 ~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~---~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~aHK 166 (272)
|||+.+|..+.--+.+|++|+.-.+...+-+=.=+-++ +++..++ ..++.+|.++|+=.+=.|+||
T Consensus 30 a~r~~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~t----l~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 30 ARKNATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWT----LTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 34445788898899999999865544333222222232 3443332 335556666666555555554
No 7
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=87.93 E-value=3.3 Score=36.31 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccC--CCccHHHH-HHHHHHHHHHHHHHH
Q 024101 91 RVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEG--GEVPLAEM-FGTFALSVGAAVGME 158 (272)
Q Consensus 91 ~~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~--g~~p~~eM-~~~~~l~lgtfvgME 158 (272)
-|++|+.|+ |+-++||-....+++.-=|+|-.+. .|+|-.-. +.+++++..+++|.-
T Consensus 56 ~Vs~RM~rR-----------m~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGis 115 (153)
T PF11947_consen 56 VVSNRMLRR-----------MAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGIS 115 (153)
T ss_pred HHHHHHHHH-----------HHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhh
Confidence 567777664 4456677666666666666676654 67776666 566666666777654
No 8
>PRK03557 zinc transporter ZitB; Provisional
Probab=83.10 E-value=12 Score=34.59 Aligned_cols=128 Identities=14% Similarity=0.204 Sum_probs=61.6
Q ss_pred HHHHHHHhhhh-h-------hhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 91 RVAEKLARKRS-E-------RFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (272)
Q Consensus 91 ~~~~~~~rk~~-e-------r~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw 162 (272)
-++.|+++|.. + |..++. +...++.+...++..+|-=..--.++-+++..- .+.+.+.+++.-++..|
T Consensus 65 l~a~~~s~kp~d~~hpyG~~r~E~l~-al~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~---~~~v~~~~~~~~~~~~~ 140 (312)
T PRK03557 65 LLAVQFSRRPPTIRHTFGWLRLTTLA-AFVNAIALVVITILIVWEAIERFRTPRPVAGGM---MMAIAVAGLLANILSFW 140 (312)
T ss_pred HHHHHHhcCCCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCccccchH---HHHHHHHHHHHHHHHHH
Confidence 46777777664 4 444444 444555555555555542111112333333222 22233445566666666
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCC------ccchhhHhhhHHHHHHHHHh-hcccCCCcchhhhhhhhhhhhhhhHHh
Q 024101 163 WAHKALWHASLWHMHESHHRPREGPF------ELNDVFAIINAVPAIALLSF-GFFHKGLVPGLCFGAGLGITVFGMAYM 235 (272)
Q Consensus 163 ~aHKylMHG~LW~~H~sHH~pr~G~F------E~NDlFaiifAvpAi~Li~~-G~~~~g~~p~l~fgiGlGITlYGiaYf 235 (272)
+.+++ .+.+.... =+||++.-+.++.++++..+ |+ .+.+-..++.+++.+.-.+|-
T Consensus 141 ~~~~~-------------~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~~g~----~~~Dpi~~ilis~~i~~~~~~ 203 (312)
T PRK03557 141 LLHHG-------------SEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWTGW----TPADPILSILVSVLVLRSAWR 203 (312)
T ss_pred HHhcc-------------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----cchhHHHHHHHHHHHHHHHHH
Confidence 55432 11111122 25788777766666655432 43 122224455566666555555
Q ss_pred hhhc
Q 024101 236 FVHD 239 (272)
Q Consensus 236 fVHD 239 (272)
++-|
T Consensus 204 l~~~ 207 (312)
T PRK03557 204 LLKE 207 (312)
T ss_pred HHHH
Confidence 5444
No 9
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=80.75 E-value=11 Score=36.00 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=77.5
Q ss_pred HHHHHHHHhhhh-hhhHH------HHHHHHHhhhhhHHHHHHHh---hhhhhhccCCCccHHHHHHHHHHHHHHHHHHHH
Q 024101 90 ARVAEKLARKRS-ERFTY------LVAAVMSSFGITSMAVMAVY---YRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (272)
Q Consensus 90 ~~~~~~~~rk~~-er~ty------~~aa~~ss~gi~~~a~~a~y---~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf 159 (272)
.-+|.+++||++ .|+|| ..+|..+.+-+...+++-+| .|| .+.-+++..+|+..-++- .+.==+
T Consensus 67 al~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~---~~P~~i~~~~ml~va~~G---L~vN~~ 140 (296)
T COG1230 67 ALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRL---LAPPPIHYSGMLVVAIIG---LVVNLV 140 (296)
T ss_pred HHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCccchHHHHHHH---HHHHHH
Confidence 357788887775 45677 45777777666666666555 555 345677778885332222 221122
Q ss_pred HHHHHHHHHHHhhhhhhhccCCC--CCCC-CCc-cchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHh
Q 024101 160 WARWAHKALWHASLWHMHESHHR--PREG-PFE-LNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYM 235 (272)
Q Consensus 160 ~Aw~aHKylMHG~LW~~H~sHH~--pr~G-~FE-~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYf 235 (272)
.+ |-+|++||+ .-+| .+. .+|...=+-++.|-+++.+- +..+++...++++++...--+|-
T Consensus 141 ~a------------~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~---~w~~~Dpi~si~i~~lil~~a~~ 205 (296)
T COG1230 141 SA------------LLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFT---GWSWLDPILSIVIALLILSSAWP 205 (296)
T ss_pred HH------------HHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCccchHHHHHHHHHHHHHHHH
Confidence 23 556666442 2233 444 49998888777776655432 21344556677777777777888
Q ss_pred hhhcc
Q 024101 236 FVHDG 240 (272)
Q Consensus 236 fVHDg 240 (272)
+..|-
T Consensus 206 l~k~s 210 (296)
T COG1230 206 LLKES 210 (296)
T ss_pred HHHHH
Confidence 88776
No 10
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=73.27 E-value=12 Score=36.32 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCCC
Q 024101 137 EVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHA-SLWHMHESHHR 182 (272)
Q Consensus 137 ~~p~~eM~~~~~l~lgtfvgMEf~Aw~aHKylMHG-~LW~~H~sHH~ 182 (272)
|.||-+.+..+.+++ +.-||.-+|+||.+=|- +-|.+|+-||.
T Consensus 122 ~~gw~~~~~~i~~fl---fF~Df~iYw~HR~lH~~~vy~~LH~~HH~ 165 (312)
T KOG0872|consen 122 EYGWFLLFVSIFLFL---FFTDFGIYWAHRELHHRGVYKRLHKPHHI 165 (312)
T ss_pred cccHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhhhcchhhh
Confidence 777777766665543 56799999999999876 46999999994
No 11
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=71.52 E-value=14 Score=32.34 Aligned_cols=133 Identities=12% Similarity=0.172 Sum_probs=67.2
Q ss_pred HHHHHHHhhh-hhhhHH------HHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 91 RVAEKLARKR-SERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (272)
Q Consensus 91 ~~~~~~~rk~-~er~ty------~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~ 163 (272)
-++.|.++|+ .++++| -+++...++.+..+++...|==+..-+++++.+.. ...+.+.+.+++...+.+|+
T Consensus 36 l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~ 113 (268)
T TIGR01297 36 LLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLINPEPEIDG--GTMLIVAIVGLIVNLILALY 113 (268)
T ss_pred HHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc--hhHHHHHHHHHHHHHHHHHH
Confidence 4566777666 344443 13444455555555555444222222344322221 12233445566667777766
Q ss_pred HHHHHHHhhhhhhhccCCCC---CCCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHhhhh
Q 024101 164 AHKALWHASLWHMHESHHRP---REGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVH 238 (272)
Q Consensus 164 aHKylMHG~LW~~H~sHH~p---r~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYffVH 238 (272)
..+. | +....+ .++.--++|++.-+.++.++.+..+|. .+.+-..++.+++.+.-.++-.+-
T Consensus 114 ~~~~---~------~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~~----~~~D~l~~i~i~~~i~~~~~~l~~ 178 (268)
T TIGR01297 114 LHRV---G------HRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGW----HWADPIAALLISLLILYTAFRLLK 178 (268)
T ss_pred HHHh---C------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6653 1 111111 133445788888888888888777772 122334455555555555555443
No 12
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=69.02 E-value=30 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHhhhhhhhccC--CCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 124 AVYYRFWWQMEG--GEVPLAEMFGTFALSVGAAVGMEFWARW 163 (272)
Q Consensus 124 a~y~rf~~~m~~--g~~p~~eM~~~~~l~lgtfvgMEf~Aw~ 163 (272)
.|-.+|--+|+. -+.+..=|+..+++.+-|.++-+.+.||
T Consensus 69 ~VqL~yFLHm~~k~~~~~~~~if~gi~va~~tv~a~~~~iw~ 110 (110)
T TIGR02908 69 AFQLYYFMHMKDKGHEVPAQFIYGGVFVTMLVVLAFTTITWW 110 (110)
T ss_pred HHHHHHheeeCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355777888863 4566666788888888899999999886
No 13
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=68.70 E-value=27 Score=30.33 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHH-HHHHHHHHHHHHHH
Q 024101 93 AEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEM-FGTFALSVGAAVGM 157 (272)
Q Consensus 93 ~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM-~~~~~l~lgtfvgM 157 (272)
..+.|+|++.|..+...|.++ +=+++.+|..|- +..|.-| =.|+.++.+++++.
T Consensus 83 id~~A~~~~~~~~w~gl~~l~-------~q~~~l~rLTf~----e~sWDvMEPVTYfv~~~~~i~~ 137 (180)
T PF04678_consen 83 IDEKAEKRARRLLWGGLALLV-------VQFGILARLTFW----EYSWDVMEPVTYFVGYGTSILG 137 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh----ccccchhhhHHHHHhHHHHHHH
Confidence 344555666666665555444 234455666654 5556656 55666666666554
No 14
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=67.81 E-value=39 Score=31.92 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=41.7
Q ss_pred hhccCC-CCCCC-CCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHhhhhcceecCcccCCcCCC
Q 024101 176 MHESHH-RPREG-PFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIAD 253 (272)
Q Consensus 176 ~H~sHH-~pr~G-~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~ 253 (272)
+|--|| .|-+| .+----+-+.|.++|--.++.+=+. .+..|-+.|-|+..| +.|=..|==|=|.+- ++
T Consensus 124 ~HGcHHk~P~D~~RLVfPP~~~~il~~pfy~~~~~vl~----~~~~~a~faG~l~GY-V~YDmtHYyLHhg~p-----~~ 193 (240)
T KOG0539|consen 124 IHGCHHKLPMDGYRLVFPPTPFAILAAPFYLILSLVLP----HPVAPAGFAGGLLGY-VCYDMTHYYLHHGSP-----PK 193 (240)
T ss_pred HhcccccCCCCCceEecCCchHHHHHHHHHHHHHHhcC----cchhhhhhccchhhh-hhhhhhhhhhhcCCC-----CC
Confidence 588899 46666 3333333445555554444433321 111121111122222 233333433334333 46
Q ss_pred CHHHHHHHHHHHhhhc
Q 024101 254 VPYFRRVAAAHQVNDQ 269 (272)
Q Consensus 254 ~pYlrrl~~AHklHH~ 269 (272)
.+|++.+.+-|-=||-
T Consensus 194 ~~~~~~lK~yHl~HHf 209 (240)
T KOG0539|consen 194 RPYLKHLKKYHLNHHF 209 (240)
T ss_pred chHHHHHHHHHhhhhh
Confidence 6899999999988884
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=66.59 E-value=28 Score=31.87 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred HHHHHHHhhhh-hh-------hHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 91 RVAEKLARKRS-ER-------FTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (272)
Q Consensus 91 ~~~~~~~rk~~-er-------~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw 162 (272)
-++-|+++|+. ++ ..++. +...++-+..+++...|-=..--+++++.+...+ .+.+.+.+++...+.++
T Consensus 57 l~~~~~s~k~~d~~~pyG~~r~E~l~-~l~~~~~l~~~~~~~~~esi~~l~~~~~~~~~~~--~l~~~~~~~v~~~~~~~ 133 (299)
T PRK09509 57 LLVVRYSLQPADDEHTFGHGKAESLA-ALAQSMFISGSALFLFLTGIQHLISPTPMNDPGV--GIIVTLVALICTLILVT 133 (299)
T ss_pred HHHHHHhCCCCCCCCCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchh--HHHHHHHHHHHHHHHHH
Confidence 35566665542 33 34444 3344444444444444322222245555543333 22334445555666555
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHhhhhc
Q 024101 163 WAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHD 239 (272)
Q Consensus 163 ~aHKylMHG~LW~~H~sHH~pr~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYffVHD 239 (272)
+..+.. +. ++|-=-..++.==+||++.=+.++.++.+..+|+ .+.+-..++.+|+.+...+|-.+-|
T Consensus 134 ~~~~~~-~~-----~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~~g~----~~~D~i~aiii~~~il~~~~~i~~~ 200 (299)
T PRK09509 134 FQRWVV-RK-----TQSQAVRADMLHYQSDVMMNGAILLALGLSWYGW----HRADALFALGIGIYILYSALRMGYE 200 (299)
T ss_pred HHHHHH-HH-----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444321 10 0000001111222589888766666665555553 2333345555666555555555544
No 16
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=64.97 E-value=29 Score=32.57 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=65.0
Q ss_pred HHHHHHHhhhhhh-hHH------HHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 91 RVAEKLARKRSER-FTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (272)
Q Consensus 91 ~~~~~~~rk~~er-~ty------~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~ 163 (272)
-++-|.++|+..| ..| -+++...|+-|...++...|.=+.--.. ..|..--...+.+.+++.+.||.+.++
T Consensus 59 l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~i~~~g~~i~~~a~~~~~~--~~~~~~~~~~~~v~l~s~~~~~~l~~~ 136 (304)
T COG0053 59 LIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLIS--PQPVEPPLLALGVALISIVIKEALYRY 136 (304)
T ss_pred HHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888754 222 2344444555555555555443333332 233333355667778899999999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCccchhhHhhhHHHHHHHHHhhc
Q 024101 164 AHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGF 210 (272)
Q Consensus 164 aHKylMHG~LW~~H~sHH~pr~G~FE~NDlFaiifAvpAi~Li~~G~ 210 (272)
.+|.-==-- |-=-..++.--++|++.-+-++.+++...+|+
T Consensus 137 ~~~~~kk~~------S~aL~Ada~h~~sD~~ts~~~lvgl~~~~~g~ 177 (304)
T COG0053 137 LRRVGKKTN------SQALIADALHHRSDVLTSLAVLVGLLGSLLGW 177 (304)
T ss_pred HHHHHHHhC------CHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 887531100 00001122223459999999999999777784
No 17
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=60.99 E-value=54 Score=28.51 Aligned_cols=106 Identities=19% Similarity=0.261 Sum_probs=57.1
Q ss_pred hhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhhccCC-------CCC
Q 024101 114 SFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGM--EFWARWAHKALWHASLWHMHESHH-------RPR 184 (272)
Q Consensus 114 s~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgM--Ef~Aw~aHKylMHG~LW~~H~sHH-------~pr 184 (272)
.+++-...+..||-=++...+++- |-.++.+|++.+..+. =+.=++++|-+ |.. =||.- ...
T Consensus 10 ~l~~Ff~~~~~vY~~~t~~~~~~~----E~~Gt~aL~ls~~l~~mig~yl~~~~rr~--~~r---PED~~daEI~dgAGe 80 (137)
T PF12270_consen 10 GLAVFFLVVAVVYGFWTKWSGDGG----EWVGTVALVLSGGLALMIGFYLRFTARRI--GPR---PEDREDAEIADGAGE 80 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC----CcchHHHHHHHHHHHHHHHHHHHHHHhhC--CCC---CccccccccccCCCC
Confidence 345555667778877777665443 7778887777655432 12233444443 211 11111 122
Q ss_pred CCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhH
Q 024101 185 EGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMA 233 (272)
Q Consensus 185 ~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGia 233 (272)
-|.|...-..-+..|. +++++.+|+-. ..+.+.+|++++++++.
T Consensus 81 ~GfFsP~SwWPl~la~-~~al~~lGla~----g~Wl~~iG~~~~i~~~~ 124 (137)
T PF12270_consen 81 LGFFSPHSWWPLVLAA-AAALVFLGLAF----GWWLILIGAVLLIVAVV 124 (137)
T ss_pred cCcCCCccHhHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3566666666666554 44555567421 11245577777777665
No 18
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=60.37 E-value=40 Score=32.03 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=14.4
Q ss_pred hhhhhhhhhhhhhhHHhhhh
Q 024101 219 LCFGAGLGITVFGMAYMFVH 238 (272)
Q Consensus 219 l~fgiGlGITlYGiaYffVH 238 (272)
++|++|.++|+-.++..++.
T Consensus 216 lafslGtaltm~~vgll~~~ 235 (279)
T PRK10019 216 LSFSIGLALTLVTVGVGAAI 235 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37888888877777777643
No 19
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=60.23 E-value=24 Score=27.16 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=15.6
Q ss_pred HHHHHHH-HhhhhhhhHHHHHHH
Q 024101 90 ARVAEKL-ARKRSERFTYLVAAV 111 (272)
Q Consensus 90 ~~~~~~~-~rk~~er~ty~~aa~ 111 (272)
.|+-++. ++|+..|.+++..++
T Consensus 16 ~RvGr~q~~~r~RrRrc~~~v~~ 38 (60)
T PF06072_consen 16 RRVGRQQHASRRRRRRCRLAVAI 38 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 5787777 677778888865544
No 20
>PLN02434 fatty acid hydroxylase
Probab=59.70 E-value=40 Score=31.36 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=49.8
Q ss_pred hhccCCCCCCCCCccchhh-----------HhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHhhhhcceecC
Q 024101 176 MHESHHRPREGPFELNDVF-----------AIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHK 244 (272)
Q Consensus 176 ~H~sHH~pr~G~FE~NDlF-----------aiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYffVHDgLVHq 244 (272)
.|+--|.+..-++=.||+. -++...+.+.++..|+.............-+|+.++-++=-.+|--+-|.
T Consensus 29 vh~p~~~~~~~rlF~~~~lE~lsrt~w~vvp~iw~pvv~~~~~~~~~~~~~~~~~~~~~~~G~~~wtl~EY~lHRflfH~ 108 (237)
T PLN02434 29 VHQPIVSKEGPRFFESDVLEFLTRTVWWAVPLIWLPVVCWCLVKSVRMGLPLSAVVLMVAFGVFIWTLLEYILHRFLFHI 108 (237)
T ss_pred hcCCccCCCCCCCCCcHHHHHhcCCchhhhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444433455556653 23444445566666654221111111223367777777777788888886
Q ss_pred cccCCcCCCCHHH-HHHHHHHHhhhcc
Q 024101 245 RFPVGPIADVPYF-RRVAAAHQVNDQI 270 (272)
Q Consensus 245 Rfp~~~~a~~pYl-rrl~~AHklHH~v 270 (272)
+ +++++. +-....|..||+.
T Consensus 109 ~------p~~~~~~~~hfllHg~HH~~ 129 (237)
T PLN02434 109 K------TKSYWGNTAHYLLHGCHHKH 129 (237)
T ss_pred C------CcchHHHHHHHHHHHHhhcC
Confidence 5 344544 4566789999975
No 21
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=54.04 E-value=15 Score=27.77 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=24.8
Q ss_pred hHHhhhhcceecCcccCCcCCCCHHH------------HHHHHHHHhhhcc
Q 024101 232 MAYMFVHDGLVHKRFPVGPIADVPYF------------RRVAAAHQVNDQI 270 (272)
Q Consensus 232 iaYffVHDgLVHqRfp~~~~a~~pYl------------rrl~~AHklHH~v 270 (272)
....+.||. +|+++...+ .-|.++ ...+..|..||+.
T Consensus 14 ~~~~~~H~~-~H~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~ 62 (122)
T cd01060 14 GLTVLAHEL-GHRSFFRSR-WLNRLLGALLGLALGGSYGWWRRSHRRHHRY 62 (122)
T ss_pred HHHHHHHHH-hhhhhhccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 567789999 999996432 222333 3446679999975
No 22
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=53.25 E-value=14 Score=29.89 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHH
Q 024101 107 LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEM 143 (272)
Q Consensus 107 ~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM 143 (272)
.++.+|-.+-++.++-+.|||= -+|++|+.+.
T Consensus 33 W~~~~m~~lm~~Gl~WlvvyYl-----~~~~~P~~~l 64 (87)
T PRK02251 33 WFVPLFVALMIIGLIWLVVYYL-----SNGSLPIPAL 64 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-----hCCCcCcccc
Confidence 4577888888999999999995 4688996665
No 23
>PLN02953 phosphatidate cytidylyltransferase
Probab=41.43 E-value=98 Score=31.27 Aligned_cols=14 Identities=43% Similarity=0.569 Sum_probs=9.5
Q ss_pred hhhhhhhhhhHHhh
Q 024101 223 AGLGITVFGMAYMF 236 (272)
Q Consensus 223 iGlGITlYGiaYff 236 (272)
..++.+.+|+.|.-
T Consensus 204 ~di~~s~fgl~Yig 217 (403)
T PLN02953 204 AQLSSTMFGLFYCG 217 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777754
No 24
>PLN02598 omega-6 fatty acid desaturase
Probab=41.29 E-value=65 Score=32.03 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=24.9
Q ss_pred hhhhhhhhHHhhhhcceecCcccCCcCCC------------CHHHHHHHHHHHhhhccCC
Q 024101 225 LGITVFGMAYMFVHDGLVHKRFPVGPIAD------------VPYFRRVAAAHQVNDQIMN 272 (272)
Q Consensus 225 lGITlYGiaYffVHDgLVHqRfp~~~~a~------------~pYlrrl~~AHklHH~v~~ 272 (272)
+|..+-|+ +.+.||.. |+.+--.+.-| .|| ..-+.-|..||+.-|
T Consensus 132 ~G~~~~~l-~vl~Hec~-H~s~~~~~~lN~~vG~~~~~~ll~p~-~~wr~~H~~HH~~tn 188 (421)
T PLN02598 132 LGTAITGF-FVIGHDCG-HNSFSKNQLVEDIVGTIAFTPLIYPF-EPWRIKHNTHHAHTN 188 (421)
T ss_pred HHHHHHHH-HHHHHhcc-ccCCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHccCcC
Confidence 45555444 88899975 76662111111 111 334567888998654
No 25
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=35.58 E-value=2.2e+02 Score=22.53 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=18.6
Q ss_pred HHHHHHhhhhhhhccCCCc------cHHHHHHHHHHHHHHHHHH
Q 024101 120 MAVMAVYYRFWWQMEGGEV------PLAEMFGTFALSVGAAVGM 157 (272)
Q Consensus 120 ~a~~a~y~rf~~~m~~g~~------p~~eM~~~~~l~lgtfvgM 157 (272)
+++.++++..++|++.++. -+.-+++.+++.++.....
T Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~gp~~fP~~l~~~l~~~~~~l~~ 54 (141)
T PF07331_consen 11 LAFGAVFLYQAFQIPSFPSGSPGPGFFPRLLGILLLILSLLLLV 54 (141)
T ss_pred HHHHHHHHHHHHcCCccccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677754322 1222345555555544443
No 26
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=34.86 E-value=1.4e+02 Score=25.71 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=21.6
Q ss_pred hhhhhhhccCCCccHHHHHHHHHHHHHHHH
Q 024101 126 YYRFWWQMEGGEVPLAEMFGTFALSVGAAV 155 (272)
Q Consensus 126 y~rf~~~m~~g~~p~~eM~~~~~l~lgtfv 155 (272)
..|.-=+|..|+.|-.||+-.+++.+|+++
T Consensus 54 l~~~~~~~~~G~~p~~~l~~~~~~~~gg~L 83 (148)
T PRK11463 54 LLRAQRKLARGELPAAELLDGLLLAVAGVL 83 (148)
T ss_pred HHHHHHHHHCCCCcHHHHHHhHHHHHHHHH
Confidence 344444577899999999877777777664
No 27
>COG5547 Small integral membrane protein [Function unknown]
Probab=34.61 E-value=29 Score=26.80 Aligned_cols=18 Identities=33% Similarity=0.798 Sum_probs=15.4
Q ss_pred HhhhHHHHHHHHHhhccc
Q 024101 195 AIINAVPAIALLSFGFFH 212 (272)
Q Consensus 195 aiifAvpAi~Li~~G~~~ 212 (272)
++++..+|++++.+||+.
T Consensus 14 glvglliAili~t~GfwK 31 (62)
T COG5547 14 GLVGLLIAILILTFGFWK 31 (62)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578899999999999853
No 28
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=33.13 E-value=55 Score=29.00 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=25.8
Q ss_pred hhhhhhhhHHhhhhcceecCcccCCcCCCCHHH------------HHHHHHHHhhhccCC
Q 024101 225 LGITVFGMAYMFVHDGLVHKRFPVGPIADVPYF------------RRVAAAHQVNDQIMN 272 (272)
Q Consensus 225 lGITlYGiaYffVHDgLVHqRfp~~~~a~~pYl------------rrl~~AHklHH~v~~ 272 (272)
.|...-|+ +.+.||. .|+.+--.+..| .-+ ..-+.-|..||+.-|
T Consensus 40 ~g~~~~~l-~~l~He~-~H~~~~~~~~~N-~~~g~~~~~~~~~p~~~w~~~H~~HH~~~~ 96 (222)
T cd03507 40 QGLFLTGL-FVLGHDC-GHGSFSDNRRLN-DIVGHILHSPLLVPYHSWRISHNRHHAHTG 96 (222)
T ss_pred HHHHHHHH-HHHhhcc-CCcccccchhHH-HHHHHHHHHHHhCChHHHHHHHHHHHhccC
Confidence 45555444 7889998 788873221111 111 234567888997643
No 29
>PLN02220 delta-9 acyl-lipid desaturase
Probab=32.75 E-value=82 Score=30.11 Aligned_cols=29 Identities=21% Similarity=0.474 Sum_probs=20.7
Q ss_pred hhcceecCcccCCcCCCCHHHHHH----------------HHHHHhhhcc
Q 024101 237 VHDGLVHKRFPVGPIADVPYFRRV----------------AAAHQVNDQI 270 (272)
Q Consensus 237 VHDgLVHqRfp~~~~a~~pYlrrl----------------~~AHklHH~v 270 (272)
.|=.+.||=|+.. +.+|.+ ++.|++||+.
T Consensus 76 yHRl~sHrsfka~-----~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~ 120 (299)
T PLN02220 76 YHRNLAHRSFKLP-----KWLEYPFAYSALFALQGDPIDWVSTHRFHHQF 120 (299)
T ss_pred HHHHHHhhcCcCc-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 7899999988753 233332 3889999975
No 30
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=32.57 E-value=3e+02 Score=23.25 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHH
Q 024101 91 RVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFW 160 (272)
Q Consensus 91 ~~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~ 160 (272)
...+|+++=+++...|-.-..+-+.|+.+.+.... . ||. |.||+..+++.+...+...+.
T Consensus 86 ea~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~l-------f-gg~--~~~~~~a~i~g~~~~~~~~~~ 145 (193)
T PF06738_consen 86 EAIERLDEIDREPPRYPPWLVILAAGLASAAFALL-------F-GGS--WIDMIVAFILGLLVGLLRQLL 145 (193)
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH-------H-CCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 45556655555554444433343444444332221 2 665 889988877776655554443
No 31
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=31.69 E-value=84 Score=28.35 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=22.8
Q ss_pred hHHhhhhcceecCcccCCcCCC------------CHHHHHHHHHHHhhhccCC
Q 024101 232 MAYMFVHDGLVHKRFPVGPIAD------------VPYFRRVAAAHQVNDQIMN 272 (272)
Q Consensus 232 iaYffVHDgLVHqRfp~~~~a~------------~pYlrrl~~AHklHH~v~~ 272 (272)
..+.+.||.. |+.+--.+.-| .+| ..-+..|..||+.-|
T Consensus 57 ~~~~~~He~~-H~~~~~~~~~N~~~g~l~~~~~~~~~-~~~~~~H~~HH~~~~ 107 (285)
T cd03511 57 ALFARWHECV-HGTAFATRWLNDAVGQIAGLMILLPP-DFFRWSHARHHRYTQ 107 (285)
T ss_pred HHHHHHHHhh-cccccCCchHHHHHHHHHHHHhcCCh-HHHHHHHHHHhcCcC
Confidence 5577899974 77763221111 111 234778999998754
No 32
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=31.15 E-value=1.8e+02 Score=23.99 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=24.3
Q ss_pred HHhhhhhhhccCCCccHHHHHHHHHHHHHHHHH
Q 024101 124 AVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVG 156 (272)
Q Consensus 124 a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvg 156 (272)
.+..|.--+|..|+.|-.||+-.+++.+|++.-
T Consensus 48 ~~~~~~~~~~~~g~~p~~~~~~~~~~~~gg~LL 80 (119)
T PF04186_consen 48 RALRRLQQSLRQGEMPGEELLDGALLAVGGVLL 80 (119)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 344455556778999999998888888877653
No 33
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=30.76 E-value=3.7e+02 Score=23.55 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=14.8
Q ss_pred hhhhhhhhhhhhhHHhhhh
Q 024101 220 CFGAGLGITVFGMAYMFVH 238 (272)
Q Consensus 220 ~fgiGlGITlYGiaYffVH 238 (272)
+..+-+|+.+|++-|++=|
T Consensus 181 ~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 181 WVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5567899999999887643
No 34
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=30.09 E-value=1.5e+02 Score=27.68 Aligned_cols=47 Identities=15% Similarity=0.049 Sum_probs=25.7
Q ss_pred hhhhhhhhhhHHhhhhcceecCcccCCcCCC-----------CHHHHHHHHHHHhhhccCC
Q 024101 223 AGLGITVFGMAYMFVHDGLVHKRFPVGPIAD-----------VPYFRRVAAAHQVNDQIMN 272 (272)
Q Consensus 223 iGlGITlYGiaYffVHDgLVHqRfp~~~~a~-----------~pYlrrl~~AHklHH~v~~ 272 (272)
+.+|+.+... +.+.||. .|.-+--.+..| .|| ..-+.-|..||+.-|
T Consensus 32 ~~~~~~~~~~-~~l~Hd~-~Hg~~~~~~~~N~~~g~~~~~l~~p~-~~wr~~H~~HH~~~n 89 (288)
T cd03509 32 LLLIPLAALH-SSLQHEL-LHGHPTRSRWVNEALGYPPLALWYPY-TRYRDTHLAHHRDED 89 (288)
T ss_pred HHHHHHHHHH-HHHHHHh-hccCcccChHHHHHHHHHHHHHhcCH-HHHHHHHHHHcCCCC
Confidence 4445554444 7889998 465442111111 122 456778999997543
No 35
>PF08426 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal ER protein which has been shown to play an important role in forming/maintaining the cortical ER []. It has also been identified as a protein which is necessary for nuclear inner membrane targeting [].
Probab=29.07 E-value=96 Score=31.39 Aligned_cols=37 Identities=19% Similarity=0.547 Sum_probs=27.3
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHh--hhhhhhccCCC
Q 024101 99 KRSERFTYLVAAVMSSFGITSMAVMAVY--YRFWWQMEGGE 137 (272)
Q Consensus 99 k~~er~ty~~aa~~ss~gi~~~a~~a~y--~rf~~~m~~g~ 137 (272)
+||| +|++...+.|=+|.+.++.-.| |-|-|+.+-.+
T Consensus 145 ~rSd--~W~I~~Li~Sg~vit~s~YfLyRIy~fp~~is~~~ 183 (412)
T PF08426_consen 145 GRSD--SWMIVSLIASGSVITASLYFLYRIYVFPWTISNLD 183 (412)
T ss_pred CCCc--hhHHHHHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 4677 9999999999999888876654 55666664433
No 36
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=29.00 E-value=44 Score=25.43 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=22.6
Q ss_pred cCCCcchh-hhhhhhhhhhhhhHHhhhh--cceecCc
Q 024101 212 HKGLVPGL-CFGAGLGITVFGMAYMFVH--DGLVHKR 245 (272)
Q Consensus 212 ~~g~~p~l-~fgiGlGITlYGiaYffVH--DgLVHqR 245 (272)
++.++|.+ |.|+|+|+.+|-+++.++. |+.+.++
T Consensus 3 ~pel~PL~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~ 39 (73)
T PF06522_consen 3 HPELYPLFVIVGVAVGGATFYLYRLLLTNPDVRWNKK 39 (73)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEec
Confidence 34566666 6778888888888886654 4555443
No 37
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=28.66 E-value=3.6e+02 Score=22.73 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=43.0
Q ss_pred hhhccCCCc-cHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCccchhhHhhhHHHHHHHH
Q 024101 130 WWQMEGGEV-PLAEMFGTFALSVGAAVG--MEFWARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALL 206 (272)
Q Consensus 130 ~~~m~~g~~-p~~eM~~~~~l~lgtfvg--MEf~Aw~aHKylMHG~LW~~H~sHH~pr~G~FE~NDlFaiifAvpAi~Li 206 (272)
.|++.+++. +-.++...+.+.+...+. .=..|++. |.++..+. .++.+.+-=.++...++|.++.-
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~a~~i-~~~~~~~~----------~~~s~~~~~~~a~y~~tPl~L~~ 114 (170)
T PF06930_consen 46 GWFVGNGEGIVKLTLASALIIAVIFYIFGGVFIMAYLI-HWMMKTFG----------GRPSYKKCLAFAAYAATPLFLGG 114 (170)
T ss_pred HHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 477777763 233443333333332222 22334343 33333321 33345555556666666665544
Q ss_pred HhhcccCCCcchhhhh--hhhhhhhhhh--HHhhhhcce
Q 024101 207 SFGFFHKGLVPGLCFG--AGLGITVFGM--AYMFVHDGL 241 (272)
Q Consensus 207 ~~G~~~~g~~p~l~fg--iGlGITlYGi--aYffVHDgL 241 (272)
.... .|.+++. ++....+|.+ .|.-|+...
T Consensus 115 i~~~-----~~~~~l~~~~~~~~~~~~~~Lly~Gv~~~~ 148 (170)
T PF06930_consen 115 IVNL-----YPSLWLTLLVGLIALIYSVYLLYLGVPIFM 148 (170)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4442 3333222 3455555543 444444433
No 38
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=27.27 E-value=72 Score=31.87 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=18.7
Q ss_pred CcchhhhhhhhhhhhhhhHHhhhhcce
Q 024101 215 LVPGLCFGAGLGITVFGMAYMFVHDGL 241 (272)
Q Consensus 215 ~~p~l~fgiGlGITlYGiaYffVHDgL 241 (272)
++..+..++-+|+....+. |+.||..
T Consensus 158 ~~~~~l~aillg~~~~~~g-~l~HDa~ 183 (485)
T PLN03199 158 FAMHIASALLLGLFFQQCG-WLAHDFL 183 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence 3334456677888888888 6999985
No 39
>PLN02498 omega-3 fatty acid desaturase
Probab=26.44 E-value=1.4e+02 Score=30.44 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=27.8
Q ss_pred hhhhhhhhhhHHhhhhcceecCcccCCcCCC------------CHHHHHHHHHHHhhhccCC
Q 024101 223 AGLGITVFGMAYMFVHDGLVHKRFPVGPIAD------------VPYFRRVAAAHQVNDQIMN 272 (272)
Q Consensus 223 iGlGITlYGiaYffVHDgLVHqRfp~~~~a~------------~pYlrrl~~AHklHH~v~~ 272 (272)
+-.|...-|+ +.+.||. -|+.|--.+.-| .|| ..-+.-|..||+..|
T Consensus 155 ~~~G~~~~gL-~vl~HDc-gHgsf~~~k~lNd~vG~ll~~~ll~py-~~Wr~sH~~HH~~Tn 213 (450)
T PLN02498 155 FAQGTMFWAL-FVLGHDC-GHGSFSNNPKLNSVVGHLLHSSILVPY-HGWRISHRTHHQNHG 213 (450)
T ss_pred HHHHHHHHHH-HHHHHhc-cccccccChHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhcCCC
Confidence 3367777666 8889997 477662211111 112 224667899998765
No 40
>PF03334 PhaG_MnhG_YufB: Na+/H+ antiporter subunit; InterPro: IPR005133 This is a family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti (Sinorhizobium meliloti), show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons. ; GO: 0005451 monovalent cation:hydrogen antiporter activity, 0015672 monovalent inorganic cation transport, 0015992 proton transport
Probab=26.05 E-value=2.3e+02 Score=21.93 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=38.0
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 107 LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (272)
Q Consensus 107 ~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~aHK 166 (272)
-.++..+++|...+.+.+.-|-. .+..-+-..+..+.+.+.+-++.-..||.+||
T Consensus 27 Ha~s~~~tlG~~lilig~~l~~~-----~~~~~~k~lli~~~~~lt~Pv~sh~iaraa~~ 81 (81)
T PF03334_consen 27 HAASKADTLGAILILIGLALYFG-----SSWVSLKLLLIILFLLLTNPVASHAIARAAYR 81 (81)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678889999888766554431 12333444577777778888899999988875
No 41
>COG4682 Predicted membrane protein [Function unknown]
Probab=25.55 E-value=42 Score=29.12 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHhhcccCCCcchh--hhhhhhhhhhhhh
Q 024101 196 IINAVPAIALLSFGFFHKGLVPGL--CFGAGLGITVFGM 232 (272)
Q Consensus 196 iifAvpAi~Li~~G~~~~g~~p~l--~fgiGlGITlYGi 232 (272)
-.-++++|+|+..|.+|.-+.... ..++.+++++||-
T Consensus 80 ~~~~lisigll~vGv~Na~la~sek~~y~vaffv~lfGa 118 (128)
T COG4682 80 QLVALISIGLLFVGVWNATLALSEKGFYGVAFFVSLFGA 118 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Confidence 346789999999998653221100 3456677777764
No 42
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=25.53 E-value=3.9e+02 Score=22.74 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 135 GGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (272)
Q Consensus 135 ~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~aHK 166 (272)
.|++++......+.+..++++|+-.=+|+.+|
T Consensus 188 ~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~ 219 (240)
T PF01925_consen 188 LGDVDWPMLLLSLILLPGAFLGAFLGAKLARK 219 (240)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999887777777788888888877776655
No 43
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=25.33 E-value=3.4e+02 Score=21.44 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (272)
Q Consensus 105 ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~ 163 (272)
.++..|..+|-+|..+.... |.-. .-++.|-+-+++|=+|+++.|=+.-||
T Consensus 22 ~f~y~a~~aSa~iG~~i~~~-------rl~a-~~~l~~~l~nlaI~igava~~~~L~~~ 72 (75)
T PF11998_consen 22 RFFYGAFGASAGIGLFIFLF-------RLIA-GPDLNEALPNLAIQIGAVALFAFLFRW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHc-CccHHHHhhhHhHHHHHHHHHHHHHHH
Confidence 35556777777666554332 1111 457779999999999999998776554
No 44
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.47 E-value=2.6e+02 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=8.3
Q ss_pred hhhhhhhhhhHHhhh
Q 024101 223 AGLGITVFGMAYMFV 237 (272)
Q Consensus 223 iGlGITlYGiaYffV 237 (272)
+|+|+.+.++.+.+.
T Consensus 147 ~glGlll~~~~~~l~ 161 (181)
T PF08006_consen 147 FGLGLLLIVITFYLT 161 (181)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666555443
No 45
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=24.06 E-value=71 Score=26.55 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=22.7
Q ss_pred hhhhh-hHHHHHHHHHhhhhhHHHHHHHhhhhh
Q 024101 99 KRSER-FTYLVAAVMSSFGITSMAVMAVYYRFW 130 (272)
Q Consensus 99 k~~er-~ty~~aa~~ss~gi~~~a~~a~y~rf~ 130 (272)
||+|- ..|++++.+.-+++.+...++.|+||-
T Consensus 16 ~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~ 48 (97)
T PF04834_consen 16 KKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCFD 48 (97)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 45555 467777777777777777788898763
No 46
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=23.86 E-value=5.4e+02 Score=23.32 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhc-----cCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQM-----EGGEVPLAEMFGTFALSVGAAVGMEFWARWA 164 (272)
Q Consensus 105 ty~~aa~~ss~gi~~~a~~a~y~rf~~~m-----~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~a 164 (272)
.-+.-+...|++.+.+++..+..-+.-.- +-++....+.-+.+++.++....+..-.+.-
T Consensus 39 ~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~llv~~~~~~~~~~~~~~ 103 (282)
T PF03824_consen 39 VGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSAVGLLVSGSFLLVIGIGNWLLLRRLRH 103 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666554433322 1234444554466777776666666666543
No 47
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=23.10 E-value=52 Score=24.62 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=23.9
Q ss_pred HHHHHHH---HhhhhhhhHHHHHHHHHhhhhh
Q 024101 90 ARVAEKL---ARKRSERFTYLVAAVMSSFGIT 118 (272)
Q Consensus 90 ~~~~~~~---~rk~~er~ty~~aa~~ss~gi~ 118 (272)
..+|+++ .-|-..|.-|=++-|+.|+|+.
T Consensus 28 ~~ia~~l~~~~~k~~~RRlYDI~NVLealgli 59 (71)
T PF02319_consen 28 NEIADKLISENVKTQRRRLYDIINVLEALGLI 59 (71)
T ss_dssp HHHHHHCHHHCCHHHCHHHHHHHHHHHHCTSE
T ss_pred HHHHHHHcccccccccchhhHHHHHHHHhCce
Confidence 5677777 5555788899999999999985
No 48
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=23.09 E-value=2.4e+02 Score=25.07 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=26.0
Q ss_pred HHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHH
Q 024101 123 MAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVG 156 (272)
Q Consensus 123 ~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvg 156 (272)
..+++|--=++..|++|-.||+-...+++++++-
T Consensus 52 ~~~l~~~q~~~~~G~~P~~~ll~g~~~~vagiLL 85 (158)
T COG3030 52 FGTLLRAQAALASGEVPGAELLDGLLLIIAGILL 85 (158)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHhHHHHHHHHHH
Confidence 4667777777878999999997777777776653
No 49
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.94 E-value=69 Score=27.24 Aligned_cols=25 Identities=24% Similarity=0.467 Sum_probs=17.3
Q ss_pred HHHHHHhhcccCCCcchhhhhhhhhhhhhhhH
Q 024101 202 AIALLSFGFFHKGLVPGLCFGAGLGITVFGMA 233 (272)
Q Consensus 202 Ai~Li~~G~~~~g~~p~l~fgiGlGITlYGia 233 (272)
.|+++.+||. +.+.+||.|.+|.|-
T Consensus 11 ~Ia~mVlGFi-------~fWPlGla~Lay~iw 35 (115)
T PF11014_consen 11 WIAAMVLGFI-------VFWPLGLALLAYMIW 35 (115)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4778888873 345688888777553
No 50
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.94 E-value=5.8e+02 Score=26.35 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=76.1
Q ss_pred hcchHHHHHHHHHh----------hhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHH--HHHHHHHHH
Q 024101 85 QISTAARVAEKLAR----------KRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEM--FGTFALSVG 152 (272)
Q Consensus 85 ~~~~~~~~~~~~~r----------k~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM--~~~~~l~lg 152 (272)
.+.++.|.-.-.+| ...+|.|=..|-+.++++.+.+.... ...++ ..+|+-.++
T Consensus 305 ~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~--------------d~~~LIny~sf~~~l~ 370 (479)
T KOG1287|consen 305 VIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIG--------------DFDQLINYVSFAYWLF 370 (479)
T ss_pred HHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHh--------------hHHHHHHHHHHHHHHH
Confidence 34445565544444 33466677777777766655554443 22333 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhh
Q 024101 153 AAVGMEFWARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGM 232 (272)
Q Consensus 153 tfvgMEf~Aw~aHKylMHG~LW~~H~sHH~pr~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGi 232 (272)
..+.|=+.=|+=+| |++.+.|+..+=.+-++|-+..+.|..+-+...- + .-.++|++|++-|+
T Consensus 371 ~~l~~~gll~lR~k--------------~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~--~-~~~~ig~~i~l~G~ 433 (479)
T KOG1287|consen 371 RGLSMAGLLWLRWK--------------HPPLPRPIKVPLFIPILFLLICIFLVVIPIISDF--P-VETLIGIGIILSGV 433 (479)
T ss_pred HHHHHHHHHHHHhh--------------CCCCCCCEeeeeehHHHHHHHHHHHhheeeeecC--C-ccchhHHHHHHHhh
Confidence 33333322222222 4556778888889999999999999988875331 1 11458999999999
Q ss_pred HHhhhhcceecCcc
Q 024101 233 AYMFVHDGLVHKRF 246 (272)
Q Consensus 233 aYffVHDgLVHqRf 246 (272)
.+.+ .++|.+-
T Consensus 434 ~~Y~---~~i~~~~ 444 (479)
T KOG1287|consen 434 PFYF---LFIHWKK 444 (479)
T ss_pred hhhe---EEEEecC
Confidence 8655 3666655
No 51
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=22.92 E-value=71 Score=29.93 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=35.1
Q ss_pred ccchhhHhhhHHHHHHHHHhhcccCCCcchhhhh----------hhhhhhhhhhHHhhhhcc
Q 024101 189 ELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFG----------AGLGITVFGMAYMFVHDG 240 (272)
Q Consensus 189 E~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fg----------iGlGITlYGiaYffVHDg 240 (272)
-=||.-++.+..+|+++=++||. + ..|+. +|||+|+-.-.|.+.|.-
T Consensus 84 vG~~~~F~~n~~vs~~Fq~iGFl---l--ty~l~tthAar~Gs~aGlGltli~~~~~~~~~~ 140 (233)
T PF10176_consen 84 VGNDFSFVWNFLVSFSFQWIGFL---L--TYCLHTTHAARYGSRAGLGLTLIKYGLIMRPST 140 (233)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH---H--HHHHhcchHhhccchhhchHHHHhhhheEeecc
Confidence 35899999999999998899973 1 12322 689999988888776654
No 52
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.67 E-value=6.6e+02 Score=28.58 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhh--h-hhhh----ccCCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 105 TYLVAAVMSSFGITSMAVMAVYY--R-FWWQ----MEGGE----VPLAEMFGTFALSVGAAVGMEFWARWAHKAL 168 (272)
Q Consensus 105 ty~~aa~~ss~gi~~~a~~a~y~--r-f~~~----m~~g~----~p~~eM~~~~~l~lgtfvgMEf~Aw~aHKyl 168 (272)
.-.++++++-..|-|=.+.|++| . =.|+ .+||+ +++..++..+++++.+++..-....+..|++
T Consensus 787 ~l~l~~l~~l~~iWsd~~~a~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l 861 (1109)
T PRK10929 787 ILTLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELAL 861 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777665 1 2476 34554 3445555556666666666556665555544
No 53
>PLN02498 omega-3 fatty acid desaturase
Probab=22.61 E-value=1.2e+02 Score=30.93 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=33.6
Q ss_pred cCCCCCCCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhh--hhhhhhHHhhhhcce
Q 024101 179 SHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLG--ITVFGMAYMFVHDGL 241 (272)
Q Consensus 179 sHH~pr~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlG--ITlYGiaYffVHDgL 241 (272)
+|=.|...-|+.||..-|+.....++.+..++ ..+++..|+. +.+||+-|+++|=-|
T Consensus 264 sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l------~~l~~~~G~~~~l~~Y~vP~lv~~~WL 322 (450)
T PLN02498 264 SHFHPDSDLFVPKERKDVITSTACWTAMAALL------VCLSFVMGPIQMLKLYGIPYWIFVMWL 322 (450)
T ss_pred cccCCCcccCChhhhhheeeehHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44477777787777777666555544333331 1122223333 778999998887654
No 54
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.34 E-value=1e+02 Score=28.76 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=31.5
Q ss_pred hhHhhhHHHHHHHHHhhcccCCCcc------hhhhhhhhhhhhhhhHHhhh
Q 024101 193 VFAIINAVPAIALLSFGFFHKGLVP------GLCFGAGLGITVFGMAYMFV 237 (272)
Q Consensus 193 lFaiifAvpAi~Li~~G~~~~g~~p------~l~fgiGlGITlYGiaYffV 237 (272)
+.+++|..|+++-=+||.+-+ ..| |+++..|+.+.+-++.|.++
T Consensus 267 i~s~iflPpTlIagiyGMNf~-~mPel~~~~Gy~~~l~~m~~~~~~~~~~f 316 (322)
T COG0598 267 IVSTIFLPPTLITGFYGMNFK-GMPELDWPYGYPIALILMLLLALLLYLYF 316 (322)
T ss_pred HHHHHHHhhHHHHcccccCCC-CCcCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 467889999988888997444 234 44666777777788887765
No 55
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.93 E-value=1.4e+02 Score=21.46 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 136 GEVPLAEMFGTFALSVGAAVGMEFWARWA 164 (272)
Q Consensus 136 g~~p~~eM~~~~~l~lgtfvgMEf~Aw~a 164 (272)
..+|++|--.+-+++..-.++.-.||||=
T Consensus 3 ~plpi~e~~i~~~~s~v~t~~~~l~awwK 31 (47)
T PF04688_consen 3 SPLPIDEEQINQLISAVFTIVTALYAWWK 31 (47)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789998666566666777778899873
No 56
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.85 E-value=2.2e+02 Score=23.01 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=24.3
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhccCCC-ccHHHH
Q 024101 107 LVAAVMSSFGITSMAVMAVYYRFWWQMEGGE-VPLAEM 143 (272)
Q Consensus 107 ~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~-~p~~eM 143 (272)
-.+.+|-.+-++.++-..|||= -+|+ .|+.+.
T Consensus 32 W~~p~m~~lmllGL~WiVvyYi-----~~~~i~pi~~l 64 (87)
T PF06781_consen 32 WYAPLMLGLMLLGLLWIVVYYI-----SGGQIPPIPDL 64 (87)
T ss_pred cHHHHHHHHHHHHHHHHhhhhc-----ccCCCCCcccc
Confidence 4677888899999999999994 4555 566655
No 57
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=21.74 E-value=4.2e+02 Score=21.15 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=12.9
Q ss_pred hccCCCccHHHHHHHHHHH
Q 024101 132 QMEGGEVPLAEMFGTFALS 150 (272)
Q Consensus 132 ~m~~g~~p~~eM~~~~~l~ 150 (272)
....|+....+++..+.++
T Consensus 250 ~~~~g~~s~g~~~~~~~~~ 268 (275)
T PF00664_consen 250 SVINGQISIGTLVAFLSLS 268 (275)
T ss_dssp -HCTTSSHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHH
Confidence 3678999998886544443
No 58
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=21.69 E-value=3.9e+02 Score=20.80 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 104 FTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKAL 168 (272)
Q Consensus 104 ~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~aHKyl 168 (272)
.-|.++.+...++..++.+.+. +.++..+...-+..+++.+..++.++...|..=..+
T Consensus 16 ~~Y~l~li~i~l~~~~~~~~~~-------~~~~~~~~~~g~~~~l~~~~~~l~~~i~~Ri~~E~~ 73 (90)
T PF14110_consen 16 VLYWLGLILIVLSGLSGIFSGF-------MAGMGFSFGGGFLGLLLGPLGFLLGIILWRIMLEFL 73 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777666666555554444 434444445556666667778888888888764444
No 59
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=20.54 E-value=1.7e+02 Score=22.02 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=22.1
Q ss_pred hhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHhh
Q 024101 193 VFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMF 236 (272)
Q Consensus 193 lFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYff 236 (272)
+.+++..+|.++.+ +|. ++ ...+..++|++++-++|=+
T Consensus 15 ~~~l~~~~P~~a~~-~~~---~~--~~a~~l~v~~s~~a~~wn~ 52 (67)
T PF05232_consen 15 VGALLISVPLIAWW-LGI---SL--WQAGALDVGLSLFAMVWNY 52 (67)
T ss_pred HHHHHHHHHHHHHH-HCC---CH--HHHHHHHHHHHHHHHHHHH
Confidence 56777888877765 442 12 2245566666666555543
No 60
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=20.40 E-value=97 Score=29.09 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=45.2
Q ss_pred CCCCCCCCccchhhHhhhHHHHHHHHHhh--cccCCCcchhhhhhhhhhhhhhhHHhhhhcceecCcccCCcCC------
Q 024101 181 HRPREGPFELNDVFAIINAVPAIALLSFG--FFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIA------ 252 (272)
Q Consensus 181 H~pr~G~FE~NDlFaiifAvpAi~Li~~G--~~~~g~~p~l~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a------ 252 (272)
|.+-++-++.|..+..+-...-.+.++.+ +.+.+++..++.++-+|.+..-.++.+.||.. |+.+--.+..
T Consensus 5 ~pei~~L~~~~~~~~~~~~~~v~~~~~~~~~l~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~-H~~~f~~~~~N~~~g~ 83 (289)
T cd03508 5 YPEIKKLFGPDPLTKWVVLGVVLLQIITAYLLRDSSWWKILLVAYFFGGTINHSLFLAIHEIS-HNLAFGKPLWNRLFGI 83 (289)
T ss_pred chHHHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhhcCChHHHHHHHH
Confidence 34445667777665533322222222222 12222332234445566677666778889974 5554221111
Q ss_pred ------CCHHHHHHHHHHHhhhccCC
Q 024101 253 ------DVPYFRRVAAAHQVNDQIMN 272 (272)
Q Consensus 253 ------~~pYlrrl~~AHklHH~v~~ 272 (272)
-.||.-.-+.-|..||+.-|
T Consensus 84 ~~~~~~g~p~~~~~r~~H~~HH~~~n 109 (289)
T cd03508 84 FANLPIGVPYSISFKKYHLEHHRYLG 109 (289)
T ss_pred HHHHHhcCChhhHHHHHHHHhccCCC
Confidence 11233234567999998644
No 61
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.13 E-value=5e+02 Score=21.40 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHhhhhhHH
Q 024101 103 RFTYLVAAVMSSFGITSM 120 (272)
Q Consensus 103 r~ty~~aa~~ss~gi~~~ 120 (272)
+.-+.++|+.-.+||++.
T Consensus 34 ~~l~~lGall~~~gii~f 51 (145)
T PF09925_consen 34 RILLYLGALLLGLGIILF 51 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
Done!