Query 024101
Match_columns 272
No_of_seqs 135 out of 200
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:13:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 86.1 0.29 9.9E-06 42.5 1.9 131 91-240 50-194 (283)
2 3j1z_P YIIP, cation efflux fam 81.1 1.2 4E-05 39.5 3.8 129 91-239 59-202 (306)
3 3llq_A Aquaporin Z 2; aquapori 23.0 77 0.0026 28.1 4.2 18 221-238 67-84 (256)
4 4gc0_A D-xylose-proton symport 16.3 5.1E+02 0.017 22.1 8.8 8 232-239 390-397 (491)
5 1q16_C Cytochrome B-NR, respir 14.0 81 0.0028 26.4 2.0 35 90-124 111-145 (225)
6 2kdr_X NS4B, P27, non-structur 13.0 1E+02 0.0034 19.8 1.8 14 108-121 7-20 (28)
7 1waz_A MERF; protein structure 13.0 1.5E+02 0.005 20.9 2.7 35 196-233 6-40 (46)
8 3rt3_C NS1, NS1B, non-structur 12.3 74 0.0025 25.3 1.2 13 121-133 26-38 (109)
9 3ixz_A Potassium-transporting 10.0 6.1E+02 0.021 26.1 7.3 60 104-166 962-1022(1034)
10 1y7u_A Acyl-COA hydrolase; str 9.9 2.8E+02 0.0096 21.7 3.9 50 54-103 117-166 (174)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=86.06 E-value=0.29 Score=42.48 Aligned_cols=131 Identities=14% Similarity=0.150 Sum_probs=70.7
Q ss_pred HHHHHHHhhh-hhhhHH------HHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 91 RVAEKLARKR-SERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (272)
Q Consensus 91 ~~~~~~~rk~-~er~ty------~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~ 163 (272)
-++-|+++|+ .+|.+| .+++...++.+..+++..+|-=+..-+++.+++...+ .+.+.+.+.+..++.+|+
T Consensus 50 l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~~--~l~v~~~s~~v~~~~~~~ 127 (283)
T 3h90_A 50 LLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGV--GVIVTIVALICTIILVSF 127 (283)
T ss_dssp HHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCCCC--CTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchH--HHHHHHHHHHHHHHHHHH
Confidence 4667777776 344433 3566666777777766665543333345544433221 233455566777888888
Q ss_pred HHHH-------HHHhhhhhhhccCCCCCCCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHhh
Q 024101 164 AHKA-------LWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMF 236 (272)
Q Consensus 164 aHKy-------lMHG~LW~~H~sHH~pr~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYff 236 (272)
.+|. .+.+-.|+ -++|++.-+-.+.++++..+|+ .+.+-..++.+++.+...+|-+
T Consensus 128 ~~~~~~~~~s~~l~a~~~h-------------~~~D~~~s~~vli~~~~~~~g~----~~~D~i~~i~ia~~i~~~~~~l 190 (283)
T 3h90_A 128 QRWVVRRTQSQAVRADMLH-------------YQSDVMMNGAILLALGLSWYGW----HRADALFALGIGIYILYSALRM 190 (283)
T ss_dssp HHHHHHHSCCHHHHHHHHH-------------HHHHHCCCSCSCSSSCSCSTTS----CCSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 7764 12222222 1678877666555544433442 1222344555666666666666
Q ss_pred hhcc
Q 024101 237 VHDG 240 (272)
Q Consensus 237 VHDg 240 (272)
+-|-
T Consensus 191 ~~~s 194 (283)
T 3h90_A 191 GYEA 194 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=81.14 E-value=1.2 Score=39.53 Aligned_cols=129 Identities=19% Similarity=0.094 Sum_probs=69.7
Q ss_pred HHHHHHHhhhh-h-------hhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 91 RVAEKLARKRS-E-------RFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (272)
Q Consensus 91 ~~~~~~~rk~~-e-------r~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw 162 (272)
-++-|+++|+. + |..| ++|+..++.+..+++..+|.=...-+++.++.-..+ .+.+.+++++.++...+
T Consensus 59 l~~~~~s~k~~d~~~pyG~~R~E~-l~al~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~~--~~~v~~~~~~~~~~~~~ 135 (306)
T 3j1z_P 59 FIAIRYAIVPADHDHRYGHGKAEP-LAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATL--GVVVSVVAIVLTLALVL 135 (306)
T ss_dssp HHHHHHHTSCCCCTTSSCCTTHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTTC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHhhhheecCCCcccccc--chhhhhhHhhhhHHHHH
Confidence 46677777664 3 3444 456667777777777776654444455554433333 23445556677777777
Q ss_pred HHHHHH-------HHhhhhhhhccCCCCCCCCCccchhhHhhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhHHh
Q 024101 163 WAHKAL-------WHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYM 235 (272)
Q Consensus 163 ~aHKyl-------MHG~LW~~H~sHH~pr~G~FE~NDlFaiifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGiaYf 235 (272)
+.++.- +.+-.| --+||++.=+.++.++++..+|+ ++.+-..++.+|+.+-..+|-
T Consensus 136 ~~~~~~~~~~s~~l~a~~~-------------h~~~D~l~s~~vli~~~~~~~g~----~~~Dpi~ai~Ia~~I~~~~~~ 198 (306)
T 3j1z_P 136 LQKRALAATNSTVVEADSL-------------HYKSDLFLNAAVLLALVLSQYGW----WWADGLFAVLIACYIGQQAFD 198 (306)
T ss_dssp HHHHHHTTSCCHHHHHHHH-------------HHHHHTTCCTTCCCTTSSCCSSS----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHH-------------hhcchhhhhhHHHHHHHHHHhCc----chhhhHHHHHHHHHHHHHHHH
Confidence 665432 111111 12578877666666555544453 232334455555555555555
Q ss_pred hhhc
Q 024101 236 FVHD 239 (272)
Q Consensus 236 fVHD 239 (272)
++-|
T Consensus 199 l~~~ 202 (306)
T 3j1z_P 199 LGYR 202 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=23.04 E-value=77 Score=28.10 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=11.5
Q ss_pred hhhhhhhhhhhhHHhhhh
Q 024101 221 FGAGLGITVFGMAYMFVH 238 (272)
Q Consensus 221 fgiGlGITlYGiaYffVH 238 (272)
..+|.|+++.-++|.+-|
T Consensus 67 iala~Glav~~~i~~~g~ 84 (256)
T 3llq_A 67 VALAFGLTVLTMAYAVGG 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheeec
Confidence 345566666667777655
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=16.31 E-value=5.1e+02 Score=22.13 Aligned_cols=8 Identities=0% Similarity=0.588 Sum_probs=3.1
Q ss_pred hHHhhhhc
Q 024101 232 MAYMFVHD 239 (272)
Q Consensus 232 iaYffVHD 239 (272)
+.|.+.=|
T Consensus 390 ~~~~~~~E 397 (491)
T 4gc0_A 390 VCWVLLSE 397 (491)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33433333
No 5
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=13.99 E-value=81 Score=26.37 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHH
Q 024101 90 ARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMA 124 (272)
Q Consensus 90 ~~~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a 124 (272)
+|...+..|..|....|++-.+...+++|.+..-+
T Consensus 111 RR~~~~~~R~~s~~~d~~il~ll~~i~~tGl~~~~ 145 (225)
T 1q16_C 111 RRLFSPRVRATTTGADILILSLLVIQCALGLLTIP 145 (225)
T ss_dssp HHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccchhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445554555667776666666666655444
No 6
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=13.03 E-value=1e+02 Score=19.76 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=12.0
Q ss_pred HHHHHHhhhhhHHH
Q 024101 108 VAAVMSSFGITSMA 121 (272)
Q Consensus 108 ~aa~~ss~gi~~~a 121 (272)
|.|++||+-|||+.
T Consensus 7 VtaiLssLTvTsLl 20 (28)
T 2kdr_X 7 VTAILSSLTVTQLL 20 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67899999999874
No 7
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=12.97 E-value=1.5e+02 Score=20.91 Aligned_cols=35 Identities=26% Similarity=0.567 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHhhcccCCCcchhhhhhhhhhhhhhhH
Q 024101 196 IINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMA 233 (272)
Q Consensus 196 iifAvpAi~Li~~G~~~~g~~p~l~fgiGlGITlYGia 233 (272)
++|++...+-. .|..+--+.|.+.+. +|+|+|++-
T Consensus 6 iL~g~vGLsa~-vgyLDyVLlPaLa~F--i~lt~ya~~ 40 (46)
T 1waz_A 6 ILLGVVGLSAL-TGYLDYVLLPALAIF--IGLTIYAIQ 40 (46)
T ss_dssp HHHHHHHHHHC-CSCCCCCSCCHHHHH--HHHHHHHHH
T ss_pred hhHHHhhHHHH-HHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 44444443332 455444456766655 788999863
No 8
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Probab=12.26 E-value=74 Score=25.33 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=10.7
Q ss_pred HHHHHhhhhhhhc
Q 024101 121 AVMAVYYRFWWQM 133 (272)
Q Consensus 121 a~~a~y~rf~~~m 133 (272)
.++-+|-||+||-
T Consensus 26 gil~cy~r~swq~ 38 (109)
T 3rt3_C 26 GILECYERFSWQR 38 (109)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhcc
Confidence 3567899999995
No 9
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=10.01 E-value=6.1e+02 Score=26.09 Aligned_cols=60 Identities=12% Similarity=-0.083 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhhhhhhh-ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 104 FTYLVAAVMSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (272)
Q Consensus 104 ~ty~~aa~~ss~gi~~~a~~a~y~rf~~~-m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~aHK 166 (272)
--|++.|+..++.+..+ .+|.=+.-. +.-..+++.+.+..+++.+..++..|..-|+..|
T Consensus 962 N~~l~~~~~~~~~l~~~---~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~ 1022 (1034)
T 3ixz_A 962 NRILVIAIVFQVCIGCF---LCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRC 1022 (1034)
T ss_pred cHHHHHHHHHHHHHHHH---HHHhhhHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778887777765543 344432211 2235677888888888888888999998776554
No 10
>1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein structure initiative, PSI, midwest center for structural GE MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP: d.38.1.1
Probab=9.88 E-value=2.8e+02 Score=21.69 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred CceeEEEEeccccccccccccchhhhhhhhhhcchHHHHHHHHHhhhhhh
Q 024101 54 NSFTVCFVLEEKKQSTQIETFTEEEEEESGTQISTAARVAEKLARKRSER 103 (272)
Q Consensus 54 ~~~~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~er 103 (272)
+...+++.++++..+..+....-+.+++...-..+..|...|+++++...
T Consensus 117 ~a~~t~V~vd~~~kp~~iP~~~p~t~~e~~~~~~a~~r~~~r~~~~~~~~ 166 (174)
T 1y7u_A 117 TSFVTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKAESK 166 (174)
T ss_dssp EEEEEEEEECTTSCBCCCCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Done!