Query 024101
Match_columns 272
No_of_seqs 135 out of 200
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 18:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024101.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024101hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bnma1 a.35.1.3 (A:6-76) Hydr 50.4 6.4 0.00046 27.8 3.3 58 90-155 4-62 (71)
2 d1pv7a_ f.38.1.2 (A:) Lactose 41.9 60 0.0044 23.8 10.6 23 145-167 264-286 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 30.7 1.1E+02 0.0078 23.4 11.9 33 134-166 278-311 (447)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 19.3 62 0.0045 27.7 5.0 61 104-167 408-469 (472)
5 d1vlaa_ d.227.1.2 (A:) Hypothe 15.0 47 0.0034 23.6 2.7 20 105-124 46-65 (144)
6 d1uspa_ d.227.1.1 (A:) Organic 13.9 53 0.0039 23.0 2.7 19 105-123 46-64 (137)
7 d1xeqa1 a.16.1.1 (A:15-103) N- 13.5 31 0.0022 25.0 1.2 13 121-133 12-24 (89)
8 d2onfa1 d.227.1.1 (A:1-139) Hy 12.7 60 0.0044 22.9 2.7 20 105-124 44-63 (139)
9 d1y5ic1 f.21.3.1 (C:1-225) Res 10.8 2E+02 0.015 22.1 5.6 15 193-207 182-196 (225)
10 d1y7ua1 d.38.1.1 (A:8-171) Acy 10.0 1.5E+02 0.011 22.0 4.4 11 90-100 143-153 (164)
No 1
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=50.44 E-value=6.4 Score=27.75 Aligned_cols=58 Identities=36% Similarity=0.559 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhc-cCCCccHHHHHHHHHHHHHHHH
Q 024101 90 ARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQM-EGGEVPLAEMFGTFALSVGAAV 155 (272)
Q Consensus 90 ~~~~~~~~rk~~er~ty~~aa~~ss~gi~~~a~~a~y~rf~~~m-~~g~~p~~eM~~~~~l~lgtfv 155 (272)
.-.||++..++ |+...--||++|-+|-|--.+.| |.- ||||..+++. +-++=++|+-+
T Consensus 4 tgfae~lk~rr-eqvkmdhaalas~lgetpetvaa------wengeggeltltql-g~ia~~lgtsi 62 (71)
T d2bnma1 4 TGFAELLKDRR-EQVKMDHAALASLLGETPETVAA------WENGEGGELTLTQL-GRIAHVLGTSI 62 (71)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHH------HHTTTCTTCBHHHH-HHHHHHTTSCT
T ss_pred hhHHHHHHHHH-HHHhhhHHHHHHHHcCCchHHHH------hhcCCCceeeHHHH-HHHHHHHcccc
Confidence 35667765543 66666779999999999877765 775 7999998874 44555555443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=41.94 E-value=60 Score=23.83 Aligned_cols=23 Identities=17% Similarity=-0.164 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024101 145 GTFALSVGAAVGMEFWARWAHKA 167 (272)
Q Consensus 145 ~~~~l~lgtfvgMEf~Aw~aHKy 167 (272)
......++..++.=...|+..|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINRI 286 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccccccccccchhhhhhhhccc
Confidence 33444455566666666666553
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=30.66 E-value=1.1e+02 Score=23.39 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=18.2
Q ss_pred cCCCccHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 024101 134 EGGEVPLAEM-FGTFALSVGAAVGMEFWARWAHK 166 (272)
Q Consensus 134 ~~g~~p~~eM-~~~~~l~lgtfvgMEf~Aw~aHK 166 (272)
+....+..+. ....+..++..++.=...|+.-|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 278 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcchhhhhhhhhhhhhhhhh
Confidence 3344555555 44444455566666666666554
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=19.28 E-value=62 Score=27.69 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhhhhhhh-ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024101 104 FTYLVAAVMSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (272)
Q Consensus 104 ~ty~~aa~~ss~gi~~~a~~a~y~rf~~~-m~~g~~p~~eM~~~~~l~lgtfvgMEf~Aw~aHKy 167 (272)
-.|++.|+..++. +.+..+|.-+.=. +.--.+|+.+-+..+.+.+..++..|.+-|+.-||
T Consensus 408 N~~l~~av~i~~~---l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~~~~~~~~~El~K~~~R~~ 469 (472)
T d1wpga4 408 NIWLLGSICLSMS---LHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 469 (472)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHSTTTHHHHTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHH---HHHHHHHhhHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3466666554443 4555677664321 23357888888888999999999999997766554
No 5
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=14.99 E-value=47 Score=23.56 Aligned_cols=20 Identities=10% Similarity=0.419 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 024101 105 TYLVAAVMSSFGITSMAVMA 124 (272)
Q Consensus 105 ty~~aa~~ss~gi~~~a~~a 124 (272)
-|+.+|++||++++..+++.
T Consensus 46 elllaala~C~~~~~~~~a~ 65 (144)
T d1vlaa_ 46 ELVLTGLMGCTGMDVVSILR 65 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 58999999999988777664
No 6
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=13.90 E-value=53 Score=22.98 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhhHHHHH
Q 024101 105 TYLVAAVMSSFGITSMAVM 123 (272)
Q Consensus 105 ty~~aa~~ss~gi~~~a~~ 123 (272)
.|+.||+.||++++...++
T Consensus 46 elllaAlasC~~~t~~~~a 64 (137)
T d1uspa_ 46 QLFAAGYAACFQGALGVVS 64 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999988766554
No 7
>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza B virus [TaxId: 11520]}
Probab=13.52 E-value=31 Score=24.96 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=10.8
Q ss_pred HHHHHhhhhhhhc
Q 024101 121 AVMAVYYRFWWQM 133 (272)
Q Consensus 121 a~~a~y~rf~~~m 133 (272)
.++-+|-||+||-
T Consensus 12 gil~cy~r~swq~ 24 (89)
T d1xeqa1 12 GILECYERFSWQR 24 (89)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhcc
Confidence 4677899999995
No 8
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=12.65 E-value=60 Score=22.87 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 024101 105 TYLVAAVMSSFGITSMAVMA 124 (272)
Q Consensus 105 ty~~aa~~ss~gi~~~a~~a 124 (272)
-|+.||++||++++...++.
T Consensus 44 elllaala~C~~~~~~~~a~ 63 (139)
T d2onfa1 44 TLFPSVLASCLLTTFLEFKD 63 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988776654
No 9
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=10.78 E-value=2e+02 Score=22.14 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=6.1
Q ss_pred hhHhhhHHHHHHHHH
Q 024101 193 VFAIINAVPAIALLS 207 (272)
Q Consensus 193 lFaiifAvpAi~Li~ 207 (272)
.+.-+-.+.+.+++.
T Consensus 182 ~~~~~H~~~~~~fl~ 196 (225)
T d1y5ic1 182 FIFRLHLVLGMTLFL 196 (225)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 10
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=10.04 E-value=1.5e+02 Score=21.97 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=5.2
Q ss_pred HHHHHHHHhhh
Q 024101 90 ARVAEKLARKR 100 (272)
Q Consensus 90 ~~~~~~~~rk~ 100 (272)
.|..+|..|++
T Consensus 143 ~r~~~R~~r~~ 153 (164)
T d1y7ua1 143 LRAEQRHIRKA 153 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445554444
Done!