Query 024102
Match_columns 272
No_of_seqs 284 out of 937
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hst_A Histone H5; chromosomal 99.9 5E-23 1.7E-27 161.1 8.0 74 113-186 3-81 (90)
2 1uss_A Histone H1; DNA binding 99.9 7.4E-23 2.5E-27 159.3 8.7 74 113-186 3-83 (88)
3 1uhm_A Histone H1, histone HHO 99.9 8E-23 2.7E-27 155.6 7.3 70 115-184 2-77 (78)
4 1ust_A Histone H1; DNA binding 99.9 3.6E-22 1.2E-26 157.0 6.1 73 113-185 3-81 (93)
5 2rqp_A Heterochromatin protein 99.8 3.5E-22 1.2E-26 155.2 2.9 74 113-186 5-85 (88)
6 1ghc_A GH1; chromosomal protei 99.8 9.6E-21 3.3E-25 142.6 0.6 67 116-183 2-74 (75)
7 2lso_A Histone H1X; structural 99.6 5.9E-20 2E-24 141.6 0.0 68 118-185 6-79 (83)
8 1x58_A Hypothetical protein 49 99.8 8E-19 2.7E-23 128.6 5.9 54 3-60 6-59 (62)
9 2aje_A Telomere repeat-binding 99.7 3E-18 1E-22 137.6 7.9 59 2-62 10-68 (105)
10 3sjm_A Telomeric repeat-bindin 99.7 8.4E-18 2.9E-22 123.5 5.7 54 3-60 9-62 (64)
11 2roh_A RTBP1, telomere binding 99.7 6E-18 2E-22 139.1 5.2 59 2-62 28-86 (122)
12 2ckx_A NGTRF1, telomere bindin 99.7 5.7E-18 2E-22 130.7 4.7 54 6-61 1-54 (83)
13 2juh_A Telomere binding protei 99.7 9.5E-18 3.2E-22 137.8 4.6 58 2-61 14-71 (121)
14 1w0t_A Telomeric repeat bindin 99.6 2.8E-16 9.5E-21 110.6 5.5 52 4-59 1-52 (53)
15 1ity_A TRF1; helix-turn-helix, 99.6 1.1E-15 3.6E-20 113.0 6.4 56 2-61 7-62 (69)
16 1guu_A C-MYB, MYB proto-oncoge 99.5 1E-14 3.5E-19 101.8 6.0 50 4-59 2-51 (52)
17 1gvd_A MYB proto-oncogene prot 99.5 2.4E-14 8.4E-19 100.0 6.3 50 4-59 2-51 (52)
18 2d9a_A B-MYB, MYB-related prot 99.5 2.7E-14 9.1E-19 102.5 5.7 54 2-61 5-58 (60)
19 2dim_A Cell division cycle 5-l 99.4 1.4E-13 4.6E-18 101.8 6.3 54 2-61 6-59 (70)
20 1x41_A Transcriptional adaptor 99.4 2.2E-13 7.4E-18 98.2 5.2 53 2-60 5-57 (60)
21 2elk_A SPCC24B10.08C protein; 99.4 3.3E-13 1.1E-17 96.8 4.7 48 4-57 8-56 (58)
22 1gv2_A C-MYB, MYB proto-oncoge 99.3 5.8E-12 2E-16 99.1 7.0 51 3-59 2-52 (105)
23 2yum_A ZZZ3 protein, zinc fing 99.3 3.8E-12 1.3E-16 95.0 5.1 53 3-61 6-63 (75)
24 2k9n_A MYB24; R2R3 domain, DNA 99.3 5E-12 1.7E-16 100.2 5.8 50 5-60 1-50 (107)
25 2cu7_A KIAA1915 protein; nucle 99.2 5.5E-12 1.9E-16 93.8 5.2 52 3-61 7-58 (72)
26 3zqc_A MYB3; transcription-DNA 99.2 9.7E-12 3.3E-16 101.8 7.0 50 5-60 2-51 (131)
27 2llk_A Cyclin-D-binding MYB-li 99.2 6.8E-12 2.3E-16 94.5 4.7 49 3-59 21-69 (73)
28 2din_A Cell division cycle 5-l 99.2 5.7E-12 1.9E-16 92.0 4.2 53 3-63 7-59 (66)
29 3osg_A MYB21; transcription-DN 99.2 1.4E-11 4.6E-16 100.5 6.8 52 2-60 8-59 (126)
30 1h8a_C AMV V-MYB, MYB transfor 99.2 1.9E-11 6.4E-16 99.5 6.2 51 3-59 25-75 (128)
31 2yus_A SWI/SNF-related matrix- 99.1 2.4E-11 8.3E-16 92.5 3.9 47 4-57 17-63 (79)
32 3zqc_A MYB3; transcription-DNA 99.1 1.2E-10 4.2E-15 95.3 8.2 61 3-70 52-112 (131)
33 1gv2_A C-MYB, MYB proto-oncoge 99.1 1.2E-10 4.2E-15 91.4 6.4 50 3-59 54-103 (105)
34 1h89_C C-MYB, MYB proto-oncoge 99.1 1.9E-11 6.5E-16 102.8 1.4 54 1-60 1-55 (159)
35 3osg_A MYB21; transcription-DN 99.0 1.8E-10 6.1E-15 93.8 6.0 52 3-61 60-111 (126)
36 2k9n_A MYB24; R2R3 domain, DNA 99.0 1.6E-10 5.5E-15 91.5 4.6 51 3-60 51-101 (107)
37 1h89_C C-MYB, MYB proto-oncoge 99.0 3.5E-10 1.2E-14 95.0 6.9 51 3-59 56-106 (159)
38 2cqr_A RSGI RUH-043, DNAJ homo 99.0 1.8E-10 6.1E-15 86.7 4.3 52 3-60 16-70 (73)
39 1h8a_C AMV V-MYB, MYB transfor 99.0 4.4E-10 1.5E-14 91.4 6.2 50 3-59 77-126 (128)
40 2ltp_A Nuclear receptor corepr 98.5 5.4E-11 1.8E-15 92.2 0.0 51 3-60 14-64 (89)
41 2cjj_A Radialis; plant develop 98.8 5E-09 1.7E-13 82.2 4.6 51 4-60 7-60 (93)
42 1ign_A Protein (RAP1); RAP1,ye 98.7 9.3E-09 3.2E-13 93.0 5.3 53 3-61 6-63 (246)
43 2eqr_A N-COR1, N-COR, nuclear 98.5 2.1E-07 7.2E-12 67.0 5.7 50 3-59 10-59 (61)
44 2cqq_A RSGI RUH-037, DNAJ homo 98.4 2.7E-07 9.2E-12 69.1 4.1 50 3-59 6-58 (72)
45 3hm5_A DNA methyltransferase 1 98.1 3.8E-06 1.3E-10 65.9 5.1 53 6-60 31-83 (93)
46 1wgx_A KIAA1903 protein; MYB D 98.0 8.6E-06 2.9E-10 61.2 5.8 50 5-60 8-60 (73)
47 4b4c_A Chromodomain-helicase-D 97.9 1.7E-05 5.8E-10 68.7 7.1 55 5-59 134-196 (211)
48 2iw5_B Protein corest, REST co 97.9 8E-06 2.7E-10 73.3 4.9 51 3-60 131-181 (235)
49 1fex_A TRF2-interacting telome 97.8 1.7E-05 6E-10 57.0 4.3 49 5-58 2-58 (59)
50 2xb0_X Chromo domain-containin 97.4 8.7E-05 3E-09 68.0 3.8 32 7-38 170-201 (270)
51 2yqk_A Arginine-glutamic acid 97.4 0.0004 1.4E-08 50.2 6.2 51 4-60 8-58 (63)
52 4iej_A DNA methyltransferase 1 97.3 0.00023 7.9E-09 55.8 5.1 52 6-59 31-82 (93)
53 2crg_A Metastasis associated p 97.2 0.0011 3.9E-08 48.8 7.3 53 3-61 6-58 (70)
54 1ofc_X ISWI protein; nuclear p 97.1 0.00021 7.3E-09 66.5 3.5 57 3-59 210-275 (304)
55 4eef_G F-HB80.4, designed hema 96.9 0.00033 1.1E-08 52.7 2.0 43 6-54 21-66 (74)
56 2ebi_A DNA binding protein GT- 96.8 0.00026 8.9E-09 53.5 0.6 55 4-60 3-66 (86)
57 2xag_B REST corepressor 1; ami 96.7 0.0014 4.7E-08 64.5 4.9 49 4-59 379-427 (482)
58 4a69_C Nuclear receptor corepr 96.5 0.0043 1.5E-07 48.2 5.8 47 5-58 43-89 (94)
59 2y9y_A Imitation switch protei 96.2 0.0025 8.4E-08 60.9 3.4 57 4-60 227-292 (374)
60 1ug2_A 2610100B20RIK gene prod 95.4 0.016 5.4E-07 45.3 4.5 56 2-63 30-87 (95)
61 2c6y_A Forkhead box protein K2 94.7 0.11 3.8E-06 41.6 7.6 61 113-177 14-78 (111)
62 2lr8_A CAsp8-associated protei 93.7 0.0058 2E-07 45.4 0.0 52 3-61 12-65 (70)
63 2a07_F Forkhead box protein P2 94.1 0.14 4.8E-06 39.8 6.9 57 116-176 4-64 (93)
64 4b4c_A Chromodomain-helicase-D 93.5 0.058 2E-06 46.3 4.1 51 4-58 6-58 (211)
65 1irz_A ARR10-B; helix-turn-hel 93.4 0.15 5E-06 37.2 5.4 49 2-54 4-54 (64)
66 1ign_A Protein (RAP1); RAP1,ye 93.2 0.086 3E-06 47.6 4.8 51 4-60 93-200 (246)
67 1vtn_C HNF-3/FORK head DNA-rec 93.2 0.18 6.1E-06 39.8 6.1 58 115-176 3-64 (102)
68 2hfh_A Genesis, HFH-2; HNF-3 h 93.1 0.25 8.5E-06 39.5 6.8 58 115-176 3-64 (109)
69 3g73_A Forkhead box protein M1 92.6 0.24 8.3E-06 41.3 6.4 64 109-176 12-80 (142)
70 2hdc_A Protein (transcription 92.4 0.21 7.1E-06 39.1 5.4 57 116-176 3-63 (97)
71 1kq8_A HFH-1, hepatocyte nucle 91.4 0.21 7.3E-06 39.2 4.5 57 116-176 3-63 (100)
72 3bpy_A FORK head domain, forkh 89.8 0.44 1.5E-05 36.3 4.8 58 116-177 6-72 (85)
73 3l2c_A Forkhead box protein O4 89.7 0.43 1.5E-05 38.0 4.9 60 114-177 23-91 (110)
74 3coa_C Forkhead box protein O1 89.5 0.81 2.8E-05 36.9 6.4 58 116-177 12-78 (117)
75 2xb0_X Chromo domain-containin 88.1 0.84 2.9E-05 41.6 6.3 53 4-60 2-56 (270)
76 1e17_A AFX; DNA binding domain 82.9 1.5 5.2E-05 36.8 4.9 58 116-177 41-107 (150)
77 2xag_B REST corepressor 1; ami 79.6 0.37 1.3E-05 47.4 0.0 43 6-55 190-232 (482)
78 1ofc_X ISWI protein; nuclear p 76.8 3.4 0.00012 38.2 5.6 47 6-58 111-157 (304)
79 1qgp_A Protein (double strande 64.7 9.5 0.00033 27.7 4.7 58 120-184 15-75 (77)
80 1r7j_A Conserved hypothetical 60.2 13 0.00044 28.0 4.8 57 119-184 5-61 (95)
81 2kpm_A Uncharacterized protein 60.0 11 0.00037 29.7 4.4 33 118-150 20-53 (105)
82 1sfu_A 34L protein; protein/Z- 54.9 17 0.00057 27.1 4.5 51 121-178 14-64 (75)
83 1psm_A SPAM-H1; polymorphic an 53.9 0.95 3.2E-05 29.4 -2.2 24 230-253 12-35 (38)
84 1qbj_A Protein (double-strande 49.4 37 0.0013 24.9 5.7 58 121-185 12-72 (81)
85 2kzv_A Uncharacterized protein 47.5 53 0.0018 24.9 6.4 47 119-165 8-58 (92)
86 2lnb_A Z-DNA-binding protein 1 46.4 32 0.0011 25.9 4.9 55 120-183 20-75 (80)
87 3fbl_A Putative uncharacterize 46.0 19 0.00065 26.4 3.5 28 123-150 52-82 (82)
88 1y0u_A Arsenical resistance op 44.6 33 0.0011 24.8 4.8 29 157-185 57-85 (96)
89 1ldd_A APC2WHB, anaphase promo 38.5 19 0.00064 26.6 2.5 26 158-183 48-74 (74)
90 2heo_A Z-DNA binding protein 1 38.5 48 0.0017 22.9 4.6 55 120-183 11-66 (67)
91 1tbx_A ORF F-93, hypothetical 38.1 87 0.003 22.4 6.2 51 121-177 10-60 (99)
92 1uxc_A FRUR (1-57), fructose r 37.0 22 0.00074 25.0 2.6 40 128-167 3-45 (65)
93 1p6r_A Penicillinase repressor 33.4 1.1E+02 0.0037 21.3 5.9 52 120-177 10-61 (82)
94 1k4u_P Phagocyte NADPH oxidase 32.9 13 0.00044 23.5 0.7 10 262-271 13-22 (32)
95 2x4h_A Hypothetical protein SS 31.2 62 0.0021 24.5 4.6 56 121-183 15-71 (139)
96 3jth_A Transcription activator 28.3 84 0.0029 22.5 4.7 40 130-177 31-70 (98)
97 3cuo_A Uncharacterized HTH-typ 27.0 72 0.0025 22.4 4.1 39 132-177 34-72 (99)
98 2fu4_A Ferric uptake regulatio 26.5 1.4E+02 0.0047 20.7 5.5 53 121-177 19-72 (83)
99 2jt1_A PEFI protein; solution 24.2 1.8E+02 0.006 21.0 5.7 22 158-179 39-60 (77)
100 1oyi_A Double-stranded RNA-bin 24.0 59 0.002 24.3 3.1 49 122-178 17-65 (82)
101 1mkm_A ICLR transcriptional re 24.0 94 0.0032 26.5 4.9 53 124-185 13-66 (249)
102 2juh_A Telomere binding protei 22.7 33 0.0011 27.5 1.5 24 7-31 81-104 (121)
103 2l8n_A Transcriptional repress 21.9 36 0.0012 24.0 1.5 40 128-167 12-51 (67)
104 2v9v_A Selenocysteine-specific 21.3 1.8E+02 0.0061 22.0 5.6 60 119-183 63-129 (135)
105 3tdu_C Cullin-1, CUL-1; E2:E3, 21.2 96 0.0033 22.7 3.7 41 119-177 27-67 (77)
No 1
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=99.88 E-value=5e-23 Score=161.08 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeecc-----ccccCCCC
Q 024102 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRN-----CYKIRKET 186 (272)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK~-----sykl~~~~ 186 (272)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|+++++|+.+|+.+|++||++|.|+|++| +|||++..
T Consensus 3 ~~~~hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl~~~~ 81 (90)
T 1hst_A 3 RSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSD 81 (90)
T ss_dssp ---CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC--
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeeecCCCccceeecCCCc
Confidence 356899999999999999999999999999999999999977899999999999999999999998 99998754
No 2
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=99.88 E-value=7.4e-23 Score=159.32 Aligned_cols=74 Identities=22% Similarity=0.469 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCC----CcchHHHHHHHHHhhhhcCceeeecc---ccccCCC
Q 024102 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEA----PPNFRRLLSSRLRRLVSQGKLEKVRN---CYKIRKE 185 (272)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v----~~n~~~~L~~~LKrlV~~GkLvkvK~---sykl~~~ 185 (272)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|++ |++|+.+|+.+||+||++|.|+|++| +|||++.
T Consensus 3 ~~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KgasGsfkl~~k 82 (88)
T 1uss_A 3 SSPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKK 82 (88)
T ss_dssp TCCSSCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBEECCS
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEeccCCCCceecCcc
Confidence 3568999999999999999999999999999999999965 58999999999999999999999998 9999864
Q ss_pred C
Q 024102 186 T 186 (272)
Q Consensus 186 ~ 186 (272)
.
T Consensus 83 ~ 83 (88)
T 1uss_A 83 K 83 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.87 E-value=8e-23 Score=155.62 Aligned_cols=70 Identities=26% Similarity=0.498 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCC--C-cchHHHHHHHHHhhhhcCceeeec---cccccCC
Q 024102 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEA--P-PNFRRLLSSRLRRLVSQGKLEKVR---NCYKIRK 184 (272)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--~-~n~~~~L~~~LKrlV~~GkLvkvK---~sykl~~ 184 (272)
.+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+||+||++|.|+|+| |+|||++
T Consensus 2 ~~hP~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KGasgsfkl~~ 77 (78)
T 1uhm_A 2 ASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAK 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCcceecCC
Confidence 47999999999999999999999999999999999975 5 799999999999999999999976 5999975
No 4
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.85 E-value=3.6e-22 Score=157.05 Aligned_cols=73 Identities=25% Similarity=0.492 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCC--C-cchHHHHHHHHHhhhhcCceeeec---cccccCCC
Q 024102 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEA--P-PNFRRLLSSRLRRLVSQGKLEKVR---NCYKIRKE 185 (272)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--~-~n~~~~L~~~LKrlV~~GkLvkvK---~sykl~~~ 185 (272)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+|++||++|.|+|++ |+|||+..
T Consensus 3 k~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KGasgsfKL~~k 81 (93)
T 1ust_A 3 EEASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKK 81 (93)
T ss_dssp CSSCCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEEECSC
T ss_pred CCCCCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCceeeCCCC
Confidence 3567999999999999999999999999999999999965 6 799999999999999999999976 69999864
No 5
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-22 Score=155.24 Aligned_cols=74 Identities=22% Similarity=0.382 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC-C-CcchHHHHHHHHHhhhhcCceeeecc-----ccccCCC
Q 024102 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE-A-PPNFRRLLSSRLRRLVSQGKLEKVRN-----CYKIRKE 185 (272)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-v-~~n~~~~L~~~LKrlV~~GkLvkvK~-----sykl~~~ 185 (272)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|. + +++|+.+|+.+|+++|++|.|+|++| +|||++.
T Consensus 5 ~~~~hp~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~Kg~GasGsfkl~~~ 84 (88)
T 2rqp_A 5 ASSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQK 84 (88)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCSSTTTSSCCTTT
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEeecCCCCcceeecccc
Confidence 356899999999999999999999999999999999997 4 57899999999999999999999998 9999864
Q ss_pred C
Q 024102 186 T 186 (272)
Q Consensus 186 ~ 186 (272)
.
T Consensus 85 ~ 85 (88)
T 2rqp_A 85 S 85 (88)
T ss_dssp T
T ss_pred c
Confidence 3
No 6
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=99.79 E-value=9.6e-21 Score=142.57 Aligned_cols=67 Identities=21% Similarity=0.414 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHh-cCCCcchHHHHHHHHHhhhhcCceeeecc-----ccccC
Q 024102 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEER-QEAPPNFRRLLSSRLRRLVSQGKLEKVRN-----CYKIR 183 (272)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~-y~v~~n~~~~L~~~LKrlV~~GkLvkvK~-----sykl~ 183 (272)
+||+|.+||+|||..|+||+|||++||++||+++ |.++ +++.+|+.+|++||++|.|+|++| +|||+
T Consensus 2 ~hP~y~~mI~~AI~alker~GsS~~AI~Kyi~~~~~~~~-~~~~~l~~aLk~~v~~G~l~~~kg~gasGsfkl~ 74 (75)
T 1ghc_A 2 AGPSVTELITKAVSASKERKGLSLAALKKALAAGGYDVE-KNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLS 74 (75)
T ss_dssp CSSSHHHHHHHHHHHCSSSSCCTTSSGGGSSSSSSCCSS-SSHHHHHHHTTTHHHHTSSCCCCCSTTSCCCCSC
T ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHccCCch-hHHHHHHHHHHHHHhcCCeEeccCCCCccccccC
Confidence 6999999999999999999999999999999999 6665 579999999999999999999998 99986
No 7
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=99.61 E-value=5.9e-20 Score=141.63 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC-CCcchHHHHHHHHHhhhhcCceeeecc-----ccccCCC
Q 024102 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQE-APPNFRRLLSSRLRRLVSQGKLEKVRN-----CYKIRKE 185 (272)
Q Consensus 118 p~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-v~~n~~~~L~~~LKrlV~~GkLvkvK~-----sykl~~~ 185 (272)
++|.+||+|||.+|+||+|||++||++||+++|. .+++|+.+|+.+||++|++|+|+|+|| ||||++.
T Consensus 6 ~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~~~~~~~~~~lk~aLK~~v~~G~Lvq~Kg~GasGsfKl~~k 79 (83)
T 2lso_A 6 GKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRK 79 (83)
Confidence 6899999999999999999999999999999984 478999999999999999999999998 9999864
No 8
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=8e-19 Score=128.62 Aligned_cols=54 Identities=30% Similarity=0.509 Sum_probs=50.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
+.+++||+|||+.|++||++||. +|+.|+.+|.| |.+||+||||||||||.+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f---~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF---QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC---CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC---ccCcccchHHHHHHHHHhcc
Confidence 68999999999999999999999 99999998765 78999999999999999864
No 9
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.74 E-value=3e-18 Score=137.61 Aligned_cols=59 Identities=31% Similarity=0.609 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQ 62 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~~ 62 (272)
++++++||+|||++|+.||++||.|+|+.|+..+ | .+|.+||++|||||||||++....
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCA-F-EDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSS-S-SSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhccC
Confidence 4789999999999999999999999999999974 3 357999999999999999998754
No 10
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.71 E-value=8.4e-18 Score=123.54 Aligned_cols=54 Identities=39% Similarity=0.737 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
.+|++||+|||+.|+.+|++||.|+|..|++.+. |.+||++||+|||+||+++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP----FVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC----CCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999743 46899999999999999875
No 11
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=6e-18 Score=139.11 Aligned_cols=59 Identities=29% Similarity=0.620 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQ 62 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~~ 62 (272)
++++++||.|||++|++||++||.|+|+.|++.+ |. +|.+||++|||||||||++....
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~~-~~~~RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRA-FE-NVHHRTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHH-HS-SSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHh-cc-ccCCCCHHHHHHHHHHHHhhccC
Confidence 4789999999999999999999999999999964 32 46899999999999999987653
No 12
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.70 E-value=5.7e-18 Score=130.66 Aligned_cols=54 Identities=31% Similarity=0.693 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 6 ~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
++||+|||+.|+.||++||.|+|+.|++++ | .+|++||++|||||||||++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~-~-~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRA-F-DNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHH-C-TTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhh-c-cccCCCCHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999975 3 25789999999999999998765
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=9.5e-18 Score=137.75 Aligned_cols=58 Identities=28% Similarity=0.569 Sum_probs=53.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
++++++||.|||++|+.||++||.|+|+.|+.++.| .|.+||++|||||||||++...
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~--~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD--NADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS--CCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc--ccCCCCHHHHHHHHHHHHhhhc
Confidence 478999999999999999999999999999998755 4789999999999999998754
No 14
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=2.8e-16 Score=110.57 Aligned_cols=52 Identities=37% Similarity=0.747 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
++++||+|||+.|+.+|++||.|+|..|+.... |.+||++||++||+|+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK----FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999999999999622 2389999999999999874
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=1.1e-15 Score=112.99 Aligned_cols=56 Identities=34% Similarity=0.697 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
++++++||+|||+.|+.+|++||.|+|..|+.... |.+||++||++||+|++++..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK----FNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC----cCCCCHHHHHHHHHHHcCCCC
Confidence 47899999999999999999999999999999622 229999999999999998865
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.53 E-value=1e-14 Score=101.79 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
.+++||+|||+.|+.+|.+||.++|..|+.. |++||..||++||.+++.+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANY------LPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT------STTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH------cCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999994 6799999999999999875
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.50 E-value=2.4e-14 Score=99.97 Aligned_cols=50 Identities=32% Similarity=0.611 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
.+++||+|||+.|+.+|.+||.++|..|+.. |++||..||++||.+++.+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH------LKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTT------STTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHH------cCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999999899999994 6799999999999999875
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=2.7e-14 Score=102.53 Aligned_cols=54 Identities=28% Similarity=0.508 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
+..+++||+|||+.|+.+|.+||.++|..|+.. |++||..||++||.+++.+..
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASH------FPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH------CSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH------ccCCCHHHHHHHHHHHcCCcc
Confidence 357899999999999999999999999999994 679999999999999998753
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=101.78 Aligned_cols=54 Identities=26% Similarity=0.443 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
+.++++||+|||+.|+.+|.+||.++|..|+.. |++||..||++||.+++.+..
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASL------LHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH------STTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH------hcCCCHHHHHHHHHHHcCCcc
Confidence 356889999999999999999999999999994 679999999999999988754
No 20
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=2.2e-13 Score=98.17 Aligned_cols=53 Identities=23% Similarity=0.490 Sum_probs=48.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
...+.+||+|||+.|+.+|++||.++|..|++. +++||..||++||.+++...
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~------~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQ------MCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHH------HTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHH------hCCCCHHHHHHHHHHHccCC
Confidence 356889999999999999999999999999994 68999999999999998754
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.37 E-value=3.3e-13 Score=96.77 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCC-CCCHHHHHHHHHHhc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLT-QRSNIDLKDKWRNLS 57 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~-~RT~vdLkdKWRnl~ 57 (272)
.+.+||+|||+.|+.+|++||.++|..|++. ++ +||..||++||.++.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~------~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADY------VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHH------HCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH------HCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999999999994 67 899999999999875
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.28 E-value=5.8e-12 Score=99.05 Aligned_cols=51 Identities=29% Similarity=0.565 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
-.+++||+|||+.|+.+|++||.++|..|+.. |++||+.||++||++++.+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH------LKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTT------STTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhh------hcCCCHHHHHHHHHhccCC
Confidence 36899999999999999999999999999984 6899999999999998764
No 23
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.8e-12 Score=95.03 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-----CChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGP-----GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~-----GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
..+++||.|||+.|+.+|.+||. ++|..|+.. |++||..||++||.+++....
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~------~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE------LGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH------HSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH------hCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999996 799999994 679999999999999887654
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.26 E-value=5e-12 Score=100.22 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 5 r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
|++||+|||+.|+.+|++||.++|..|+.. +++||+.||++||.|++.+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQL------MITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHH------TTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhh------cCCCCHHHHHHHHHHHHccc
Confidence 579999999999999999999999999983 67999999999999988754
No 25
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.25 E-value=5.5e-12 Score=93.79 Aligned_cols=52 Identities=29% Similarity=0.490 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
..+.+||.|||+.|+.+|.+||. +|..|+.. |++||..||++||.++++...
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~------~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISKL------IGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHH------HSSSCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH------cCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999 99999993 689999999999999987754
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.24 E-value=9.7e-12 Score=101.83 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 5 r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
|++||+|||+.|+.+|.+||.++|..|+.. |++||+.||++||.|++.+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~l~p~ 51 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSF------LPNRSPKQCRERWFNHLDPA 51 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTS------CTTSCHHHHHHHHHHHTSTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHH------HCCCCHHHHHHHHhhccCcc
Confidence 689999999999999999999999999983 78999999999999998654
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=6.8e-12 Score=94.51 Aligned_cols=49 Identities=37% Similarity=0.451 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
..+++||+|||+.|+.+|.+||. +|+.|++. | +||..|||+||+.|.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~------l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGAA------L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH------H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH------h-CCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998 69999994 7 99999999999988664
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.7e-12 Score=92.03 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQQ 63 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~~~ 63 (272)
..+.+||.|||+.|+.+|+.||. +|..|+.. .+||..||++||.+++.+....
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~~-------~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAPI-------IGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHHH-------HSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhcc-------cCcCHHHHHHHHHHHhChHhcC
Confidence 46789999999999999999998 99999992 4799999999999998876543
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.22 E-value=1.4e-11 Score=100.45 Aligned_cols=52 Identities=37% Similarity=0.675 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
+.++++||+|||+.|+.+|++||. +|..|+.. |++||..||++||+|++.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~------~~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT------FPNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT------CTTCCHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH------cCCCCHHHHHHHHhhhcccc
Confidence 467899999999999999999998 99999984 67999999999999988653
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.19 E-value=1.9e-11 Score=99.55 Aligned_cols=51 Identities=29% Similarity=0.633 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
..+++||+|||+.|+.+|++||.++|..|+.. |++||..||++||.+++.+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH------LKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH------SSSCCHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH------hcCCcHHHHHHHHHHhccc
Confidence 46899999999999999999999999999994 6899999999999998764
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.13 E-value=2.4e-11 Score=92.55 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLS 57 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~ 57 (272)
.+.+||.|||..|+.+|++|| ++|..|++. +.+||..||++||.++.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~------v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSEH------VGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH------HSSCCHHHHHHHHTTSC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH------cCCCCHHHHHHHHHHhc
Confidence 478999999999999999999 899999994 67999999999999883
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.13 E-value=1.2e-10 Score=95.27 Aligned_cols=61 Identities=26% Similarity=0.488 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccccccCCCCccC
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQQGSKDKIR 70 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~~~~~~~k~r 70 (272)
..+++||+|||+.|+.+|.+||. +|..|+.. |++||..+|++||.++++.....++..+..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~------l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~ 112 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGS-KWSVIAKL------IPGRTDNAIKNRWNSSISKRISTNSNHKEI 112 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTT------STTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH------cCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 45789999999999999999996 99999983 789999999999999998877666555544
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.09 E-value=1.2e-10 Score=91.39 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
..+.+||+|||+.|+.+|.+||. +|..|++. |++||..+|++||+++++.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~------l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL------LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT------CTTCCHHHHHHHHHHHTC-
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHHH------cCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999997 99999983 7899999999999998764
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.08 E-value=1.9e-11 Score=102.78 Aligned_cols=54 Identities=31% Similarity=0.640 Sum_probs=11.4
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 1 MG-NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 1 mg-~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
|| -.+++||+|||+.|+.+|++||.++|..|+.. +++||+.||++||++++.+.
T Consensus 1 ~g~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~l~p~ 55 (159)
T 1h89_C 1 MGHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANY------LPNRTDVQCQHRWQKVLNPE 55 (159)
T ss_dssp ------------------------------------------------CHHHHHHTTTCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH------cCCCCHHHHHHHHHHccCCC
Confidence 55 57889999999999999999999999999983 68999999999999998763
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.05 E-value=1.8e-10 Score=93.79 Aligned_cols=52 Identities=27% Similarity=0.569 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
..+++||+|||+.|+.+|.+||. +|..|+.. |++||..+|++||.++++..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~------l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIAKF------FPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT------STTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHHH------cCCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999996 99999983 789999999999999987643
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.02 E-value=1.6e-10 Score=91.50 Aligned_cols=51 Identities=27% Similarity=0.588 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
..+++||+|||+.|+.+|.+||. +|..|++. |++||..+|++||.++++..
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~------l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP-KWNKISKF------LKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHH------HSSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc-CHHHHHHH------CCCCCHHHHHHHHHHHHhhH
Confidence 35789999999999999999998 99999983 68999999999999998764
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.02 E-value=3.5e-10 Score=95.00 Aligned_cols=51 Identities=29% Similarity=0.565 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
..+++||+|||+.|+.+|++||.++|..|+.. |++||..||++||.+++.+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH------LKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHT------STTCCHHHHHHHHHHTTCT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHH------cCCCCHHHHHHHHHHHhCc
Confidence 35789999999999999999999899999983 7899999999999998754
No 38
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=1.8e-10 Score=86.69 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC---CCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHG---PGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G---~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
..+.+||.|||..|+.+|.+|| +.+|..|+.. +++||..||++||.+|+.-.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~------vpGRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC------VPSKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG------CSSSCHHHHHHHHHHHHSSC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH------cCCCCHHHHHHHHHHHHHcc
Confidence 3567899999999999999999 4599999994 78999999999999997654
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.99 E-value=4.4e-10 Score=91.38 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
..+.+||+|||+.|+.+|.+||. +|..|++. |++||..+|++||+++++.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~------l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL------LPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGGG------STTCCHHHHHHHHHTTTTC
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHHH------CCCCCHHHHHHHHHHHHhc
Confidence 45789999999999999999997 99999983 7899999999999998764
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.53 E-value=5.4e-11 Score=92.19 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
..+++||.|||+.|+.+|.+||. +|..|+.. |++||..||+++|.++++..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~------l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIARM------VGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 45789999999999999999998 99999984 78999999999999987664
No 41
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.77 E-value=5e-09 Score=82.21 Aligned_cols=51 Identities=24% Similarity=0.483 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---CCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHG---PGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G---~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
.+.+||.|||..|..++.+|| +.+|..|+.. +++||..||+.||.+|....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~------vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARA------VEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH------STTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH------cCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999998 4679999994 78999999999999987543
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.72 E-value=9.3e-09 Score=92.95 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCC-----hhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGK-----WKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~Gk-----W~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
-.+.+||+|||+.|+..|++||..+ |..|++ +|+|||..+||+||+++++...
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk------~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH------YVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT------TSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH------HcCCCCHHHHHHHHHHHHhhhc
Confidence 3578999999999999999999853 999998 4899999999999999887754
No 43
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=2.1e-07 Score=67.04 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
....+||+||++.+..++.+||. +|..|+. +|++||..||...|....+.
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~------~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS------YLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH------HCTTSCHHHHHHHHHHHTCC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHhcCC
Confidence 34579999999999999999996 9999997 38899999999999766543
No 44
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=2.7e-07 Score=69.07 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGP---GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~---GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
.....||.||+..|..++.+|+. .+|..|+.. + +||..||+.+|..|...
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~------l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE------L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH------H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH------h-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999984 579999994 3 89999999999999766
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.07 E-value=3.8e-06 Score=65.90 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 6 ~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
.+||.||++.|.+++++||. +|-.|...+.+.. +.+||-.|||+||-.+.+..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~-~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTT-SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCC-CCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999997 9999999866543 35899999999997766543
No 46
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.01 E-value=8.6e-06 Score=61.24 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 5 KQKWTAEEEEALLAGVAKHGP---GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 5 r~~WT~eEd~~L~~GV~k~G~---GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
...||.+|+.+|..++..|+. ++|..|+.. +++||..+|+.+|..|....
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~------V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAA------VGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH------TTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH------cCCCCHHHHHHHHHHHHhcc
Confidence 457999999999999999976 789999994 68999999999999985543
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.92 E-value=1.7e-05 Score=68.68 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCC--------CCCCCCCHHHHHHHHHHhccc
Q 024102 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFA--------PSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 5 r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~--------~~l~~RT~vdLkdKWRnl~~~ 59 (272)
...||.+||..|+.||.+||-|+|..|..||.|+ .+...++.+.|..|-..|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999743 123467788999997666543
No 48
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.91 E-value=8e-06 Score=73.34 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
+...+||+||...++.|+.+||. +|..|++. +.+||..||+..|.+..+..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~------VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDV------IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH------HSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH------cCCCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999997 99999993 78999999999998776553
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.81 E-value=1.7e-05 Score=56.96 Aligned_cols=49 Identities=31% Similarity=0.447 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcc
Q 024102 5 KQKWTAEEEEALLAGVAKH--------GPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSV 58 (272)
Q Consensus 5 r~~WT~eEd~~L~~GV~k~--------G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~ 58 (272)
|.+||.|||..|++-|.+| |..-|+.|... .++.+|-.+++|||++.++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-----~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-----SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-----CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-----HCCCCCHHHHHHHHHHHcc
Confidence 7899999999999999999 77789999882 2579999999999988654
No 50
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.40 E-value=8.7e-05 Score=68.05 Aligned_cols=32 Identities=50% Similarity=0.885 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCChhhhhcCCCCC
Q 024102 7 KWTAEEEEALLAGVAKHGPGKWKNILRDPQFA 38 (272)
Q Consensus 7 ~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~ 38 (272)
.|+.+||..|+.||.+||-|+|..|..||.++
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~L~ 201 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLG 201 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCTTTC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcCcccC
Confidence 39999999999999999999999999999764
No 51
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.0004 Score=50.17 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
....||+||-.....|+.+||. +|..|.++ ++++||..||..-|-.-.+..
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~ 58 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE-----LLPNKETGELITFYYYWKKTS 58 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH-----SCTTSCHHHHHHHHHHHHCSS
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCcHHHHHHHHhcccCCC
Confidence 3568999999999999999998 99999984 378999999998876544443
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.34 E-value=0.00023 Score=55.78 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 6 ~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
..||.||.+.|.+.+++|+- +|--|...+.+.. +..||-.|||+||-.+...
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~-~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTT-SCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCC-CCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999997 9999999876643 3589999999998655443
No 53
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.20 E-value=0.0011 Score=48.79 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
.....||+||-.....|+.+||. +|..|.++ ++++||..||..-|-.-.+...
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~~ 58 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQD-----FLPWKSLTSIIEYYYMWKTTDR 58 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT-----TCSSSCHHHHHHHHHHHHTCCS
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCCHHHHHHHHHhhcCCch
Confidence 35678999999999999999998 99999985 4789999999998875444443
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.15 E-value=0.00021 Score=66.51 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CChhhhh----cCCC--CCCCCCCCCHHHHHHHHHHhccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGP---GKWKNIL----RDPQ--FAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~---GkW~~I~----~~~~--F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
++.+.||.+||..|+-++.+||. |+|..|. ..|. |.-|+..||+.+|..|-..|+..
T Consensus 210 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 210 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999 9999995 4443 45567899999999999888755
No 55
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.90 E-value=0.00033 Score=52.71 Aligned_cols=43 Identities=16% Similarity=0.417 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCC---ChhhhhcCCCCCCCCCCCCHHHHHHHHH
Q 024102 6 QKWTAEEEEALLAGVAKHGPG---KWKNILRDPQFAPSLTQRSNIDLKDKWR 54 (272)
Q Consensus 6 ~~WT~eEd~~L~~GV~k~G~G---kW~~I~~~~~F~~~l~~RT~vdLkdKWR 54 (272)
..||.+|+.+|..++.+|+.+ +|.+|+.. ++|||..+|+..|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~------VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQY------VKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG------SCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH------cCCCCHHHHHHHHH
Confidence 479999999999999999875 89999994 78999999998764
No 56
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.79 E-value=0.00026 Score=53.53 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---------CChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGP---------GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~---------GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
....||.+|..+|+.....+.. ..|..|... +...=..||+.||++||.||.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~--m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSK--MREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH--HHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4578999999999999875322 279998764 110002799999999999998774
No 57
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.67 E-value=0.0014 Score=64.46 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~ 59 (272)
...+||.||-..++.||.+||. +|..|... +..||..||+..|.+..+.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~------VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDV------IGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHH------HSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH------hCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999998 99999984 6799999999998765443
No 58
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.51 E-value=0.0043 Score=48.20 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcc
Q 024102 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSV 58 (272)
Q Consensus 5 r~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~ 58 (272)
...||+||-+.+.+++..||. +|..|.. +|++||..||-.-|-.-.+
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~------~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIAS------FLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHH------TCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHH------HcCCCCHHHHHHHHhcccc
Confidence 468999999999999999997 9999976 4899999999987644333
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.19 E-value=0.0025 Score=60.89 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CChhhhhcC----CC--CCCCCCCCCHHHHHHHHHHhcccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGP---GKWKNILRD----PQ--FAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~---GkW~~I~~~----~~--F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
+.+.||.+||..|+-++.+||. |+|..|..+ |. |.-||..||+..|..|-..|+...
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999 999998443 43 444578999999999999887653
No 60
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.43 E-value=0.016 Score=45.32 Aligned_cols=56 Identities=18% Similarity=0.394 Sum_probs=47.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccccc
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGP--GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQQ 63 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~--GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~~~ 63 (272)
|..---||.|||..|+...++-|. -.|..|.+. |.+|+..|+++||+.|.+.....
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~------L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ------LGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHH------HccCCHHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999987 589999884 67899999999999998876543
No 61
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=94.69 E-value=0.11 Score=41.62 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC----CCcchHHHHHHHHHhhhhcCceeeec
Q 024102 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE----APPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
..++.-+|..||..||..-. .+..+..-|..||+++|. -+..++..|+..|- -+.-|++|.
T Consensus 14 ~~KPp~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv~ 78 (111)
T 2c6y_A 14 DSKPPYSYAQLIVQAITMAP-DKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLS---LNRYFIKVP 78 (111)
T ss_dssp CCCCSSCHHHHHHHHHHTST-TSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHH---HSTTEEEEC
T ss_pred CCCCCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhh---hhhhhcccc
Confidence 34455689999999999853 456899999999999983 35667777777664 456666663
No 62
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.65 E-value=0.0058 Score=45.35 Aligned_cols=52 Identities=15% Similarity=0.355 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC--CChhhhhcCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 024102 3 NQKQKWTAEEEEALLAGVAKHGP--GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (272)
Q Consensus 3 ~~r~~WT~eEd~~L~~GV~k~G~--GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~~ 61 (272)
-.--.||.|||..|+...++-|+ -.|..|+.. | +||+.|+++||+.|.+...
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~------L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAAK------L-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 34457999999999999999997 578888874 6 8999999999999987754
No 63
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=94.14 E-value=0.14 Score=39.80 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc----CCCcchHHHHHHHHHhhhhcCceeee
Q 024102 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQ----EAPPNFRRLLSSRLRRLVSQGKLEKV 176 (272)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~n~~~~L~~~LKrlV~~GkLvkv 176 (272)
+.-+|..||..||..- ..++.+.+-|.+||+++| .-+..++..|+..|- -+.-|+++
T Consensus 4 Pp~SY~~LI~~AI~~s-p~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLS---ln~~F~kv 64 (93)
T 2a07_F 4 PPFTYATLIRQAIMES-SDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLS---LHKCFVRV 64 (93)
T ss_dssp CSCCHHHHHHHHHHHS-TTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCTTBCCE
T ss_pred CCCCHHHHHHHHHHhC-CCCCccHHHHHHHHHHhCCccccCCCccccccceeee---hhhceeec
Confidence 4568999999999875 345689999999999998 234566666776664 34455554
No 64
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.53 E-value=0.058 Score=46.27 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcc
Q 024102 4 QKQKWTAEEEEALLAGVAKHG--PGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSV 58 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G--~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~ 58 (272)
....||..|-..|+.++.+|| .++|..|..+.. |.++|..++++=++.+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~----L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE----LVDKSETDLRRLGELVHN 58 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT----CTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc----cCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999 589999999864 468999999986655543
No 65
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.41 E-value=0.15 Score=37.23 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=39.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCC--hhhhhcCCCCCCCCCCCCHHHHHHHHH
Q 024102 2 GNQKQKWTAEEEEALLAGVAKHGPGK--WKNILRDPQFAPSLTQRSNIDLKDKWR 54 (272)
Q Consensus 2 g~~r~~WT~eEd~~L~~GV~k~G~Gk--W~~I~~~~~F~~~l~~RT~vdLkdKWR 54 (272)
.++|-.||+|.-+.++++|+..|..+ |+.|++. .+ ..+.|..+++.+..
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~--M~--v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDL--MN--VDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHH--HC--CTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHH--cC--CCCCCHHHHHHHHH
Confidence 47889999999999999999999532 7899873 12 36889999997643
No 66
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.20 E-value=0.086 Score=47.64 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHh-h--------------------------------CC------------------------C
Q 024102 4 QKQKWTAEEEEALLAGVAK-H--------------------------------GP------------------------G 26 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k-~--------------------------------G~------------------------G 26 (272)
-+.+||.+||-.|...|.+ | |+ +
T Consensus 93 iK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~ 172 (246)
T 1ign_A 93 IKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIARE 172 (246)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCCTT
T ss_pred ccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHH
Confidence 3789999999999999988 2 11 3
Q ss_pred ChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 27 KWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 27 kW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
.|+.|.+. +++||.+..||||+.++...
T Consensus 173 ~fk~ia~~------~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEE------HAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHH------TTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHH------CCCCChhhHHHHHHHHHhhc
Confidence 79999884 68999999999999887654
No 67
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=93.20 E-value=0.18 Score=39.78 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC----CCcchHHHHHHHHHhhhhcCceeee
Q 024102 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE----APPNFRRLLSSRLRRLVSQGKLEKV 176 (272)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~~n~~~~L~~~LKrlV~~GkLvkv 176 (272)
++.-+|..||..||..- ..++.+..-|.+||+++|. -+..++..|+..|- -+.-|++|
T Consensus 3 KPp~SY~~LI~~AI~~s-p~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 64 (102)
T 1vtn_C 3 KPPYSYISLITMAIQQA-PGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLS---FNDCFVKV 64 (102)
T ss_dssp CCSSCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHH---HCTTEEEE
T ss_pred CcCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhh---hccceEec
Confidence 45568999999999975 3445799999999999982 24566677776664 35667766
No 68
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=93.06 E-value=0.25 Score=39.45 Aligned_cols=58 Identities=26% Similarity=0.292 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc----CCCcchHHHHHHHHHhhhhcCceeee
Q 024102 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQ----EAPPNFRRLLSSRLRRLVSQGKLEKV 176 (272)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~n~~~~L~~~LKrlV~~GkLvkv 176 (272)
++..+|..||..||..- ..++.+..-|.+||+++| .-++.++..|+..|- -+.-|++|
T Consensus 3 KPp~SYa~LI~~AI~~s-p~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 64 (109)
T 2hfh_A 3 KPPYSYIALITMAILQS-PQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS---LNDCFVKI 64 (109)
T ss_dssp CCCCCHHHHHHHHHHTC-SSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHH---HHTCCBCC
T ss_pred CCCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhh---hhhhhhcC
Confidence 34568999999999864 345579999999999998 346777777776664 33445544
No 69
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=92.60 E-value=0.24 Score=41.26 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=45.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC-----CCcchHHHHHHHHHhhhhcCceeee
Q 024102 109 TSALDGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE-----APPNFRRLLSSRLRRLVSQGKLEKV 176 (272)
Q Consensus 109 ~~~~~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-----v~~n~~~~L~~~LKrlV~~GkLvkv 176 (272)
+.....+..-+|..||..||....+ ++.+...|..||+++|. -+..++..|+..|- -+.-|+++
T Consensus 12 ~~~~~~KPpySYa~LI~~AI~~sp~-~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLS---ln~~F~r~ 80 (142)
T 3g73_A 12 QNSVSERPPYSYMAMIQFAINSTER-KRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLS---LHDMFVRE 80 (142)
T ss_dssp --CTTSCCSSCHHHHHHHHHHTSTT-SEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHH---HCTTEEEE
T ss_pred CccCCCCCCCCHHHHHHHHHHhCCC-CCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhh---hhhhheec
Confidence 3344455566899999999988443 44899999999999983 35567777776653 44556654
No 70
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.38 E-value=0.21 Score=39.06 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC----CCcchHHHHHHHHHhhhhcCceeee
Q 024102 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE----APPNFRRLLSSRLRRLVSQGKLEKV 176 (272)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~~n~~~~L~~~LKrlV~~GkLvkv 176 (272)
+..+|..||..||..- ..++.+.+-|.+||+++|. -++.++..|+..|- -+.-|++|
T Consensus 3 Pp~SY~~LI~~AI~~s-p~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~Kv 63 (97)
T 2hdc_A 3 PPYSYIALITMAILQS-PQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS---LNDCFVKI 63 (97)
T ss_dssp CCCCHHHHHHHHHHTC-TTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHH---HHHCCEEE
T ss_pred CCCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhh---hhhheeec
Confidence 3458999999999874 3456799999999999982 24566666766663 23345544
No 71
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=91.42 E-value=0.21 Score=39.17 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC----CCcchHHHHHHHHHhhhhcCceeee
Q 024102 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE----APPNFRRLLSSRLRRLVSQGKLEKV 176 (272)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~~n~~~~L~~~LKrlV~~GkLvkv 176 (272)
+..+|..||..||..-. .+..+.+-|.+||+++|. -+..++..|+..|- -+.-|++|
T Consensus 3 Pp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 63 (100)
T 1kq8_A 3 PPYSYIALITMAIRDSA-GGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLS---LNDCFVKV 63 (100)
T ss_dssp ----CHHHHHHHHTTSS-SSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHH---HHTCCEEC
T ss_pred CCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHhCccccCCCCceecccchhee---hhheeeec
Confidence 34578999999999854 345899999999999983 35566767776664 33445555
No 72
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=89.77 E-value=0.44 Score=36.26 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC---C------CcchHHHHHHHHHhhhhcCceeeec
Q 024102 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE---A------PPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~---v------~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
...+|..||..||....++ ..+.+.|..||+++|. . ...++..|+..|- -+.-|++|.
T Consensus 6 p~~SY~~LI~~Ai~~sp~~-~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 72 (85)
T 3bpy_A 6 GNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 72 (85)
T ss_dssp BSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCHHHHHHHHHHhCCcC-CccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhcc---HhhhheeCC
Confidence 3458999999999985543 4899999999999972 1 2356667776654 456677764
No 73
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=89.71 E-value=0.43 Score=38.03 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC---C------CcchHHHHHHHHHhhhhcCceeeec
Q 024102 114 GKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE---A------PPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 114 ~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~---v------~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
.+..-+|..||..||....++ ..++..|..||+++|. . ...++..|+..|- -+.-|++|.
T Consensus 23 ~kPpySY~~LI~~AI~~sp~~-~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 91 (110)
T 3l2c_A 23 AWGNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 91 (110)
T ss_dssp TTBSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCcc-CcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhcc---HhhhheeCC
Confidence 334568999999999986554 4899999999999982 1 2357777777664 456677764
No 74
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=89.49 E-value=0.81 Score=36.88 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC---C-C-----cchHHHHHHHHHhhhhcCceeeec
Q 024102 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE---A-P-----PNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~---v-~-----~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
...+|..||..||..- ..+..++.-|..||+++|. - + ..++..|+..|- -+.-|++|.
T Consensus 12 Pp~SYa~LI~~AI~~s-p~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLS---ln~~F~Kv~ 78 (117)
T 3coa_C 12 GNLSYADLITKAIESS-AEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIRVQ 78 (117)
T ss_dssp BSCCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCHHHHHHHHHHhC-CCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchhee---cchhhcccc
Confidence 4568999999999974 3455899999999999972 1 2 455666666553 456777763
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.11 E-value=0.84 Score=41.62 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC--CChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 024102 4 QKQKWTAEEEEALLAGVAKHGP--GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (272)
Q Consensus 4 ~r~~WT~eEd~~L~~GV~k~G~--GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~~~ 60 (272)
|++.||..|...|+..+.+||. ++|..|..|-. |..++...++.=+..|....
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~----L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT----LPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS----SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc----cccCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999995 89999999854 56899999998777665443
No 76
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=82.92 E-value=1.5 Score=36.78 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCC---------CcchHHHHHHHHHhhhhcCceeeec
Q 024102 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEA---------PPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v---------~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
...+|..||..||..-. .+..++.-|..||+++|.. ...++..|+..|- -+.-|++|.
T Consensus 41 Pp~SYa~LI~~AI~sSp-~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLS---Lnk~F~Kv~ 107 (150)
T 1e17_A 41 GNQSYAELISQAIESAP-EKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 107 (150)
T ss_dssp CSCCHHHHHHHHHHHSS-SCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHH---SSTTEEEEC
T ss_pred CCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeee---eeeeeEecC
Confidence 45689999999999853 3458999999999999821 1234445555543 456677764
No 77
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=79.56 E-value=0.37 Score=47.36 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHH
Q 024102 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRN 55 (272)
Q Consensus 6 ~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRn 55 (272)
..||++|...+..|+.+||. +|..|.+ +|++||..+|-.-|-.
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~------~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ------MLPDKSIASLVKFYYS 232 (482)
T ss_dssp --------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH------HcCCCCHHHHHHHhcc
Confidence 47999999999999999997 9999986 4789999999876433
No 78
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=76.76 E-value=3.4 Score=38.23 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCChhhhhcCCCCCCCCCCCCHHHHHHHHHHhcc
Q 024102 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSV 58 (272)
Q Consensus 6 ~~WT~eEd~~L~~GV~k~G~GkW~~I~~~~~F~~~l~~RT~vdLkdKWRnl~~ 58 (272)
..||..+-..++.|+.+||...|..|+.+ +.+.|..+++.-...+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e------v~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKD------VEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTS------STTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHH------hcCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999999996 468999999876555543
No 79
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=64.71 E-value=9.5 Score=27.68 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec---cccccCC
Q 024102 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR---NCYKIRK 184 (272)
Q Consensus 120 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK---~sykl~~ 184 (272)
.+..|++.|..+.+..+.+...|++-+. ++ ++.++..|.+|...|.|..+. +.|.+.+
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lg----vs---~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHC----CC---HHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 3567888888888888889888887664 44 467999999999999998764 4666654
No 80
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=60.17 E-value=13 Score=27.97 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeeccccccCC
Q 024102 119 KYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNCYKIRK 184 (272)
Q Consensus 119 ~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK~sykl~~ 184 (272)
+.-++|.+-+..+.+ |..+..|+..+.=+ -+.++..|..|...|-+.+..+.|.|++
T Consensus 5 s~~eIi~~IL~~i~~--~~~~t~La~~~~ls-------~~~~~~~l~~L~~~GLI~~~~~~~~LT~ 61 (95)
T 1r7j_A 5 SKLEIIQAILEACKS--GSPKTRIMYGANLS-------YALTGRYIKMLMDLEIIRQEGKQYMLTK 61 (95)
T ss_dssp CHHHHHHHHHHHHTT--CBCHHHHHHHHTCC-------HHHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHhCcC-------HHHHHHHHHHHHHCCCeEEECCeeEECh
Confidence 456788888888874 37888887665433 3578899999999999999998899864
No 81
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=60.04 E-value=11 Score=29.72 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhcCcCCC-CCHHHHHHHHHHhc
Q 024102 118 PKYNAMIFEAISTLKDANG-SDISAIANFIEERQ 150 (272)
Q Consensus 118 p~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y 150 (272)
.....+|.+||..+.+.+| .+..+|-.||..+|
T Consensus 20 ~~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~ 53 (105)
T 2kpm_A 20 AFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQ 53 (105)
T ss_dssp CCCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhC
Confidence 3458999999999988777 79999999999987
No 82
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=54.93 E-value=17 Score=27.07 Aligned_cols=51 Identities=10% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeecc
Q 024102 121 NAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRN 178 (272)
Q Consensus 121 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK~ 178 (272)
.++|+.+|..|.+.....-.-|+ .+.+++ ++-++..|=+|..+|.|.++.+
T Consensus 14 ~~~v~~~i~~L~~~~~~Ta~~IA----kkLg~s---K~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 14 FSLVKKEVLSLNTNDYTTAISLS----NRLKIN---KKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHH----HHTTCC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHhCCCCcchHHHHHH----HHHCCC---HHHHHHHHHHHHHCCCEecCCC
Confidence 67899999999988776655554 455565 4668999999999999988764
No 83
>1psm_A SPAM-H1; polymorphic antigen; NMR {Plasmodium falciparum} SCOP: j.18.1.1
Probab=53.86 E-value=0.95 Score=29.45 Aligned_cols=24 Identities=42% Similarity=0.304 Sum_probs=12.9
Q ss_pred HHhhHhhhhHHHHHHHHHHHHhHH
Q 024102 230 EAENKSFLAAEAFKEAERVSKMAE 253 (272)
Q Consensus 230 EAE~~~~~A~eA~~eae~~~~~ae 253 (272)
+||.+.-+|++|+++||.++++||
T Consensus 12 dAe~aAkdAe~a~~~AEqAsKdAe 35 (38)
T 1psm_A 12 DAEQAAKDAENASKEAEEAAKEAV 35 (38)
T ss_dssp HHHSTTTTTTHHHHHTTTTTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555556666655555543
No 84
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=49.45 E-value=37 Score=24.93 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec---cccccCCC
Q 024102 121 NAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR---NCYKIRKE 185 (272)
Q Consensus 121 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK---~sykl~~~ 185 (272)
+.-|++.|.......+.+..-|++-+. ++ ++-++.+|.+|...|.|..+. +.|.+.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg----vs---r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEESSSSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCeeEEeCc
Confidence 455777777655555678777776654 54 468999999999999998764 47777654
No 85
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=47.49 E-value=53 Score=24.92 Aligned_cols=47 Identities=21% Similarity=0.438 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhcCcCCC-CCHHHHHHHHHHhc-CC-CcchH-HHHHHHHH
Q 024102 119 KYNAMIFEAISTLKDANG-SDISAIANFIEERQ-EA-PPNFR-RLLSSRLR 165 (272)
Q Consensus 119 ~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y-~v-~~n~~-~~L~~~LK 165 (272)
...++|.+||..+.+.+| .+..+|-.||..+| .+ |.||. +.|+.-|+
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~kLs~Li~ 58 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVK 58 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccCcccHHHHHH
Confidence 578999999999988777 79999999999988 33 44443 33444444
No 86
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=46.35 E-value=32 Score=25.90 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeeccc-cccC
Q 024102 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNC-YKIR 183 (272)
Q Consensus 120 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK~s-ykl~ 183 (272)
..+.|++++....++- +-.- |.+.-+++ ++-|+.+|++|-..|+|+.++.+ |.|.
T Consensus 20 ~eekVLe~LkeaG~Pl--kage----Iae~~Gvd---KKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPV--KLAQ----LVKECQAP---KRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCE--EHHH----HHHHHTSC---HHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHHHcCCCC--CHHH----HHHHHCCC---HHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 3678888888876653 2233 33444555 57899999999999999999874 4553
No 87
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=45.99 E-value=19 Score=26.36 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=22.9
Q ss_pred HHHHHHHhcCcCCCCCH---HHHHHHHHHhc
Q 024102 123 MIFEAISTLKDANGSDI---SAIANFIEERQ 150 (272)
Q Consensus 123 MI~EAI~~Lker~GSS~---~AI~kyIe~~y 150 (272)
-|-.||+....|.|.|. |-|+.||..||
T Consensus 52 yinnaisafssrtgisqetaqkiadfitsny 82 (82)
T 3fbl_A 52 YINNAISAFSSRTGISQETAQKIADFITSNY 82 (82)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHhcCC
Confidence 34568899999999986 56899999887
No 88
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=44.58 E-value=33 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhcCceeeeccccccCCC
Q 024102 157 RRLLSSRLRRLVSQGKLEKVRNCYKIRKE 185 (272)
Q Consensus 157 ~~~L~~~LKrlV~~GkLvkvK~sykl~~~ 185 (272)
...++.+|+.|...|.|....|.|.|.+.
T Consensus 57 ~~tv~~~L~~L~~~Glv~~~~g~y~l~~~ 85 (96)
T 1y0u_A 57 KKQLDYHLKVLEAGFCIERVGERWVVTDA 85 (96)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECTT
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEECCC
Confidence 45689999999999999987788888763
No 89
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=38.55 E-value=19 Score=26.63 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhcCceee-eccccccC
Q 024102 158 RLLSSRLRRLVSQGKLEK-VRNCYKIR 183 (272)
Q Consensus 158 ~~L~~~LKrlV~~GkLvk-vK~sykl~ 183 (272)
..|..-|-++|..|+|+. ..|.|||+
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG~YkL~ 74 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred HHHHHHHHHHHhCCeEEEeCCCEEeCC
Confidence 679999999999999997 58899984
No 90
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=38.46 E-value=48 Score=22.93 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec-cccccC
Q 024102 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR-NCYKIR 183 (272)
Q Consensus 120 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK-~sykl~ 183 (272)
...-|++.+.. +....|...|+. ...++ +..+...|+.|.+.|.|+..+ |.|.|.
T Consensus 11 ~~~~IL~~L~~--~~~~~s~~eLA~----~lgls---r~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSD--DGGPVAIFQLVK----KCQVP---KKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHH--HCSCEEHHHHHH----HHCSC---HHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHH----HHCcC---HHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 35567777764 223466666554 44565 678888999999999988764 577763
No 91
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=38.10 E-value=87 Score=22.37 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 024102 121 NAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 121 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
.-.|+..| .+.+|.+...|.+.|.+...+. ...++..|++|+..|-|.+..
T Consensus 10 q~~iL~~l---~~~~~~~~~el~~~la~~l~is---~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 10 EAIVLAYL---YDNEGIATYDLYKKVNAEFPMS---TATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp HHHHHHHH---TTCTTCBHHHHHHHHHTTSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH---HHcCCcCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCEEEEe
Confidence 34455555 4457789999988887777664 457888999999999998764
No 92
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=37.04 E-value=22 Score=25.00 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=29.9
Q ss_pred HHhcCcCCCCCHHHHHHHHHHhc---CCCcchHHHHHHHHHhh
Q 024102 128 ISTLKDANGSDISAIANFIEERQ---EAPPNFRRLLSSRLRRL 167 (272)
Q Consensus 128 I~~Lker~GSS~~AI~kyIe~~y---~v~~n~~~~L~~~LKrl 167 (272)
|..|.+.-|.|..+|..+|..+- .+.+..+..|...++.+
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 44566677999999999999876 77777676766666543
No 93
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=33.37 E-value=1.1e+02 Score=21.27 Aligned_cols=52 Identities=12% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 024102 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 120 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
....|+..|-. .++.+...|...+.....+. ...+...|++|++.|-|.+.+
T Consensus 10 ~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s---~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWK---HSSINTNEVIKELSKTSTWS---PKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhhcCCcc---HHHHHHHHHHHHHCCCeEEEe
Confidence 45667777766 45789999999997653332 467899999999999999875
No 94
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=32.86 E-value=13 Score=23.45 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=7.5
Q ss_pred HHHHHHHhhc
Q 024102 262 VKEIYERCSF 271 (272)
Q Consensus 262 a~ei~~~c~~ 271 (272)
..+||+||+.
T Consensus 13 ~~lIl~RCs~ 22 (32)
T 1k4u_P 13 ADLILNRCSE 22 (32)
T ss_dssp HHHHHHSSCH
T ss_pred HHHHHHHccH
Confidence 3589999974
No 95
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=31.25 E-value=62 Score=24.48 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcC-cCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeeccccccC
Q 024102 121 NAMIFEAISTLK-DANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNCYKIR 183 (272)
Q Consensus 121 ~~MI~EAI~~Lk-er~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK~sykl~ 183 (272)
..-++.+|..+. +..+.+...|+..+ .++ +..++..|++|...|-|.+..+.|.|.
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l----~is---~~tv~~~l~~Le~~Gli~r~~~~~~Lt 71 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDL----KIA---PSSVFEEVSHLEEKGLVKKKEDGVWIT 71 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHh----CCC---hHHHHHHHHHHHHCCCEEecCCeEEEC
Confidence 344666776653 34567888887765 343 467899999999999988766455553
No 96
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=28.27 E-value=84 Score=22.47 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=29.1
Q ss_pred hcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 024102 130 TLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 130 ~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
.|.+ ++.+...|+..+ +++ ...++.+|+.|...|.|...+
T Consensus 31 ~L~~-~~~~~~ela~~l----~is---~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 31 MLHN-QELSVGELCAKL----QLS---QSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HTTT-SCEEHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhc-CCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCeEEEE
Confidence 3444 566777777666 343 457899999999999998765
No 97
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=27.02 E-value=72 Score=22.42 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=28.2
Q ss_pred CcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 024102 132 KDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 132 ker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
.+..+.+...|...+ +++ ...++..|+.|...|.|...+
T Consensus 34 ~~~~~~s~~ela~~l----~is---~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 34 SGSPGTSAGELTRIT----GLS---ASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp TTCCSEEHHHHHHHH----CCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCCcCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEEe
Confidence 344566777766655 333 457899999999999998765
No 98
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.47 E-value=1.4e+02 Score=20.65 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhc-CCCcchHHHHHHHHHhhhhcCceeeec
Q 024102 121 NAMIFEAISTLKDANGSDISAIANFIEERQ-EAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 121 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y-~v~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
...|++.|..-. ....+...|...+.+.+ .++ ..-+...|+.|++.|.|.++.
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is---~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIG---LATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCC---HhhHHHHHHHHHHCCCeEEEe
Confidence 456777775421 14689999999998775 232 467888999999999999875
No 99
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.18 E-value=1.8e+02 Score=21.03 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhhcCceeeeccc
Q 024102 158 RLLSSRLRRLVSQGKLEKVRNC 179 (272)
Q Consensus 158 ~~L~~~LKrlV~~GkLvkvK~s 179 (272)
..+...|+.|...|.|..+.|.
T Consensus 39 ~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 39 YQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHCCcEEecCCC
Confidence 4488999999999999998653
No 100
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=24.04 E-value=59 Score=24.29 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeecc
Q 024102 122 AMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRN 178 (272)
Q Consensus 122 ~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK~ 178 (272)
.+...-|.-|+ .+|.+...|++- .+++ +..++.+|.+|...|.|++..+
T Consensus 17 ~~~~~IL~lL~-~~g~sa~eLAk~----LgiS---k~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEGATAAQLTRQ----LNME---KREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHS-SSTEEHHHHHHH----SSSC---HHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHH----HCcC---HHHHHHHHHHHHHCCCEEeCCC
Confidence 34555566677 577666666554 4454 4679999999999999998765
No 101
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=23.98 E-value=94 Score=26.50 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=37.5
Q ss_pred HHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeee-ccccccCCC
Q 024102 124 IFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKV-RNCYKIRKE 185 (272)
Q Consensus 124 I~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkv-K~sykl~~~ 185 (272)
|+++|.. .+.+.+...|... .+++ +..+...|+.|++.|-|.+. .+.|+|.+.
T Consensus 13 iL~~l~~--~~~~~~~~ela~~----~gl~---~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~ 66 (249)
T 1mkm_A 13 ILDFIVK--NPGDVSVSEIAEK----FNMS---VSNAYKYMVVLEEKGFVLRKKDKRYVPGYK 66 (249)
T ss_dssp HHHHHHH--CSSCBCHHHHHHH----TTCC---HHHHHHHHHHHHHTTSEEECTTSCEEECTH
T ss_pred HHHHHHh--CCCCCCHHHHHHH----HCcC---HHHHHHHHHHHHHCCcEEECCCCcEEECHH
Confidence 5666654 2346777766654 4454 45778889999999999997 578998764
No 102
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=22.70 E-value=33 Score=27.55 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCChhhh
Q 024102 7 KWTAEEEEALLAGVAKHGPGKWKNI 31 (272)
Q Consensus 7 ~WT~eEd~~L~~GV~k~G~GkW~~I 31 (272)
+|+++|+..|+.+-.+||. +|.+-
T Consensus 81 ~~p~e~~~rv~~~h~~~gn-~~~~~ 104 (121)
T 2juh_A 81 PVPQDLLDRVLAAHAYWSQ-QQGKQ 104 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HHCCS
T ss_pred CCCHHHHHHHHHHHHHHcc-chhcc
Confidence 8999999999999999997 88773
No 103
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=21.88 E-value=36 Score=23.97 Aligned_cols=40 Identities=5% Similarity=0.100 Sum_probs=29.1
Q ss_pred HHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhh
Q 024102 128 ISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRL 167 (272)
Q Consensus 128 I~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrl 167 (272)
|..+.+.-|.|..+|..++..+..+.+..+..|...++.+
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREV 51 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 5566677899999999998876667666666666665543
No 104
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=21.28 E-value=1.8e+02 Score=21.95 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHhcC-------cCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeeccccccC
Q 024102 119 KYNAMIFEAISTLK-------DANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNCYKIR 183 (272)
Q Consensus 119 ~y~~MI~EAI~~Lk-------er~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK~sykl~ 183 (272)
.|..+.-+.+..|. ++-|.++.-+......++ + .+++..-|..+++.|.|+...+-..++
T Consensus 63 ~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~--~---~~~~~~ll~~l~~~g~l~~~~~~v~Lp 129 (135)
T 2v9v_A 63 RYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRL--P---ARVYQALLEEWSREGRLQLAANTVALA 129 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTS--C---HHHHHHHHHHHHHTTSEEECSSEEEET
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccC--C---HHHHHHHHHHHHHCCCEEecCCEEECC
Confidence 35667666777776 689999999988773222 2 456677789999999999999888875
No 105
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=21.15 E-value=96 Score=22.67 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 024102 119 KYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (272)
Q Consensus 119 ~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~~GkLvkvK 177 (272)
++.+||.|.|..|+.+.-.+..- ++..|..|++.+-|....
T Consensus 27 ~h~~Lv~ev~~ql~~rF~p~~~~------------------IKk~IE~LIereYl~R~~ 67 (77)
T 3tdu_C 27 KHQQLLGEVLTQLSSRFKPRVPV------------------IKKCIDILIEKEYLERVD 67 (77)
T ss_dssp EHHHHHHHHHHHHTTTCCCCHHH------------------HHHHHHHHHHTTSEEEET
T ss_pred eHHHHHHHHHHHHhCcCCCCHHH------------------HHHHHHHHHhhhHhhcCC
Confidence 46777777777777554444444 444555666677666654
Done!