BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024103
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 264 bits (674), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 138/269 (51%), Positives = 183/269 (68%), Gaps = 5/269 (1%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G+VPGLA I+VG+R DS+ YV+ K KA EVG+ S E + +++ + + N D
Sbjct: 35 GRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDP 94
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
+ +GI+VQLPLP+HL+E + ++ + KD D P+N+G L +GREP F PCT KG I
Sbjct: 95 NCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIV 154
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT--SEADIV 183
LL R G+E+ GK AVV+GRSNIVG P + LL + +ATV+IVH+ T + I ADIV
Sbjct: 155 LLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIV 214
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT 243
IAA G V+G W+K GA V+DVGT PV DPS + GYRL+GDVC+EEA A+ I+
Sbjct: 215 IAAMGQPGYVKGEWIKEGAAVVDVGTTPVP---DPSRKDGYRLVGDVCFEEAAARAAWIS 271
Query: 244 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
PVPGGVGPMT+AMLL NTL++ K A G +
Sbjct: 272 PVPGGVGPMTIAMLLENTLEAFKAALGVS 300
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 234 bits (596), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 176/264 (66%), Gaps = 5/264 (1%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G P LA++ VG R DS Y+ K+KA EE+GIK+ + TE EV+ +++ N+DS
Sbjct: 33 GFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDS 92
Query: 66 SINGILVQLPLPQH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
+++G LVQLPL ++ ++++A++ EKDVDG +N G LA FIPCTPKGC
Sbjct: 93 TVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGC 152
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIV 183
+EL+ +GV I G++AVV+GRS IVG P LL ++ATV+ H+ T + ++ ++ DI+
Sbjct: 153 LELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDIL 212
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT 243
+ A G +V+G W+KPGA+V+D C ++ D G +++GDV Y+EA AS IT
Sbjct: 213 VVATGQPEMVKGEWIKPGAIVID---CGINYVPDDKKPNGRKVVGDVAYDEAKERASFIT 269
Query: 244 PVPGGVGPMTVAMLLSNTLDSAKR 267
PVPGGVGPMTVAML+ +T++SAKR
Sbjct: 270 PVPGGVGPMTVAMLMQSTVESAKR 293
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 233 bits (595), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 176/264 (66%), Gaps = 5/264 (1%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G P LA++ VG R DS Y+ K+KA EE+GIK+ + TE EV+ +++ N+DS
Sbjct: 33 GFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDS 92
Query: 66 SINGILVQLPLPQH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
+++G LVQLPL ++ ++++A++ EKDVDG +N G LA FIPCTPKGC
Sbjct: 93 TVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGC 152
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIV 183
+EL+ +GV I G++AVV+GRS IVG P LL ++ATV+ H+ T + ++ ++ DI+
Sbjct: 153 LELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDIL 212
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT 243
+ A G +V+G W+KPGA+V+D C ++ D G +++GDV Y+EA AS IT
Sbjct: 213 VVATGQPEMVKGEWIKPGAIVID---CGINYVPDDKKPNGRKVVGDVAYDEAKERASFIT 269
Query: 244 PVPGGVGPMTVAMLLSNTLDSAKR 267
PVPGGVGPMTVAML+ +T++SAKR
Sbjct: 270 PVPGGVGPMTVAMLMQSTVESAKR 293
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/263 (49%), Positives = 167/263 (63%), Gaps = 11/263 (4%)
Query: 7 KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
+VPGLAVILVG SQ YV +K K CEEVG S + ++D++L + N D +
Sbjct: 34 RVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPA 93
Query: 67 INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
I+GILVQLPLP HLD +L+ + +KDVDGFHP NIG LA R PL PCTPKG + L
Sbjct: 94 IDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQ--RMPLLRPCTPKGIMTL 151
Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
L +G ++ G +AVV+G SNIVG P +L L TV++ H T++ S AD+V+ A
Sbjct: 152 LASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVA 211
Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP 246
AG LV+G W+K GA+V+DVG + + RL+GDV YE A + AS ITPVP
Sbjct: 212 AGKPGLVKGEWIKEGAIVIDVGI---------NRQADGRLVGDVEYEVAAQRASWITPVP 262
Query: 247 GGVGPMTVAMLLSNTLDSAKRAY 269
GGVGPMT A LL NTL +A+ +
Sbjct: 263 GGVGPMTRACLLENTLHAAEHLH 285
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 173/265 (65%), Gaps = 10/265 (3%)
Query: 3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
KS G LAVILVG+ SQTYV++K KACEE GIKS+V + T++E+L ++ N
Sbjct: 28 KSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLN 87
Query: 63 QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
D S++GILVQLPLP H+ + IL+++ KDVDGFHP+N+G L + G E F+PCTP G
Sbjct: 88 HDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLG 146
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
+LL +++ GK+AV+IG SNIVG P + L ATVS+ H TK+ T +AD+
Sbjct: 147 VXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLNAGATVSVCHIKTKDLSLYTRQADL 206
Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
+I AAG NL+R +K G +V+DVG ++ +++GDV +EE + +S I
Sbjct: 207 IIVAAGCVNLLRSDXVKEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYI 257
Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKR 267
TPVPGGVGP T+A LL NT+ SAK
Sbjct: 258 TPVPGGVGPXTIAXLLENTVKSAKN 282
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 159/258 (61%), Gaps = 11/258 (4%)
Query: 7 KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
+ PGLAV+LVG SQ YV +K KACEEVG S + + +E E+L + N D++
Sbjct: 32 RAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNT 91
Query: 67 INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
I+GILVQLPLP +D K+L+ + +KDVDGFHP N+G L R P PCTP+G + L
Sbjct: 92 IDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRA--PRLRPCTPRGIVTL 149
Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
L R ++ G NAVVIG SNIVG P S+ L T ++ H TKN AD++I A
Sbjct: 150 LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVA 209
Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP 246
G + G W+K GA+V+DVG E G +++GDV +E+A + AS ITPVP
Sbjct: 210 VGKPGFIPGDWIKEGAIVIDVGIN--------RLENG-KVVGDVVFEDAAKRASYITPVP 260
Query: 247 GGVGPMTVAMLLSNTLDS 264
GGVGPMTVA L+ NTL +
Sbjct: 261 GGVGPMTVATLIENTLQA 278
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 203 bits (516), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
P L I+VG S+TYV +K KAC +VGI S V + TE E+L + N DSS++
Sbjct: 35 PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVH 94
Query: 69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
ILVQLPLP H+++ ++ ++ EKDVDGFHP N+G L +R ++ L CTPKG + +L
Sbjct: 95 AILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPKGIMTMLR 153
Query: 129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
G++ G AVV+G SN+VG P S LL ATV+ H T + + T++ADI+I A G
Sbjct: 154 EYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVG 213
Query: 189 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
N + +K GAVV+DVG VD +++GDV + + ITPVPGG
Sbjct: 214 KPNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAITPVPGG 263
Query: 249 VGPMTVAMLLSNTLDSAKR 267
VGPMT+ LL NT A+
Sbjct: 264 VGPMTITELLYNTFQCAQE 282
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/270 (40%), Positives = 161/270 (59%), Gaps = 12/270 (4%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K G+ P LA ILVG+ S TYVR K AC VG+ S+ E T +++L +
Sbjct: 46 LKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEK 105
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N + ++GIL+Q P+P +DE DA+SL KDVDG L G +AM E + TP
Sbjct: 106 LNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATP 163
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
G + +L + +EI GK+AVV+GRS I+G P +++L + +ATV+I H+ T+N ++ +A
Sbjct: 164 AGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVKQA 223
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DI++ A G A L++ W+K GAVV+D G P D +GD+ + +AS
Sbjct: 224 DIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDGGG----------VGDIQLQGIEEIAS 273
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
TPVPGGVGPMT+ L+ T+++A++A G
Sbjct: 274 AYTPVPGGVGPMTITTLIRQTVEAAEKALG 303
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/266 (41%), Positives = 152/266 (57%), Gaps = 15/266 (5%)
Query: 4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQ 63
+ G+ PGL ILVG+ SQ YVR K C +VGI SI + + + + N
Sbjct: 28 AAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNA 87
Query: 64 DSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
+ G +VQLPLP+HLDE L+ V KD DG HP N+G L + PL PCTP+G
Sbjct: 88 NPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLGTPAPL--PCTPRGI 145
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEAD 181
+ LL R + I G + VVIGR VG P LLL R +ATV++ H T++ +T +AD
Sbjct: 146 VHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQAD 205
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
IV+AA GVA+L+ ++PGA V+DVG D L+GDV + + LA
Sbjct: 206 IVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDDG----------LVGDV-HPDVWELAGH 254
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKR 267
++P PGGVGP+T A LL+N ++ A+R
Sbjct: 255 VSPNPGGVGPLTRAFLLTNVVELAER 280
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 141/262 (53%), Gaps = 17/262 (6%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G P L +I +G+ + Y R KI+ +++GI + ++ D +D +L + + +D
Sbjct: 25 GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIAVDLEKYDDISMKD-LLKRIDDLAKDP 83
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
INGI+++ PLP+ D +I+ + KDVD P N G +A+ RE +P TP+ I+
Sbjct: 84 QINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIAL-NRE-FLVPATPRAVID 141
Query: 126 LLIRSGVEIMGKNAV-VIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVI 184
++ G +N V ++ RS +VG P S++L + TVS+ H+ TK+ +T + IV+
Sbjct: 142 IMDYYGYH---ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVV 198
Query: 185 AAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP 244
A G + + PG+VV+DVG V+ V +GD +E+ ITP
Sbjct: 199 VAVGRPGFLNREMVTPGSVVIDVGINYVNDKV----------VGDANFEDLSEYVEAITP 248
Query: 245 VPGGVGPMTVAMLLSNTLDSAK 266
VPGGVGP+T +L N + +A+
Sbjct: 249 VPGGVGPITATNILENVVKAAE 270
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 118/288 (40%), Gaps = 44/288 (15%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G+ P L L ++ Y K E +G + + D +D + A+ N D
Sbjct: 34 GQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIED---KDFLEEAIIQANGDD 90
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPL-------NIGNLAMRGREPLFIPC 118
S+NGI+V P+ + + + V EKDV+G + + N+ L R +PC
Sbjct: 91 SVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPC 150
Query: 119 TPKGCIEL---------LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 169
TP +++ L+ G + GK +VI RS IVG P + LL ATV V
Sbjct: 151 TPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDV- 209
Query: 170 TKNPEQITSEADIVIAAAGVANLVRGS--WLKPGAVVLDVGTCPVDVSVDPSCEYG---- 223
N ++ T + + V +L S LK ++ DV V PS Y
Sbjct: 210 -NNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV-----PSENYKFPTE 263
Query: 224 YRLMGDVCY---------EEAMRLASVITPVPGGVGPMTVAMLLSNTL 262
Y G VC ++ AS+ P+ G V T+AMLL N L
Sbjct: 264 YIKEGAVCINFACTKNFSDDVKEKASLYVPMTGKV---TIAMLLRNML 308
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 65 SSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG 104
++ ++ L +PQ+LD+ KIL+A+ + ++ F P + G
Sbjct: 78 KKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFG 117
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 152 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 208
T+LLLQ H + + + L + E+I S+A I + A V L WL P +++
Sbjct: 1490 TNLLLQAHLSRMQLSAELQSDTEEILSKA-IRLIQACVDVLSSNGWLSPALAAMELA 1545
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 152 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 208
T+LLLQ H + + + L + E+I S+A I + A V L WL P +++
Sbjct: 1490 TNLLLQAHLSRMQLSAELQSDTEEILSKA-IRLIQACVDVLSSNGWLSPALAAMELA 1545
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 65 SSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG 104
++ ++ L PQ LD+ KIL+A+ + ++ F P + G
Sbjct: 74 KKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 113
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 65 SSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG 104
++ ++ L PQ LD+ KIL+A+ + ++ F P + G
Sbjct: 78 KKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 117
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 65 SSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG 104
++ ++ L PQ LD+ KIL+A+ + ++ F P + G
Sbjct: 78 KKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 117
>pdb|3NT2|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT2|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT4|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT4|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT5|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
pdb|3NT5|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
Length = 344
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 26 VRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS-----SINGILVQLPLPQHL 80
+ NK+ E V + + E A E LNA N DS +++ +LV P H
Sbjct: 21 ITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH- 79
Query: 81 DEGKILDAVSLEKDVDGFHPL 101
E +L A+ +K V PL
Sbjct: 80 -ESSVLKAIKAQKYVFCEKPL 99
>pdb|1OSX|A Chain A, Solution Structure Of The Extracellular Domain Of Blys
Receptor 3 (Br3)
Length = 61
Score = 27.7 bits (60), Expect = 7.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 104 GNLAMRGRE-PLFIPCTPKGCIELLIRSGV 132
G ++RGR+ P PC P C +LL+R V
Sbjct: 4 GPRSLRGRDAPAPTPCVPAECFDLLVRHCV 33
>pdb|3MZ0|A Chain A, Crystal Structure Of Apo Myo-Inositol Dehydrogenase From
Bacillus Subtilis
Length = 344
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 26 VRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS-----SINGILVQLPLPQHL 80
+ NK+ E V + + E A E LNA N DS +++ +LV P H
Sbjct: 21 ITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH- 79
Query: 81 DEGKILDAVSLEKDVDGFHPL 101
E +L A+ +K V PL
Sbjct: 80 -ESSVLKAIKAQKYVFCEKPL 99
>pdb|1P0T|A Chain A, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|B Chain B, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|C Chain C, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|D Chain D, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|E Chain E, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|F Chain F, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|G Chain G, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|H Chain H, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|I Chain I, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|J Chain J, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|K Chain K, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|L Chain L, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|M Chain M, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|N Chain N, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|O Chain O, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|P Chain P, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|Q Chain Q, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|R Chain R, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|S Chain S, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|T Chain T, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|U Chain U, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|V Chain V, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|W Chain W, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|X Chain X, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|Y Chain Y, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|Z Chain Z, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|0 Chain 0, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|1 Chain 1, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|2 Chain 2, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|3 Chain 3, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|4 Chain 4, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|5 Chain 5, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|6 Chain 6, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|7 Chain 7, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|8 Chain 8, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|9 Chain 9, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|AA Chain a, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|BB Chain b, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|CC Chain c, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|DD Chain d, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|EE Chain e, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|FF Chain f, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|GG Chain g, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|HH Chain h, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|II Chain i, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|JJ Chain j, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|KK Chain k, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|LL Chain l, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|MM Chain m, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|NN Chain n, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|OO Chain o, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|PP Chain p, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|QQ Chain q, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|RR Chain r, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|SS Chain s, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|TT Chain t, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|UU Chain u, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|VV Chain v, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|WW Chain w, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|XX Chain x, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
Length = 63
Score = 27.3 bits (59), Expect = 8.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 104 GNLAMRGRE-PLFIPCTPKGCIELLIRSGV 132
G ++RGR+ P PC P C +LL+R V
Sbjct: 4 GPRSLRGRDAPAPTPCVPAECFDLLVRHCV 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,934,769
Number of Sequences: 62578
Number of extensions: 313490
Number of successful extensions: 1384
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1338
Number of HSP's gapped (non-prelim): 36
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)