BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024104
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BTG6|CL049_MOUSE UPF0454 protein C12orf49 homolog OS=Mus musculus PE=2 SV=1
Length = 205
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 39 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCV 95
C+ +VQG++LL+D+ GYVC+ + CC +++ C GC L + CC +YEYCV
Sbjct: 75 CRNSVQGKHLLTDELGYVCERKDLLANG-CCDVSVPSTKQYCCDGC-LANGCCEAYEYCV 132
Query: 96 SCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 147
SCC+ P++ L E+ LN +A F+ C +CR +S+SV HEN Y
Sbjct: 133 SCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186
>sp|Q6GNT2|CL049_XENLA UPF0454 protein C12orf49 homolog OS=Xenopus laevis PE=2 SV=1
Length = 205
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 39 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCV 95
C+ +VQG+ L++DD GY+C+ + CC + +SC+ C L + CC+ YE+CV
Sbjct: 75 CRNSVQGKLLVTDDMGYICERKELLANG-CCNINVASTKLYSCETC-LPNGCCSVYEFCV 132
Query: 96 SCCVNPARTLK-EQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAYLSDF-H 152
SCC+ P + L+ E+ LN +A F+ C +CR +S+SV HEN Y +
Sbjct: 133 SCCLQPNKQLQLERFLNKAAVAFQNLFQAVEDHFELCLAKCRTSSQSVQHENTYRNPIAK 192
Query: 153 HCF 155
HC+
Sbjct: 193 HCY 195
>sp|Q17QN8|CL049_BOVIN UPF0454 protein C12orf49 homolog OS=Bos taurus PE=2 SV=1
Length = 205
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 39 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCPEK---GEKFSCQGCNLLSQCCNSYEYCV 95
C+ ++QG++L++D+ GYVC+ + CC +++ C GC L S CC++YEYCV
Sbjct: 75 CRNSIQGKHLITDELGYVCERRDLLVNG-CCNVNVPGTKQYCCDGC-LSSGCCSAYEYCV 132
Query: 96 SCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 147
SCC+ P + L E+ LN +A F+ C +CR +S+SV HEN Y
Sbjct: 133 SCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186
>sp|Q9H741|CL049_HUMAN UPF0454 protein C12orf49 OS=Homo sapiens GN=C12orf49 PE=2 SV=1
Length = 205
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 39 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCV 95
C+ ++QG++L++D+ GYVC+ + CC +++ C GC + CC++YEYCV
Sbjct: 75 CRNSIQGKHLITDELGYVCERKDLLVNG-CCNVNVPSTKQYCCDGC-WPNGCCSAYEYCV 132
Query: 96 SCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 147
SCC+ P + L E+ LN +A F+ C +CR +S+SV HEN Y
Sbjct: 133 SCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186
>sp|Q5ZJE4|CL049_CHICK UPF0454 protein C12orf49 homolog OS=Gallus gallus GN=RCJMB04_18o22
PE=2 SV=1
Length = 205
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 39 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCC---PEKGEKFSCQGCNLLSQCCNSYEYCV 95
C+ +VQG+ L++D+ GY+C+ + CC + +SC C L + CC+ YEYCV
Sbjct: 75 CRNSVQGKLLITDELGYICERKDLLVNG-CCNVNVPSTKLYSCDSC-LPNGCCSVYEYCV 132
Query: 96 SCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 147
SCC+ P++ L E+ LN +A F+ C +CR +S+SV HEN Y
Sbjct: 133 SCCLQPSKQHLLERFLNRAAMAFQNLFMAVEDRFELCLAKCRTSSQSVQHENTY 186
>sp|Q503V3|CL049_DANRE UPF0454 protein C12orf49 homolog OS=Danio rerio GN=zgc:110063 PE=2
SV=1
Length = 199
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 39 CKTTVQGRYLLSDDNGYVCDAVSMDPQSRCC---PEKGEKFSCQGCNLLSQCCNSYEYCV 95
C+ ++QG+ LL+D+ GYVC+ + CC ++ C+ C L + CC+ YEYCV
Sbjct: 69 CRNSIQGKSLLTDELGYVCERKDLLVNG-CCNVNAPSSSQYVCKSC-LSNGCCSIYEYCV 126
Query: 96 SCCVNPART-LKEQVLNVKIAKPTTAGTYGSV---FDFCAGRCRHNSESVVHENAY 147
SCC+ P + L E+ LN A + +V F+ C +CR +S+SV HEN Y
Sbjct: 127 SCCLQPDKQPLLERFLNR--AAEGFQNLFTAVEDHFELCLAKCRTSSQSVQHENTY 180
>sp|Q09328|MGT5A_HUMAN Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens
GN=MGAT5 PE=1 SV=1
Length = 741
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 173 LSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKYMSCKRGCLASMGADQPA 232
LS + V + G+SC VC+ S C + LN+ + + KY K C Q +
Sbjct: 635 LSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKDKDMLKY---KVTC-------QSS 684
Query: 233 EVADD--APSNLNPT--ACLYTRIQSMLSCDGSHRHTRRLCPC 271
E+A D PS +P C++ + SC G+H +R+CPC
Sbjct: 685 ELAKDILVPS-FDPKNKHCVFQGDLLLFSCAGAHPRHQRVCPC 726
>sp|Q8R4G6|MGT5A_MOUSE Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Mus musculus
GN=Mgat5 PE=2 SV=1
Length = 740
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 173 LSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKYMSCKRGCLASMGADQPA 232
LS + V + G+SC VC+ S C + LN+ + + KY K C Q +
Sbjct: 634 LSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKY---KVTC-------QSS 683
Query: 233 EVADD--APSNLNPTA--CLYTRIQSMLSCDGSHRHTRRLCPC 271
E+ D PS P + C++ + SC G+H +R+CPC
Sbjct: 684 ELYKDILVPS-FYPKSKHCVFQGDLLLFSCAGAHPTHQRICPC 725
>sp|Q08834|MGT5A_RAT Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Rattus
norvegicus GN=Mgat5 PE=1 SV=1
Length = 740
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 173 LSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKYMSCKRGCLASMGADQPA 232
LS + V + G+SC VC+ S C + LN+ + + KY K C Q +
Sbjct: 634 LSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKY---KVIC-------QSS 683
Query: 233 EVADD--APSNLNPTA--CLYTRIQSMLSCDGSHRHTRRLCPC 271
E+ D PS P + C++ + SC G+H +R+CPC
Sbjct: 684 ELYKDILVPS-FYPKSKHCVFQGDLLLFSCAGAHPTHQRICPC 725
>sp|Q3T4C0|COX2_SMICU Cytochrome c oxidase subunit 2 OS=Smittium culisetae GN=cox2 PE=3
SV=1
Length = 254
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 149 SDFHHCFSMPSNASGAGVTQLEGRLSGISVIIGRQG 184
SD H F++PS G + L GRL+GIS + R+G
Sbjct: 178 SDVIHSFAVPS--LGLKIDALPGRLNGISTYVEREG 211
>sp|O08537|ESR2_MOUSE Estrogen receptor beta OS=Mus musculus GN=Esr2 PE=1 SV=3
Length = 530
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 38 FCKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCPEKGEKFSCQGCNL-------LSQCCNS 90
F K ++QG N Y+C A + +C +K + SCQ C L + +C +
Sbjct: 172 FFKRSIQGH------NDYICPATN-----QCTIDKNRRKSCQACRLRKCYEVGMVKCGSR 220
Query: 91 YEYCVSCCVNPARTLKEQVLNVKIAKPTTAGT 122
E C V R+ EQV + AK T+ T
Sbjct: 221 RERCGYRIVRRQRSASEQVHCLNKAKRTSGHT 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,606,309
Number of Sequences: 539616
Number of extensions: 3841716
Number of successful extensions: 9927
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9900
Number of HSP's gapped (non-prelim): 25
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)