Query 024104
Match_columns 272
No_of_seqs 135 out of 147
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3136 Uncharacterized conser 100.0 6.5E-56 1.4E-60 382.1 4.0 167 1-168 1-195 (196)
2 PF10218 DUF2054: Uncharacteri 100.0 1.8E-51 3.8E-56 344.2 6.8 124 31-155 2-131 (131)
3 PF15024 Glyco_transf_18: Glyc 100.0 4.9E-32 1.1E-36 269.2 7.7 121 126-271 437-559 (559)
4 PF05176 ATP-synt_10: ATP10 pr 37.7 20 0.00044 33.4 1.8 26 26-57 205-230 (252)
5 PHA01399 membrane protein P6 26.7 55 0.0012 30.3 2.6 28 2-29 56-83 (242)
6 PF07172 GRP: Glycine rich pro 23.1 75 0.0016 25.6 2.5 12 15-26 13-25 (95)
7 PF12273 RCR: Chitin synthesis 21.7 1.1E+02 0.0024 25.2 3.3 9 24-32 22-30 (130)
8 PF04601 DUF569: Protein of un 15.6 89 0.0019 27.1 1.5 20 39-59 12-32 (142)
9 cd02340 ZZ_NBR1_like Zinc fing 11.9 1.5E+02 0.0032 20.3 1.5 23 72-101 11-33 (43)
10 PF08120 Toxin_32: Tamulustoxi 11.5 65 0.0014 21.4 -0.4 16 126-141 3-18 (35)
No 1
>KOG3136 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.5e-56 Score=382.14 Aligned_cols=167 Identities=51% Similarity=0.962 Sum_probs=152.6
Q ss_pred CCccccchhhHHHHHHHHHHHHH-H----------------HHhhcccCCCCC---c---cccccccCCeEEecCCCccc
Q 024104 1 MPKSRLNLLFLFFQLLTLQFLSI-I----------------SAIRKDIGFQET---P---FCKTTVQGRYLLSDDNGYVC 57 (272)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~d~~~~~~---~---~CrntvQg~~li~Dd~G~vC 57 (272)
|.|.+..++++..+|+..+.++- + +.||+|++|+++ + +||||||||+||+||+||||
T Consensus 1 lrkr~v~~l~~vLlLiygf~~~f~~e~~a~~~~~~~v~~~~~pi~w~~qfl~~~~sR~~~~CRnsvQGr~lisDe~G~VC 80 (196)
T KOG3136|consen 1 LRKRGVSLLFLVLLLIYGFLFPFRVEERAVRDRLLQVHDHNSPIRWDIQFLEENSSRPSNSCRNSVQGRYLISDEEGNVC 80 (196)
T ss_pred CcceehhHHHHHHHHHHHccChhhhhhhhhhhhhhhhhccCCCcchhhhhccccCCCcchhhhhhhcceeEeeccccchH
Confidence 67888888888777777776665 6 899999999988 3 79999999999999999999
Q ss_pred cCcccCCCCCCCCCC---CceEeccCCCCCCCCcccCccccccccCCCcch-HHHHhhhhccCCcccccccchhhhhhhh
Q 024104 58 DAVSMDPQSRCCPEK---GEKFSCQGCNLLSQCCNSYEYCVSCCVNPARTL-KEQVLNVKIAKPTTAGTYGSVFDFCAGR 133 (272)
Q Consensus 58 ~r~~l~~~~GCC~~~---~~~~sC~~C~~~~~CC~~YE~CVSCCl~P~k~~-~e~~l~~~~~~~~~~~~~~d~Fe~C~~k 133 (272)
.|++++ .|||||.. +++|+|+|||..++||++|||||||||+|.|++ ||++|+++++++.++++++||||+|++|
T Consensus 81 ~r~~~l-~ngCCn~~~p~~~~ysC~gCn~~s~CC~~YEyCVSCCL~P~kQ~LLErvl~a~va~~~~f~tv~dhFelCl~k 159 (196)
T KOG3136|consen 81 DRLLEL-RNGCCNWKGPSTKRYSCHGCNILSQCCNSYEYCVSCCLNPSKQTLLERVLKAKVAKPATFGTVKDHFELCLGK 159 (196)
T ss_pred HHHHHH-hcCCccccCCCcceeecCCCccccchhhHHHHHHHHHcCCchhHHHHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 999998 79999985 679999999998999999999999999999864 5999999999999999999999999999
Q ss_pred ccccchhhhhhhhcccc-cCcccCCCCCCCCCCccc
Q 024104 134 CRHNSESVVHENAYLSD-FHHCFSMPSNASGAGVTQ 168 (272)
Q Consensus 134 CRT~s~sv~heN~Y~~~-~~~C~~~~~~~~g~~~~~ 168 (272)
|||+|+||+|||+|+|+ .|||||.+.|.||++.+|
T Consensus 160 CRtnS~SV~HEN~Yrdp~akhCyglt~~eS~~~l~p 195 (196)
T KOG3136|consen 160 CRTNSESVVHENAYRDPEAKHCYGLTSNESGANLTP 195 (196)
T ss_pred hcCCchhheecccccChHHHhhcccccccCccccCC
Confidence 99999999999999997 699999999999988544
No 2
>PF10218 DUF2054: Uncharacterized conserved protein (DUF2054); InterPro: IPR019352 This family of proteins includes those belonging to UPF0454. It is conserved from nematodes to plants and is functionally uncharacterised. It contains 14 conserved cysteines, three of which are CC-dimers.
Probab=100.00 E-value=1.8e-51 Score=344.23 Aligned_cols=124 Identities=43% Similarity=0.935 Sum_probs=114.7
Q ss_pred cCCCCCccccccccCCeEEecCCCccccCcccCCCCCCCCC---CCceEeccCCCCCCCCcccCccccccccCCCcc-hH
Q 024104 31 IGFQETPFCKTTVQGRYLLSDDNGYVCDAVSMDPQSRCCPE---KGEKFSCQGCNLLSQCCNSYEYCVSCCVNPART-LK 106 (272)
Q Consensus 31 ~~~~~~~~CrntvQg~~li~Dd~G~vC~r~~l~~~~GCC~~---~~~~~sC~~C~~~~~CC~~YE~CVSCCl~P~k~-~~ 106 (272)
......+.|||||||+.||+||+||||+|++|+ +||||+. .++||+|++||..++||++|||||||||+|+|+ +|
T Consensus 2 ~~~~~~~~CrntvQG~~li~Dd~G~VC~r~~l~-~nGCC~~~~~~~~r~sC~~Cn~~~~CC~~YE~CVSCCL~P~k~~~l 80 (131)
T PF10218_consen 2 RSSSPSQSCRNTVQGRHLIVDDRGYVCSRSDLL-VNGCCNVNAPGTKRYSCDGCNLSSGCCSIYEYCVSCCLHPDKQPLL 80 (131)
T ss_pred CCCCCcccccccccCCeEEECCCCcccCHHHcc-cCCCCCCCCCCceeEECCCcCCCCCcccchhhhhhhccChhhhhHH
Confidence 344556889999999999999999999999996 7999994 689999999988999999999999999999975 56
Q ss_pred HHHh-hhhccCCcccccccchhhhhhhhccccchhhhhhhhccc-ccCccc
Q 024104 107 EQVL-NVKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAYLS-DFHHCF 155 (272)
Q Consensus 107 e~~l-~~~~~~~~~~~~~~d~Fe~C~~kCRT~s~sv~heN~Y~~-~~~~C~ 155 (272)
|++| +++.+++.++++|+|+||||++||||+|+||+|||+|++ +.||||
T Consensus 81 e~~l~~~~~~~~~~~~~~~d~FelC~~kCRTsS~SV~HEN~Yr~p~~k~Cy 131 (131)
T PF10218_consen 81 ERVLRKAAVARQRLFGSVTDQFELCLAKCRTSSQSVQHENTYRDPDAKHCY 131 (131)
T ss_pred HHHHHHhhhcccceehhhccHHHHHHHHhcCCchhceecccccCcccccCC
Confidence 8898 888899999999999999999999999999999999999 589998
No 3
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=99.97 E-value=4.9e-32 Score=269.22 Aligned_cols=121 Identities=30% Similarity=0.608 Sum_probs=107.9
Q ss_pred hhhhhhhhccccchhhhhhhhcccccCcccCCCCCCCCCCcccccccccceEEEeCCCCCcHHHHHHhcCCceecCCCcc
Q 024104 126 VFDFCAGRCRHNSESVVHENAYLSDFHHCFSMPSNASGAGVTQLEGRLSGISVIIGRQGESCDSVCKSSGQSCVLNKLIL 205 (272)
Q Consensus 126 ~Fe~C~~kCRT~s~sv~heN~Y~~~~~~C~~~~~~~~g~~~~~~~ppls~l~vv~~~~GqSC~~aC~~~gl~CepsfF~~ 205 (272)
+||+ |.+|||+|+|+|+++|+||.+.. .|||+++|+||++++||||+++|+++||+|||+||++
T Consensus 437 P~ef------T~egmLeRv~~~ie~q~fC~~~~----------~WPPlsaL~vv~~~~GqSC~~~C~~~gliCEPsfFp~ 500 (559)
T PF15024_consen 437 PYEF------TCEGMLERVNALIEKQDFCDKSV----------RWPPLSALQVVLGEPGQSCKDACQSKGLICEPSFFPF 500 (559)
T ss_pred Cccc------CHHHHHHHHHHHHHhhhhccccC----------CCCChhheEEEEcCCCCCHHHHHHhhCcEEcHhhhhh
Confidence 5899 99999999999999999999865 4899999999999999999999999999999999999
Q ss_pred ccchHHHHHh-ccccccccccCCCCCCCcccccCCCC-CCCCceeecCCCCccccCCCCCCCceeccC
Q 024104 206 LNQCEIIQKY-MSCKRGCLASMGADQPAEVADDAPSN-LNPTACLYTRIQSMLSCDGSHRHTRRLCPC 271 (272)
Q Consensus 206 IN~c~~l~k~-~~C~~~C~~~~g~d~pa~vv~~ap~h-l~p~~C~lq~~~llFSCags~~~~rRLCPC 271 (272)
||++++|+|+ ++|++.. . +....||.+ ..+++|++|++++||||+|+|+++||||||
T Consensus 501 IN~~~~l~r~~~~C~~~e-------~--~~~~~aP~f~~~~~~C~lQ~~~lLFSCags~~~~rRLCPC 559 (559)
T PF15024_consen 501 INRCDELQRLGVNCDSTE-------S--EMSHLAPAFSPNPGHCVLQSDPLLFSCAGSHPSYRRLCPC 559 (559)
T ss_pred hccHHHHHhhCCCCCccc-------c--cCcccCCCCCCCCCeeeeCCCCceeecCCCCCCCCccCCC
Confidence 9999999997 6777421 1 123456663 467899999999999999999999999999
No 4
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=37.69 E-value=20 Score=33.38 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.2
Q ss_pred HhhcccCCCCCccccccccCCeEEecCCCccc
Q 024104 26 AIRKDIGFQETPFCKTTVQGRYLLSDDNGYVC 57 (272)
Q Consensus 26 ~~~~d~~~~~~~~CrntvQg~~li~Dd~G~vC 57 (272)
.||+.++ +.|+.-|-++|+|++|.|-
T Consensus 205 ~iRe~Lg------i~N~~~GYvyLVD~~grIR 230 (252)
T PF05176_consen 205 DIREALG------INNSYVGYVYLVDPNGRIR 230 (252)
T ss_pred HHHHHhC------CCCCCcCeEEEECCCCeEE
Confidence 5666666 8999999999999999883
No 5
>PHA01399 membrane protein P6
Probab=26.72 E-value=55 Score=30.27 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=19.3
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHhhc
Q 024104 2 PKSRLNLLFLFFQLLTLQFLSIISAIRK 29 (272)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (272)
||-+..|+.|+..+..|+|||++.+|=|
T Consensus 56 s~ig~il~~il~~~~awf~fpa~IAIIK 83 (242)
T PHA01399 56 SKIGIILIIILIIIAAWFFFPAFAAFLQ 83 (242)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777789999555543
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.05 E-value=75 Score=25.59 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=5.9
Q ss_pred HHHHHHHHH-HHH
Q 024104 15 LLTLQFLSI-ISA 26 (272)
Q Consensus 15 ~~~~~~~~~-~~~ 26 (272)
|.+++|++| |+|
T Consensus 13 LA~lLlisSevaa 25 (95)
T PF07172_consen 13 LAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHhhhhh
Confidence 334444566 554
No 7
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.68 E-value=1.1e+02 Score=25.20 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=5.1
Q ss_pred HHHhhcccC
Q 024104 24 ISAIRKDIG 32 (272)
Q Consensus 24 ~~~~~~d~~ 32 (272)
+.+-|+..|
T Consensus 22 ~~rRR~r~G 30 (130)
T PF12273_consen 22 HNRRRRRRG 30 (130)
T ss_pred HHHHHhhcC
Confidence 555555555
No 8
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=15.63 E-value=89 Score=27.11 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=15.4
Q ss_pred ccccccCCeEEecCCCc-cccC
Q 024104 39 CKTTVQGRYLLSDDNGY-VCDA 59 (272)
Q Consensus 39 CrntvQg~~li~Dd~G~-vC~r 59 (272)
-|+ +.|++|.|||.|. |..+
T Consensus 12 LRS-~~~kYL~ADeDg~~Vs~~ 32 (142)
T PF04601_consen 12 LRS-HHGKYLHADEDGEGVSQD 32 (142)
T ss_pred EEe-cCCCEEEEcCCCCeEEEC
Confidence 467 9999999999984 4443
No 9
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=11.87 E-value=1.5e+02 Score=20.33 Aligned_cols=23 Identities=30% Similarity=0.850 Sum_probs=18.0
Q ss_pred CCceEeccCCCCCCCCcccCccccccccCC
Q 024104 72 KGEKFSCQGCNLLSQCCNSYEYCVSCCVNP 101 (272)
Q Consensus 72 ~~~~~sC~~C~~~~~CC~~YE~CVSCCl~P 101 (272)
.+.||.|..|. .|..|..|=..+
T Consensus 11 ~G~ry~C~~C~-------d~dLC~~C~~~~ 33 (43)
T cd02340 11 VGVRYKCLVCP-------DYDLCESCEAKG 33 (43)
T ss_pred cCCeEECCCCC-------CccchHHhhCcC
Confidence 57899999884 699999885543
No 10
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=11.46 E-value=65 Score=21.44 Aligned_cols=16 Identities=38% Similarity=0.760 Sum_probs=12.4
Q ss_pred hhhhhhhhccccchhh
Q 024104 126 VFDFCAGRCRHNSESV 141 (272)
Q Consensus 126 ~Fe~C~~kCRT~s~sv 141 (272)
||-.|.+.||-+|--.
T Consensus 3 hfvicttdcrrnspgt 18 (35)
T PF08120_consen 3 HFVICTTDCRRNSPGT 18 (35)
T ss_pred eEEEeccccccCCCCc
Confidence 7888999999877543
Done!