Query 024104
Match_columns 272
No_of_seqs 135 out of 147
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mmc_A AC-AMP2, antimicrobial 10.4 1E+02 0.0034 19.3 1.1 16 79-95 7-22 (30)
2 1wkx_A Hevein isoform 2; aller 9.9 98 0.0033 20.8 1.0 15 80-95 11-25 (43)
3 2kus_A SM-AMP-1.1A; plant anti 9.8 1E+02 0.0035 19.8 1.0 15 80-95 13-27 (35)
4 1jb0_M Photosystem 1 reaction 9.6 2.3E+02 0.008 17.8 2.6 15 15-29 11-25 (31)
5 2e29_A ATP-dependent RNA helic 9.5 58 0.002 24.9 -0.3 28 25-56 39-66 (92)
6 2pcn_A S-adenosylmethionine:2- 8.4 1.7E+02 0.0059 24.1 2.2 24 44-67 138-161 (161)
7 2ari_A Envelope polyprotein GP 8.1 91 0.0031 20.7 0.3 15 39-53 25-39 (39)
8 1co4_A AMT1, protein (activato 7.9 2.3E+02 0.0078 19.0 2.2 26 72-105 5-30 (42)
9 2lb7_A WAMP-1A, antimicrobial 6.3 1.6E+02 0.0054 19.9 0.7 15 80-95 12-26 (44)
10 2dip_A Zinc finger SWIM domain 5.2 3.5E+02 0.012 20.6 2.3 20 71-97 42-61 (98)
No 1
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A*
Probab=10.41 E-value=1e+02 Score=19.32 Aligned_cols=16 Identities=31% Similarity=1.047 Sum_probs=12.0
Q ss_pred cCCCCCCCCcccCcccc
Q 024104 79 QGCNLLSQCCNSYEYCV 95 (272)
Q Consensus 79 ~~C~~~~~CC~~YE~CV 95 (272)
..|. .+.||+.|-||=
T Consensus 7 ~~Cp-~~~CCS~~G~CG 22 (30)
T 1mmc_A 7 GRCP-SGMCCSQFGYCG 22 (30)
T ss_dssp SCCS-TTCEECTTSCEE
T ss_pred CcCC-CCCCCCCCCccc
Confidence 4564 478999998884
No 2
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A*
Probab=9.95 E-value=98 Score=20.81 Aligned_cols=15 Identities=27% Similarity=0.915 Sum_probs=11.2
Q ss_pred CCCCCCCCcccCcccc
Q 024104 80 GCNLLSQCCNSYEYCV 95 (272)
Q Consensus 80 ~C~~~~~CC~~YE~CV 95 (272)
.|. .+.||+.|-||=
T Consensus 11 ~Cp-~~~CCS~~G~CG 25 (43)
T 1wkx_A 11 LCP-DNLCCSQWGWCG 25 (43)
T ss_dssp CCS-TTCEECTTSCEE
T ss_pred cCC-CCCccCccCccC
Confidence 464 478999998774
No 3
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media}
Probab=9.78 E-value=1e+02 Score=19.85 Aligned_cols=15 Identities=47% Similarity=1.329 Sum_probs=11.7
Q ss_pred CCCCCCCCcccCcccc
Q 024104 80 GCNLLSQCCNSYEYCV 95 (272)
Q Consensus 80 ~C~~~~~CC~~YE~CV 95 (272)
+|. .+.||+.|-||=
T Consensus 13 ~C~-~g~CCS~~G~CG 27 (35)
T 2kus_A 13 GCR-GGLCCSQYGYCG 27 (35)
T ss_dssp CCC-TTCEECTTSBEE
T ss_pred ccC-CCCccCCCcccc
Confidence 364 589999998884
No 4
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=9.59 E-value=2.3e+02 Score=17.79 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhc
Q 024104 15 LLTLQFLSIISAIRK 29 (272)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (272)
.+++++.++|-|+|=
T Consensus 11 AL~~Al~~~iLA~rL 25 (31)
T 1jb0_M 11 ALVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556778888873
No 5
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=9.47 E-value=58 Score=24.88 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=23.0
Q ss_pred HHhhcccCCCCCccccccccCCeEEecCCCcc
Q 024104 25 SAIRKDIGFQETPFCKTTVQGRYLLSDDNGYV 56 (272)
Q Consensus 25 ~~~~~d~~~~~~~~CrntvQg~~li~Dd~G~v 56 (272)
..||+.++ ....+.|+|-.|++|.+|.|
T Consensus 39 ~~L~~~l~----e~~~~~v~~m~l~~d~~Gav 66 (92)
T 2e29_A 39 KELNRKLS----SNAVSQITRMCLLKGNMGVC 66 (92)
T ss_dssp HHHHHHSC----HHHHTTCEEEEECTTSSEEE
T ss_pred HHHHHhcC----HHHHhhhCeEEEecCCCEEE
Confidence 56777776 55788899999999999977
No 6
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=8.40 E-value=1.7e+02 Score=24.08 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=20.8
Q ss_pred cCCeEEecCCCccccCcccCCCCC
Q 024104 44 QGRYLLSDDNGYVCDAVSMDPQSR 67 (272)
Q Consensus 44 Qg~~li~Dd~G~vC~r~~l~~~~G 67 (272)
.|-++++|+.|-|-...++...||
T Consensus 138 PGD~i~aD~dGVvviP~~l~~~~~ 161 (161)
T 2pcn_A 138 PGAYVYADADGVVVANKDLLAKNG 161 (161)
T ss_dssp TTCEEEEETTEEEEESSCTTSCCC
T ss_pred CCCEEEECCCeEEEEChHHhhhcC
Confidence 588999999999999998886665
No 7
>2ari_A Envelope polyprotein GP160; HIV, fusion, peptide, domain, membrane, micelle, viral protein; NMR {Human immunodeficiency virus 1} PDB: 2jnr_B
Probab=8.11 E-value=91 Score=20.66 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=5.5
Q ss_pred ccccccCCeEEecCC
Q 024104 39 CKTTVQGRYLLSDDN 53 (272)
Q Consensus 39 CrntvQg~~li~Dd~ 53 (272)
=.-|||-|.|+.||+
T Consensus 25 ~tLTvQar~Ll~~~~ 39 (39)
T 2ari_A 25 MTLTVQADYKDDDDK 39 (39)
T ss_dssp CSSSCCC--------
T ss_pred heeeeehhhccccCC
Confidence 367899999999984
No 8
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=7.93 E-value=2.3e+02 Score=19.04 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=20.8
Q ss_pred CCceEeccCCCCCCCCcccCccccccccCCCcch
Q 024104 72 KGEKFSCQGCNLLSQCCNSYEYCVSCCVNPARTL 105 (272)
Q Consensus 72 ~~~~~sC~~C~~~~~CC~~YE~CVSCCl~P~k~~ 105 (272)
.+++|+|..| +--|=+|=|.|++.++
T Consensus 5 ~g~K~AC~~C--------irGHRss~C~H~drpL 30 (42)
T 1co4_A 5 NGVKYACDSC--------IKSHKAAQCEHNDRPL 30 (42)
T ss_dssp TTEEEEETTT--------TTTSGGGGCCCCSSCE
T ss_pred cCcEeehhhh--------cCccccCeeEcCCCcc
Confidence 4689999999 4467799999999743
No 9
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae}
Probab=6.33 E-value=1.6e+02 Score=19.90 Aligned_cols=15 Identities=33% Similarity=1.083 Sum_probs=11.2
Q ss_pred CCCCCCCCcccCcccc
Q 024104 80 GCNLLSQCCNSYEYCV 95 (272)
Q Consensus 80 ~C~~~~~CC~~YE~CV 95 (272)
+|. ...||+.|-||=
T Consensus 12 ~C~-~g~CCS~~G~CG 26 (44)
T 2lb7_A 12 KCP-NCLCCGKYGFCG 26 (44)
T ss_dssp CCC-TTCEEETTTEEE
T ss_pred cCC-CCCccCCCCccC
Confidence 464 478999998774
No 10
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=5.20 E-value=3.5e+02 Score=20.62 Aligned_cols=20 Identities=30% Similarity=0.969 Sum_probs=15.8
Q ss_pred CCCceEeccCCCCCCCCcccCcccccc
Q 024104 71 EKGEKFSCQGCNLLSQCCNSYEYCVSC 97 (272)
Q Consensus 71 ~~~~~~sC~~C~~~~~CC~~YE~CVSC 97 (272)
..+.||.|..|. .|..|..|
T Consensus 42 I~G~RykC~~C~-------d~DLC~~C 61 (98)
T 2dip_A 42 IEGKCYKCTECI-------EYHLCQEC 61 (98)
T ss_dssp CCSCEEEESSSS-------SCEEEHHH
T ss_pred cccCeEECCCCC-------CccHHHHH
Confidence 457899999884 48888887
Done!