Query 024105
Match_columns 272
No_of_seqs 193 out of 1102
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_C Guanine nucleotide-bind 100.0 7E-105 3E-109 723.6 19.8 247 1-257 4-251 (254)
2 3iz6_E 40S ribosomal protein S 100.0 6E-108 2E-112 750.1 -42.8 263 1-266 1-268 (274)
3 2xzm_E Ribosomal protein S5 co 100.0 5.8E-98 2E-102 689.5 18.4 220 37-257 23-251 (296)
4 3j20_F 30S ribosomal protein S 100.0 2.9E-87 9.8E-92 603.3 15.0 203 35-238 10-218 (236)
5 3bbn_E Ribosomal protein S5; s 100.0 1.1E-64 3.7E-69 470.0 11.6 186 38-240 113-298 (308)
6 3r8n_E 30S ribosomal protein S 100.0 6.5E-58 2.2E-62 389.2 12.4 146 82-239 1-146 (150)
7 3i1m_E 30S ribosomal protein S 100.0 5.8E-57 2E-61 389.2 11.1 147 82-240 10-156 (167)
8 2vqe_E 30S ribosomal protein S 100.0 1.1E-55 3.7E-60 379.7 15.3 156 81-250 4-159 (162)
9 1pkp_A Ribosomal protein S5; 2 100.0 1E-55 3.4E-60 375.8 12.3 140 81-229 9-148 (150)
10 2l2n_A Hyponastic leave 1; DSR 38.1 35 0.0012 26.2 4.1 79 41-143 3-85 (103)
11 4ard_A Capsid protein P27; vir 36.4 18 0.00061 29.1 2.3 30 206-240 14-43 (116)
12 4hpn_A Putative uncharacterize 34.6 7.8 0.00027 35.6 -0.2 48 54-124 1-49 (378)
13 4h83_A Mandelate racemase/muco 32.9 8.9 0.0003 35.7 -0.1 50 51-123 17-67 (388)
14 3iz6_E 40S ribosomal protein S 31.9 4.7 0.00016 37.0 -2.1 49 100-150 137-185 (274)
15 3i6e_A Muconate cycloisomerase 29.7 11 0.00039 34.9 0.0 48 54-124 8-57 (385)
16 2kgf_A Capsid protein P27; ret 29.6 32 0.0011 28.5 2.7 62 185-254 14-82 (140)
17 2chr_A Chloromuconate cycloiso 27.5 15 0.00052 33.4 0.5 18 54-72 1-18 (370)
18 2v4x_A JSRV capsid, capsid pro 27.1 35 0.0012 28.2 2.6 32 204-240 25-56 (140)
19 3my9_A Muconate cycloisomerase 26.3 10 0.00034 35.1 -1.0 52 50-124 2-55 (377)
20 4h2h_A Mandelate racemase/muco 26.2 13 0.00046 34.2 -0.1 51 52-124 8-59 (376)
21 2f3j_A RNA and export factor b 25.4 49 0.0017 27.1 3.2 19 61-79 90-110 (177)
22 3adl_A RISC-loading complex su 25.4 78 0.0027 23.5 4.1 37 102-143 46-82 (88)
23 3p3c_A UDP-3-O-[3-hydroxymyris 25.0 38 0.0013 30.9 2.6 16 171-186 22-37 (274)
24 3uhm_A UDP-3-O-[3-hydroxymyris 22.3 43 0.0015 30.9 2.4 16 171-186 23-38 (299)
25 3p3g_A UDP-3-O-[3-hydroxymyris 22.3 43 0.0015 31.0 2.4 16 171-186 23-38 (300)
26 2h8e_A Crossover junction endo 21.0 44 0.0015 25.9 2.0 18 212-229 69-86 (120)
No 1
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Probab=100.00 E-value=7.3e-105 Score=723.63 Aligned_cols=247 Identities=61% Similarity=1.019 Sum_probs=215.0
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeeccCCchhhhcCCcCCHHHHHhcCCCCCchhhhhhhcC
Q 024105 1 MAERGGERGAFGRGFGRGGRGDRGGPRGRRRAGRREEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 80 (272)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~tklG~lVk~~kiksleei~~~slpIkE~eIiD~~lg 80 (272)
|+|++.++++||+++ ||+ || +++++++|++||+|+|||||||||||||||||||+|||||||+|||||||
T Consensus 4 ~~~~~~~~~~~~~~~----~~~----~~-~~~~~~~~~~~W~P~TklG~lVk~~kiksleei~~~slpikE~eiiD~~l- 73 (254)
T 3u5c_C 4 PEAQQQKRGGFGGRN----RGR----PN-RRGPRNTEEKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLL- 73 (254)
T ss_dssp ---------------------------------------CCCCCSHHHHHHHTTCCCCHHHHHHTTCCCCCHHHHHHHC-
T ss_pred hhccchhccccCCCC----CCC----Cc-CCCcccccccceeecccccchhhcCccccHHHHHHcCCCccchHHHHHHH-
Confidence 677766688887432 221 11 34555789999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCce
Q 024105 81 HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHT 160 (272)
Q Consensus 81 ~~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~hT 160 (272)
++|+|+||+|++|||||++||++||+|||||||+|||||||++||+||++||++|+++||+||+||+||||||+||++||
T Consensus 74 ~~Lke~Vl~I~rVqK~tkgGrr~rF~AlVVVGD~nG~VGlG~gkakEV~~AIrkAi~~Ak~nlipV~rgyWg~~~g~~hT 153 (254)
T 3u5c_C 74 PGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHS 153 (254)
T ss_dssp CCCBCCEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHTCEECCEECSSSCCSSCCE
T ss_pred HhhhhhEEEEeeeEEEecCCcEEEEEEEEEecCCCCceeecccccchHHHHHHHHHHHHHhCeEEeccccccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhhh
Q 024105 161 VPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 240 (272)
Q Consensus 161 Ip~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~ 240 (272)
|||+|+|+|||++|+|+|||+||||+|++++++||+||||+|||+|++|||+|++||+||||+||+++|||+|||+|+|+
T Consensus 154 Ip~~V~Gk~Gs~~V~L~PAp~GtGIiag~~~r~vLelAGI~Dv~tks~Gst~t~~N~vKATf~AL~ktys~ltPdlw~e~ 233 (254)
T 3u5c_C 154 LATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQ 233 (254)
T ss_dssp ESSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHTTCCCEEEEEESCTTCHHHHHHHHHHHHHGGGGCCCGGGCSCC
T ss_pred eeeEEEeeecceEEEEecCCCCcCeecCcHHHHHHHhcCcceEEEEccccCCChHHHHHHHHHHHHhhhcccCHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhh-cccCC
Q 024105 241 RFVKSPYQEYTD-LLTPK 257 (272)
Q Consensus 241 ~~~~~p~~~~~d-~l~~~ 257 (272)
+|+++||||||| ||++.
T Consensus 234 ~~~~~p~~e~~d~~l~~~ 251 (254)
T 3u5c_C 234 PLPVSPLDIYSDEASAQK 251 (254)
T ss_dssp CCCCCHHHHTTTTSSCC-
T ss_pred ccCCCcchhhhhHHhhhc
Confidence 999999999999 99863
No 2
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e
Probab=100.00 E-value=5.8e-108 Score=750.08 Aligned_cols=263 Identities=83% Similarity=1.342 Sum_probs=239.0
Q ss_pred CCccCC----CCCCCCCCCCCCCCCCC-CCCCCCCCCCCccccCceeeccCCchhhhcCCcCCHHHHHhcCCCCCchhhh
Q 024105 1 MAERGG----ERGAFGRGFGRGGRGDR-GGPRGRRRAGRREEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQII 75 (272)
Q Consensus 1 ~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~p~tklG~lVk~~kiksleei~~~slpIkE~eIi 75 (272)
|+|+++ +++|||++++++|||++ +++|| ++++ ++|++||+|+|||||||||||||||||||+|||||||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~eW~P~TkLG~lVk~~kiksleei~~~slpIkE~eIi 78 (274)
T 3iz6_E 1 MAERGGERGGERGGFGRGFGRGGRGDRGGRRGG-RRGP-RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIV 78 (274)
T ss_dssp CCCSCCCCSTTTTCTTHHHHHHHHHHSSSSSSC-SSCS-HHHHHHHHHHHHHTCCCSSCTTHHHHHHHTTHHHHHHHTCC
T ss_pred CCcccCCCCCCCCCcCCCCCCCCCCCCCCCCCC-CCCC-cccccceeecccccceeccCccccHHHHHHcCCCccchHHH
Confidence 777643 47778765333333322 12222 3444 67999999999999999999999999999999999999999
Q ss_pred hhhcCCCcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcC
Q 024105 76 DTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKI 155 (272)
Q Consensus 76 D~~lg~~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~ 155 (272)
|||| ++|+|+||+|++|||||++||++||+|||||||+|||||||++||+||++||++|+++||+||+||+||||||+|
T Consensus 79 D~~l-~~Lke~Vl~I~rVqK~tkgGrr~rF~AlVVVGD~nG~VGlG~gKakEV~~AIrkAi~~AK~nlipV~rgyWg~~~ 157 (274)
T 3iz6_E 79 ETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKI 157 (274)
T ss_dssp SSSS-HHHHHHHHCCSHHHHHHTTTCSSSCSSCCSHHHHCCCCEEEEEEECCEEECSSCEEECEEEEEEECSSSBCCCCE
T ss_pred HHHH-HhhhhcEEEEeeeEeEecCCcEEEEEEEEEecCCCCceeccccccchHHHHHHHHHHHHHhCcEEeccccccccC
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChH
Q 024105 156 GRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPD 235 (272)
Q Consensus 156 g~~hTIp~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~ 235 (272)
+++|||||+|+|||||++|+|+|||+||||+|++++++||+||||+|||+|++|||+|++||+||||+||+++|+|+|||
T Consensus 158 g~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiag~~~r~vLelAGI~Dv~tks~Gst~~~~N~vKATf~AL~ktys~ltPd 237 (274)
T 3iz6_E 158 GQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPD 237 (274)
T ss_dssp EESSHHHHHHHHHHHHHSSCBCCCBCSSSCBSSCEECCCSSCEEEEESSSCCCSHHHHHHHHHTCSSCEEEEESCCCHHH
T ss_pred CCCcccceEEEEEEcCEEEEEeeCCCCcCeecCcHHHHHHhhcCcceEEEEccccCCChhhhHHHHHHHHHhhhcccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChhhhhhcccCCccccccccc
Q 024105 236 FWRETRFVKSPYQEYTDLLTPKPINKAVITE 266 (272)
Q Consensus 236 ~w~~~~~~~~p~~~~~d~l~~~~~~~~~~~~ 266 (272)
+|+|++|+++|||||||||+|++++.+|-.-
T Consensus 238 lw~e~~~~~~p~~e~~d~l~~~~~~~~~~~~ 268 (274)
T 3iz6_E 238 FWRDTKFVKSPFQEYTDLLAKPTKALMIDAP 268 (274)
T ss_dssp HHHHHHHHSSCCCCHHHHHHCCCCCC-----
T ss_pred HhhhcccCCCchhhHHHHHhhcccceEeeCc
Confidence 9999999999999999999999988776443
No 3
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E
Probab=100.00 E-value=5.8e-98 Score=689.53 Aligned_cols=220 Identities=60% Similarity=1.025 Sum_probs=217.0
Q ss_pred ccCceeeccCCchhhhcCCcCCHHHHHhcCCCCCchhhhhhhcCCC---------cceeEEEEeeEEEeccCCeeeEEEE
Q 024105 37 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHK---------LKDEVMKIMPVQKQTRAGQRTRFKA 107 (272)
Q Consensus 37 ~~~~w~p~tklG~lVk~~kiksleei~~~slpIkE~eIiD~~lg~~---------lk~eVl~i~~Vqk~Tk~Grr~rFkA 107 (272)
|++||+|+|+||||||||||+||||||+|||||+|+||||||| ++ |+|+||+|++|||||++||++||+|
T Consensus 23 ~~~~W~P~TklGrlVk~gkI~sleei~~~slpIkE~eIiD~ll-~~~~~~~~~~~L~ekVv~I~rVqKvTkgGRr~rF~A 101 (296)
T 2xzm_E 23 DKNDWQPQTKLGRLVKYGKISSLDEIFKYSIPIKEPEIIDHFY-PKNKDVQAEHKLMEEVLQITPVQKQTQAGQRTRFKG 101 (296)
T ss_dssp -CCCCCCCSSHHHHHHTTCSCCHHHHHHTTCCCCCSHHHHHHS-CTTCCSCCTTCCEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCccccccccccccccCCccCCHHHHHhcCCCcCchhhhHHHh-ccCcccchhhhheeEEEEEEeEEEEecCCcEEEEEE
Confidence 7999999999999999999999999999999999999999999 55 9999999999999999999999999
Q ss_pred EEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCceeeeeEEeEEeeEEEEeeeCCCCcceee
Q 024105 108 FVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVA 187 (272)
Q Consensus 108 lVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~hTIp~~v~Gk~gsv~V~L~PAPrGtGiva 187 (272)
||||||+|||||||++||+||++||++|+++|++||+||+||||||++|++|||||+|+|||||++|+|+|||+||||+|
T Consensus 102 lVVVGD~nG~VGlG~GKAkEV~~AIrKAi~~Ak~nli~V~rg~wen~~g~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiA 181 (296)
T 2xzm_E 102 FVVVGDSNGHIGLGWKVAKEVQGAIKGAITHAKLNMVPVRKGYWGNKIANAHTIPQKITGKSGSVRIRLVPAPRGTGIVA 181 (296)
T ss_dssp EEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEECCCBCSSSCCSSCCBCSSCEEEEETTEEEEEECCCSSCCCBS
T ss_pred EEEEeCCCccCccceeechHHHHHHHHHHHHHHhCcEEEecccccccCCCCCeeeEEEEEEECcEEEEEEECCCCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhhhcCCCCChhhhhhcccCC
Q 024105 188 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPK 257 (272)
Q Consensus 188 ~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~~~~~~p~~~~~d~l~~~ 257 (272)
++++++||+||||+|||+|++|||+|++||+||||+||+++|+|+||++|++++|+++|||||||||+++
T Consensus 182 g~~~r~VLelAGI~Dv~tKs~G~S~n~~N~vKATf~AL~k~~s~~TPdlw~e~~~~~~p~~e~~d~l~~~ 251 (296)
T 2xzm_E 182 APIPKKVLQFAGVQDIYTSSQGCTRTRGNFLKATYYALANTYRYLTPDFWGKPEDNELPFETFSEFLHTK 251 (296)
T ss_dssp CHHHHHHHHTTTCCCCEEEEESCCSCHHHHHHHHHHHHHHHHHSCCTTTCSBCCCCCCHHHHHTTGGGST
T ss_pred CcHHHHHHHhcCcCeEEEEcccCCCCccchhHHHHHHHHHHhcccCHHHHhhcccCCChHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 4
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.9e-87 Score=603.31 Aligned_cols=203 Identities=42% Similarity=0.719 Sum_probs=198.6
Q ss_pred ccccCceeeccCCchhhhcCCcCCHHHHHhcCCCCCchhhhhhhcCCCcc----eeEEEEeeEEEeccCCeeeEEEEEEE
Q 024105 35 REEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLK----DEVMKIMPVQKQTRAGQRTRFKAFVV 110 (272)
Q Consensus 35 ~~~~~~w~p~tklG~lVk~~kiksleei~~~slpIkE~eIiD~~lg~~lk----~eVl~i~~Vqk~Tk~Grr~rFkAlVv 110 (272)
|.|++||+|+|||||||||||||||||||+|||||||+||||||| ++|+ |+||+|++|||||++||++||+||||
T Consensus 10 ~~~~~~w~p~tklG~lVk~~ki~sleei~~~~lpike~eiid~~l-~~Lk~~~~e~Vl~I~rV~K~tkgGrr~rF~AlVv 88 (236)
T 3j20_F 10 KRVLDEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLL-PEVNARENQEVLDIALTVRMTDSGRRVRFRVLAA 88 (236)
T ss_dssp HHHTTSCCCSSHHHHHHHTTCSCCHHHHHHHTCCCCCSHHHHHHC-CSSSSCCEEEEEEECCCEEEETTEEEECEEEEEE
T ss_pred HhhccceeccccccceeecCccccHHHHHhcCCCcccHHHHHHHH-HhhcccCCcEEEEEeeeEEeecCCcEEEEEEEEE
Confidence 468999999999999999999999999999999999999999999 9999 99999999999999999999999999
Q ss_pred eCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecC--cccCcCCCCceeeeeEEeEEeeEEEEeeeCCCCcceeec
Q 024105 111 VGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG--YWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAA 188 (272)
Q Consensus 111 VGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rg--yw~~~~g~~hTIp~~v~Gk~gsv~V~L~PAPrGtGiva~ 188 (272)
|||+|||||+|++||+||++||++|+++||+||+||+|+ ||||+||++|||||+|+|+|||++|+|+|||+||||+|+
T Consensus 89 VGD~nG~VGlG~gKakEV~~AIrkAi~~Ak~nli~V~r~~g~W~~~~g~~hTIp~~V~Gk~Gs~~V~L~PAp~GtGIiag 168 (236)
T 3j20_F 89 VGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIG 168 (236)
T ss_dssp EEETTTEEEEEEEEESSHHHHHHHHHHHHHHSEEECCCBSSCSSSCCSSCCBCSSCEEEEETTEEEEEECCCSSCCCBSC
T ss_pred EECCCCcCccccccchhHHHHHHHHHHHHHhCeEEEecccccccccCCCCCceeeEEEEEECCEEEEEEcCCCcCCcccC
Confidence 999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHh
Q 024105 189 RVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWR 238 (272)
Q Consensus 189 ~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~ 238 (272)
+++++||+||||+|||+|++|||+|++||+||||+||+++|+|+|+++-+
T Consensus 169 ~~~r~vLelAGI~Dv~tks~Gst~n~~N~vKATf~AL~k~~s~~t~~~~~ 218 (236)
T 3j20_F 169 DVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNTNRVAISPEMI 218 (236)
T ss_dssp HHHHHHHHHHTCCCCEEEEESCCSCHHHHHHHHHHHHHHHHHSCCTTTC-
T ss_pred cHHHHHHHhCCcceEEEEcccCCCCHHHHHHHHHHHHHhcccccChHHHH
Confidence 99999999999999999999999999999999999999999999986533
No 5
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.1e-64 Score=469.98 Aligned_cols=186 Identities=26% Similarity=0.362 Sum_probs=142.4
Q ss_pred cCceeeccCCchhhhcCCcCCHHHHHhcCCCCCchhhhhhhcCCCcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCc
Q 024105 38 EEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGH 117 (272)
Q Consensus 38 ~~~w~p~tklG~lVk~~kiksleei~~~slpIkE~eIiD~~lg~~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~ 117 (272)
+.+|.|+|+|||||++||||++ |+|+|||||+|+||+|+| .|+||+|++|||||++||++||+|||||||+|||
T Consensus 113 ergwsg~TklGrlVk~~kik~~-~~~~fsl~ike~ei~d~f-----~ekVv~I~RV~KvTkgGRr~rF~AlVVVGDgnG~ 186 (308)
T 3bbn_E 113 GAAYSGESLLGNDVYAMDSKIK-KATGFGSKSKKEKIRDGF-----EENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQ 186 (308)
T ss_dssp ---------------------------------------CC-----EEEEEEEECCEEEETTEEEECCEEEEEEECSSSE
T ss_pred ccCcccccccCccCCCccccch-hhhccccccccccccccc-----eeeEEEEeeeEEEecCCcEEEEEEEEEEeCCCce
Confidence 4569999999999999999975 899999999999999854 5999999999999999999999999999999999
Q ss_pred eecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCceeeeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhh
Q 024105 118 VGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQF 197 (272)
Q Consensus 118 VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~hTIp~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~l 197 (272)
||+|+|||+||++||+||+++||+||++|+++ ++|||||+|+|||||++|+|+|||+|+||+|++++++||+|
T Consensus 187 VGlG~GKAkEV~~AIrKAi~~Akknli~V~r~-------~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiAg~~vr~VLel 259 (308)
T 3bbn_E 187 VGVGVGKAKEVVSAVQKAAVDARRNIITVPMT-------KYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEM 259 (308)
T ss_dssp EEEEEEECSSHHHHHHHHHHTTTTSCEECCCC-------SSSBCSSCEEEEETTEEEEEEECCTTCCEECCTTTHHHHTT
T ss_pred EeeeeeecchHHHHHHHHHHHHHhCeEEEecC-------CCcccceEEEEEEeeEEEEEEECCCCCceecCcHHHHHHHh
Confidence 99999999999999999999999999999995 89999999999999999999999999999999999999999
Q ss_pred cCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhhh
Q 024105 198 AGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 240 (272)
Q Consensus 198 AGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~ 240 (272)
|||+|||+|++||+ |+.|++||||+||+++| ||++.++.
T Consensus 260 AGIkDv~tKs~GSt-n~lN~vKATf~AL~k~~---s~~eVA~~ 298 (308)
T 3bbn_E 260 AGVENALGKQLGSN-NALNNARATIVAVQTMR---QFSDVARD 298 (308)
T ss_dssp TTCCBEEEEEEECC-CTTTTTTHHHHHHHTCC---CHHHHHTT
T ss_pred cCcceEEEeccCCC-CchhHHHHHHHHHHhcC---CHHHHHHH
Confidence 99999999999998 56799999999999999 88887764
No 6
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 3j18_E* 2wwl_E 3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E 4gd1_E 4gd2_E 2qal_E* 1p6g_E 1p87_E ...
Probab=100.00 E-value=6.5e-58 Score=389.23 Aligned_cols=146 Identities=32% Similarity=0.481 Sum_probs=141.9
Q ss_pred CcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCcee
Q 024105 82 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTV 161 (272)
Q Consensus 82 ~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~hTI 161 (272)
+|+|+||+|++|||||++||++||+|||+|||+|||||||++||+||++||++|+++||+||+||+| ++|||
T Consensus 1 ~l~e~vv~i~rV~K~tk~Gr~~~F~alVvvGd~nG~vG~G~gka~ev~~Ai~kA~~~Ak~nli~V~~--------~~~Ti 72 (150)
T 3r8n_E 1 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVAL--------NNGTL 72 (150)
T ss_dssp CCCEEEEEEEECCCCCSSSCCCCEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSCCCCCC--------SSSSC
T ss_pred CceEEEEEEeeeEEEecCCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHHHHHhCeEEEec--------CCCee
Confidence 5899999999999999999999999999999999999999999999999999999999999999999 68999
Q ss_pred eeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhh
Q 024105 162 PCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRE 239 (272)
Q Consensus 162 p~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~ 239 (272)
||+|+|+|||++|+|+|||+||||+|++++++||+||||+|||+|++||| |++||+||||+||+++| ||++.++
T Consensus 73 p~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~D~~tk~~Gst-n~~N~vkAt~~aL~~~~---s~~~iA~ 146 (150)
T 3r8n_E 73 QHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGST-NPINVVRATIDGLENMN---SPEMVAA 146 (150)
T ss_dssp SSCEEEEETTEEEEEECCCCSSCCBSCTTTHHHHHHTCCSSCEEEEEECC-CHHHHHHHHHHHHHHSC---CSSHHHH
T ss_pred eeEEeeEEccEEEEEEcCCCcCceecCcHHHHHHHhCCcceEEEEeccCC-ChhhHHHHHHHHHHccC---CHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 57999999999999999 8887765
No 7
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E*
Probab=100.00 E-value=5.8e-57 Score=389.21 Aligned_cols=147 Identities=32% Similarity=0.478 Sum_probs=142.6
Q ss_pred CcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCcee
Q 024105 82 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTV 161 (272)
Q Consensus 82 ~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~hTI 161 (272)
+|+|+||+|++|||||++||++||+|||+|||+|||||||++||+||++||++|+++||+||+||+| ++|||
T Consensus 10 ~l~e~vv~I~rV~K~tk~Gr~~~F~AlVvvGd~nG~VG~G~gka~Ev~~AI~kAi~~Ak~nli~V~~--------~~~Ti 81 (167)
T 3i1m_E 10 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVAL--------NNGTL 81 (167)
T ss_dssp CCCEEEEEEEEEECCBTTBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSEECCCC--------BTTBC
T ss_pred ceeEEEEEEEeeEEEEcCCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHHHHHhCeEEEec--------CCCee
Confidence 5999999999999999999999999999999999999999999999999999999999999999999 58999
Q ss_pred eeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhhh
Q 024105 162 PCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 240 (272)
Q Consensus 162 p~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~ 240 (272)
||+|+|+|||++|+|+|||+||||+|++++++||+||||+|||+|++||| |++||+||||+||+++| ||++.++.
T Consensus 82 p~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~Dv~tk~~Gst-n~~N~vkAtf~aL~~~~---s~~~vA~~ 156 (167)
T 3i1m_E 82 QHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGST-NPINVVRATIDGLENMN---SPEMVAAK 156 (167)
T ss_dssp SSCEEEEETTEEEEEECCCCSSSCBCCSSSSSHHHHHTCCSCEEEEEECC-CHHHHHHHTHHHHHSCC---CSTTTTTT
T ss_pred eeEeeeeeccEEEEEEcCCCccceecCcHHHHHHHhCCcceEEEEeccCC-ChhHHHHHHHHHHHhcC---CHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 59999999999999999 88877763
No 8
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=100.00 E-value=1.1e-55 Score=379.68 Aligned_cols=156 Identities=29% Similarity=0.444 Sum_probs=144.3
Q ss_pred CCcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCce
Q 024105 81 HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHT 160 (272)
Q Consensus 81 ~~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~hT 160 (272)
.+|+|+||+|++|||||++||++||+|||+|||+|||||||++||+||++||++|+++|++||+||+|+ +||
T Consensus 4 ~~l~e~vv~I~rV~K~tkgGr~~~F~alVvvGd~nG~vG~G~gKa~ev~~AIrkA~~~Ak~nli~V~~~--------~~T 75 (162)
T 2vqe_E 4 TDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQ--------NGT 75 (162)
T ss_dssp -CCEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSEEECCCS--------TTS
T ss_pred cCceeEEEEEEeEEEEeCCCcEEEEEEEEEEeCCCCeEecceEecccHHHHHHHHHHHHHhCcEEEecC--------CCc
Confidence 368999999999999999999999999999999999999999999999999999999999999999994 589
Q ss_pred eeeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhhh
Q 024105 161 VPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 240 (272)
Q Consensus 161 Ip~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~ 240 (272)
|||+|+|||||++|+|+|||+||||+|++++++||++|||+|||+|++||+ |++||+||||+||++++ ||++.++.
T Consensus 76 Ip~~v~gk~gs~~V~l~Pap~GtGiiag~~~r~vl~~aGI~Dv~tk~~Gs~-n~~N~vkAt~~aL~~~~---s~~~vA~~ 151 (162)
T 2vqe_E 76 IPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSR-NPINIAYATMEALRQLR---TKADVERL 151 (162)
T ss_dssp CSSCEEEEETTEEEEEEECCTTSCEESCHHHHHHHHTTTCCSEEEEEEECC-CHHHHHHHHHHHHHHCC---CHHHHHHH
T ss_pred ccEEEEEEeCcEEEEEEECCCCcceecCcHHHHHHHhcCccceEEEecCCC-CcchHHHHHHHHHHhcC---CHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 89999999999999999 99998874
Q ss_pred cCCCCChhhh
Q 024105 241 RFVKSPYQEY 250 (272)
Q Consensus 241 ~~~~~p~~~~ 250 (272)
...++.|+
T Consensus 152 --RG~~~~~~ 159 (162)
T 2vqe_E 152 --RKGEAHAQ 159 (162)
T ss_dssp --TCC-----
T ss_pred --cCCCHHHh
Confidence 34444443
No 9
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=100.00 E-value=1e-55 Score=375.79 Aligned_cols=140 Identities=40% Similarity=0.597 Sum_probs=137.0
Q ss_pred CCcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCce
Q 024105 81 HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHT 160 (272)
Q Consensus 81 ~~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~hT 160 (272)
++|+|+||+|+||||||++||++||+|||+|||+|||||||++||+||++||++|+++|++||+||+|+ + ||
T Consensus 9 ~~l~e~vv~i~rV~K~tk~Gr~~~F~alVvVGd~nG~vG~G~gka~ev~~Ai~kA~~~Ak~nl~~V~~~-------~-~T 80 (150)
T 1pkp_A 9 LELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIV-------G-TT 80 (150)
T ss_dssp SCCEEEEEEEECSSSBCSSCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEECCCB-------T-TB
T ss_pred CCceEEEEEEEeEEEEeCCCcEEEEEEEEEEeCCCCeEeeeEEecchHHHHHHHHHHHHHHCCeEEccC-------C-ce
Confidence 479999999999999999999999999999999999999999999999999999999999999999995 4 99
Q ss_pred eeeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhc
Q 024105 161 VPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTY 229 (272)
Q Consensus 161 Ip~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~ 229 (272)
|||+|+|||||++|+|+|||+||||+|++++++||+||||+|||+|++||+ |++||+||||+||++++
T Consensus 81 ip~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~Dv~tk~~Gs~-n~~N~vkAt~~aL~~~~ 148 (150)
T 1pkp_A 81 IPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSN-TPINMVRATFDGLKQLK 148 (150)
T ss_dssp CSSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHHTCCSEEEEECSCC-SHHHHHHHHHHHHHHCC
T ss_pred eeEEEEEEECCEEEEEEECCCCCccccCcHHHHHHHhcCcceEEEEecCCC-ChhHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999987 89999999999999998
No 10
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=38.07 E-value=35 Score=26.16 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=32.7
Q ss_pred eeeccCCchhhhcCC--cCCHHHHHh-cCCCCCchhhhhhhcCCCcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCc
Q 024105 41 WVPVTKLGRLVREGK--IRSLEQIYL-HSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGH 117 (272)
Q Consensus 41 w~p~tklG~lVk~~k--iksleei~~-~slpIkE~eIiD~~lg~~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~ 117 (272)
|+|.|-....+...+ .+.|-|... ..++..+++++.- |+ .....|.+-|.|++. .
T Consensus 3 ~~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~--Gp------------------~H~~~F~~~V~v~g~--~ 60 (103)
T 2l2n_A 3 MMTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKE--GP------------------SHKSLFQSTVILDGV--R 60 (103)
T ss_dssp ----------------CTTHHHHHHHHTTCCCCEEEEEEE--SC------------------SSSCEEEEEEEETTE--E
T ss_pred cchhhhhccccCCCCCHHHHHHHHHHHcCCCCCeEEEEeE--cC------------------CCCCeEEEEEEECCE--E
Confidence 666666665555543 444555443 2334344444321 22 234579998988752 3
Q ss_pred eecccc-cchhHHHHHHHHHHHHHhCc
Q 024105 118 VGLGVK-CSKEVATAIRGAIILAKLSV 143 (272)
Q Consensus 118 VGlGvg-kakev~~AI~kAi~~Ak~ni 143 (272)
+|-|.| ++|. .|=+.|-..|...|
T Consensus 61 ~~~G~G~~SKK--~Aeq~AA~~AL~~L 85 (103)
T 2l2n_A 61 YNSLPGFFNRK--AAEQSAAEVALREL 85 (103)
T ss_dssp EECCSCBSSHH--HHHHHHHHHHHHHH
T ss_pred EEEeecCCCHH--HHHHHHHHHHHHHH
Confidence 567777 5653 34444444444433
No 11
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=36.40 E-value=18 Score=29.13 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=24.1
Q ss_pred eccCCCCChhhHHHHHHHHHHhhccCCChHHHhhh
Q 024105 206 SSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 240 (272)
Q Consensus 206 k~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~ 240 (272)
+.+|.| .+++|+.++.|... +|||.+|+.-
T Consensus 14 t~YG~t---s~y~~~lL~~la~~--~LtP~DWksl 43 (116)
T 4ard_A 14 SQYGAT---APYTLAIVESVADN--WLTPTDWNTL 43 (116)
T ss_pred HHhCCC---hHHHHHHHHHHHHh--ccChHhHHHH
Confidence 456776 47999999999984 6999999754
No 12
>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A
Probab=34.60 E-value=7.8 Score=35.57 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCcCCHHHHHhcCCCCCchhhhhhhcCCCcceeEEEEeeEEEeccCCeeeEEE-EEEEeCCCCCceeccccc
Q 024105 54 GKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFK-AFVVVGDTDGHVGLGVKC 124 (272)
Q Consensus 54 ~kiksleei~~~slpIkE~eIiD~~lg~~lk~eVl~i~~Vqk~Tk~Grr~rFk-AlVvVGd~nG~VGlGvgk 124 (272)
|||++++ +|..++|++++ | .|..|..+... .+|-|=+.+|.+|+|...
T Consensus 1 MKIt~i~-~~~~~~pl~~p-----~-----------------~~a~~~~~~~~~vlV~i~td~G~~G~GE~~ 49 (378)
T 4hpn_A 1 MKITAVR-THLLEHRLDTP-----F-----------------ESASMRFDRRAHVLVEIECDDGTVGWGECL 49 (378)
T ss_dssp CCEEEEE-EEEEEEEEEEE-----E-----------------ECSSCEEEEEEEEEEEEEETTSCEEEEEEC
T ss_pred CEEEEEE-EEEEeccCCCC-----e-----------------ECCCEEEEEEEEEEEEEEECCCCEEEEEec
Confidence 6888874 77777776543 1 13334444433 345466678999999743
No 13
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=32.85 E-value=8.9 Score=35.66 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=26.5
Q ss_pred hhcCCcCCHHHHHhcCCCCCchhhhhhhcCCCcceeEEEEeeEEEeccCCeeeEEE-EEEEeCCCCCceecccc
Q 024105 51 VREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFK-AFVVVGDTDGHVGLGVK 123 (272)
Q Consensus 51 Vk~~kiksleei~~~slpIkE~eIiD~~lg~~lk~eVl~i~~Vqk~Tk~Grr~rFk-AlVvVGd~nG~VGlGvg 123 (272)
...|||+++ |+|.+++|++++ |- |..|..+... .+|-|=+.+|.+|+|..
T Consensus 17 ~~~MkIt~I-e~~~~~~Pl~~p-----~~-----------------~s~g~~~~~~~vlV~i~td~G~~G~Ge~ 67 (388)
T 4h83_A 17 AHGLTITRI-ETIPMVAPLARE-----FR-----------------GSHYHMTHRATIVTRVHTDAGIIGEAYT 67 (388)
T ss_dssp ---CBEEEE-EEEEEEEEC--------------------------------CCEEEEEEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEE-EEEEEEeeccCC-----EE-----------------CCCEEEEEEEEEEEEEEECCCCEEEEEe
Confidence 457999999 599999998864 11 1122222222 34445566899999973
No 14
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e
Probab=31.87 E-value=4.7 Score=36.96 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=30.8
Q ss_pred CeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCc
Q 024105 100 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY 150 (272)
Q Consensus 100 Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgy 150 (272)
.-..-.+-++-|- .|+-|=.++....+..-+.+-.--++--|+|-++|+
T Consensus 137 Ai~~AK~nlipV~--rgyWg~~~g~~hTIph~V~Gk~Gs~~V~L~PAP~GT 185 (274)
T 3iz6_E 137 AIILAKLSVVPVR--RGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGS 185 (274)
T ss_dssp EEECEEEEEEECS--SSBCCCCEEESSHHHHHHHHHHHHHSSCBCCCBCSS
T ss_pred HHHHHHhCcEEec--cccccccCCCCcccceEEEEEEcCEEEEEeeCCCCc
Confidence 3333444555552 234343445556777777777777888899999984
No 15
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=29.66 E-value=11 Score=34.90 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=27.8
Q ss_pred CCcCCHHHHHhcCCCCCchhhhhhhcCCCcceeEEEEeeEEEeccCCee-eEE-EEEEEeCCCCCceeccccc
Q 024105 54 GKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQR-TRF-KAFVVVGDTDGHVGLGVKC 124 (272)
Q Consensus 54 ~kiksleei~~~slpIkE~eIiD~~lg~~lk~eVl~i~~Vqk~Tk~Grr-~rF-kAlVvVGd~nG~VGlGvgk 124 (272)
|||+++ ++|.+++|++++-. +..|.. ++. ..+|-|=+.+|.+|+|...
T Consensus 8 mkI~~i-~~~~~~~Pl~~p~~----------------------~s~g~~~~~~~~~~V~v~td~G~~G~GE~~ 57 (385)
T 3i6e_A 8 QKIIAM-DLWHLALPVVSARD----------------------HGIGRVEGSCEIVVLRLVAEGGAEGFGEAS 57 (385)
T ss_dssp SBEEEE-EEEEEECCC------------------------------------CEEEEEEEEETTSCEEEEEEC
T ss_pred cEEEEE-EEEEEecccCCCee----------------------ccCcEEeceeeEEEEEEEECCCCEEEEeec
Confidence 899999 59999999886511 111222 222 3566666678999999754
No 16
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=29.58 E-value=32 Score=28.48 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=38.6
Q ss_pred eeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhhh---cCCCCCh----hhhhhcc
Q 024105 185 IVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET---RFVKSPY----QEYTDLL 254 (272)
Q Consensus 185 iva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~---~~~~~p~----~~~~d~l 254 (272)
.+-.|+.-|++.- +++ -++.+|.++ +|+.+.+++|.. ..|||.+|+.- +++.-.| .||.|++
T Consensus 14 ~~~~pl~~K~iKe--Lk~-Av~~YGp~A---PyT~~lle~la~--~~LtP~DW~~lara~Ls~gqyllWkse~~d~~ 82 (140)
T 2kgf_A 14 RHHNGFDFAVIKE--LKT-AASQYGATA---PYTLAIVESVAD--NWLTPTDWNTLVRAVLSGGDHLLWKSEFFENC 82 (140)
T ss_dssp EEECCCCHHHHHH--HHH-HHHHTCTTS---HHHHHHHHHHHT--SBCCHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHH--HHH-HHHHhCCCC---chHHHHHHHHHh--CCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 3444555554432 223 356788764 799999999997 55999999753 4443333 3455554
No 17
>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1
Probab=27.48 E-value=15 Score=33.43 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=13.9
Q ss_pred CCcCCHHHHHhcCCCCCch
Q 024105 54 GKIRSLEQIYLHSLPIKEY 72 (272)
Q Consensus 54 ~kiksleei~~~slpIkE~ 72 (272)
|||+++| +|..++|++++
T Consensus 1 MKI~~i~-~~~~~~Pl~~p 18 (370)
T 2chr_A 1 MKIDAIE-AVIVDVPTKRP 18 (370)
T ss_dssp CCCCEEE-EEEEEEEEEEE
T ss_pred CEEEEEE-EEEEEcccCCc
Confidence 7899984 88888887654
No 18
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=27.13 E-value=35 Score=28.24 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=25.6
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhhh
Q 024105 204 FTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 240 (272)
Q Consensus 204 ~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~ 240 (272)
-++.+|.++ +|+.|.+++|.... |||.+|+.-
T Consensus 25 Av~~YGp~A---PyT~a~le~La~~~--LtP~DW~~l 56 (140)
T 2v4x_A 25 ACSQYGPTA---PFTIAMIENLGTQA--LPPNDWKQT 56 (140)
T ss_dssp HHHHTCTTS---HHHHHHHHHHHTSC--CCHHHHHHH
T ss_pred HHHHhCCCC---chHHHHHHHHHhCC--CChHHHHHH
Confidence 356678764 79999999999964 999999753
No 19
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=26.34 E-value=10 Score=35.07 Aligned_cols=52 Identities=25% Similarity=0.439 Sum_probs=31.9
Q ss_pred hhhcCCcCCHHHHHhcCCCCCchhhhhhhcCCCcceeEEEEeeEEEeccCCeee-EE-EEEEEeCCCCCceeccccc
Q 024105 50 LVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRT-RF-KAFVVVGDTDGHVGLGVKC 124 (272)
Q Consensus 50 lVk~~kiksleei~~~slpIkE~eIiD~~lg~~lk~eVl~i~~Vqk~Tk~Grr~-rF-kAlVvVGd~nG~VGlGvgk 124 (272)
|-++|||+++ ++|.+++|++++-.+ ..|..+ +- ..+|-|=+.+|++|+|...
T Consensus 2 ~~~~~kI~~i-~~~~~~~Pl~~p~~~----------------------s~~~~~~~~~~~~V~v~td~G~~G~GE~~ 55 (377)
T 3my9_A 2 LSWDSVVERI-RIFLVESPIKMARLQ----------------------GVGNVKGSVKRVLLEVTSADGIVGWGEAA 55 (377)
T ss_dssp -CCCCBEEEE-EEEEEEECEEC--------------------------------CCEEEEEEEEEETTSCEEEEEEC
T ss_pred CcccCEEEEE-EEEEEeccccCCeec----------------------cceEEEeeeeEEEEEEEECCCCEEEEecc
Confidence 4468999999 599999998865111 111111 22 4566676678999999854
No 20
>4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A*
Probab=26.23 E-value=13 Score=34.17 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=30.3
Q ss_pred hcCCcCCHHHHHhcCCCCCchhhhhhhcCCCcceeEEEEeeEEEeccCCeeeEEE-EEEEeCCCCCceeccccc
Q 024105 52 REGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFK-AFVVVGDTDGHVGLGVKC 124 (272)
Q Consensus 52 k~~kiksleei~~~slpIkE~eIiD~~lg~~lk~eVl~i~~Vqk~Tk~Grr~rFk-AlVvVGd~nG~VGlGvgk 124 (272)
..|||+++| +|..++|..+.- | .+..|..+... .+|-|=+.+|.+|+|..+
T Consensus 8 ~sMKI~~I~-~~~~~lPl~~~p----~-----------------~~a~g~~~~~~~~lV~v~td~G~~G~GE~~ 59 (376)
T 4h2h_A 8 HSLKIAEIQ-LFQHDLPVVNGP----Y-----------------RIASGDVWSLTTTIVKIIAEDGTIGWGETC 59 (376)
T ss_dssp -CCBEEEEE-EEEEEEEBTTCC----B-----------------CCTTCCBSEEEEEEEEEEETTSCEEEEEEC
T ss_pred CCeEEeEEE-EEEEecccCCCC----e-----------------EecCEEEEEEEEEEEEEEECCCCEEEEeec
Confidence 468999995 888888853210 1 12223333333 345466678999999643
No 21
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=25.42 E-value=49 Score=27.06 Aligned_cols=19 Identities=11% Similarity=0.342 Sum_probs=15.1
Q ss_pred HHHhcCCC--CCchhhhhhhc
Q 024105 61 QIYLHSLP--IKEYQIIDTLI 79 (272)
Q Consensus 61 ei~~~slp--IkE~eIiD~~l 79 (272)
.+|..+|| +.|.+|.++|-
T Consensus 90 ~l~V~nLp~~~te~~L~~~F~ 110 (177)
T 2f3j_A 90 KLLVSNLDFGVSDADIQELFA 110 (177)
T ss_dssp EEEEECCCSCCCHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH
Confidence 37777887 78889988885
No 22
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=25.36 E-value=78 Score=23.47 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=24.7
Q ss_pred eeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCc
Q 024105 102 RTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 143 (272)
Q Consensus 102 r~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~ni 143 (272)
...|.+-|.|++. +|.|.|+++. .|-+.|-..|...|
T Consensus 46 ~~~F~~~v~v~g~---~~~G~G~SKK--~Aeq~AA~~AL~~L 82 (88)
T 3adl_A 46 RKEFTMTCRVERF---IEIGSGTSKK--LAKRNAAAKMLLRV 82 (88)
T ss_dssp SCEEEEEEEETTE---EEEEEESSHH--HHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCE---EEEEeeCCHH--HHHHHHHHHHHHHH
Confidence 4579999999762 7777777764 55566666555444
No 23
>3p3c_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3; 1.25A {Aquifex aeolicus} PDB: 1xxe_A* 2jt2_A* 1p42_A* 1yh8_A* 1yhc_A* 3p76_A* 2ies_A* 2ier_A* 2o3z_A* 2j65_A* 2go3_A* 2go4_A*
Probab=25.02 E-value=38 Score=30.93 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.8
Q ss_pred eEEEEeeeCCCCccee
Q 024105 171 SVTVRMVPAPRGAGIV 186 (272)
Q Consensus 171 sv~V~L~PAPrGtGiv 186 (272)
.|.|.|.|||.++||+
T Consensus 22 ~v~ltl~PA~~~tGi~ 37 (274)
T 3p3c_A 22 YSKLIIHPEKEGTGIR 37 (274)
T ss_dssp EEEEEEEECCTTCCEE
T ss_pred EEEEEEEeCCCCCCEE
Confidence 7899999999999986
No 24
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=22.33 E-value=43 Score=30.95 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=14.8
Q ss_pred eEEEEeeeCCCCccee
Q 024105 171 SVTVRMVPAPRGAGIV 186 (272)
Q Consensus 171 sv~V~L~PAPrGtGiv 186 (272)
.|.|.|.|||.++||+
T Consensus 23 ~v~ltl~PA~~~tGi~ 38 (299)
T 3uhm_A 23 KVYLTLKPAPVDTGIV 38 (299)
T ss_dssp EEEEEEECCCTTCCEE
T ss_pred EEEEEEEeCCCCCCEE
Confidence 7899999999999986
No 25
>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*
Probab=22.29 E-value=43 Score=30.96 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=14.7
Q ss_pred eEEEEeeeCCCCccee
Q 024105 171 SVTVRMVPAPRGAGIV 186 (272)
Q Consensus 171 sv~V~L~PAPrGtGiv 186 (272)
.|.|.|.|||.++||+
T Consensus 23 ~v~ltl~PA~~~tGi~ 38 (300)
T 3p3g_A 23 KVTLTLRPAPANTGVI 38 (300)
T ss_dssp EEEEEEECCCTTCCEE
T ss_pred EEEEEEEeCCCCCCEE
Confidence 7899999999999986
No 26
>2h8e_A Crossover junction endodeoxyribonuclease RUSA; homologous recombination, DNA repair, resolvase, hydrolase; 1.20A {Escherichia coli} PDB: 2h8c_A 1q8r_A
Probab=20.97 E-value=44 Score=25.88 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.5
Q ss_pred CChhhHHHHHHHHHHhhc
Q 024105 212 KTLGNFVKATFECLLKTY 229 (272)
Q Consensus 212 ~t~~N~aKAtf~AL~kt~ 229 (272)
.-+-|++||++|||...-
T Consensus 69 ~D~DN~~K~~~Dal~~~G 86 (120)
T 2h8e_A 69 RNLDNLQKAAFDALTKAG 86 (120)
T ss_dssp CCTHHHHHHHHHHHHHHT
T ss_pred CCccchHHHHHHHhcCCC
Confidence 357899999999999874
Done!