RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024105
(272 letters)
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 102 bits (256), Expect = 9e-29
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 83 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLS 142
L++ V+ + V K + G+R RF A VVVGD +GHVG G ++EV AIR AI AK +
Sbjct: 8 LEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKN 67
Query: 143 VIPV 146
+I V
Sbjct: 68 LIEV 71
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 99.7 bits (249), Expect = 1e-27
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 83 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLS 142
L+++++ + V K + G+ F A VVGD +G VG G ++EV AI+ A+ A+ +
Sbjct: 2 LQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRN 61
Query: 143 VIPVRRG 149
+I V
Sbjct: 62 MINVALN 68
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 69
Score = 97.4 bits (243), Expect = 6e-27
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 83 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLS 142
+++++ I + G+R RF A VVVGD G VGLG + EV A++ A A+ +
Sbjct: 2 FEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRN 61
Query: 143 VIPV 146
++ V
Sbjct: 62 MVEV 65
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 71
Score = 82.8 bits (205), Expect = 3e-21
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 159 HTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFV 218
T+P +V G G+ + + PA G G++A + VL+ AGI D+ + S GS + N V
Sbjct: 2 TTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMV 60
Query: 219 KATFECLLK 227
+ATF+ L +
Sbjct: 61 RATFDGLKQ 69
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 81.7 bits (202), Expect = 8e-21
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 160 TVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 219
T+P ++ + G+ + + PA G G++A VP+ +L+ AG+ D+ T GS + N
Sbjct: 2 TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPI-NIAY 60
Query: 220 ATFECLLK 227
AT E L +
Sbjct: 61 ATMEALRQ 68
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 81
Score = 78.6 bits (194), Expect = 2e-19
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 160 TVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 219
T+ V G V M PA G GI+A + VL+ AG+ +V + GST + N V+
Sbjct: 2 TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPI-NVVR 60
Query: 220 ATFECLLKTY 229
AT + L
Sbjct: 61 ATIDGLENMN 70
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 26.5 bits (58), Expect = 2.1
Identities = 22/129 (17%), Positives = 35/129 (27%), Gaps = 6/129 (4%)
Query: 4 RGGERGAFGRGFGRGGRGDRGGPRGRRRAGRREEEEKWVPVTKLGRLVREGKIRSLEQIY 63
RG G R G G RGG RG + E P+ K G + I
Sbjct: 8 RGSRTHGGGSHKNRRGAGHRGG-RGDAGRDKH-EFHNHEPLGKSGFKRPQKVQEEAATID 65
Query: 64 LHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVK 123
+ + + + L + + V + + V+G L +
Sbjct: 66 VREI----DENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLI 121
Query: 124 CSKEVATAI 132
A
Sbjct: 122 ADDFSEGAR 130
>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia
coli [TaxId: 562]}
Length = 118
Score = 25.6 bits (56), Expect = 4.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 106 KAFVVVGDTDGHVGLGVKCSKEVATAIR 133
F +V + + + +K S E+A +R
Sbjct: 34 VLFAMVKEVENRPAVSLKTSPELAELLR 61
>d1dq7a_ g.3.7.1 (A:) Scorpion toxin {Indian red scorpion (Buthus
tamulus), neurotoxin [TaxId: 34647]}
Length = 64
Score = 23.9 bits (52), Expect = 6.4
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 149 GYWGNK---IGRPHTVPCKVTGKC 169
+G P VP + +GKC
Sbjct: 40 VPYGVVCWCEDLPTPVPIRGSGKC 63
>d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273
{Salmonella typhimurium [TaxId: 90371]}
Length = 122
Score = 24.8 bits (53), Expect = 8.3
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 88 MKI---------MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIIL 138
+KI + + QT + + V G G+G A A G I+
Sbjct: 1 LKITSIEVFDCELKKRDQTMSSYNP---VLIRVNTDSGLSGIGEVGLAYGAGAKAGVGII 57
Query: 139 AKLSVIPVRRGYW 151
L+ + V
Sbjct: 58 RDLAPLIVGEDPL 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.423
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,047,255
Number of extensions: 51092
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 17
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)