Query 024106
Match_columns 272
No_of_seqs 165 out of 396
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 32.2 48 0.0016 25.3 3.9 30 61-94 43-72 (102)
2 3o39_A Periplasmic protein rel 28.6 88 0.003 23.8 5.0 36 59-94 16-51 (108)
3 2fmm_E Protein EMSY; ENT domai 25.4 69 0.0024 25.5 3.9 48 61-116 35-90 (133)
4 3d0w_A YFLH protein; GRAM-posi 24.1 28 0.00097 26.6 1.4 27 74-101 62-88 (104)
5 2k19_A Putative piscicolin 126 19.8 75 0.0025 24.0 2.9 22 59-80 75-96 (98)
6 2zrr_A Mundticin KS immunity p 17.3 71 0.0024 24.9 2.3 22 59-80 95-116 (118)
7 3itf_A Periplasmic adaptor pro 14.4 2.2E+02 0.0074 22.7 4.7 43 55-97 40-82 (145)
8 3oeo_A Spheroplast protein Y; 10.3 2.1E+02 0.007 22.4 3.3 41 57-97 30-70 (138)
9 1g2y_A Hepatocyte nuclear fact 9.4 84 0.0029 18.9 0.4 15 59-73 3-17 (32)
10 4adn_A FAR1; antibiotic resist 9.0 2E+02 0.0067 24.8 2.9 62 59-125 58-137 (222)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=32.20 E-value=48 Score=25.30 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHhhhccccCCCCHHHHHHHHHH
Q 024106 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 94 (272)
Q Consensus 61 L~~~Q~~~l~~L~~~~~~~~d~~~~~H~~~L~~L 94 (272)
|+..|+..|..|++..+ .+|.+|...|..+
T Consensus 43 Lsweke~LLt~LR~~L~----IS~eeH~~elrr~ 72 (102)
T 1uz3_A 43 LTKEKKDLLGELSKVLS----ISTERHRAEVRRA 72 (102)
T ss_dssp CCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 89999999999987665 5688999888776
No 2
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=28.61 E-value=88 Score=23.80 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhhhccccCCCCHHHHHHHHHH
Q 024106 59 FDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 94 (272)
Q Consensus 59 ~~L~~~Q~~~l~~L~~~~~~~~d~~~~~H~~~L~~L 94 (272)
++||..|...++.|.+......+....+-.+.|..|
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 789999999999999888777766655545545444
No 3
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=25.44 E-value=69 Score=25.53 Aligned_cols=48 Identities=29% Similarity=0.379 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHhCCCccc--------ccchhhhHhHhc
Q 024106 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL--------RDLISEQWKEMG 116 (272)
Q Consensus 61 L~~~Q~~~l~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~--------~~~~~~~Wk~lG 116 (272)
||..|+..|..|++..+ .++.+|...|.++-+. +.+ .+..+.+|..-|
T Consensus 35 LSweke~LLt~LR~~L~----IS~eeH~~elrr~~sD----e~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 35 LTKEKKDLLGELSKVLS----ISTERHRAEVRRAVND----ERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp CCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHC----HHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhC----CCcHHHHHHHHHhhhH----HHHHHHHHhhcCCcchHHHHHcc
Confidence 89999999999987665 5688999888776432 211 123457888777
No 4
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=24.11 E-value=28 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=21.3
Q ss_pred hhhccccCCCCHHHHHHHHHHHHHhCCC
Q 024106 74 LRIDVAYDSSIPEHREALRALWNAAFPD 101 (272)
Q Consensus 74 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 101 (272)
..+--.+||.|++ +++|++||+.+..+
T Consensus 62 dyLA~~vdP~N~E-erlLkELW~Va~ee 88 (104)
T 3d0w_A 62 DYLAKHEEPQNGE-EMLLQELWSVADED 88 (104)
T ss_dssp HHHHTCCCCCSHH-HHHHHHHHHHCCHH
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCHH
Confidence 4556778999985 69999999987544
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=19.84 E-value=75 Score=24.03 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccc
Q 024106 59 FDLTPAQEECLQRLQLRIDVAY 80 (272)
Q Consensus 59 ~~L~~~Q~~~l~~L~~~~~~~~ 80 (272)
..||+.|+..|..|++...+.|
T Consensus 75 i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 75 VTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCT
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5699999999999999988765
No 6
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=17.29 E-value=71 Score=24.93 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccc
Q 024106 59 FDLTPAQEECLQRLQLRIDVAY 80 (272)
Q Consensus 59 ~~L~~~Q~~~l~~L~~~~~~~~ 80 (272)
+.||+.|++.|+.|++...+.|
T Consensus 95 I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 95 VSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp CCCCHHHHHHHHHHHTTC----
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5599999999999999887765
No 7
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=14.43 E-value=2.2e+02 Score=22.70 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=29.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHH
Q 024106 55 PRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNA 97 (272)
Q Consensus 55 ~~~~~~L~~~Q~~~l~~L~~~~~~~~d~~~~~H~~~L~~Lw~~ 97 (272)
....++||+.|...++.|.+........-+.+..+.|..|...
T Consensus 40 m~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~a 82 (145)
T 3itf_A 40 MFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTA 82 (145)
T ss_dssp TTTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHcc
Confidence 4455889999999999998766655555455555566655443
No 8
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=10.29 E-value=2.1e+02 Score=22.41 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHH
Q 024106 57 PSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNA 97 (272)
Q Consensus 57 ~~~~L~~~Q~~~l~~L~~~~~~~~d~~~~~H~~~L~~Lw~~ 97 (272)
..++||+.|+..++.|.+...........+-.+.|..|...
T Consensus 30 ~~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li~a 70 (138)
T 3oeo_A 30 KDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIITS 70 (138)
T ss_dssp CCSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHHTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35889999999999998877776654444445566666443
No 9
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=9.39 E-value=84 Score=18.87 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHHH
Q 024106 59 FDLTPAQEECLQRLQ 73 (272)
Q Consensus 59 ~~L~~~Q~~~l~~L~ 73 (272)
.+||++|++.|..|-
T Consensus 3 skLs~LQ~eLL~aLL 17 (32)
T 1g2y_A 3 SKLSQLQTEMLAALL 17 (32)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 458899999988764
No 10
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=9.04 E-value=2e+02 Score=24.79 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHhCCCcc-----------------cccchhhhHhHhccCC-C
Q 024106 59 FDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEE-----------------LRDLISEQWKEMGWQG-K 120 (272)
Q Consensus 59 ~~L~~~Q~~~l~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~-----------------~~~~~~~~Wk~lGFQg-~ 120 (272)
+.+++.|++.|..+... . .+..+-+..|.+|-.-+.|=.+ +|......|+++.|=| .
T Consensus 58 ~~~~~eq~~lL~~i~~~---~--lt~~~~e~~L~~Lk~yV~pm~~lTe~qIrk~F~kaKkLklPdl~~~dw~~l~yLGW~ 132 (222)
T 4adn_A 58 GHIDDDIEESLKVLMNI---R--LSNKEIEAILNKFLEYVVPFELPSPQKLQKVFKKVKKIKIPQFEEYDLKVSSFVGWN 132 (222)
T ss_dssp SSCCHHHHHHHHHHTST---T--CCHHHHHHHHHHHHTTBCCCCCCCHHHHHHHTTTSTTCCCCCCCHHHHHTCSEEEEE
T ss_pred ccCCHHHHHHHHHHhcc---c--CCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhhhhhccCCCCcccCCcccCceEeee
Confidence 67899999888865321 1 1334456777777665554222 3455677999988888 8
Q ss_pred CCCCC
Q 024106 121 DPSTD 125 (272)
Q Consensus 121 dP~tD 125 (272)
||.++
T Consensus 133 D~~~~ 137 (222)
T 4adn_A 133 ELASN 137 (222)
T ss_dssp EGGGT
T ss_pred cCCCC
Confidence 89884
Done!