Query 024106
Match_columns 272
No_of_seqs 165 out of 396
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 18:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024106.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024106hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 24.5 38 0.0028 23.4 3.9 30 61-94 31-60 (90)
2 d1ya0a1 a.118.8.1 (A:1-497) SM 15.1 3E+02 0.022 23.0 9.0 26 232-257 263-288 (497)
3 d2c1wa1 d.294.1.1 (A:6-289) En 14.5 1.1E+02 0.008 25.2 5.3 57 81-142 124-180 (284)
4 d1w36b1 c.37.1.19 (B:1-485) Ex 11.8 31 0.0023 28.9 1.0 41 81-123 387-428 (485)
5 d1ob8a_ c.52.1.18 (A:) Hollida 8.5 63 0.0046 23.5 1.5 57 7-75 16-72 (124)
6 d2ifta1 c.66.1.46 (A:11-193) P 7.5 60 0.0044 24.3 1.0 28 126-154 51-84 (183)
7 d1lhta_ a.1.1.2 (A:) Myoglobin 6.4 1.3E+02 0.0093 21.4 2.4 12 108-119 142-153 (153)
8 d1gvna_ a.8.2.1 (A:) Plasmid m 6.4 3E+02 0.022 18.3 4.1 40 59-98 35-74 (88)
9 d1dxea_ c.1.12.5 (A:) 2-dehydr 6.0 2.5E+02 0.018 22.0 4.2 53 73-125 178-236 (253)
10 d1olma1 a.5.3.1 (A:1-75) Super 5.8 2.2E+02 0.016 17.8 3.1 20 59-78 6-25 (75)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.46 E-value=38 Score=23.44 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHhhhccccCCCCHHHHHHHHHH
Q 024106 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 94 (272)
Q Consensus 61 L~~~Q~~~l~~L~~~~~~~~d~~~~~H~~~L~~L 94 (272)
|+..|+..|..|++.. ..+|.+|...|.++
T Consensus 31 lsweke~lLt~LR~~L----~IS~eeHr~elrr~ 60 (90)
T d1uz3a1 31 LTKEKKDLLGELSKVL----SISTERHRAEVRRA 60 (90)
T ss_dssp CCHHHHHHHHHHHHHT----TCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----CCCcHHHHHHHHHh
Confidence 9999999999998665 55688999888776
No 2
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.14 E-value=3e+02 Score=23.04 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=21.1
Q ss_pred CCCcccHHHHHHHHHHHHHHhhcccC
Q 024106 232 RASYMDFNTVMKSTRRQLERELLLED 257 (272)
Q Consensus 232 ~at~mdF~~Vl~~~r~qL~r~L~~~~ 257 (272)
+.+..+|..+.+.+.+++...+..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (497)
T d1ya0a1 263 SKSLEKLSPLREKLEEQFKELLFQKA 288 (497)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhhHHHHHHHHHHHHHHHHhcCC
Confidence 56788899999999999988886543
No 3
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=14.50 E-value=1.1e+02 Score=25.21 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhHhHhccCCCCCCCCCCcchhhhHhhHHHHHh
Q 024106 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLAR 142 (272)
Q Consensus 81 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~tDFRg~G~LgL~~LlyF~~ 142 (272)
..+..+..+.|.+||=..+....-....+.-++.+ |=|+. -||.+|.|+.|-++|..
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHH
Confidence 34557889999999998876432222334566665 55541 25778999999888874
No 4
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.80 E-value=31 Score=28.87 Aligned_cols=41 Identities=22% Similarity=0.516 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhHhHh-ccCCCCCC
Q 024106 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEM-GWQGKDPS 123 (272)
Q Consensus 81 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~l-GFQg~dP~ 123 (272)
=..|+.+.++|+.||... ++..+ -.+|+.|..| ||+|.||.
T Consensus 387 QDts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 387 QDTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GGCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCHH
T ss_pred ccCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCHH
Confidence 346888999999998642 22222 2478899987 89998874
No 5
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=8.52 E-value=63 Score=23.54 Aligned_cols=57 Identities=12% Similarity=0.083 Sum_probs=33.6
Q ss_pred ceeEEeecccCCCCCCCCCCCccchhccchhhhcccccccccccCCCCCCCCCCCCHHHHHHHHHHHhh
Q 024106 7 SFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLR 75 (272)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~c~~~~~~~~~~~~~~~L~~~Q~~~l~~L~~~ 75 (272)
.|.++|....|.... ...+++++++. .|.+.--|++.... .+++..|.+.|....++
T Consensus 16 gf~vvR~~gSGs~~~-----~~pDllA~~~~------~~~~IEvKst~~~k-iyi~~eqie~L~~f~~~ 72 (124)
T d1ob8a_ 16 GFNAVRIPTSNSSPN-----PLPDIFATKGN------TLLSIECKSTWENK-VKVKEHQVRKLLDFLSM 72 (124)
T ss_dssp TCEEEECCC-----C-----CSCSEEEEETT------EEEEEEEEEESSSE-EEECHHHHHHHHHHHHT
T ss_pred CceEEEeccCCCCCC-----CCCCEEEeCCC------eEEEEEEEeccCCe-EEECHHHHHHHHHHHHH
Confidence 577777554443311 23478888763 34455555555543 78999999888876554
No 6
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=7.55 E-value=60 Score=24.27 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCcchhhhHhhH------HHHHhhCcHHHHHHHHh
Q 024106 126 FRGGGFISLENL------LYLARNFPKSFQDLLRK 154 (272)
Q Consensus 126 FRg~G~LgL~~L------lyF~~~~~~~~~~ll~~ 154 (272)
|-|+|.+||++| ++|++..++.+ +++.+
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~ 84 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKK 84 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchh-hhHhh
Confidence 679999999999 45888888765 34443
No 7
>d1lhta_ a.1.1.2 (A:) Myoglobin {Loggerhead sea turtle (Caretta caretta) [TaxId: 8467]}
Probab=6.37 E-value=1.3e+02 Score=21.41 Aligned_cols=12 Identities=42% Similarity=1.035 Sum_probs=9.2
Q ss_pred hhhhHhHhccCC
Q 024106 108 ISEQWKEMGWQG 119 (272)
Q Consensus 108 ~~~~Wk~lGFQg 119 (272)
..+..++.||||
T Consensus 142 l~~~y~e~g~~~ 153 (153)
T d1lhta_ 142 MASKYKEFGFQG 153 (153)
T ss_dssp HHHHHHTTTCCC
T ss_pred HHHHHHHcCCCC
Confidence 446788889987
No 8
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=6.37 E-value=3e+02 Score=18.27 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHh
Q 024106 59 FDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAA 98 (272)
Q Consensus 59 ~~L~~~Q~~~l~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~ 98 (272)
.+=+.+|...++.|.....+-.+...-+-.+...+.|+.+
T Consensus 35 ~d~~~l~vnLlnQL~~ak~v~lf~~sleELeaiheYwrsm 74 (88)
T d1gvna_ 35 NDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSM 74 (88)
T ss_dssp TCTTSHHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456788999999998889998888888888999999875
No 9
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=5.97 E-value=2.5e+02 Score=22.05 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=36.0
Q ss_pred HhhhccccCCCCHHHHHHHHHHHHHhCCC-ccc-----ccchhhhHhHhccCCCCCCCC
Q 024106 73 QLRIDVAYDSSIPEHREALRALWNAAFPD-EEL-----RDLISEQWKEMGWQGKDPSTD 125 (272)
Q Consensus 73 ~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~-~~~-----~~~~~~~Wk~lGFQg~dP~tD 125 (272)
..-++.|-+.+++++++++.++-+++... .+. .....++|.+.||+--.-.+|
T Consensus 178 s~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 178 AAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 34567777889999999999998887432 211 123357999999975434444
No 10
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.83 E-value=2.2e+02 Score=17.76 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHhhhcc
Q 024106 59 FDLTPAQEECLQRLQLRIDV 78 (272)
Q Consensus 59 ~~L~~~Q~~~l~~L~~~~~~ 78 (272)
-+||+.|+..|..|++....
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 35999999999999987764
Done!