BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024107
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 135/250 (54%), Gaps = 6/250 (2%)
Query: 2 DKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF--AKADDLKSLLEPLEDIARNF 59
+ +L F+ +N+ PLV + T+ + + IK + +F D L + A +F
Sbjct: 105 ENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 164
Query: 60 KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLESD-LTPSNIEE 117
KGKI+F +D +D + L FGL++ + V + ++K+ ES+ LT I E
Sbjct: 165 KGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITE 223
Query: 118 FCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCE 176
FC R L G + P+L SQ +P++ + V+++VGK F+D+ + K+V +E Y PWC C+
Sbjct: 224 FCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCK 283
Query: 177 TTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARS 236
+ +KL + +K +N+VIAK+D++ANE ++V +PTL F+PA I +
Sbjct: 284 QLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGER 343
Query: 237 SSKNIAAFIK 246
+ F++
Sbjct: 344 TLDGFKKFLE 353
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 80 LTLFGLEESKNTV-VTAFDNKAISKFLLESDLTPSN--IEEFCSRLLHGTLTPYLKSQPI 136
L+ FGLE + + V A KF+++ + + +E F G L YLKS+PI
Sbjct: 287 LSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPI 346
Query: 137 PDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLV 196
P++ + V++VV + FD++V N +KDVL+E Y PWC C+ + ++L + N+V
Sbjct: 347 PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIV 406
Query: 197 IAKIDASANEHPK-LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQS 255
IAK+DA+AN+ P +V +PT+ F PA K NP K + ++ FI +E
Sbjct: 407 IAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKKYEG---GRELSDFISYLQREATNP 463
Query: 256 P 256
P
Sbjct: 464 P 464
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KLQVEEYPTLLF 220
+L+E + PWC + + + E A KG+ + +AK+D +AN + K V YPTL
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATRLKGI--VPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 221 YPAGDKANPIKVSARSSSKNIAAFIKEQ 248
+ G++A ++ I + +K+Q
Sbjct: 82 FRDGEEAGA--YDGPRTADGIVSHLKKQ 107
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 125 GTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEK 184
G L YLKS+PIP++ + V++VV + FD++V N +KDVL+E Y PWC C+ + ++
Sbjct: 10 GNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKE 69
Query: 185 LAKHFKGLDNLVIAKIDASANEHPK-LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA 243
L + N+VIAK+DA+AN+ P +V +PT+ F PA K NP K + ++
Sbjct: 70 LGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKKYEG---GRELSD 126
Query: 244 FIKEQLKEKDQSP 256
FI +E P
Sbjct: 127 FISYLQREATSGP 139
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 139 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 198
++ V++VVGKTFD +V++ KDVL+E Y PWC C+ L K +KG +LVIA
Sbjct: 4 GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63
Query: 199 KIDASANE--HPKLQVEEYPTLLFYPAGDKANPIKVSARSSS-KNIAAFIKEQLKEKDQS 255
K+DA+AN+ + + +VE +PT+ F P+GDK NPIK + ++++ FI E ++ ++
Sbjct: 64 KMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRT 123
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 137 PDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-----KHFKG 191
P + V +VV K ++++VL+ KDVL+E Y PWC C+ + + E+L FK
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK- 60
Query: 192 LDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
D +VIAK+DA+AN+ P +++ +PT+ YPAG K P+ S + +++ FI E K
Sbjct: 61 -DRVVIAKVDATANDVPD-EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY 118
Query: 252 K 252
K
Sbjct: 119 K 119
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 95 AFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDD 154
AFD + K +LES S +++F L G +P +KSQ I +N +++V +VGK D+
Sbjct: 316 AFDELS-DKIVLESKAIESLVKDF----LKGDASPIVKSQEIFENQDSSVFQLVGKNHDE 370
Query: 155 LVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHF-KGLDNLVIAKIDASANEHPKLQVE 213
+V + KDVL+ Y PWC C+ + ++LA + +++IAK+D + N+ + +E
Sbjct: 371 IVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE 430
Query: 214 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 247
YPT++ YP G K+ + S ++ FIKE
Sbjct: 431 GYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 464
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 157 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQ--VEE 214
+ SH VL E + PWC C+ + + K A+ N+ +A+ID + N+ ++ +
Sbjct: 28 IQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPG 86
Query: 215 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248
+P+L + D N I +++ I F+ +Q
Sbjct: 87 FPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 120
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 57/85 (67%)
Query: 139 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 198
++ V+++VGK F+D+ + K+V +E Y PWC C+ + +KL + +K +N+VIA
Sbjct: 4 GSSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA 63
Query: 199 KIDASANEHPKLQVEEYPTLLFYPA 223
K+D++ANE ++V +PTL F+PA
Sbjct: 64 KMDSTANEVEAVKVHSFPTLKFFPA 88
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 11 NKFPLVTKLTDINSASVHSSPIKLQVYVF--AKADDLKSLLEPLEDIARNFKGKIMFTAV 68
N+ PLV + T+ + + IK + +F D L + A +FKGKI+F +
Sbjct: 11 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 69 DIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLESD-LTPSNIEEFCSRLLHGT 126
D +D + L FGL++ + V + ++K+ ES+ LT I EFC R L G
Sbjct: 71 D-SDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 129
Query: 127 LTPYLKSQPIPDN 139
+ P+L SQ +P++
Sbjct: 130 IKPHLMSQELPED 142
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 2 DKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF--AKADDLKSLLEPLEDIARNF 59
+ +L F+ +N+ PLV + T+ + + IK + +F D L + A +F
Sbjct: 94 ENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 153
Query: 60 KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLESD-LTPSNIEE 117
KGKI+F +D +D + L FGL++ + V + ++K+ ES+ LT I E
Sbjct: 154 KGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITE 212
Query: 118 FCSRLLHGTLTPYLKS 133
FC R L G + P+L S
Sbjct: 213 FCHRFLEGKIKPHLMS 228
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 156 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDN-LVIAKIDASANEHPKLQ--V 212
L +HK +L+E Y PWC C+ + + K A K + + +AK+DA+ Q V
Sbjct: 20 ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGV 79
Query: 213 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248
YPT+ F+ GD A+P + +A + +I ++K++
Sbjct: 80 RGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 139 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVI 197
++ V + FDD + + ++ Y PWC C+T + E+L+ K F GL + I
Sbjct: 4 GSSGTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKI 61
Query: 198 AKIDASA--NEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA---FIKEQLKEK 252
A++D +A N K V YPTLL + G KVS S +++ + F+ Q K++
Sbjct: 62 AEVDCTAERNICSKYSVRGYPTLLLFRGGK-----KVSEHSGGRDLDSLHRFVLSQAKDE 116
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASA--NEHP 208
FDD + + ++ Y PWC C+T + E+L+ K F GL + IA++D +A N
Sbjct: 10 FDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICS 67
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA---FIKEQLKEK 252
K V YPTLL + G KVS S +++ + F+ Q K++
Sbjct: 68 KYSVRGYPTLLLFRGGK-----KVSEHSGGRDLDSLHRFVLSQAKDE 109
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASA--NEHP 208
FDD + + ++ Y PWC C+T + E+L+ K F GL + IA++D +A N
Sbjct: 15 FDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICS 72
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNI 241
K V YPTLL + G KVS S +++
Sbjct: 73 KYSVRGYPTLLLFRGGK-----KVSEHSGGRDL 100
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 147 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 206
V + F+ VL S K VL++ + PWC C + IE+LAK ++G +V +D + N
Sbjct: 6 VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 207 HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 252
+ + PTLL + G + + + A KE LKE+
Sbjct: 66 AAQYGIRSIPTLLLFKNGQVVD----------RLVGAQPKEALKER 101
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WCV C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 139 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 198
+++ ++ + K+FD + N++ L+E Y PWC C+ S K AK G+ +
Sbjct: 14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAV 73
Query: 199 KIDASANEH--PKLQVEEYPTLLFY--PAGDKANPIKVSARSSS 238
D + N+ K V +PTL+ + P D + PI + +S S
Sbjct: 74 NCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFS 117
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + GD A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGDVA----------ATKVGALSKGQLKE 101
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC CE + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + +E++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A+ ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRSIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 147 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASA 204
V +FD VL + +L++ + WC C+ + ++++A ++G L +AK ID +
Sbjct: 7 VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP 64
Query: 205 NEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
PK + PTLL + G+ A + + A K QLKE
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEH 207
++FD VL + +L++ + WC C+ + ++++A ++G L +AK ID +
Sbjct: 10 ESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTA 67
Query: 208 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
PK + PTLL + G+ A + + A K QLKE
Sbjct: 68 PKYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 21 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 78
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 79 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 111
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKID 201
V ++ FD+ V + VLLE Y PWC C+ + + EK+A K D + +AKID
Sbjct: 18 GVWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKID 76
Query: 202 ASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 259
A++ K V YPT+ K + + + I A ++E + + D +P E
Sbjct: 77 ATSASMLASKFDVSGYPTIKIL---KKGQAVDYDGSRTQEEIVAKVRE-VSQPDWTPPPE 132
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 12 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 69
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 70 KYGIRGTPTLLLFKNGEVA----------ATKVGALSKGQLKE 102
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++ +A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ACKVGALSKGQLKE 101
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHF-KGLDNLVIAKIDA 202
V +V+ K D V+N +L+E Y PWC C+ + + EK AK K + +AK+DA
Sbjct: 131 VTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 190
Query: 203 SANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248
+A + V YPTL + K P + I ++ EQ
Sbjct: 191 TAETDLAKRFDVSGYPTLKIF---RKGRPYDYNGPREKYGIVDYMIEQ 235
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLV-IAKID 201
V ++ FD+ V + VLLE Y PWC C+ + + EK+A K D + +AKID
Sbjct: 16 GVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKID 74
Query: 202 ASANE--HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 259
A++ + V YPT+ K + + + I A ++E + + D +P E
Sbjct: 75 ATSASVLASRFDVSGYPTIKIL---KKGQAVDYEGSRTQEEIVAKVRE-VSQPDWTPPPE 130
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203
VQ V ++ + VL S V+++ + PWC C+ + I++LAK + G + D +
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 204 ANEHPKLQVEEYPTLLFYPAGDKANPI 230
+ + PT+LF+ G++ I
Sbjct: 62 PGIATQYNIRSIPTVLFFKNGERKESI 88
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSK 239
K + PTLL + G+ A KV A S +
Sbjct: 69 KYGIRGIPTLLLFKNGEVA-ATKVGALSKGQ 98
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSK 239
K + PTLL + G+ A KV A S +
Sbjct: 69 KYGIRGIPTLLLFKNGEVA-ATKVGALSKGQ 98
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KLQVEEYPTLLF 220
+L+E + PWC C+ + + E A KG+ + +AK+D +AN + K V YPTL
Sbjct: 24 MLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 221 YPAGDKANPIKVSARSSSKNIAAFIKEQ 248
+ G++A ++ I + +K+Q
Sbjct: 82 FRDGEEAG--AYDGPRTADGIVSHLKKQ 107
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+F+ VL + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHF-KGLDNLVIAKIDASANEH--P 208
FDD+V N+ +L+E Y PWC C+ + + EK AK K + +AK+DA+
Sbjct: 17 FDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAK 75
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248
+ V YPTL + K P + I ++ EQ
Sbjct: 76 RFDVSGYPTLKIF---RKGRPFDYNGPREKYGIVDYMIEQ 112
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKL 210
++ + VL S V+++ + PWC C+ + I++LAK + G + D + +
Sbjct: 8 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQY 67
Query: 211 QVEEYPTLLFYPAGDKANPI 230
+ PT+LF+ G++ I
Sbjct: 68 NIRSIPTVLFFKNGERKESI 87
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC + + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 147 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 206
V + FD+ L H VL++ + WC C + +E++AK ++G L++AK+D +E
Sbjct: 7 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLD--VDE 61
Query: 207 HPK----LQVEEYPTLLFYPAGDKANPIKVSARSSSK-NIAAFIKEQL 249
+PK +V PT++ + G P++V + K N A I++ L
Sbjct: 62 NPKTAXRYRVXSIPTVILFKDG---QPVEVLVGAQPKRNYQAKIEKHL 106
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 147 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 206
V + FD+ L H VL++ + WC C + +E++AK ++G L++AK+D +E
Sbjct: 6 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLD--VDE 60
Query: 207 HPK----LQVEEYPTLLFYPAGDKANPIKVSARSSSK-NIAAFIKEQL 249
+PK +V PT++ + G P++V + K N A I++ L
Sbjct: 61 NPKTAXRYRVXSIPTVILFKDG---QPVEVLVGAQPKRNYQAKIEKHL 105
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC + + ++++A ++G L +AK ID + P
Sbjct: 31 SFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 88
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 89 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 121
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD VL + +L++ + WC + + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K + PTLL + G+ A + + A K QLKE
Sbjct: 69 KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKGLDNLVIAK--IDASANEH 207
+FD VL + +L++ + WC C+ + ++++A ++G L +AK ID +
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTA 68
Query: 208 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
PK + PTLL + G+ A + + A K QLKE
Sbjct: 69 PKYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 102
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP- 208
+TF++ VL +++ Y PWC C+ + + E LA+ KG + K+D A
Sbjct: 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTC 68
Query: 209 -KLQVEEYPTLLFYPAGDKANPI---KVSARSSSKNIAAFIKEQL 249
K ++ YP++ Y I ++++R +K IAA I +L
Sbjct: 69 QKAGIKAYPSVKLYQYERAKKSIWEEQINSR-DAKTIAALIYGKL 112
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203
VQ V ++ + VL S V+++ + PWC + + I++LAK + G + D +
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 204 ANEHPKLQVEEYPTLLFYPAGDKANPI 230
+ + PT+LF+ G++ I
Sbjct: 62 PGIATQYNIRSIPTVLFFKNGERKESI 88
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 139 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 198
+T N+Q G F D V+NS V+++ + WC C+ ++EK+ G +V+A
Sbjct: 12 STTFNIQD--GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMA 67
Query: 199 KIDASANEHPKLQVE----EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 247
K+D ++H L +E PT+L GD + K + AF+K+
Sbjct: 68 KVD--IDDHTDLAIEYEVSAVPTVLAMKNGDVVD--KFVGIKDEDQLEAFLKK 116
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDN---LVIAKIDASANE 206
+TFD +V++ KDV + Y PW + + L+ N V A+ID +
Sbjct: 23 ETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARID--GEK 80
Query: 207 HP----KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 245
+P +++V +PT+ +Y DK P + S + + +F+
Sbjct: 81 YPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 208
+FD ++ + +L++ + WC C+ + ++++A ++G L +AK ID + P
Sbjct: 11 SFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
K PTLL + G+ A + + A K QLKE
Sbjct: 69 KYIERGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPK 209
+FD VL + VL++ + WC C+ + ++ K F G + +AK++ N E P
Sbjct: 11 SFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNIDDNPETPN 68
Query: 210 -LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 250
QV PTL+ G + K + A K QLK
Sbjct: 69 AYQVRSIPTLMLVRDG----------KVIDKKVGALPKSQLK 100
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 139 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 198
++ NV+++ + + +L+ D ++E Y PWC C+ + E A+ + L+ + IA
Sbjct: 4 GSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VNIA 59
Query: 199 KIDASANEHPKL 210
K+D + E P L
Sbjct: 60 KVDVT--EQPGL 69
>pdb|2DJK|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP2|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 133
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 14 PLVTKLTDINSASVHSSPIKLQVYVFAK-ADDLKSLLEPLEDIARNFKGKIMFTAVDIAD 72
PL+ ++ + S+ I L Y+FA+ A++ K L + L+ IA +G I F +D
Sbjct: 6 PLIGEIGPETYSDYMSAGIPL-AYIFAETAEERKELSDKLKPIAEAQRGVINFGTID--- 61
Query: 73 EDLAKPFLTLFGLEESKNTVVTAFDNKAISK-----FLLESDLTPSNIEEFCSRLLHGTL 127
AK F G K AF + ++K F E ++T I+ F + G +
Sbjct: 62 ---AKAFGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI 118
Query: 128 TPYLKSQPIPD 138
P +KS+PIP+
Sbjct: 119 EPSIKSEPIPE 129
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPA 223
L++ + WC TC+ + +E+LA ++G +++ +D + + K +V PTL+ +
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 224 GDKANPIKVSARSSSKNIAAFIKEQL 249
G + KV +N+A + + L
Sbjct: 84 GQPVD--KVVGFQPKENLAEVLDKHL 107
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-----FKGLDNLVIAKIDASANE 206
+D + + K V+++ + WC C+ + IEK A+ F LD +D ++
Sbjct: 18 YDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLD------VDEVSDV 71
Query: 207 HPKLQVEEYPTLLFYPAGDK------ANPIKV 232
K +V PTL+FY G + ANP +
Sbjct: 72 AQKAEVSSMPTLIFYKGGKEVTRVVGANPAAI 103
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-----FKGLDNLVIAKIDASANE 206
+D + + K V+++ + WC C+ + IEK A+ F LD +D ++
Sbjct: 11 YDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLD------VDEVSDV 64
Query: 207 HPKLQVEEYPTLLFYPAGDK------ANPIKV 232
K +V PTL+FY G + ANP +
Sbjct: 65 AQKAEVSSMPTLIFYKGGKEVTRVVGANPAAI 96
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPA 223
L++ + WC +C+ + +E+LA ++G +++ +D + + K +V PTL+ +
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 224 GDKANPIKVSARSSSKNIAAFIKEQL 249
G + KV +N+A + + L
Sbjct: 83 GQPVD--KVVGFQPKENLAEVLDKHL 106
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 28/117 (23%)
Query: 151 TFDDLVLNSHKDVLLEVYTPWCVT--------------CETTSKQIEKLAKHFKGLDNLV 196
+FD VL + +L++ + WC C+ + ++++A ++G L
Sbjct: 12 SFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG--KLT 69
Query: 197 IAK--IDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
+AK ID + PK + PTLL + G+ A + + A K QLKE
Sbjct: 70 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 116
>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72
pdb|3EC3|B Chain B, Crystal Structure Of The Bb Fragment Of Erp72
Length = 250
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 70 IADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSN-IEEFCSRLLHGTLT 128
IADE+ + GL ES V A +++ KF E + S+ + EF G L
Sbjct: 173 IADEEDYATEVKDLGLSESGGDVNAAILDESGKKFAXEPEEFDSDALREFVXAFKKGKLK 232
Query: 129 PYLKSQPIPDNTNA 142
P +KSQP+P N
Sbjct: 233 PVIKSQPVPKNNKG 246
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 155 LVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP------ 208
LV K V+L++Y WCV C+ K + K L + V+ + + +AN+
Sbjct: 23 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 82
Query: 209 KLQVEEYPTLLFYPAGDKANP-IKVSARSSSKNIAAFIKEQ 248
L V PT+LF+ + +P +V+ ++ +A ++++
Sbjct: 83 HLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 123
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 139 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK--GLDNLV 196
++ +V + +FD VL+S ++E Y PWC C+ + A K +
Sbjct: 4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 63
Query: 197 IAKIDASANE--HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA 243
+A +DA+ N+ + + +PT+ + G+ +P+ + +I +
Sbjct: 64 LAAVDATVNQVLASRYGIRGFPTIKIFQKGE--SPVDYDGGRTRSDIVS 110
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 155 LVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP------ 208
LV K V+L++Y WCV C+ K + K L + V+ + + +AN+
Sbjct: 26 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 85
Query: 209 KLQVEEYPTLLFYPAGDKANP-IKVSARSSSKNIAAFIKEQ 248
L V PT+LF+ + +P +V+ ++ +A ++++
Sbjct: 86 HLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLF 220
K +++ Y WC C+ + +E+L+K + G + +D ++ PT+ F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWF 111
Query: 221 YPAGDKANPIKVSARSSSKNIAAFIKEQLK 250
P K P N+ A KEQLK
Sbjct: 112 VPM--KGEP--------QVNMGALSKEQLK 131
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLF 220
K +++ Y WC C+ + +E+L+K + G + +D ++ PT+ F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWF 111
Query: 221 YPAGDKANPIKVSARSSSKNIAAFIKEQLK 250
P K P N+ A KEQLK
Sbjct: 112 VPM--KGEP--------QVNMGALSKEQLK 131
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-----FKGLDNLVIAKIDASANE 206
+D + + K V+++ + WC + + IEK A+ F LD +D ++
Sbjct: 19 YDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLD------VDEVSDV 72
Query: 207 HPKLQVEEYPTLLFYPAGDK------ANPIKV 232
K +V PTL+FY G + ANP +
Sbjct: 73 AQKAEVSSMPTLIFYKGGKEVTRVVGANPAAI 104
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-----FKGLDNLVIAKIDASANE 206
+D + + K V+++ + WC + + IEK A+ F LD +D ++
Sbjct: 11 YDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLD------VDEVSDV 64
Query: 207 HPKLQVEEYPTLLFYPAGDK------ANPIKV 232
K +V PTL+FY G + ANP +
Sbjct: 65 AQKAEVSSMPTLIFYKGGKEVTRVVGANPAAI 96
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQ 211
F+ V+ S L+E Y PWC C+ + + +K A K + + D + +
Sbjct: 27 FNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYG 86
Query: 212 VEEYPTLLFYPA 223
V+ +PT+ + A
Sbjct: 87 VQGFPTIKIFGA 98
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEY 215
N + ++++ + WC C + ++E LAK ++ AK+D NE K V
Sbjct: 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVE---FAKVDVDQNEEAAAKYSVTAM 73
Query: 216 PTLLFYPAG 224
PT +F G
Sbjct: 74 PTFVFIKDG 82
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTL 218
K +++ Y WC C+ + +++LAK + G +VI K+D + + P++
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQELAGAFGIRSIPSI 96
Query: 219 LFYP 222
LF P
Sbjct: 97 LFIP 100
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP- 208
+TF++ VL +++ Y PW + + + E LA+ KG + K+D A
Sbjct: 665 QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTC 722
Query: 209 -KLQVEEYPTLLFYPAGDKANPI---KVSARSSSKNIAAFIK---EQLKEKDQSPKDE 259
K ++ YP++ Y I ++++R +K IAA I E L+ + + KDE
Sbjct: 723 QKAGIKAYPSVKLYQYERAKKSIWEEQINSR-DAKTIAALIYGKLETLQSQVKRNKDE 779
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 80 LTLFGLEESKNTV-VTAFDNKAISKFLLESDLTPSN--IEEFCSRLLHGTLTPYLKSQPI 136
L+ FGLE + + V A KF+ + + + +E F G L YLKS+PI
Sbjct: 183 LSDFGLESTAGEIPVVAIRTAKGEKFVXQEEFSRDGKALERFLQDYFDGNLKRYLKSEPI 242
Query: 137 PDNTNA 142
P++ +
Sbjct: 243 PESNDG 248
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 154 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVE 213
D + K V+++ Y WC C+ + IEK ++ + D + +D + K +V
Sbjct: 12 DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQKNEVS 70
Query: 214 EYPTLLFYPAGDK------ANPIKV 232
PTLL + G + ANP +
Sbjct: 71 AMPTLLLFKNGKEVAKVVGANPAAI 95
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 154 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVE 213
D + K V+++ Y WC C+ + IEK ++ + D + +D + K +V
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQKNEVS 76
Query: 214 EYPTLLFYPAGDK------ANPIKV 232
PTLL + G + ANP +
Sbjct: 77 AMPTLLLFKNGKEVAKVVGANPAAI 101
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 154 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQ 211
D +NS + + Y+P C C + + AK GL L I ++ +
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL--LRIGAVNCGDDRMLCRMKG 165
Query: 212 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 250
V YP+L + +G A +K + S +++ AF + ++
Sbjct: 166 VNSYPSLFIFRSGMAA--VKYNGDRSKESLVAFAMQHVR 202
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK--GLDNLVIAKIDASANEH 207
K FD L SH+ +++ + WC C + IE+LA+ + G L +++E+
Sbjct: 7 KNFDSF-LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKL-------NSDEN 58
Query: 208 P----KLQVEEYPTLLFYPAGDKANPI 230
P + V PT++F+ G+ + I
Sbjct: 59 PDIAARYGVMSLPTVIFFKDGEPVDEI 85
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLF 220
++L + WC C S +++KL K++ + + K+D NE K V+ PT++
Sbjct: 45 IVLYFFAKWCQACTMQSTEMDKLQKYYG--KRIYLLKVDLDKNESLARKFSVKSLPTIIL 102
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 146 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205
++ + FD+++ N +K VL++ + WC C +K+A+ +KG V +++ N
Sbjct: 8 VLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVDEN 64
Query: 206 EH--PKLQVEEYPTLLFYPAG 224
+ K V PT L + G
Sbjct: 65 QKIADKYSVLNIPTTLIFVNG 85
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 155 LVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA----KHFKGLDNLVIAKIDASANEHP-- 208
LV K V+L++Y WCV SK+ EK + K L + V+ + + +AN+
Sbjct: 26 LVEAKGKPVMLDLYADWCV----ASKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDV 81
Query: 209 ----KLQVEEYPTLLFYPAGDKANP-IKVSARSSSKNIAAFIKEQ 248
L V PT+LF+ + +P +V+ ++ +A ++++
Sbjct: 82 ALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 141 NANVQIVVGKTFDDL--VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 198
+VQ++ ++D V K V+++ + WC C+ EK++ G D +
Sbjct: 14 RGSVQVI--SSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFY 70
Query: 199 KIDASANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSA 234
K+D ++ + PT +F+ G K A+P K+ A
Sbjct: 71 KVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQA 114
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTL 218
+ K V+++ WC C + + AK F G L + +D K VE PT
Sbjct: 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV-DVDELKEVAEKYNVEAMPTF 93
Query: 219 LFYPAGDKANPIKVSAR 235
LF G +A+ + V AR
Sbjct: 94 LFIKDGAEADKV-VGAR 109
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 171 WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAG 224
WC C+T + +EK+A F + AK+DA N K +V + PT + +G
Sbjct: 48 WCGPCKTIERPMEKIAYEFPTVK---FAKVDADNNSEIVSKCRVLQLPTFIIARSG 100
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 149 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH 188
G+ + VL K VLL V+ WC TC + + +L+
Sbjct: 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 96
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT 217
++ K V+++ WC C + + AK F G L + +D + VE PT
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKV-DVDELKDVAEAYNVEAMPT 84
Query: 218 LLFYPAGDKANPIKVSAR 235
LF G+K + + V R
Sbjct: 85 FLFIKDGEKVDSV-VGGR 101
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 149 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA 186
G+ + VL K VLL V+ WC TC + + +L+
Sbjct: 40 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 77
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 149 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA 186
G+ + VL K VLL V+ WC TC + + +L+
Sbjct: 40 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 77
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HPKLQVEEY 215
+ K V+++ WC C + LAK F N V K+D + + VE
Sbjct: 32 TAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAM 88
Query: 216 PTLLFYPAGD 225
PT LF GD
Sbjct: 89 PTFLFMKEGD 98
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQ 211
F+ VL + + VL+ + WC C+ S I A + +V +ID + K +
Sbjct: 17 FESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK 76
Query: 212 VEEYPTL 218
VE P L
Sbjct: 77 VEGVPAL 83
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQ--VEEYPTL 218
K +L + PWC TC+ + + ++A + + +A +D + P +Q V +YP
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD----QVPAMQEFVNKYPVK 95
Query: 219 LFYPAGDKANPIKVSARSSSKNIAAFI 245
F D + + + + AF+
Sbjct: 96 TFTQLADTDGSVWANFGVTQQPAYAFV 122
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLF 220
K V+++ WC C+ L++ + + L + +D + + PK + PTLL
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVAPKYGIRGIPTLLL 79
Query: 221 YPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251
+ G+ A + + A K QLKE
Sbjct: 80 FKNGEVA----------ATKVGALSKGQLKE 100
>pdb|1G7E|A Chain A, Nmr Structure Of N-Domain Of Erp29 Protein
Length = 122
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 181 QIEKLAKHFKGLDNLVIAKIDAS---------ANEHPKLQVEEYPTLLFYPAGDKANPIK 231
+ ++LA++ D+L++A++ S +E KL E YP + GD NP+
Sbjct: 40 EFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVP 99
Query: 232 VSARSSSKNIAAFIKEQ 248
S I ++K Q
Sbjct: 100 YSGAVKVGAIQRWLKGQ 116
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQ--VEEYPTL 218
K +L + PWC TC+ + + ++A + + +A +D + P +Q V +YP
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD----QVPAMQEFVNKYPVK 81
Query: 219 LFYPAGDKANPIKVSARSSSKNIAAFI 245
F D + + + + AF+
Sbjct: 82 TFTQLADTDGSVWANFGVTQQPAYAFV 108
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 156 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLA 186
VL K VLL V+ WC TC + + +L+
Sbjct: 8 VLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 38
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHF 189
K V+L+++T WC C+ + + EKLA+ +
Sbjct: 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY 54
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHF 189
K V+L+++T WC C+ + + EKLA+ +
Sbjct: 36 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY 66
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 154 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVE 213
D + K V+++ Y WC + + IEK ++ + D + +D + K +V
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQKNEVS 76
Query: 214 EYPTLLFYPAGDK------ANPIKV 232
PTLL + G + ANP +
Sbjct: 77 AMPTLLLFKNGKEVAKVVGANPAAI 101
>pdb|4F3L|A Chain A, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 361
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 99 KAISKFLLESD-LTPSNIE-----EFCSRLLHGTLTP 129
K +S LLESD LTP ++ EFC +L GT+ P
Sbjct: 145 KILSTHLLESDSLTPEYLKSKNQLEFCCHMLRGTIDP 181
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 156 VLNSHKD--VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVE 213
+L HK+ V+++ + WC C+T + ++L++ + + V +D K +
Sbjct: 18 LLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI--FVKVDVDKLEETARKYNIS 75
Query: 214 EYPTLLFYPAGDKANPI 230
PT + G+K +
Sbjct: 76 AMPTFIAIKNGEKVGDV 92
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 156 VLNSHKD--VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVE 213
+L HK+ V+++ + WC C+T + ++L++ + + V +D K +
Sbjct: 27 LLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI--FVKVDVDKLEETARKYNIS 84
Query: 214 EYPTLLFYPAGDKANPI 230
PT + G+K +
Sbjct: 85 AMPTFIAIKNGEKVGDV 101
>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
pdb|2QC7|B Chain B, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
Length = 240
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 181 QIEKLAKHFKGLDNLVIA---------KIDASANEHPKLQVEEYPTLLFYPAGDKANPIK 231
+ ++LA++ D+L++A K++ +E KL E YP + GD NP+
Sbjct: 41 EFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVP 100
Query: 232 VSARSSSKNIAAFIKEQ 248
+ I ++K Q
Sbjct: 101 YTGAVKVGAIQRWLKGQ 117
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA-KIDASANEHPKLQVEE 214
K +L+ ++ WCV C +++L G + V+A ID E PK ++E
Sbjct: 60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKE 115
>pdb|3CW2|K Chain K, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|L Chain L, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|M Chain M, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|N Chain N, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus
Length = 139
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 114 NIEEFCSRLLHG---TLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTP 170
N E+C R+ + LK P N + ++V+ F V+N+ + L+ Y
Sbjct: 46 NFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVE 105
Query: 171 WCVTCETTSKQIEKLAKHF 189
C TC++ ++K K +
Sbjct: 106 -CSTCKSLDTILKKEKKSW 123
>pdb|2NXU|A Chain A, Atomic Structure Of Translation Initiation Factor Aif2
Beta-Subunit From Archaebacteria Sulfolobus
Solfataricus: High Resolution Nmr In Solution
Length = 146
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 114 NIEEFCSRLLHG---TLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTP 170
N E+C R+ + LK P N + ++V+ F V+N+ + L+ Y
Sbjct: 53 NFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVE 112
Query: 171 WCVTCETTSKQIEKLAKHF 189
C TC++ ++K K +
Sbjct: 113 -CSTCKSLDTILKKEKKSW 130
>pdb|2QMU|C Chain C, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|C Chain C, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 138
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 114 NIEEFCSRLLHG---TLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTP 170
N E+C R+ + LK P N + ++V+ F V+N+ + L+ Y
Sbjct: 45 NFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVE 104
Query: 171 WCVTCETTSKQIEKLAKHF 189
C TC++ ++K K +
Sbjct: 105 -CSTCKSLDTILKKEKKSW 122
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID-----ASANEHPKLQV 212
S K ++++ WC C+ + +LAK F N+ K+D A A E V
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEE---WNV 77
Query: 213 EEYPTLLFYPAG 224
E PT +F G
Sbjct: 78 EAMPTFIFLKDG 89
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 217 TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEK 264
+L+ +P+G K N IK A N+ KE+ +D QWKE+
Sbjct: 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE--------EDGQWKEE 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,756,718
Number of Sequences: 62578
Number of extensions: 304542
Number of successful extensions: 836
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 132
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)