Query 024107
Match_columns 272
No_of_seqs 149 out of 2104
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 6.9E-40 1.5E-44 283.0 23.6 263 3-272 226-493 (493)
2 PTZ00102 disulphide isomerase; 100.0 1.7E-34 3.6E-39 259.7 27.8 243 2-253 220-469 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 3.3E-34 7.2E-39 256.8 27.7 246 2-253 205-458 (462)
4 KOG0191 Thioredoxin/protein di 100.0 6.4E-28 1.4E-32 210.4 19.3 223 14-252 29-255 (383)
5 TIGR02187 GlrX_arch Glutaredox 99.9 1.2E-23 2.5E-28 169.4 17.8 193 25-247 14-214 (215)
6 KOG0910 Thioredoxin-like prote 99.9 3.5E-21 7.5E-26 140.7 9.4 104 143-250 44-149 (150)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.8 3.3E-20 7.1E-25 133.1 11.3 101 141-245 8-113 (113)
8 PF00085 Thioredoxin: Thioredo 99.8 1E-19 2.2E-24 129.4 10.9 101 144-248 1-103 (103)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 7.5E-20 1.6E-24 130.5 9.9 100 143-245 2-104 (104)
10 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.2E-19 4.7E-24 128.0 11.7 103 143-245 1-104 (104)
11 PTZ00102 disulphide isomerase; 99.8 2.7E-18 5.9E-23 154.6 21.4 224 14-252 32-341 (477)
12 KOG0190 Protein disulfide isom 99.8 6.5E-19 1.4E-23 153.2 16.5 207 13-251 24-237 (493)
13 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.6E-19 3.6E-24 128.0 10.7 97 144-245 3-101 (101)
14 cd02996 PDI_a_ERp44 PDIa famil 99.8 4.7E-19 1E-23 127.3 10.3 101 143-245 2-108 (108)
15 KOG0912 Thiol-disulfide isomer 99.8 3.1E-18 6.8E-23 137.6 15.0 215 19-264 1-227 (375)
16 cd03002 PDI_a_MPD1_like PDI fa 99.8 8.8E-19 1.9E-23 126.1 10.5 101 144-246 2-109 (109)
17 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 8.6E-19 1.9E-23 124.3 9.7 100 14-119 1-101 (101)
18 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.5E-18 3.2E-23 124.5 10.0 102 12-119 7-113 (113)
19 KOG4277 Uncharacterized conser 99.8 6.6E-18 1.4E-22 135.7 14.7 179 32-248 44-230 (468)
20 cd03065 PDI_b_Calsequestrin_N 99.8 2.2E-18 4.8E-23 124.4 10.6 102 143-249 10-119 (120)
21 TIGR01130 ER_PDI_fam protein d 99.8 1.3E-17 2.8E-22 149.6 17.6 207 15-250 2-216 (462)
22 COG3118 Thioredoxin domain-con 99.8 2.2E-18 4.7E-23 139.3 10.6 105 143-251 24-132 (304)
23 cd03001 PDI_a_P5 PDIa family, 99.8 4.2E-18 9.1E-23 121.2 10.5 99 144-245 2-102 (103)
24 PRK09381 trxA thioredoxin; Pro 99.8 9.1E-18 2E-22 120.8 11.9 103 143-249 4-108 (109)
25 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.9E-18 6.3E-23 122.3 9.1 101 14-119 1-104 (104)
26 cd02996 PDI_a_ERp44 PDIa famil 99.8 6.2E-18 1.3E-22 121.4 9.3 100 15-119 2-108 (108)
27 cd02994 PDI_a_TMX PDIa family, 99.8 1.2E-17 2.7E-22 118.4 10.6 98 143-247 2-101 (101)
28 cd02956 ybbN ybbN protein fami 99.8 9.5E-18 2.1E-22 117.8 9.9 93 150-246 1-96 (96)
29 PF00085 Thioredoxin: Thioredo 99.7 1.6E-17 3.5E-22 118.1 10.7 100 16-121 1-102 (103)
30 cd02993 PDI_a_APS_reductase PD 99.7 1.8E-17 3.9E-22 119.1 10.8 101 143-245 2-109 (109)
31 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.9E-17 4.2E-22 117.5 10.3 98 144-245 2-102 (102)
32 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.3E-17 4.9E-22 117.7 10.7 101 144-245 2-105 (105)
33 cd02963 TRX_DnaJ TRX domain, D 99.7 9.2E-18 2E-22 120.9 8.4 99 146-247 8-110 (111)
34 TIGR01126 pdi_dom protein disu 99.7 2.4E-17 5.1E-22 117.0 9.9 100 147-249 1-102 (102)
35 PHA02278 thioredoxin-like prot 99.7 1.7E-17 3.7E-22 117.1 8.6 90 150-244 5-100 (103)
36 PTZ00443 Thioredoxin domain-co 99.7 3.3E-17 7.2E-22 131.1 10.8 108 141-252 29-142 (224)
37 cd02954 DIM1 Dim1 family; Dim1 99.7 1.8E-17 3.9E-22 117.9 7.1 82 149-234 2-86 (114)
38 cd03007 PDI_a_ERp29_N PDIa fam 99.7 3.9E-17 8.5E-22 116.5 8.7 101 16-122 3-115 (116)
39 cd02999 PDI_a_ERp44_like PDIa 99.7 5.6E-17 1.2E-21 114.5 8.8 88 152-245 9-100 (100)
40 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.3E-17 1.1E-21 115.8 8.6 98 144-248 3-115 (116)
41 PRK10996 thioredoxin 2; Provis 99.7 1.8E-16 3.9E-21 118.7 10.8 102 143-249 36-139 (139)
42 TIGR01068 thioredoxin thioredo 99.7 1.8E-16 3.8E-21 112.2 10.1 98 148-249 2-101 (101)
43 cd02997 PDI_a_PDIR PDIa family 99.7 1.8E-16 3.9E-21 112.9 10.1 99 144-245 2-104 (104)
44 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.4E-16 3.1E-21 114.5 9.3 102 16-120 2-109 (109)
45 cd03065 PDI_b_Calsequestrin_N 99.7 1.8E-16 3.9E-21 114.5 9.7 105 12-123 7-119 (120)
46 cd03001 PDI_a_P5 PDIa family, 99.7 2.5E-16 5.5E-21 111.9 9.6 99 16-119 2-102 (103)
47 cd02994 PDI_a_TMX PDIa family, 99.7 3.5E-16 7.5E-21 110.9 10.1 97 15-120 2-100 (101)
48 cd02993 PDI_a_APS_reductase PD 99.7 2.7E-16 5.9E-21 113.0 8.8 101 15-119 2-109 (109)
49 cd02948 TRX_NDPK TRX domain, T 99.7 3.7E-16 8.1E-21 110.8 9.3 95 148-247 6-101 (102)
50 cd02985 TRX_CDSP32 TRX family, 99.7 3.9E-16 8.5E-21 110.9 9.3 92 149-246 3-100 (103)
51 KOG0910 Thioredoxin-like prote 99.7 3.7E-16 8.1E-21 114.4 8.9 105 14-124 43-149 (150)
52 cd02962 TMX2 TMX2 family; comp 99.7 6.1E-16 1.3E-20 116.6 10.2 99 132-234 19-126 (152)
53 cd02965 HyaE HyaE family; HyaE 99.7 8.1E-16 1.8E-20 108.6 9.8 94 144-242 12-109 (111)
54 cd02957 Phd_like Phosducin (Ph 99.7 6.2E-16 1.3E-20 111.8 9.4 89 142-235 4-95 (113)
55 PLN02309 5'-adenylylsulfate re 99.7 9.5E-16 2.1E-20 134.3 11.9 106 141-248 344-456 (457)
56 TIGR00424 APS_reduc 5'-adenyly 99.7 1.4E-15 3E-20 133.4 12.4 106 140-247 349-461 (463)
57 PTZ00443 Thioredoxin domain-co 99.6 1.1E-15 2.5E-20 122.2 10.8 106 13-124 29-140 (224)
58 cd02992 PDI_a_QSOX PDIa family 99.6 2.7E-15 5.8E-20 108.5 11.1 101 143-243 2-110 (114)
59 cd03005 PDI_a_ERp46 PDIa famil 99.6 9.2E-16 2E-20 108.8 8.5 97 16-119 2-102 (102)
60 cd03000 PDI_a_TMX3 PDIa family 99.6 2.3E-15 5E-20 107.2 10.3 94 150-248 7-103 (104)
61 KOG0191 Thioredoxin/protein di 99.6 1.2E-15 2.6E-20 133.3 10.5 217 3-227 125-357 (383)
62 TIGR01126 pdi_dom protein disu 99.6 1.4E-15 2.9E-20 107.9 8.9 98 19-122 1-101 (102)
63 cd02961 PDI_a_family Protein D 99.6 1.5E-15 3.3E-20 107.1 8.8 98 146-245 2-101 (101)
64 PRK09381 trxA thioredoxin; Pro 99.6 5.1E-15 1.1E-19 106.4 11.3 105 13-123 2-108 (109)
65 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 3.1E-15 6.6E-20 106.5 9.3 98 16-119 2-104 (104)
66 cd02989 Phd_like_TxnDC9 Phosdu 99.6 4.4E-15 9.6E-20 107.1 10.1 98 142-245 4-112 (113)
67 cd02998 PDI_a_ERp38 PDIa famil 99.6 3.2E-15 7E-20 106.5 9.3 99 16-119 2-105 (105)
68 cd02949 TRX_NTR TRX domain, no 99.6 3.6E-15 7.8E-20 104.8 9.3 91 152-246 5-97 (97)
69 KOG0907 Thioredoxin [Posttrans 99.6 2.1E-15 4.6E-20 106.5 8.0 84 158-247 19-104 (106)
70 cd02999 PDI_a_ERp44_like PDIa 99.6 5.3E-15 1.1E-19 104.3 8.3 83 29-119 16-100 (100)
71 cd02987 Phd_like_Phd Phosducin 99.6 1E-14 2.2E-19 113.1 10.7 103 140-247 60-173 (175)
72 cd02997 PDI_a_PDIR PDIa family 99.6 7.5E-15 1.6E-19 104.5 9.0 100 16-119 2-104 (104)
73 PLN00410 U5 snRNP protein, DIM 99.6 1.1E-14 2.3E-19 107.7 9.8 99 148-250 10-121 (142)
74 cd02963 TRX_DnaJ TRX domain, D 99.6 8.3E-15 1.8E-19 105.5 8.8 101 15-121 5-110 (111)
75 cd02984 TRX_PICOT TRX domain, 99.6 1E-14 2.2E-19 102.5 8.8 92 149-245 2-96 (97)
76 cd02982 PDI_b'_family Protein 99.6 1.4E-14 3E-19 103.0 9.5 96 22-122 3-102 (103)
77 cd02975 PfPDO_like_N Pyrococcu 99.6 1.5E-14 3.2E-19 104.4 9.4 90 158-250 20-111 (113)
78 cd02950 TxlA TRX-like protein 99.6 3.8E-14 8.1E-19 106.4 11.8 98 150-252 11-113 (142)
79 cd02956 ybbN ybbN protein fami 99.6 1.9E-14 4.2E-19 100.9 9.6 91 23-119 2-95 (96)
80 PRK10996 thioredoxin 2; Provis 99.6 2.1E-14 4.5E-19 107.5 10.3 102 15-122 36-138 (139)
81 cd02986 DLP Dim1 family, Dim1- 99.6 2.6E-14 5.7E-19 100.8 9.7 95 150-247 3-109 (114)
82 cd02961 PDI_a_family Protein D 99.6 1.1E-14 2.5E-19 102.6 8.0 97 18-119 2-101 (101)
83 COG3118 Thioredoxin domain-con 99.6 1.7E-14 3.6E-19 117.0 9.8 106 13-125 22-132 (304)
84 PTZ00062 glutaredoxin; Provisi 99.6 7.6E-14 1.6E-18 110.0 13.2 161 20-225 5-177 (204)
85 KOG0912 Thiol-disulfide isomer 99.6 5.7E-15 1.2E-19 119.0 6.8 115 148-264 2-123 (375)
86 cd02953 DsbDgamma DsbD gamma f 99.6 1.9E-14 4.1E-19 102.5 8.2 91 151-246 3-104 (104)
87 PTZ00051 thioredoxin; Provisio 99.5 4.4E-14 9.5E-19 99.4 8.8 92 144-242 2-96 (98)
88 TIGR00424 APS_reduc 5'-adenyly 99.5 5E-14 1.1E-18 123.6 10.8 107 12-122 349-462 (463)
89 PF13848 Thioredoxin_6: Thiore 99.5 1.5E-12 3.2E-17 102.4 18.3 173 47-247 7-184 (184)
90 cd02988 Phd_like_VIAF Phosduci 99.5 4.6E-14 1E-18 110.8 9.6 102 140-247 80-190 (192)
91 cd03000 PDI_a_TMX3 PDIa family 99.5 7.8E-14 1.7E-18 99.3 9.9 93 22-122 7-103 (104)
92 KOG1731 FAD-dependent sulfhydr 99.5 8.5E-14 1.9E-18 121.4 10.5 220 14-252 39-272 (606)
93 TIGR01295 PedC_BrcD bacterioci 99.5 1.8E-13 3.9E-18 99.9 10.5 97 143-246 7-121 (122)
94 PLN02309 5'-adenylylsulfate re 99.5 1E-13 2.2E-18 121.6 10.5 106 12-122 343-456 (457)
95 KOG4277 Uncharacterized conser 99.5 1.6E-14 3.5E-19 116.3 4.9 91 158-251 41-134 (468)
96 cd02947 TRX_family TRX family; 99.5 2.6E-13 5.7E-18 93.8 9.5 90 151-246 2-93 (93)
97 PHA02278 thioredoxin-like prot 99.5 1.6E-13 3.5E-18 96.9 8.3 95 21-118 4-100 (103)
98 cd02950 TxlA TRX-like protein 99.5 4.8E-13 1.1E-17 100.4 11.3 105 20-127 9-114 (142)
99 KOG0908 Thioredoxin-like prote 99.5 2.3E-13 5E-18 106.9 9.4 105 144-254 3-111 (288)
100 cd02948 TRX_NDPK TRX domain, T 99.5 2.7E-13 5.8E-18 96.1 9.0 95 19-121 5-101 (102)
101 TIGR01068 thioredoxin thioredo 99.5 2.8E-13 6.1E-18 95.6 9.1 97 20-122 2-100 (101)
102 cd02954 DIM1 Dim1 family; Dim1 99.5 1.6E-13 3.4E-18 97.7 7.4 75 22-101 3-80 (114)
103 cd02965 HyaE HyaE family; HyaE 99.5 4.4E-13 9.6E-18 94.8 9.3 96 15-116 11-109 (111)
104 PF13848 Thioredoxin_6: Thiore 99.5 8.7E-13 1.9E-17 103.7 11.9 115 2-121 65-184 (184)
105 cd02962 TMX2 TMX2 family; comp 99.5 4.4E-13 9.5E-18 101.1 9.6 82 14-100 28-119 (152)
106 cd02953 DsbDgamma DsbD gamma f 99.5 3.7E-13 8E-18 95.8 8.7 96 22-119 2-103 (104)
107 cd02985 TRX_CDSP32 TRX family, 99.4 7.1E-13 1.5E-17 94.1 8.7 97 20-121 2-101 (103)
108 cd02989 Phd_like_TxnDC9 Phosdu 99.4 1.9E-12 4.1E-17 93.3 10.7 100 14-119 4-112 (113)
109 cd02982 PDI_b'_family Protein 99.4 8.5E-13 1.8E-17 93.7 8.5 85 160-248 12-102 (103)
110 cd02951 SoxW SoxW family; SoxW 99.4 1.5E-12 3.4E-17 95.8 9.7 91 157-250 10-120 (125)
111 PTZ00062 glutaredoxin; Provisi 99.4 1.7E-12 3.6E-17 102.4 10.3 94 148-253 5-98 (204)
112 cd02992 PDI_a_QSOX PDIa family 99.4 1.6E-12 3.5E-17 93.9 9.4 99 15-116 2-109 (114)
113 PLN00410 U5 snRNP protein, DIM 99.4 2.3E-12 4.9E-17 95.4 9.6 103 20-126 10-123 (142)
114 cd02984 TRX_PICOT TRX domain, 99.4 1.4E-12 3E-17 91.5 8.1 92 21-119 2-96 (97)
115 cd03072 PDI_b'_ERp44 PDIb' fam 99.4 3E-12 6.4E-17 91.8 9.4 106 16-126 1-111 (111)
116 cd02957 Phd_like Phosducin (Ph 99.4 4.2E-12 9E-17 91.7 9.3 80 14-100 4-87 (113)
117 KOG0907 Thioredoxin [Posttrans 99.3 7E-12 1.5E-16 88.6 9.0 84 30-121 20-104 (106)
118 cd02986 DLP Dim1 family, Dim1- 99.3 1.4E-11 3E-16 87.1 10.0 89 30-123 13-111 (114)
119 cd02952 TRP14_like Human TRX-r 99.3 7.6E-12 1.6E-16 90.2 8.6 92 149-245 9-118 (119)
120 PTZ00051 thioredoxin; Provisio 99.3 7.6E-12 1.6E-16 88.0 8.0 89 20-116 7-96 (98)
121 cd02975 PfPDO_like_N Pyrococcu 99.3 1.2E-11 2.6E-16 89.2 9.1 95 24-124 15-111 (113)
122 cd02949 TRX_NTR TRX domain, no 99.3 1.4E-11 3.1E-16 86.4 9.1 87 27-119 9-96 (97)
123 TIGR00411 redox_disulf_1 small 99.3 1.8E-11 4E-16 83.0 9.2 78 163-248 2-81 (82)
124 cd02987 Phd_like_Phd Phosducin 99.3 3.3E-11 7.3E-16 93.5 10.3 103 12-121 60-173 (175)
125 cd02959 ERp19 Endoplasmic reti 99.3 1.3E-11 2.9E-16 89.4 7.4 93 156-250 15-114 (117)
126 cd02947 TRX_family TRX family; 99.3 3.3E-11 7E-16 83.2 9.0 90 23-119 2-92 (93)
127 TIGR03143 AhpF_homolog putativ 99.2 5.1E-10 1.1E-14 102.6 17.8 183 32-245 366-554 (555)
128 TIGR02187 GlrX_arch Glutaredox 99.2 3.3E-11 7.2E-16 97.1 8.6 90 160-251 19-113 (215)
129 KOG1731 FAD-dependent sulfhydr 99.2 1E-11 2.2E-16 108.6 5.7 118 133-250 30-154 (606)
130 TIGR01295 PedC_BrcD bacterioci 99.2 6.5E-11 1.4E-15 86.4 8.3 103 13-120 5-121 (122)
131 PF01216 Calsequestrin: Calseq 99.2 5.8E-09 1.3E-13 86.4 19.1 208 11-252 31-250 (383)
132 cd02951 SoxW SoxW family; SoxW 99.2 1.5E-10 3.2E-15 85.2 8.7 100 24-125 6-121 (125)
133 cd03073 PDI_b'_ERp72_ERp57 PDI 99.1 3.8E-10 8.3E-15 80.7 8.5 100 16-123 1-111 (111)
134 KOG0908 Thioredoxin-like prote 99.1 3.7E-10 8E-15 89.1 9.0 100 17-124 5-107 (288)
135 TIGR00411 redox_disulf_1 small 99.1 1.2E-09 2.7E-14 73.9 9.9 79 34-122 2-81 (82)
136 TIGR00412 redox_disulf_2 small 99.1 2.2E-10 4.7E-15 76.4 5.7 73 164-245 2-75 (76)
137 cd02988 Phd_like_VIAF Phosduci 99.1 8E-10 1.7E-14 86.9 9.7 103 10-121 78-190 (192)
138 PRK00293 dipZ thiol:disulfide 99.0 1.2E-09 2.5E-14 100.0 10.0 103 143-248 453-569 (571)
139 TIGR02740 TraF-like TraF-like 99.0 3E-09 6.5E-14 88.3 10.9 86 160-250 166-265 (271)
140 cd02983 P5_C P5 family, C-term 99.0 6.4E-09 1.4E-13 76.6 11.5 107 14-127 2-119 (130)
141 PF13098 Thioredoxin_2: Thiore 99.0 3.5E-10 7.5E-15 81.5 4.7 84 158-245 3-112 (112)
142 cd02952 TRP14_like Human TRX-r 99.0 1.1E-09 2.4E-14 79.0 7.0 92 21-119 9-118 (119)
143 PHA02125 thioredoxin-like prot 99.0 1.1E-09 2.5E-14 72.8 6.5 67 164-243 2-71 (75)
144 TIGR02738 TrbB type-F conjugat 99.0 5.4E-09 1.2E-13 79.1 9.5 87 160-248 50-152 (153)
145 cd02955 SSP411 TRX domain, SSP 99.0 5.5E-09 1.2E-13 76.1 9.0 91 156-248 11-118 (124)
146 PRK11509 hydrogenase-1 operon 99.0 7.3E-09 1.6E-13 75.5 9.5 104 146-253 21-128 (132)
147 PRK14018 trifunctional thiored 98.9 1E-08 2.2E-13 91.7 11.4 88 157-247 53-171 (521)
148 PRK11509 hydrogenase-1 operon 98.9 2.5E-08 5.4E-13 72.8 10.0 102 18-125 21-126 (132)
149 PRK03147 thiol-disulfide oxido 98.9 4.5E-08 9.8E-13 76.1 11.9 103 143-248 45-171 (173)
150 TIGR00385 dsbE periplasmic pro 98.8 4.9E-08 1.1E-12 76.0 11.1 87 158-250 61-172 (173)
151 PRK15412 thiol:disulfide inter 98.8 4.4E-08 9.5E-13 77.1 10.6 88 158-251 66-178 (185)
152 PF13905 Thioredoxin_8: Thiore 98.8 2.2E-08 4.7E-13 69.8 7.7 67 160-226 1-94 (95)
153 cd03011 TlpA_like_ScsD_MtbDsbE 98.8 3.4E-08 7.4E-13 72.2 9.1 92 145-243 6-120 (123)
154 cd02973 TRX_GRX_like Thioredox 98.8 1.2E-08 2.7E-13 66.2 5.8 54 164-220 3-58 (67)
155 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 2.9E-08 6.3E-13 68.1 7.2 74 160-242 11-87 (89)
156 PRK15317 alkyl hydroperoxide r 98.8 4.6E-07 1E-11 82.6 17.1 177 32-250 19-199 (517)
157 cd03009 TryX_like_TryX_NRX Try 98.8 3E-08 6.4E-13 73.5 7.6 69 159-227 17-112 (131)
158 cd02964 TryX_like_family Trypa 98.8 3.1E-08 6.8E-13 73.5 7.6 68 159-226 16-111 (132)
159 PF13098 Thioredoxin_2: Thiore 98.8 2.4E-08 5.2E-13 71.8 6.6 89 29-119 3-112 (112)
160 cd03010 TlpA_like_DsbE TlpA-li 98.7 5.6E-08 1.2E-12 71.6 8.3 78 159-241 24-126 (127)
161 KOG0913 Thiol-disulfide isomer 98.7 6E-09 1.3E-13 81.7 2.9 99 143-248 25-125 (248)
162 cd02958 UAS UAS family; UAS is 98.7 1.7E-07 3.6E-12 67.7 10.2 90 157-250 14-112 (114)
163 cd02960 AGR Anterior Gradient 98.7 1.4E-07 3E-12 68.9 9.6 67 157-226 20-91 (130)
164 cd02959 ERp19 Endoplasmic reti 98.7 2.9E-08 6.3E-13 71.9 5.6 97 24-124 12-114 (117)
165 cd03008 TryX_like_RdCVF Trypar 98.7 4.9E-08 1.1E-12 73.1 6.7 69 159-227 24-125 (146)
166 cd02966 TlpA_like_family TlpA- 98.7 9.9E-08 2.1E-12 68.3 8.2 67 160-227 19-110 (116)
167 PLN02919 haloacid dehalogenase 98.7 2.6E-07 5.7E-12 90.3 13.3 89 159-250 419-537 (1057)
168 PRK14018 trifunctional thiored 98.7 2.8E-07 6.1E-12 82.5 12.1 105 13-122 38-172 (521)
169 TIGR03140 AhpF alkyl hydropero 98.7 1.7E-06 3.8E-11 78.8 17.0 179 32-251 19-201 (515)
170 cd02955 SSP411 TRX domain, SSP 98.7 1.4E-07 3E-12 68.8 7.8 98 20-122 4-118 (124)
171 PRK03147 thiol-disulfide oxido 98.6 4.1E-07 9E-12 70.6 10.8 91 30-122 60-171 (173)
172 PRK13728 conjugal transfer pro 98.6 4.8E-07 1E-11 69.9 10.7 84 164-251 73-173 (181)
173 TIGR02740 TraF-like TraF-like 98.6 3.9E-07 8.5E-12 75.7 10.4 89 31-124 166-265 (271)
174 COG4232 Thiol:disulfide interc 98.6 1.3E-07 2.8E-12 84.2 7.8 100 145-248 457-567 (569)
175 TIGR00412 redox_disulf_2 small 98.6 3.2E-07 6.9E-12 61.1 7.9 72 35-119 2-75 (76)
176 PRK00293 dipZ thiol:disulfide 98.6 3E-07 6.5E-12 84.4 10.2 90 30-122 473-569 (571)
177 PF13899 Thioredoxin_7: Thiore 98.6 5.5E-08 1.2E-12 65.8 3.6 65 157-223 14-82 (82)
178 cd02973 TRX_GRX_like Thioredox 98.6 3.5E-07 7.7E-12 59.2 7.0 55 35-95 3-58 (67)
179 cd02967 mauD Methylamine utili 98.6 1.9E-07 4.2E-12 67.2 6.3 40 159-200 20-59 (114)
180 PHA02125 thioredoxin-like prot 98.5 6.7E-07 1.5E-11 59.3 8.1 48 35-92 2-50 (75)
181 cd02958 UAS UAS family; UAS is 98.5 1.4E-06 3E-11 62.9 10.3 94 28-124 14-112 (114)
182 cd03067 PDI_b_PDIR_N PDIb fami 98.5 4.1E-07 9E-12 61.8 6.3 99 20-121 8-110 (112)
183 smart00594 UAS UAS domain. 98.5 1.4E-06 2.9E-11 63.7 9.5 87 157-245 24-121 (122)
184 TIGR02738 TrbB type-F conjugat 98.5 2.6E-06 5.6E-11 64.6 11.2 89 30-122 49-152 (153)
185 KOG0911 Glutaredoxin-related p 98.5 9.7E-07 2.1E-11 69.2 8.8 175 27-225 13-203 (227)
186 PF02114 Phosducin: Phosducin; 98.5 1.2E-06 2.6E-11 72.2 9.3 105 141-250 124-239 (265)
187 PF13905 Thioredoxin_8: Thiore 98.4 1.6E-06 3.5E-11 60.2 8.4 67 31-99 1-92 (95)
188 cd03010 TlpA_like_DsbE TlpA-li 98.4 1.4E-06 3.1E-11 64.0 8.5 79 30-115 24-126 (127)
189 cd03011 TlpA_like_ScsD_MtbDsbE 98.4 1.7E-06 3.6E-11 63.2 8.1 87 23-117 12-120 (123)
190 KOG0914 Thioredoxin-like prote 98.4 3.1E-07 6.7E-12 71.3 4.1 82 15-100 125-216 (265)
191 TIGR00385 dsbE periplasmic pro 98.4 2.6E-06 5.6E-11 66.2 9.3 90 29-123 61-171 (173)
192 KOG0914 Thioredoxin-like prote 98.4 4.7E-07 1E-11 70.3 4.9 88 140-228 122-219 (265)
193 cd03012 TlpA_like_DipZ_like Tl 98.4 3.4E-06 7.3E-11 62.0 9.1 68 159-227 22-118 (126)
194 smart00594 UAS UAS domain. 98.4 5.2E-06 1.1E-10 60.6 9.8 88 29-119 25-121 (122)
195 PRK15412 thiol:disulfide inter 98.4 4.5E-06 9.8E-11 65.6 10.1 91 29-124 66-177 (185)
196 cd02966 TlpA_like_family TlpA- 98.4 3.7E-06 8.1E-11 59.9 8.8 76 30-107 18-115 (116)
197 KOG0913 Thiol-disulfide isomer 98.3 1.9E-07 4.1E-12 73.4 1.6 102 12-122 22-125 (248)
198 PLN02399 phospholipid hydroper 98.3 8.8E-06 1.9E-10 66.0 10.4 90 159-250 98-235 (236)
199 TIGR02661 MauD methylamine deh 98.3 7.3E-06 1.6E-10 64.6 9.4 84 159-247 73-177 (189)
200 PF01216 Calsequestrin: Calseq 98.3 2.2E-06 4.7E-11 71.4 6.3 107 142-253 34-148 (383)
201 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 8.8E-06 1.9E-10 55.8 8.2 71 34-115 15-86 (89)
202 cd02969 PRX_like1 Peroxiredoxi 98.2 1.6E-05 3.4E-10 61.7 10.5 92 159-254 24-157 (171)
203 PF13728 TraF: F plasmid trans 98.2 1.6E-05 3.5E-10 63.8 10.4 84 160-245 120-214 (215)
204 cd02964 TryX_like_family Trypa 98.2 1E-05 2.2E-10 60.0 8.6 68 30-99 16-109 (132)
205 PF08534 Redoxin: Redoxin; In 98.2 6.7E-06 1.4E-10 62.0 7.8 77 159-237 27-136 (146)
206 COG0526 TrxA Thiol-disulfide i 98.2 5.9E-06 1.3E-10 59.0 7.3 82 160-245 32-120 (127)
207 PTZ00056 glutathione peroxidas 98.2 6E-06 1.3E-10 65.6 7.5 44 159-203 38-81 (199)
208 cd03009 TryX_like_TryX_NRX Try 98.2 1.1E-05 2.5E-10 59.5 8.4 69 30-100 17-110 (131)
209 PF13192 Thioredoxin_3: Thiore 98.2 1.1E-05 2.3E-10 53.6 7.2 71 166-246 4-76 (76)
210 PLN02412 probable glutathione 98.2 1E-05 2.3E-10 62.4 7.9 91 159-251 28-166 (167)
211 PLN02919 haloacid dehalogenase 98.1 1.5E-05 3.2E-10 78.3 10.5 93 30-124 419-537 (1057)
212 PF07912 ERp29_N: ERp29, N-ter 98.1 6.4E-05 1.4E-09 53.5 10.7 105 143-251 5-121 (126)
213 cd02967 mauD Methylamine utili 98.1 5.3E-06 1.2E-10 59.6 5.5 62 30-92 20-82 (114)
214 cd03008 TryX_like_RdCVF Trypar 98.1 1.3E-05 2.9E-10 60.0 7.7 68 30-99 24-122 (146)
215 PF07912 ERp29_N: ERp29, N-ter 98.1 9.7E-05 2.1E-09 52.5 11.3 103 16-122 6-118 (126)
216 TIGR02739 TraF type-F conjugat 98.1 4.4E-05 9.5E-10 62.5 10.7 89 160-250 150-249 (256)
217 TIGR02200 GlrX_actino Glutared 98.1 9.9E-06 2.1E-10 53.7 5.8 68 164-246 2-76 (77)
218 KOG1672 ATP binding protein [P 98.1 2.3E-05 5E-10 60.0 8.2 110 5-121 58-176 (211)
219 TIGR02196 GlrX_YruB Glutaredox 98.1 1.1E-05 2.5E-10 52.8 5.5 67 164-246 2-74 (74)
220 cd01659 TRX_superfamily Thiore 98.0 2E-05 4.3E-10 49.5 6.5 58 164-224 1-63 (69)
221 TIGR02540 gpx7 putative glutat 98.0 3E-05 6.5E-10 59.0 8.2 87 160-248 22-152 (153)
222 PF02114 Phosducin: Phosducin; 98.0 3.9E-05 8.5E-10 63.4 9.4 104 12-122 123-237 (265)
223 PRK13703 conjugal pilus assemb 98.0 7.3E-05 1.6E-09 60.9 10.6 89 160-250 143-242 (248)
224 PRK13728 conjugal transfer pro 98.0 8.1E-05 1.7E-09 57.6 10.1 86 35-124 73-172 (181)
225 cd03012 TlpA_like_DipZ_like Tl 98.0 5.6E-05 1.2E-09 55.4 8.9 77 30-108 22-124 (126)
226 PTZ00256 glutathione peroxidas 98.0 0.00013 2.9E-09 57.1 11.2 42 160-202 40-82 (183)
227 COG2143 Thioredoxin-related pr 98.0 0.00013 2.9E-09 53.9 9.9 87 157-246 39-146 (182)
228 KOG2603 Oligosaccharyltransfer 97.9 9.1E-05 2E-09 61.0 9.0 114 141-254 39-171 (331)
229 PTZ00056 glutathione peroxidas 97.9 0.00018 3.9E-09 57.2 10.1 93 30-124 38-179 (199)
230 PLN02399 phospholipid hydroper 97.9 0.00022 4.7E-09 57.9 10.5 93 30-124 98-235 (236)
231 cd02969 PRX_like1 Peroxiredoxi 97.9 0.00032 6.9E-09 54.3 11.2 95 30-126 24-155 (171)
232 PRK11200 grxA glutaredoxin 1; 97.8 8.7E-05 1.9E-09 50.4 7.1 75 163-250 2-84 (85)
233 PF06110 DUF953: Eukaryotic pr 97.8 8.9E-05 1.9E-09 53.3 7.3 90 150-246 6-118 (119)
234 cd02960 AGR Anterior Gradient 97.8 9.1E-05 2E-09 54.2 7.0 76 27-108 19-98 (130)
235 PF13899 Thioredoxin_7: Thiore 97.8 3.7E-05 8E-10 51.8 4.7 65 27-97 13-81 (82)
236 TIGR01626 ytfJ_HI0045 conserve 97.8 0.00016 3.5E-09 56.3 8.7 83 160-243 59-174 (184)
237 cd02981 PDI_b_family Protein D 97.8 0.00018 4E-09 50.0 8.3 86 24-121 10-96 (97)
238 KOG2501 Thioredoxin, nucleored 97.8 3.4E-05 7.4E-10 57.6 4.5 67 159-225 32-126 (157)
239 cd03072 PDI_b'_ERp44 PDIb' fam 97.8 0.00025 5.4E-09 50.8 8.5 101 144-250 1-109 (111)
240 cd02981 PDI_b_family Protein D 97.8 0.00016 3.4E-09 50.3 7.4 86 152-247 10-96 (97)
241 PF08534 Redoxin: Redoxin; In 97.7 0.00018 4E-09 54.0 8.0 81 29-111 26-136 (146)
242 KOG2603 Oligosaccharyltransfer 97.7 0.00054 1.2E-08 56.6 11.0 120 2-126 28-169 (331)
243 KOG1672 ATP binding protein [P 97.7 9.8E-05 2.1E-09 56.7 6.3 85 144-234 68-155 (211)
244 PF13728 TraF: F plasmid trans 97.7 0.00032 7E-09 56.3 9.4 82 31-117 120-212 (215)
245 cd02983 P5_C P5 family, C-term 97.7 0.00088 1.9E-08 49.3 10.9 106 144-253 4-119 (130)
246 cd00340 GSH_Peroxidase Glutath 97.7 9.1E-05 2E-09 56.2 5.8 42 160-203 22-63 (152)
247 cd02991 UAS_ETEA UAS family, E 97.7 0.00079 1.7E-08 48.5 10.3 92 29-124 15-114 (116)
248 PF14595 Thioredoxin_9: Thiore 97.7 3.4E-05 7.4E-10 56.7 3.2 73 149-224 30-107 (129)
249 cd02991 UAS_ETEA UAS family, E 97.7 0.00031 6.8E-09 50.6 7.9 91 157-250 14-114 (116)
250 TIGR02661 MauD methylamine deh 97.6 0.00072 1.6E-08 53.3 10.3 92 30-125 73-181 (189)
251 cd03017 PRX_BCP Peroxiredoxin 97.6 0.00017 3.6E-09 53.8 6.3 82 160-243 23-137 (140)
252 KOG3425 Uncharacterized conser 97.6 0.00059 1.3E-08 48.2 8.2 72 150-223 13-104 (128)
253 PLN02412 probable glutathione 97.6 0.00062 1.3E-08 52.6 8.9 42 30-71 28-71 (167)
254 COG4232 Thiol:disulfide interc 97.6 0.00027 5.9E-09 63.5 7.7 103 17-122 457-567 (569)
255 cd01659 TRX_superfamily Thiore 97.6 0.00045 9.9E-09 43.0 6.9 59 35-99 1-63 (69)
256 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00015 3.2E-09 48.9 4.6 56 164-225 1-63 (84)
257 COG2143 Thioredoxin-related pr 97.5 0.0017 3.8E-08 48.2 10.2 96 28-125 39-151 (182)
258 TIGR02540 gpx7 putative glutat 97.5 0.0013 2.9E-08 49.9 10.0 41 30-70 21-63 (153)
259 TIGR02739 TraF type-F conjugat 97.5 0.001 2.2E-08 54.6 9.7 91 32-124 151-249 (256)
260 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.00074 1.6E-08 48.3 7.9 95 147-248 4-110 (111)
261 COG0526 TrxA Thiol-disulfide i 97.5 0.00081 1.8E-08 47.6 8.0 64 31-99 32-99 (127)
262 PRK13703 conjugal pilus assemb 97.4 0.0017 3.7E-08 53.0 10.0 91 33-125 145-243 (248)
263 TIGR02196 GlrX_YruB Glutaredox 97.4 0.0011 2.4E-08 43.1 7.4 70 35-119 2-73 (74)
264 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.0011 2.4E-08 45.3 7.1 96 146-247 5-110 (112)
265 PF00578 AhpC-TSA: AhpC/TSA fa 97.3 0.0013 2.8E-08 47.7 7.8 45 30-74 24-71 (124)
266 PF13192 Thioredoxin_3: Thiore 97.3 0.0024 5.1E-08 42.3 8.1 72 36-120 3-76 (76)
267 cd00340 GSH_Peroxidase Glutath 97.3 0.0019 4.1E-08 49.0 8.4 41 30-71 21-63 (152)
268 PF00578 AhpC-TSA: AhpC/TSA fa 97.2 0.0014 3.1E-08 47.5 6.8 68 159-227 24-121 (124)
269 cd02968 SCO SCO (an acronym fo 97.2 0.0011 2.3E-08 49.5 6.0 46 159-204 21-69 (142)
270 KOG3170 Conserved phosducin-li 97.2 0.0067 1.5E-07 47.0 9.8 105 140-248 89-200 (240)
271 KOG2501 Thioredoxin, nucleored 97.1 0.0017 3.7E-08 48.6 6.4 68 30-99 32-125 (157)
272 KOG0911 Glutaredoxin-related p 97.1 0.00025 5.5E-09 55.9 2.0 76 158-238 15-92 (227)
273 cd02976 NrdH NrdH-redoxin (Nrd 97.1 0.0012 2.6E-08 42.8 5.1 65 164-244 2-72 (73)
274 cd02970 PRX_like2 Peroxiredoxi 97.1 0.0019 4.1E-08 48.4 6.9 45 160-205 23-68 (149)
275 TIGR01626 ytfJ_HI0045 conserve 97.1 0.0054 1.2E-07 47.8 8.9 87 30-120 58-177 (184)
276 PF03190 Thioredox_DsbH: Prote 97.1 0.001 2.2E-08 50.5 4.7 75 148-225 26-113 (163)
277 TIGR02183 GRXA Glutaredoxin, G 97.1 0.0019 4.2E-08 43.8 5.7 75 164-251 2-84 (86)
278 KOG3414 Component of the U4/U6 97.0 0.013 2.8E-07 41.9 9.6 93 29-126 21-123 (142)
279 PRK09437 bcp thioredoxin-depen 97.0 0.0027 5.9E-08 48.1 6.8 45 159-204 29-74 (154)
280 cd03069 PDI_b_ERp57 PDIb famil 97.0 0.0056 1.2E-07 43.2 7.7 89 20-121 7-102 (104)
281 PRK10877 protein disulfide iso 97.0 0.011 2.4E-07 48.1 10.5 79 159-248 106-230 (232)
282 TIGR02190 GlrX-dom Glutaredoxi 96.9 0.0026 5.5E-08 42.4 5.4 56 160-225 6-66 (79)
283 TIGR03143 AhpF_homolog putativ 96.9 0.01 2.3E-07 54.8 11.2 98 152-252 357-457 (555)
284 cd03018 PRX_AhpE_like Peroxire 96.9 0.0025 5.4E-08 47.9 6.0 43 161-204 29-72 (149)
285 PF05768 DUF836: Glutaredoxin- 96.9 0.0026 5.6E-08 42.7 5.2 78 164-246 2-81 (81)
286 cd03015 PRX_Typ2cys Peroxiredo 96.9 0.013 2.7E-07 45.5 9.8 91 30-122 28-156 (173)
287 KOG3171 Conserved phosducin-li 96.9 0.0044 9.6E-08 48.5 6.9 103 143-248 139-250 (273)
288 PRK10329 glutaredoxin-like pro 96.9 0.0057 1.2E-07 41.0 6.6 71 164-250 3-78 (81)
289 cd03066 PDI_b_Calsequestrin_mi 96.8 0.014 3E-07 40.9 8.7 91 20-122 7-100 (102)
290 PRK10606 btuE putative glutath 96.8 0.0025 5.4E-08 49.8 5.2 43 160-204 25-67 (183)
291 PF02966 DIM1: Mitosis protein 96.8 0.037 7.9E-07 40.1 10.6 92 29-125 18-119 (133)
292 PRK10606 btuE putative glutath 96.8 0.035 7.5E-07 43.4 11.5 60 30-92 24-94 (183)
293 PF07449 HyaE: Hydrogenase-1 e 96.8 0.0021 4.5E-08 45.3 4.1 82 15-101 10-94 (107)
294 PF03190 Thioredox_DsbH: Prote 96.8 0.0045 9.7E-08 47.0 6.1 97 3-104 7-117 (163)
295 KOG3414 Component of the U4/U6 96.7 0.015 3.2E-07 41.6 8.0 95 150-247 12-118 (142)
296 PF00462 Glutaredoxin: Glutare 96.7 0.0022 4.8E-08 40.2 3.6 49 164-220 1-55 (60)
297 TIGR02200 GlrX_actino Glutared 96.7 0.0097 2.1E-07 39.0 6.8 68 35-119 2-75 (77)
298 PF11009 DUF2847: Protein of u 96.7 0.0047 1E-07 43.3 5.2 90 149-241 7-104 (105)
299 TIGR03137 AhpC peroxiredoxin. 96.7 0.021 4.5E-07 44.9 9.6 91 30-122 30-155 (187)
300 PTZ00256 glutathione peroxidas 96.7 0.028 6.1E-07 44.0 10.3 42 30-71 39-83 (183)
301 cd03015 PRX_Typ2cys Peroxiredo 96.7 0.0039 8.5E-08 48.3 5.3 87 160-248 29-156 (173)
302 TIGR03137 AhpC peroxiredoxin. 96.6 0.0039 8.4E-08 49.0 5.2 86 160-246 31-153 (187)
303 PRK00522 tpx lipid hydroperoxi 96.6 0.0047 1E-07 47.6 5.6 42 160-204 44-86 (167)
304 cd03014 PRX_Atyp2cys Peroxired 96.6 0.0049 1.1E-07 46.0 5.5 41 160-203 26-67 (143)
305 cd03017 PRX_BCP Peroxiredoxin 96.6 0.015 3.2E-07 43.1 8.0 43 31-73 23-68 (140)
306 cd03020 DsbA_DsbC_DsbG DsbA fa 96.6 0.017 3.7E-07 45.7 8.8 26 159-184 76-101 (197)
307 PRK15317 alkyl hydroperoxide r 96.6 0.013 2.9E-07 53.6 9.2 110 2-122 84-197 (517)
308 cd03074 PDI_b'_Calsequestrin_C 96.6 0.046 1E-06 38.0 9.4 105 15-123 2-120 (120)
309 cd02971 PRX_family Peroxiredox 96.6 0.0049 1.1E-07 45.7 5.3 45 159-204 21-66 (140)
310 TIGR02180 GRX_euk Glutaredoxin 96.6 0.0066 1.4E-07 40.6 5.4 55 35-92 1-58 (84)
311 cd03029 GRX_hybridPRX5 Glutare 96.6 0.0085 1.8E-07 39.0 5.6 64 164-245 3-71 (72)
312 cd03014 PRX_Atyp2cys Peroxired 96.6 0.0084 1.8E-07 44.7 6.4 61 30-92 25-87 (143)
313 cd02066 GRX_family Glutaredoxi 96.5 0.0059 1.3E-07 39.2 4.4 52 164-225 2-59 (72)
314 PRK13190 putative peroxiredoxi 96.4 0.02 4.4E-07 45.6 8.1 90 160-250 27-155 (202)
315 PRK00522 tpx lipid hydroperoxi 96.3 0.013 2.8E-07 45.2 6.3 58 30-88 43-102 (167)
316 cd03419 GRX_GRXh_1_2_like Glut 96.2 0.0078 1.7E-07 40.1 4.1 54 164-225 2-62 (82)
317 PRK10382 alkyl hydroperoxide r 96.2 0.091 2E-06 41.3 10.3 93 30-123 30-156 (187)
318 TIGR02189 GlrX-like_plant Glut 96.2 0.0094 2E-07 41.6 4.3 53 163-225 9-70 (99)
319 cd03066 PDI_b_Calsequestrin_mi 96.1 0.044 9.4E-07 38.4 7.4 95 145-248 3-100 (102)
320 TIGR03140 AhpF alkyl hydropero 96.0 0.049 1.1E-06 49.9 9.6 110 2-122 85-198 (515)
321 cd02970 PRX_like2 Peroxiredoxi 96.0 0.034 7.3E-07 41.6 7.2 55 31-85 23-80 (149)
322 KOG3170 Conserved phosducin-li 96.0 0.062 1.3E-06 41.8 8.3 109 4-121 81-199 (240)
323 PHA03050 glutaredoxin; Provisi 96.0 0.016 3.5E-07 41.1 4.9 56 163-225 14-78 (108)
324 TIGR02194 GlrX_NrdH Glutaredox 96.0 0.014 3E-07 38.1 4.2 64 165-243 2-70 (72)
325 TIGR00365 monothiol glutaredox 96.0 0.014 3.1E-07 40.5 4.5 56 160-225 11-76 (97)
326 TIGR02181 GRX_bact Glutaredoxi 95.9 0.0086 1.9E-07 39.8 3.2 52 164-225 1-58 (79)
327 cd03027 GRX_DEP Glutaredoxin ( 95.9 0.013 2.9E-07 38.2 4.1 52 164-225 3-60 (73)
328 cd03028 GRX_PICOT_like Glutare 95.9 0.015 3.2E-07 39.8 4.4 56 160-225 7-72 (90)
329 PRK15000 peroxidase; Provision 95.9 0.075 1.6E-06 42.2 8.8 92 30-123 33-162 (200)
330 cd03418 GRX_GRXb_1_3_like Glut 95.8 0.016 3.5E-07 37.9 4.2 52 164-225 2-60 (75)
331 PRK10382 alkyl hydroperoxide r 95.8 0.022 4.7E-07 44.8 5.4 87 160-247 31-154 (187)
332 PRK10824 glutaredoxin-4; Provi 95.8 0.012 2.5E-07 42.2 3.5 57 160-226 14-80 (115)
333 PF02966 DIM1: Mitosis protein 95.8 0.13 2.8E-06 37.3 8.8 94 150-247 9-115 (133)
334 cd03069 PDI_b_ERp57 PDIb famil 95.8 0.043 9.4E-07 38.6 6.5 90 150-248 9-103 (104)
335 PF14595 Thioredoxin_9: Thiore 95.8 0.042 9E-07 40.4 6.5 61 33-99 43-107 (129)
336 PRK11200 grxA glutaredoxin 1; 95.6 0.047 1E-06 36.8 5.9 78 34-123 2-83 (85)
337 PF06110 DUF953: Eukaryotic pr 95.6 0.072 1.6E-06 38.4 6.9 69 29-99 17-99 (119)
338 PRK11657 dsbG disulfide isomer 95.6 0.18 4E-06 41.6 10.2 82 159-246 116-249 (251)
339 PF07449 HyaE: Hydrogenase-1 e 95.5 0.017 3.7E-07 40.7 3.4 89 143-236 10-102 (107)
340 PRK09437 bcp thioredoxin-depen 95.4 0.17 3.7E-06 38.1 9.1 55 30-84 29-86 (154)
341 cd03018 PRX_AhpE_like Peroxire 95.4 0.049 1.1E-06 40.8 5.9 54 32-85 29-85 (149)
342 PF11009 DUF2847: Protein of u 95.4 0.066 1.4E-06 37.5 5.9 95 20-115 6-104 (105)
343 PRK15000 peroxidase; Provision 95.4 0.039 8.4E-07 43.9 5.4 87 159-247 33-160 (200)
344 cd03068 PDI_b_ERp72 PDIb famil 95.4 0.13 2.9E-06 36.4 7.7 90 20-121 7-106 (107)
345 PTZ00137 2-Cys peroxiredoxin; 95.2 0.27 5.9E-06 40.7 10.1 92 30-123 97-225 (261)
346 PRK10638 glutaredoxin 3; Provi 95.0 0.039 8.4E-07 37.0 3.9 48 164-219 4-57 (83)
347 cd02976 NrdH NrdH-redoxin (Nrd 95.0 0.12 2.6E-06 33.1 6.2 69 35-118 2-72 (73)
348 KOG3425 Uncharacterized conser 95.0 0.11 2.3E-06 37.0 6.0 67 28-95 22-102 (128)
349 cd03023 DsbA_Com1_like DsbA fa 95.0 0.074 1.6E-06 39.8 5.8 41 159-202 4-44 (154)
350 PRK13190 putative peroxiredoxi 94.9 0.26 5.6E-06 39.2 8.9 92 31-124 27-155 (202)
351 cd03074 PDI_b'_Calsequestrin_C 94.8 0.85 1.8E-05 31.9 9.8 105 144-249 3-120 (120)
352 cd03016 PRX_1cys Peroxiredoxin 94.8 0.27 5.8E-06 39.2 8.8 87 35-122 30-153 (203)
353 cd02971 PRX_family Peroxiredox 94.7 0.1 2.2E-06 38.5 5.9 44 30-73 21-67 (140)
354 COG0695 GrxC Glutaredoxin and 94.7 0.074 1.6E-06 35.5 4.5 48 164-219 3-58 (80)
355 PTZ00137 2-Cys peroxiredoxin; 94.6 0.084 1.8E-06 43.6 5.6 89 159-248 97-224 (261)
356 PRK10877 protein disulfide iso 94.5 0.52 1.1E-05 38.4 10.0 82 30-122 106-230 (232)
357 cd03016 PRX_1cys Peroxiredoxin 94.3 0.08 1.7E-06 42.2 4.7 42 162-204 28-69 (203)
358 PF13462 Thioredoxin_4: Thiore 94.2 0.21 4.6E-06 37.8 6.7 45 159-203 11-55 (162)
359 cd02968 SCO SCO (an acronym fo 94.1 0.11 2.4E-06 38.5 4.9 42 30-71 21-68 (142)
360 PRK13191 putative peroxiredoxi 94.1 0.1 2.3E-06 41.9 5.1 88 160-248 33-160 (215)
361 cd02974 AhpF_NTD_N Alkyl hydro 94.0 1.3 2.9E-05 30.4 10.4 74 160-247 18-92 (94)
362 PTZ00253 tryparedoxin peroxida 93.9 0.13 2.8E-06 40.8 5.3 44 160-204 36-80 (199)
363 KOG1752 Glutaredoxin and relat 93.9 0.12 2.7E-06 36.2 4.4 55 163-225 15-76 (104)
364 PRK13599 putative peroxiredoxi 93.9 0.11 2.4E-06 41.8 4.7 88 160-248 28-155 (215)
365 cd03071 PDI_b'_NRX PDIb' famil 93.8 0.56 1.2E-05 32.7 7.3 87 33-123 16-115 (116)
366 PRK11657 dsbG disulfide isomer 93.8 0.86 1.9E-05 37.6 9.9 40 78-120 210-249 (251)
367 PTZ00253 tryparedoxin peroxida 93.7 0.77 1.7E-05 36.4 9.4 90 31-122 36-163 (199)
368 cd03020 DsbA_DsbC_DsbG DsbA fa 93.6 0.69 1.5E-05 36.5 8.9 36 77-119 162-197 (197)
369 PF05768 DUF836: Glutaredoxin- 93.5 0.32 7E-06 32.4 5.9 78 35-120 2-81 (81)
370 cd03019 DsbA_DsbA DsbA family, 93.5 0.17 3.7E-06 39.0 5.1 43 159-203 14-56 (178)
371 PRK13189 peroxiredoxin; Provis 93.0 0.18 4E-06 40.7 4.7 88 160-248 35-162 (222)
372 TIGR02183 GRXA Glutaredoxin, G 92.9 0.42 9E-06 32.2 5.7 77 35-123 2-82 (86)
373 PRK13599 putative peroxiredoxi 92.7 1.3 2.8E-05 35.6 9.2 86 35-122 33-155 (215)
374 cd02972 DsbA_family DsbA famil 92.5 0.31 6.8E-06 32.9 4.8 39 164-204 1-39 (98)
375 PRK12759 bifunctional gluaredo 92.4 0.22 4.8E-06 44.2 4.9 49 164-220 4-66 (410)
376 PRK13189 peroxiredoxin; Provis 92.4 1 2.3E-05 36.4 8.4 92 30-123 34-163 (222)
377 PRK13191 putative peroxiredoxi 92.4 1.3 2.8E-05 35.7 8.8 90 31-122 33-160 (215)
378 cd03419 GRX_GRXh_1_2_like Glut 92.3 0.46 1E-05 31.3 5.3 53 35-92 2-57 (82)
379 TIGR02194 GlrX_NrdH Glutaredox 92.2 0.84 1.8E-05 29.5 6.3 68 36-117 2-70 (72)
380 PF00462 Glutaredoxin: Glutare 92.1 0.67 1.4E-05 28.6 5.5 51 35-92 1-53 (60)
381 PRK10329 glutaredoxin-like pro 91.9 1.3 2.9E-05 29.4 7.1 74 35-123 3-77 (81)
382 TIGR02190 GlrX-dom Glutaredoxi 91.7 0.64 1.4E-05 30.7 5.4 53 33-92 8-61 (79)
383 COG3634 AhpF Alkyl hydroperoxi 91.6 7.9 0.00017 33.5 12.7 168 37-247 24-196 (520)
384 cd03068 PDI_b_ERp72 PDIb famil 91.6 1.3 2.8E-05 31.3 7.2 97 145-248 3-107 (107)
385 cd02066 GRX_family Glutaredoxi 91.6 0.56 1.2E-05 29.6 5.0 51 35-92 2-54 (72)
386 KOG2640 Thioredoxin [Function 90.4 0.19 4.1E-06 42.0 2.1 87 31-124 76-163 (319)
387 cd02972 DsbA_family DsbA famil 90.3 1.1 2.5E-05 30.0 5.8 59 36-96 2-90 (98)
388 KOG3171 Conserved phosducin-li 90.3 1.1 2.4E-05 35.5 6.1 80 14-100 138-222 (273)
389 cd03027 GRX_DEP Glutaredoxin ( 89.0 2.3 5E-05 27.3 6.2 51 35-92 3-55 (73)
390 PF00837 T4_deiodinase: Iodoth 88.5 2.7 5.8E-05 34.1 7.2 62 140-204 80-144 (237)
391 KOG2640 Thioredoxin [Function 88.3 0.2 4.4E-06 41.8 0.9 85 160-250 76-163 (319)
392 PF13743 Thioredoxin_5: Thiore 87.9 3.1 6.6E-05 32.3 7.3 32 37-68 2-34 (176)
393 TIGR02654 circ_KaiB circadian 87.6 4.1 8.9E-05 27.5 6.6 71 34-111 5-77 (87)
394 cd03029 GRX_hybridPRX5 Glutare 87.3 2.8 6E-05 26.9 5.8 51 35-92 3-54 (72)
395 cd02977 ArsC_family Arsenate R 87.2 0.88 1.9E-05 31.9 3.5 76 165-248 2-86 (105)
396 PRK10954 periplasmic protein d 87.0 1.1 2.3E-05 35.9 4.3 41 160-202 37-80 (207)
397 PRK09301 circadian clock prote 86.7 4.7 0.0001 28.1 6.7 72 33-111 7-80 (103)
398 cd02974 AhpF_NTD_N Alkyl hydro 85.8 9.2 0.0002 26.3 8.8 74 32-122 19-93 (94)
399 cd03418 GRX_GRXb_1_3_like Glut 85.7 4.2 9.1E-05 26.1 6.0 51 35-92 2-55 (75)
400 cd03040 GST_N_mPGES2 GST_N fam 85.1 4.5 9.8E-05 26.1 6.0 73 164-250 2-77 (77)
401 COG0278 Glutaredoxin-related p 84.9 2.5 5.5E-05 29.2 4.6 47 169-225 27-80 (105)
402 TIGR02181 GRX_bact Glutaredoxi 84.5 3.2 7E-05 27.1 5.1 50 36-92 2-53 (79)
403 cd03031 GRX_GRX_like Glutaredo 84.5 1.8 3.9E-05 32.5 4.2 34 164-205 2-41 (147)
404 PHA03075 glutaredoxin-like pro 84.1 2.5 5.3E-05 30.0 4.4 29 161-189 2-30 (123)
405 cd03035 ArsC_Yffb Arsenate Red 84.0 1.7 3.7E-05 30.5 3.7 34 164-205 1-34 (105)
406 cd03019 DsbA_DsbA DsbA family, 83.7 2.3 5.1E-05 32.5 4.8 42 30-71 14-56 (178)
407 TIGR02189 GlrX-like_plant Glut 83.1 3.9 8.4E-05 28.3 5.2 52 34-92 9-65 (99)
408 cd03023 DsbA_Com1_like DsbA fa 83.0 3.1 6.6E-05 30.8 5.0 38 32-70 6-44 (154)
409 cd03036 ArsC_like Arsenate Red 82.7 2.1 4.6E-05 30.4 3.8 76 165-248 2-87 (111)
410 PF13462 Thioredoxin_4: Thiore 82.0 4.8 0.0001 30.2 5.8 42 32-73 13-57 (162)
411 PRK01655 spxA transcriptional 81.9 2.5 5.5E-05 31.0 4.1 34 164-205 2-35 (131)
412 PF13743 Thioredoxin_5: Thiore 80.7 4.1 8.8E-05 31.6 5.0 38 166-205 2-39 (176)
413 PHA03050 glutaredoxin; Provisi 80.0 4.5 9.7E-05 28.6 4.7 55 34-92 14-73 (108)
414 PRK12559 transcriptional regul 79.9 3.5 7.7E-05 30.3 4.2 34 164-205 2-35 (131)
415 TIGR01617 arsC_related transcr 79.8 3.1 6.8E-05 29.8 3.9 33 165-205 2-34 (117)
416 cd03032 ArsC_Spx Arsenate Redu 78.5 4.7 0.0001 28.8 4.5 34 164-205 2-35 (115)
417 cd03070 PDI_b_ERp44 PDIb famil 78.2 19 0.00041 24.6 8.8 73 156-237 13-85 (91)
418 cd02978 KaiB_like KaiB-like fa 78.1 11 0.00025 24.4 5.6 58 35-96 4-63 (72)
419 COG0695 GrxC Glutaredoxin and 76.6 11 0.00023 25.0 5.4 51 35-92 3-57 (80)
420 COG1225 Bcp Peroxiredoxin [Pos 76.1 8.8 0.00019 29.1 5.4 61 30-92 29-92 (157)
421 PF04592 SelP_N: Selenoprotein 75.9 10 0.00022 30.7 6.0 61 143-205 11-73 (238)
422 PF13778 DUF4174: Domain of un 75.9 26 0.00057 25.1 8.7 87 35-122 12-111 (118)
423 PRK10638 glutaredoxin 3; Provi 73.6 14 0.0003 24.4 5.5 51 35-92 4-56 (83)
424 PRK13344 spxA transcriptional 73.1 7.6 0.00017 28.5 4.4 34 164-205 2-35 (132)
425 cd03041 GST_N_2GST_N GST_N fam 72.0 14 0.0003 23.9 5.1 69 164-248 2-76 (77)
426 PF02630 SCO1-SenC: SCO1/SenC; 71.3 14 0.0003 28.5 5.8 61 144-205 37-99 (174)
427 cd03013 PRX5_like Peroxiredoxi 70.6 9.1 0.0002 28.9 4.5 45 160-205 29-76 (155)
428 COG1393 ArsC Arsenate reductas 67.9 8 0.00017 27.8 3.5 23 163-185 2-24 (117)
429 COG4545 Glutaredoxin-related p 67.9 5.4 0.00012 26.0 2.2 32 165-204 5-36 (85)
430 PF07689 KaiB: KaiB domain; I 67.8 6 0.00013 26.4 2.6 52 38-93 3-56 (82)
431 TIGR00365 monothiol glutaredox 66.0 26 0.00055 24.1 5.6 45 41-92 25-71 (97)
432 TIGR02742 TrbC_Ftype type-F co 64.7 21 0.00046 26.2 5.2 51 198-248 55-114 (130)
433 PRK10954 periplasmic protein d 64.0 11 0.00023 30.0 3.9 40 31-70 37-80 (207)
434 cd03033 ArsC_15kD Arsenate Red 64.0 10 0.00022 27.0 3.4 34 164-205 2-35 (113)
435 cd03034 ArsC_ArsC Arsenate Red 62.5 12 0.00027 26.4 3.6 34 165-206 2-35 (112)
436 cd03028 GRX_PICOT_like Glutare 62.5 29 0.00063 23.3 5.3 45 41-92 21-67 (90)
437 PF13417 GST_N_3: Glutathione 62.1 39 0.00084 21.6 6.0 70 166-251 1-73 (75)
438 TIGR00014 arsC arsenate reduct 62.0 13 0.00028 26.5 3.6 34 165-206 2-35 (114)
439 cd03013 PRX5_like Peroxiredoxi 61.3 22 0.00047 26.8 5.0 61 31-92 29-95 (155)
440 KOG2507 Ubiquitin regulatory p 61.1 78 0.0017 28.2 8.6 88 159-249 17-111 (506)
441 COG3019 Predicted metal-bindin 59.6 70 0.0015 23.8 7.0 74 33-122 26-103 (149)
442 cd02978 KaiB_like KaiB-like fa 58.8 46 0.001 21.6 5.3 58 163-221 3-62 (72)
443 COG1225 Bcp Peroxiredoxin [Pos 58.5 30 0.00065 26.3 5.2 44 160-204 30-74 (157)
444 PF09673 TrbC_Ftype: Type-F co 58.2 18 0.0004 25.7 3.9 44 178-223 37-80 (113)
445 PF09822 ABC_transp_aux: ABC-t 58.2 1.1E+02 0.0023 25.4 9.7 68 17-87 10-88 (271)
446 PF01323 DSBA: DSBA-like thior 56.8 36 0.00078 26.2 5.8 40 163-203 1-40 (193)
447 PF06053 DUF929: Domain of unk 56.3 67 0.0015 26.5 7.2 45 143-191 45-89 (249)
448 cd03025 DsbA_FrnE_like DsbA fa 55.4 18 0.00039 28.0 3.8 27 164-190 3-29 (193)
449 cd00570 GST_N_family Glutathio 54.9 45 0.00097 20.0 5.1 50 165-220 2-55 (71)
450 PF08806 Sep15_SelM: Sep15/Sel 54.7 28 0.0006 23.0 4.0 34 215-249 42-76 (78)
451 COG1999 Uncharacterized protei 54.7 36 0.00078 27.2 5.4 47 159-205 66-115 (207)
452 cd02990 UAS_FAF1 UAS family, F 53.2 91 0.002 23.1 10.0 94 29-123 19-133 (136)
453 COG2761 FrnE Predicted dithiol 51.9 38 0.00083 27.4 5.1 43 77-126 174-216 (225)
454 cd02990 UAS_FAF1 UAS family, F 49.0 1.1E+02 0.0023 22.7 10.2 89 159-250 20-134 (136)
455 PF00837 T4_deiodinase: Iodoth 48.9 24 0.00051 28.8 3.5 59 15-73 83-145 (237)
456 COG2761 FrnE Predicted dithiol 48.6 34 0.00073 27.7 4.3 40 209-254 179-218 (225)
457 cd03060 GST_N_Omega_like GST_N 48.3 23 0.00051 22.3 2.9 49 165-219 2-53 (71)
458 PRK12759 bifunctional gluaredo 47.6 50 0.0011 29.4 5.7 53 35-95 4-66 (410)
459 PF07700 HNOB: Heme NO binding 46.9 68 0.0015 24.6 5.7 54 19-72 115-170 (171)
460 PRK10026 arsenate reductase; P 46.7 28 0.00061 25.9 3.4 22 164-185 4-25 (141)
461 PRK10853 putative reductase; P 46.3 26 0.00057 25.1 3.1 34 164-205 2-35 (118)
462 COG1331 Highly conserved prote 45.9 1.1E+02 0.0023 29.2 7.6 80 143-225 27-119 (667)
463 TIGR01616 nitro_assoc nitrogen 43.3 38 0.00082 24.7 3.6 34 164-205 3-36 (126)
464 COG1999 Uncharacterized protei 43.3 1.5E+02 0.0033 23.6 7.3 60 30-92 66-134 (207)
465 COG3019 Predicted metal-bindin 42.7 55 0.0012 24.3 4.2 73 162-249 26-104 (149)
466 PF03960 ArsC: ArsC family; I 41.0 51 0.0011 23.1 3.9 33 167-207 1-33 (110)
467 COG3531 Predicted protein-disu 40.5 69 0.0015 25.3 4.7 43 77-123 164-209 (212)
468 PF01323 DSBA: DSBA-like thior 40.3 47 0.001 25.5 4.1 36 77-119 157-192 (193)
469 cd03051 GST_N_GTT2_like GST_N 39.6 31 0.00067 21.6 2.4 21 165-185 2-22 (74)
470 KOG2507 Ubiquitin regulatory p 38.8 2.8E+02 0.0061 24.9 8.5 93 29-124 16-112 (506)
471 TIGR02742 TrbC_Ftype type-F co 38.1 65 0.0014 23.6 4.1 43 77-121 61-113 (130)
472 COG1651 DsbG Protein-disulfide 36.1 1.1E+02 0.0023 24.8 5.6 42 161-203 85-126 (244)
473 cd03031 GRX_GRX_like Glutaredo 36.1 1.1E+02 0.0024 23.0 5.2 51 35-92 2-64 (147)
474 cd03059 GST_N_SspA GST_N famil 35.9 44 0.00096 20.9 2.7 67 165-247 2-71 (73)
475 COG1651 DsbG Protein-disulfide 35.8 66 0.0014 26.1 4.3 38 77-122 205-242 (244)
476 COG3411 Ferredoxin [Energy pro 34.9 93 0.002 19.6 3.8 32 215-252 17-48 (64)
477 COG0821 gcpE 1-hydroxy-2-methy 33.2 1.2E+02 0.0026 26.2 5.4 79 171-251 263-353 (361)
478 PF11317 DUF3119: Protein of u 31.3 1.2E+02 0.0027 21.7 4.4 37 212-250 80-116 (116)
479 cd03037 GST_N_GRX2 GST_N famil 31.2 45 0.00098 20.8 2.2 20 166-185 3-22 (71)
480 COG1331 Highly conserved prote 29.7 2E+02 0.0044 27.4 6.7 94 5-102 15-121 (667)
481 KOG1752 Glutaredoxin and relat 28.5 2.1E+02 0.0046 20.0 6.1 52 34-92 15-71 (104)
482 PF14097 SpoVAE: Stage V sporu 28.2 90 0.0019 24.0 3.5 54 107-169 7-61 (180)
483 PF07700 HNOB: Heme NO binding 27.9 1.3E+02 0.0029 22.9 4.7 44 159-203 126-169 (171)
484 cd03024 DsbA_FrnE DsbA family, 27.9 87 0.0019 24.3 3.7 36 77-119 165-200 (201)
485 PF00255 GSHPx: Glutathione pe 27.9 2.2E+02 0.0048 20.1 5.3 44 160-205 21-64 (108)
486 PRK09301 circadian clock prote 27.5 2.2E+02 0.0048 19.9 5.6 78 161-242 6-86 (103)
487 PF02630 SCO1-SenC: SCO1/SenC; 27.4 2.4E+02 0.0052 21.6 6.0 54 30-84 51-110 (174)
488 PF04134 DUF393: Protein of un 27.1 85 0.0018 21.9 3.2 55 167-225 2-61 (114)
489 cd03045 GST_N_Delta_Epsilon GS 26.7 63 0.0014 20.2 2.3 49 165-219 2-56 (74)
490 PF09673 TrbC_Ftype: Type-F co 26.7 2.4E+02 0.0051 20.0 6.8 46 43-98 35-80 (113)
491 KOG3384 Selenoprotein [General 25.8 1.4E+02 0.0031 22.0 4.0 36 215-250 117-152 (154)
492 cd03071 PDI_b'_NRX PDIb' famil 25.4 2.5E+02 0.0054 19.9 6.7 90 160-249 14-115 (116)
493 PRK13730 conjugal transfer pil 25.2 1.5E+02 0.0034 23.6 4.4 41 77-121 152-192 (212)
494 PF04551 GcpE: GcpE protein; 24.9 1E+02 0.0022 26.8 3.7 76 171-248 270-358 (359)
495 TIGR02654 circ_KaiB circadian 23.0 2.5E+02 0.0054 19.0 5.8 72 162-237 4-77 (87)
496 KOG2868 Decapping enzyme compl 21.8 2.3E+02 0.0049 24.4 5.0 66 180-250 25-91 (335)
497 PF09936 Methyltrn_RNA_4: SAM- 21.6 1.2E+02 0.0027 23.6 3.2 56 110-171 88-143 (185)
498 PRK00366 ispG 4-hydroxy-3-meth 21.6 3E+02 0.0065 24.1 5.8 75 172-248 271-356 (360)
499 COG2077 Tpx Peroxiredoxin [Pos 20.1 3.4E+02 0.0074 20.6 5.1 52 33-88 47-102 (158)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-40 Score=282.97 Aligned_cols=263 Identities=40% Similarity=0.690 Sum_probs=233.0
Q ss_pred hHHHHHhhcCCCceEeeCcccccccccCCcceEEEEEEcc--cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHH
Q 024107 3 KILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFL 80 (272)
Q Consensus 3 ~l~~fi~~~s~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~--~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~ 80 (272)
.|..||..++.|++.++|.++...++++..+.-+.||... ...+.+.+.+.++|+++++++.|+.+|.... ....
T Consensus 226 ~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~---~~~~ 302 (493)
T KOG0190|consen 226 LLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESF---ARVL 302 (493)
T ss_pred HHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHh---hHHH
Confidence 4789999999999999999999999988877777888766 4889999999999999999999999988888 7899
Q ss_pred hhcCCCCCC-ceEEEEEeCCcceeecCCCC-CChHHHHHHHHHHhcCccccccccCCCCCCCC-CCeEEecccchhHHhh
Q 024107 81 TLFGLEESK-NTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN-ANVQIVVGKTFDDLVL 157 (272)
Q Consensus 81 ~~~~i~~~~-P~i~~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~v~ 157 (272)
+.||+.... |.. .+..+..+.+|...++ .+.++|..|+.+++.|+++++++|+|+|++.. .+|+.+.+++|++.+.
T Consensus 303 ~~~Gl~~~~~~~~-~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~ 381 (493)
T KOG0190|consen 303 EFFGLEEEQLPIR-AVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVL 381 (493)
T ss_pred HhcCcccccCCee-EEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhh
Confidence 999999444 734 5666677788988665 88889999999999999999999999999877 7899999999999999
Q ss_pred cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeCCCCcCceEeeCCCC
Q 024107 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSS 237 (272)
Q Consensus 158 ~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~ 237 (272)
+.++.+||.||||||++|+++.|.|+++|+.+++.+++.++.+|.+.|+++...+.++||+++|+.|.+..|+.|.|.++
T Consensus 382 de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~ 461 (493)
T KOG0190|consen 382 DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTILFFPAGHKSNPVIYNGDRT 461 (493)
T ss_pred ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEEEecCCCCCCCcccCCCcc
Confidence 99999999999999999999999999999999998899999999999999988999999999999999888999999999
Q ss_pred HHHHHHHHHHHcCcCCCCCcchhccccccCCcCCC
Q 024107 238 SKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL 272 (272)
Q Consensus 238 ~~~l~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~ 272 (272)
.++|..||.++-+.......++...+ ..+|||
T Consensus 462 le~~~~fi~~~a~~~~~~~~ee~~~~---~~~dEL 493 (493)
T KOG0190|consen 462 LEDLKKFIKKSATESATPKKEEKKDE---SVKDEL 493 (493)
T ss_pred hHHHHhhhccCCCccccccchhcccc---cccccC
Confidence 99999999998763333322332222 778887
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=1.7e-34 Score=259.74 Aligned_cols=243 Identities=26% Similarity=0.494 Sum_probs=214.1
Q ss_pred hhHHHHHhhcCCCceEeeCcccccccccCCcceEEEEEEcccchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchh-HH
Q 024107 2 DKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKP-FL 80 (272)
Q Consensus 2 ~~l~~fi~~~s~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~-l~ 80 (272)
++|..||..++.|.+.+++.+++..++.++.+.++.+ ....+.+++.+.|+++|+++++++.|+.+|+..+ +. ++
T Consensus 220 ~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~---~~~~~ 295 (477)
T PTZ00102 220 EELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFC-GTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQF---GSHAK 295 (477)
T ss_pred HHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEe-cCHHHHHHHHHHHHHHHHhccCceEEEEEechhc---chhHH
Confidence 5799999999999999999999999998886544333 2236677899999999999999999999999998 65 89
Q ss_pred hhcCCCCCCceEEEEEeCCcceeecCCCC----CChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHh
Q 024107 81 TLFGLEESKNTVVTAFDNKAISKFLLESD----LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV 156 (272)
Q Consensus 81 ~~~~i~~~~P~i~~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v 156 (272)
+.+|++.+ |++ ++.+.. .+|.+.+. ++.++|.+|+.++++|++.++++|+++|+.....++.+++++|++.+
T Consensus 296 ~~~gi~~~-P~~-~i~~~~--~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v 371 (477)
T PTZ00102 296 EHLLIEEF-PGL-AYQSPA--GRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIV 371 (477)
T ss_pred HhcCcccC-ceE-EEEcCC--cccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHH
Confidence 99999999 999 676643 25655544 78999999999999999999999999999888899999999999998
Q ss_pred hcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC--CCCcccCCCeEEEEeCCCCcCceEeeC
Q 024107 157 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSA 234 (272)
Q Consensus 157 ~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~--~~~~v~~~P~l~~~~~~~~~~~~~~~g 234 (272)
.+++++++|+||++||++|+.+.|.|.++|..+++.+.+.++.+|++.++. ..+++.++|++++|++|++. +++|.|
T Consensus 372 ~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~-~~~~~G 450 (477)
T PTZ00102 372 FKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERT-PIPYEG 450 (477)
T ss_pred hcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcc-eeEecC
Confidence 888999999999999999999999999999999865579999999999944 37899999999999998876 668999
Q ss_pred CCCHHHHHHHHHHHcCcCC
Q 024107 235 RSSSKNIAAFIKEQLKEKD 253 (272)
Q Consensus 235 ~~~~~~l~~~i~~~~~~~~ 253 (272)
..+.+.|.+||++++..+.
T Consensus 451 ~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 451 ERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred cCCHHHHHHHHHHcCCCCc
Confidence 9999999999999987643
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=3.3e-34 Score=256.83 Aligned_cols=246 Identities=33% Similarity=0.621 Sum_probs=219.8
Q ss_pred hhHHHHHhhcCCCceEeeCcccccccccCCcceEEEEEEcc---cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccch
Q 024107 2 DKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAK 77 (272)
Q Consensus 2 ~~l~~fi~~~s~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~---~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~ 77 (272)
++|..||..++.|.+.+++..++..++..+ +.++.|+... ..|+++...|+++|+++.+ .+.|+.+||... .
T Consensus 205 ~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~---~ 280 (462)
T TIGR01130 205 SDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDF---G 280 (462)
T ss_pred HHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHh---H
Confidence 579999999999999999999999988776 6666665543 4579999999999999996 899999999988 8
Q ss_pred hHHhhcCCC--CCCceEEEEEeCCcceeecCCC-CCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhH
Q 024107 78 PFLTLFGLE--ESKNTVVTAFDNKAISKFLLES-DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDD 154 (272)
Q Consensus 78 ~l~~~~~i~--~~~P~i~~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 154 (272)
.+|+.+|+. .+ |++ .+++..+..+|.+.+ ..+.++|.+|++++++|++++.++|+++|+.....+..+++.+|.+
T Consensus 281 ~~~~~~~~~~~~~-P~~-vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~ 358 (462)
T TIGR01130 281 RELEYFGLKAEKF-PAV-AIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDE 358 (462)
T ss_pred HHHHHcCCCccCC-ceE-EEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHH
Confidence 999999999 46 999 777765445777766 7999999999999999999999999999998788999999999999
Q ss_pred HhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCC-ceEEEEEeCCCCCCCCCcccCCCeEEEEeCCCCcCceEee
Q 024107 155 LVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVS 233 (272)
Q Consensus 155 ~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~~ 233 (272)
.+.+++++++|+||++||++|+.+.|.+.++++.+++.. ++.++.+|++.++++.+++.++|++++|++|....+++|.
T Consensus 359 ~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~~~~~~~~~~~~~~ 438 (462)
T TIGR01130 359 IVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKSEPVPYD 438 (462)
T ss_pred HhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCccccCEEEEEeCCCCcCceEec
Confidence 998889999999999999999999999999999998733 6999999999997766999999999999999875577899
Q ss_pred CCCCHHHHHHHHHHHcCcCC
Q 024107 234 ARSSSKNIAAFIKEQLKEKD 253 (272)
Q Consensus 234 g~~~~~~l~~~i~~~~~~~~ 253 (272)
|..+.+.|++||.++...+.
T Consensus 439 g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 439 GDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred CcCCHHHHHHHHHhcCCCCC
Confidence 99999999999999876543
No 4
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.4e-28 Score=210.40 Aligned_cols=223 Identities=26% Similarity=0.419 Sum_probs=190.2
Q ss_pred CceEeeCcccccc-cccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCce
Q 024107 14 PLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 91 (272)
Q Consensus 14 ~~v~~l~~~~f~~-~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~ 91 (272)
+...+++...|.. ......+++|.||++| ++|+++.|.|.+++..+++.+.++.|||+.+ .++|+.|+|.++ ||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~---~~~~~~y~i~gf-Pt 104 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH---KDLCEKYGIQGF-PT 104 (383)
T ss_pred cchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh---HHHHHhcCCccC-cE
Confidence 3344444444444 5677789999999999 9999999999999999999999999999999 899999999999 99
Q ss_pred EEEEEeCCcceeecCCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHhhcCCCcEEEEEECCC
Q 024107 92 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPW 171 (272)
Q Consensus 92 i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~~lv~f~~~~ 171 (272)
+ .+|.++ .....+.|..+.+.+..|+...+......... ..+..++..+|...+...+.+++|.||+||
T Consensus 105 l-~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~~~~~~~~~lv~f~aPw 173 (383)
T KOG0191|consen 105 L-KVFRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVE---------GEVFELTKDNFDETVKDSDADWLVEFYAPW 173 (383)
T ss_pred E-EEEcCC-CceeeccCcccHHHHHHHHHHhhccccccccC---------CceEEccccchhhhhhccCcceEEEEeccc
Confidence 9 888877 56677799999999999999987654322111 148889999999999899999999999999
Q ss_pred ChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHc
Q 024107 172 CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 172 C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 249 (272)
|++|+.+.|.|.+++..+.....+.++.+|++.. .++ ++++..+|++.+|+.|.+ ...-|.|.++.+.++.|+.+..
T Consensus 174 c~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 174 CGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred cHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc-ccccccccccHHHHHHHHHhhc
Confidence 9999999999999999997534899999999965 454 889999999999999988 2336889999999999999988
Q ss_pred CcC
Q 024107 250 KEK 252 (272)
Q Consensus 250 ~~~ 252 (272)
+..
T Consensus 253 ~~~ 255 (383)
T KOG0191|consen 253 RRN 255 (383)
T ss_pred CCC
Confidence 764
No 5
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.92 E-value=1.2e-23 Score=169.45 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=146.8
Q ss_pred cccccCCcceEEEEEE---cc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCC
Q 024107 25 ASVHSSPIKLQVYVFA---KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 99 (272)
Q Consensus 25 ~~~~~~~~~~~v~fy~---~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~ 99 (272)
.+.+.++.. ++.|++ +| ++|+.+.|.+.++++.+.+ .+.++.+|.+.. ++++++|||.+. ||+ .+|.++
T Consensus 14 ~~~~~~~~~-i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~---~~l~~~~~V~~~-Pt~-~~f~~g 87 (215)
T TIGR02187 14 LKELKNPVE-IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED---KEEAEKYGVERV-PTT-IILEEG 87 (215)
T ss_pred HHhcCCCeE-EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc---HHHHHHcCCCcc-CEE-EEEeCC
Confidence 344455544 666888 99 9999999999999999954 244555555577 899999999999 999 888877
Q ss_pred cceeecCCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHhhcCCCc-EEEEEECCCChhHHHh
Q 024107 100 AISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETT 178 (272)
Q Consensus 100 ~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~-~lv~f~~~~C~~c~~~ 178 (272)
.....++.|..+.+.+.+|+..+++-. . ....++..+.+.+- ..+++ .++.||++||++|+.+
T Consensus 88 ~~~~~~~~G~~~~~~l~~~i~~~~~~~-------~--------~~~~L~~~~~~~l~-~~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 88 KDGGIRYTGIPAGYEFAALIEDIVRVS-------Q--------GEPGLSEKTVELLQ-SLDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred eeeEEEEeecCCHHHHHHHHHHHHHhc-------C--------CCCCCCHHHHHHHH-hcCCCcEEEEEECCCCCCcHHH
Confidence 543345688889999999999886421 0 01123433444432 33444 5666999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHH
Q 024107 179 SKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 247 (272)
Q Consensus 179 ~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 247 (272)
.+.+..++... + ++.+..+|.+.+ ++ .+++|.++||++++++|. ++.|..+.+.|.+||.+
T Consensus 152 ~~~l~~l~~~~-~--~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 152 VLMAHKFALAN-D--KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHhc-C--ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-----EEECCCCHHHHHHHHHh
Confidence 99999999884 3 689999999998 55 489999999999987653 38899999999999875
No 6
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.5e-21 Score=140.74 Aligned_cols=104 Identities=25% Similarity=0.531 Sum_probs=97.2
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEE
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF 220 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~ 220 (272)
.+..++..+|++.|.++..||+|.|||+||++|+.+.|.+++++..+.+ .++++++|.+++ +++ +|+|.++||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 3556788999999999999999999999999999999999999999988 899999999999 886 999999999999
Q ss_pred EeCCCCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 221 YPAGDKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
|++|++.. ++.|..+.+.|.+||++.++
T Consensus 122 fknGe~~d--~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVD--RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEee--eecccCCHHHHHHHHHHHhc
Confidence 99999886 79999999999999998865
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.84 E-value=3.3e-20 Score=133.12 Aligned_cols=101 Identities=14% Similarity=0.253 Sum_probs=90.1
Q ss_pred CCCeEEecccchhHHh--hcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC--CCcccCC
Q 024107 141 NANVQIVVGKTFDDLV--LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP--KLQVEEY 215 (272)
Q Consensus 141 ~~~v~~l~~~~~~~~v--~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~--~~~v~~~ 215 (272)
...|.+++..+|.+.+ ...++.++|.||+|||++|+.+.|.+.++|+.+++ .+.|++|||+.+ +++ +++|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence 4568899999999973 47789999999999999999999999999999987 799999999988 553 6899999
Q ss_pred CeEEEEeCCCCcCceEeeCCCCHHHHHHHH
Q 024107 216 PTLLFYPAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 216 P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
||+++|++|+. +.+|.|..+.+.|..|+
T Consensus 86 PTl~lf~~g~~--~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRG--PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCcc--ceEEeCCCCHHHHHhhC
Confidence 99999998875 45899999999999874
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.82 E-value=1e-19 Score=129.44 Aligned_cols=101 Identities=30% Similarity=0.648 Sum_probs=93.6
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEE
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 221 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~ 221 (272)
|..++.++|++.+.+++++++|+||++||++|+.+.|.|.+++..+.+ ++.|+.+|++.+ ++ .++++.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 457899999999977789999999999999999999999999999998 799999999999 56 48999999999999
Q ss_pred eCCCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 222 PAGDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 222 ~~~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
++|+... +|.|..+.+.|.+||+++
T Consensus 79 ~~g~~~~--~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK--RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE--EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE--EEECCCCHHHHHHHHHcC
Confidence 9998875 899999999999999975
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.82 E-value=7.5e-20 Score=130.53 Aligned_cols=100 Identities=25% Similarity=0.541 Sum_probs=89.1
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEE
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF 220 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~ 220 (272)
.+..++.++|++.+.+++++++|.||++||++|+.+.|.|.+++..+.+ .+.++.+|++.+ +++ +++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 3677899999999888888999999999999999999999999999976 799999999998 664 899999999999
Q ss_pred EeCCCCcCceEeeCCCC-HHHHHHHH
Q 024107 221 YPAGDKANPIKVSARSS-SKNIAAFI 245 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~-~~~l~~~i 245 (272)
|++|+.. ..+|.|..+ .+.|.+||
T Consensus 80 ~~~g~~~-~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASK-YHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCC-ceEccCCCCCHHHHHhhC
Confidence 9998433 458999987 99999885
No 10
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.82 E-value=2.2e-19 Score=128.04 Aligned_cols=103 Identities=50% Similarity=0.941 Sum_probs=91.9
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCC-CCcccCCCeEEEE
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQVEEYPTLLFY 221 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~-~~~v~~~P~l~~~ 221 (272)
+|.++++++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+++..++.++.+|++.++++ .+++.++|++++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 378899999999988878999999999999999999999999999998744799999999998664 7788999999999
Q ss_pred eCCCCcCceEeeCCCCHHHHHHHH
Q 024107 222 PAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 222 ~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
++|++....+|.|..+...|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 998844456899999999999986
No 11
>PTZ00102 disulphide isomerase; Provisional
Probab=99.82 E-value=2.7e-18 Score=154.64 Aligned_cols=224 Identities=17% Similarity=0.209 Sum_probs=166.8
Q ss_pred CceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhc---CceEEEEEeCCCcccchhHHhhcCCCCCC
Q 024107 14 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDLAKPFLTLFGLEESK 89 (272)
Q Consensus 14 ~~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~---~~i~~~~vd~~~~~~~~~l~~~~~i~~~~ 89 (272)
..+..++..+|...+.+++.++|.||++| ++|+++.|.|.++|..+. ..+.|+.|||+.+ ..+|++|+|.++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~---~~l~~~~~i~~~- 107 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE---MELAQEFGVRGY- 107 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC---HHHHHhcCCCcc-
Confidence 46788999999999988889999999999 999999999999998875 3599999999999 899999999999
Q ss_pred ceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhcCcccccccc--------------------CC--------------
Q 024107 90 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKS--------------------QP-------------- 135 (272)
Q Consensus 90 P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~--------------------~~-------------- 135 (272)
||+ .+|++++.. .|.|.++.+.|.+|+.+.++..+...-.. ..
T Consensus 108 Pt~-~~~~~g~~~--~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~ 184 (477)
T PTZ00102 108 PTI-KFFNKGNPV--NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKH 184 (477)
T ss_pred cEE-EEEECCceE--EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhc
Confidence 999 888877544 56899999999999999876543211000 00
Q ss_pred ------------C-C-------CC---------------------CCCCeEEecccchhHHhhcCCCcEEEEEECCCChh
Q 024107 136 ------------I-P-------DN---------------------TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVT 174 (272)
Q Consensus 136 ------------~-~-------~~---------------------~~~~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~ 174 (272)
. + .+ ....+..++.+++.... .++.+++++++ .|..
T Consensus 185 ~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 261 (477)
T PTZ00102 185 REHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYI-SSGKDLVWFCG--TTED 261 (477)
T ss_pred cccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHh-cCCccEEEEec--CHHH
Confidence 0 0 00 01123444555555543 33444443332 4566
Q ss_pred HHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-C-C-CCCcccCCCeEEEEeCCCCcCceEeeC----CCCHHHHHHHHHH
Q 024107 175 CETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-H-PKLQVEEYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKE 247 (272)
Q Consensus 175 c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~-~-~~~~v~~~P~l~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~ 247 (272)
.....+.++++|+++++ ++.|+.+|+... . . ..+++..+|++++...+++- .+.+ ..+.+.|.+|+++
T Consensus 262 ~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y---~~~~~~~~~~~~~~l~~Fv~~ 336 (477)
T PTZ00102 262 YDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRY---LLPPAKESFDSVEALIEFFKD 336 (477)
T ss_pred HHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEcCCccc---CCCccccccCCHHHHHHHHHH
Confidence 67788999999999998 899999999987 3 3 37799999998887643321 2333 3689999999999
Q ss_pred HcCcC
Q 024107 248 QLKEK 252 (272)
Q Consensus 248 ~~~~~ 252 (272)
.....
T Consensus 337 ~~~gk 341 (477)
T PTZ00102 337 VEAGK 341 (477)
T ss_pred HhCCC
Confidence 87643
No 12
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.5e-19 Score=153.20 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=154.1
Q ss_pred CCceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHhhcCCCCC
Q 024107 13 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEES 88 (272)
Q Consensus 13 ~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~~~~~l~~~~~i~~~ 88 (272)
...|.+|+.++|..++..+..++|.||+|| +||++++|.+.++|..+.. .+..+.|||..+ .++|++|+|.+|
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~v~gy 100 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYEVRGY 100 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhcCCCC
Confidence 558999999999999999999999999999 9999999999999999996 488999999999 899999999999
Q ss_pred CceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecc-cchhHHhhcCCCcEEEEE
Q 024107 89 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVG-KTFDDLVLNSHKDVLLEV 167 (272)
Q Consensus 89 ~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~v~~~~~~~lv~f 167 (272)
||+ .+|.+|.. ...|.|.++++.|..|+.+..++. ...+.. +....++.. ...++|-|
T Consensus 101 -PTl-kiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa-----------------~~~l~~~~~a~~~l~~-~~~~vig~ 159 (493)
T KOG0190|consen 101 -PTL-KIFRNGRS-AQDYNGPREADGIVKWLKKQSGPA-----------------SKTLKTVDEAEEFLSK-KDVVVIGF 159 (493)
T ss_pred -CeE-EEEecCCc-ceeccCcccHHHHHHHHHhccCCC-----------------ceecccHHHHHhhccC-CceEEEEE
Confidence 999 89988864 566699999999999999975432 334443 555665533 44444444
Q ss_pred ECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCC--cccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHH
Q 024107 168 YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKL--QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 168 ~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~--~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
....-+. . ..+...|..+.+ .+.|+ +..+..-.+++ ...+.|-+++++..... .+.|.|..+.+.|.+||
T Consensus 160 F~d~~~~---~-~~~~~~a~~l~~--d~~F~-~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~-~~~~~~~~~~~~l~~Fi 231 (493)
T KOG0190|consen 160 FKDLESL---A-ESFFDAASKLRD--DYKFA-HTSDSDVAKKLELNTEGTFPIVLFKKFDEL-LVKYDGSFTPELLKKFI 231 (493)
T ss_pred ecccccc---h-HHHHHHHHhccc--cceee-ccCcHhHHhhccCCCCCcceEEeccccccc-hhhcccccCHHHHHHHH
Confidence 4332221 1 345556666666 68888 22222222333 22336667777666554 44678899999999999
Q ss_pred HHHcCc
Q 024107 246 KEQLKE 251 (272)
Q Consensus 246 ~~~~~~ 251 (272)
..+...
T Consensus 232 ~~~~~p 237 (493)
T KOG0190|consen 232 QENSLP 237 (493)
T ss_pred HHhccc
Confidence 987543
No 13
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.82 E-value=1.6e-19 Score=128.05 Aligned_cols=97 Identities=23% Similarity=0.449 Sum_probs=87.2
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEE
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 221 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~ 221 (272)
+..++.++|++.+ ..+++++|+||++||++|+.+.|.+.++|+.+++ .+.|+.+||+.+ .+ .+++|.++||+++|
T Consensus 3 ~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 3 IVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred eEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence 6788999999987 4568999999999999999999999999999987 799999999998 65 48899999999999
Q ss_pred eCCCCcCceEeeCCCCHHHHHHHH
Q 024107 222 PAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 222 ~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
++|.... +|.|..+.+.|.+|.
T Consensus 80 ~~g~~~~--~~~G~~~~~~l~~f~ 101 (101)
T cd03003 80 PSGMNPE--KYYGDRSKESLVKFA 101 (101)
T ss_pred cCCCCcc--cCCCCCCHHHHHhhC
Confidence 9987653 799999999998873
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.80 E-value=4.7e-19 Score=127.28 Aligned_cols=101 Identities=22% Similarity=0.433 Sum_probs=87.9
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCC----CceEEEEEeCCCC-CC-CCCcccCCC
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL----DNLVIAKIDASAN-EH-PKLQVEEYP 216 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~----~~v~~~~id~~~~-~~-~~~~v~~~P 216 (272)
.+..+++++|++.+ ..+++++|.||+|||++|+.+.|.|.+++..+++. ..+.++.+||+.+ ++ .+++|.++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 46788999999976 66789999999999999999999999999987532 1589999999998 66 489999999
Q ss_pred eEEEEeCCCCcCceEeeCCCCHHHHHHHH
Q 024107 217 TLLFYPAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 217 ~l~~~~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
++++|++|+.. ...|.|..+.+.|.+||
T Consensus 81 tl~~~~~g~~~-~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMM-KREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCc-ceecCCCCCHHHHHhhC
Confidence 99999998854 35799999999999986
No 15
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.79 E-value=3.1e-18 Score=137.57 Aligned_cols=215 Identities=16% Similarity=0.158 Sum_probs=157.1
Q ss_pred eCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhc-----CceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 19 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-----GKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 19 l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~-----~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
++.+|++.++.+...++|.||++| +..+.+.|.|.++|.+++ +++.++.|||+.+ ..++.+|.|+.| ||+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---~~ia~ky~I~Ky-PTl 76 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---DDIADKYHINKY-PTL 76 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---hHHhhhhccccC-cee
Confidence 466788888989999999999999 999999999999999887 4699999999999 799999999999 999
Q ss_pred EEEEeCCcceeecCCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecc-cchhHHhhcCCCcEEEEEECCC
Q 024107 93 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVG-KTFDDLVLNSHKDVLLEVYTPW 171 (272)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~v~~~~~~~lv~f~~~~ 171 (272)
.+|.+|...+..|.|.++++.+.+|+++.++..+ .+..+ +.+......+++.++.+|-...
T Consensus 77 -KvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i-----------------~Ef~sl~~l~n~~~p~K~~vIgyF~~kd 138 (375)
T KOG0912|consen 77 -KVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPI-----------------NEFESLDQLQNLDIPSKRTVIGYFPSKD 138 (375)
T ss_pred -eeeeccchhhhhhccchhHHHHHHHHHHHhccHH-----------------HHHHhHHHHHhhhccccceEEEEeccCC
Confidence 8999887766667999999999999999876532 22222 3444444345677888887555
Q ss_pred ChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeCCCCcCceEeeCCC-CHHHHHHHHHHHcC
Q 024107 172 CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARS-SSKNIAAFIKEQLK 250 (272)
Q Consensus 172 C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~~g~~-~~~~l~~~i~~~~~ 250 (272)
.+. ...+.++|..+++...+.++.-|.....- -.+.+ +++|+++.....-.|.|.+ +.+.+..||.+.|-
T Consensus 139 spe----y~~~~kva~~lr~dc~f~V~~gD~~~~~~----~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcv 209 (375)
T KOG0912|consen 139 SPE----YDNLRKVASLLRDDCVFLVGFGDLLKPHE----PPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCV 209 (375)
T ss_pred Cch----HHHHHHHHHHHhhccEEEeeccccccCCC----CCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcch
Confidence 443 34678888888875444444445443311 11222 4555555443222599985 57999999999998
Q ss_pred cCCC----CCcchhcccc
Q 024107 251 EKDQ----SPKDEQWKEK 264 (272)
Q Consensus 251 ~~~~----~~~~e~~~~~ 264 (272)
.-.+ ...+|+.++.
T Consensus 210 pLVREiTFeN~EELtEEG 227 (375)
T KOG0912|consen 210 PLVREITFENAEELTEEG 227 (375)
T ss_pred hhhhhhhhccHHHHhhcC
Confidence 7655 4445555443
No 16
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=8.8e-19 Score=126.06 Aligned_cols=101 Identities=30% Similarity=0.506 Sum_probs=89.6
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC--C-CCC-CCcccCCCeEE
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N-EHP-KLQVEEYPTLL 219 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~--~-~~~-~~~v~~~P~l~ 219 (272)
+..++.++|.+.+.+.+++++|.||++||++|+.+.|.+.++++.+.+ .+.++.+|++. + ++. ++++.++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 678899999999988888999999999999999999999999999987 79999999998 5 454 88999999999
Q ss_pred EEeCCCC---cCceEeeCCCCHHHHHHHHH
Q 024107 220 FYPAGDK---ANPIKVSARSSSKNIAAFIK 246 (272)
Q Consensus 220 ~~~~~~~---~~~~~~~g~~~~~~l~~~i~ 246 (272)
+|++|++ ..+..|.|..+.+.|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9998872 22457999999999999983
No 17
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.79 E-value=8.6e-19 Score=124.35 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=90.3
Q ss_pred CceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 14 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 14 ~~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
|.+.++++++|++.+..+++++|.||++| ++|+++.|.|+++|+.+.+.+.|+.|||+++ +.+|++++|.++ ||+
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~-Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD---RMLCRSQGVNSY-PSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc---HHHHHHcCCCcc-CEE
Confidence 45788999999999888899999999999 9999999999999999998899999999998 899999999999 999
Q ss_pred EEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 93 VTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
.+|.++. ....|.|.++.+.|.+|+
T Consensus 77 -~~~~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 77 -YVFPSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred -EEEcCCC-CcccCCCCCCHHHHHhhC
Confidence 8887664 345579999999998873
No 18
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.78 E-value=1.5e-18 Score=124.51 Aligned_cols=102 Identities=9% Similarity=0.062 Sum_probs=90.0
Q ss_pred CCCceEeeCccccccc---ccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHH-hhcCCC
Q 024107 12 KFPLVTKLTDINSASV---HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFL-TLFGLE 86 (272)
Q Consensus 12 s~~~v~~l~~~~f~~~---~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~-~~~~i~ 86 (272)
+.+.|.+|++++|.+. ..+++.++|.||++| ++|+.+.|.|.++|+.+++.+.|+.|||+.+ .++| ++|+|.
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~---~~l~~~~~~I~ 83 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP---QGKCRKQKHFF 83 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC---hHHHHHhcCCc
Confidence 4577999999999986 578889999999999 9999999999999999998899999999998 7899 589999
Q ss_pred CCCceEEEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 87 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 87 ~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
++ ||+ .+|.++. ....|.|.++.+.|..|+
T Consensus 84 ~~-PTl-~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 84 YF-PVI-HLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cc-CEE-EEEECCc-cceEEeCCCCHHHHHhhC
Confidence 99 999 7776554 344568999999998873
No 19
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.78 E-value=6.6e-18 Score=135.65 Aligned_cols=179 Identities=14% Similarity=0.195 Sum_probs=131.2
Q ss_pred cceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCC
Q 024107 32 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE 107 (272)
Q Consensus 32 ~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~ 107 (272)
.-|+|.||+|| .||+++.|+|.+++..+++ -+.++++||..+ +.++++|||.+| ||| .+|.++ ..|.|.
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f---~aiAnefgiqGY-PTI-k~~kgd--~a~dYR 116 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF---PAIANEFGIQGY-PTI-KFFKGD--HAIDYR 116 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc---hhhHhhhccCCC-ceE-EEecCC--eeeecC
Confidence 48999999999 9999999999999999885 399999999999 999999999999 999 899876 677889
Q ss_pred CCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEeccc--chhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHH
Q 024107 108 SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGK--TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKL 185 (272)
Q Consensus 108 g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~ 185 (272)
|+++.+.|.+|..+.-.. .+..++.. .|.. +...+++.+|+|.+..-+ +...+..+
T Consensus 117 G~R~Kd~iieFAhR~a~a-----------------iI~pi~enQ~~feh-lq~Rhq~ffVf~Gtge~P----L~d~fidA 174 (468)
T KOG4277|consen 117 GGREKDAIIEFAHRCAAA-----------------IIEPINENQIEFEH-LQARHQPFFVFFGTGEGP----LFDAFIDA 174 (468)
T ss_pred CCccHHHHHHHHHhcccc-----------------eeeecChhHHHHHH-HhhccCceEEEEeCCCCc----HHHHHHHH
Confidence 999999999999997432 13334442 2333 346688999999765421 22233333
Q ss_pred HHHhcCCCceEEEEEeCCCCCC-C-CCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 186 AKHFKGLDNLVIAKIDASANEH-P-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 186 a~~~~~~~~v~~~~id~~~~~~-~-~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
|.. ++.+++.-....+. + .-.....|.+.+|++..- .....-+.++|.+||++.
T Consensus 175 ASe-----~~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf----~i~de~dd~dLseWinRE 230 (468)
T KOG4277|consen 175 ASE-----KFSVARFFSASEEVAPEENDAKEMPAVAVFKDETF----EIEDEGDDEDLSEWINRE 230 (468)
T ss_pred hhh-----heeeeeeeccccccCCcccchhhccceEEEcccee----EEEecCchhHHHHHHhHh
Confidence 332 34555543333333 4 346677899999998742 223334568999999864
No 20
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.78 E-value=2.2e-18 Score=124.45 Aligned_cols=102 Identities=11% Similarity=0.152 Sum_probs=92.1
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChh--HH--HhHHHHHHHHHHh--cCCCceEEEEEeCCCC-CCC-CCcccC
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVT--CE--TTSKQIEKLAKHF--KGLDNLVIAKIDASAN-EHP-KLQVEE 214 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~--c~--~~~~~~~~~a~~~--~~~~~v~~~~id~~~~-~~~-~~~v~~ 214 (272)
.+..++.++|++.+.+++.+++++|+++||++ |+ .+.|.+.++|.++ .+ ++.|+.+|++.+ +++ +|+|.+
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCCcc
Confidence 68889999999999988999999999999987 99 8889999999888 55 799999999999 775 999999
Q ss_pred CCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHc
Q 024107 215 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 215 ~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 249 (272)
+||+++|++|+.+ .|.|..+.+.|.+||.+.+
T Consensus 88 iPTl~lfk~G~~v---~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVI---EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEE---EeeCCCCHHHHHHHHHHHh
Confidence 9999999999843 5999999999999999764
No 21
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.78 E-value=1.3e-17 Score=149.63 Aligned_cols=207 Identities=16% Similarity=0.167 Sum_probs=150.9
Q ss_pred ceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCc
Q 024107 15 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKN 90 (272)
Q Consensus 15 ~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~~~~~l~~~~~i~~~~P 90 (272)
.|..+++++|...+..++.++|.||++| ++|+++.|.|.++|+.+.+ .+.|+.|||+.+ +++|+++||.++ |
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~-P 77 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE---KDLAQKYGVSGY-P 77 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc---HHHHHhCCCccc-c
Confidence 4678999999999988999999999999 9999999999999998874 399999999999 899999999999 9
Q ss_pred eEEEEEeCCcceeecCCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEec-ccchhHHhhcCCCcEEEEEEC
Q 024107 91 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV-GKTFDDLVLNSHKDVLLEVYT 169 (272)
Q Consensus 91 ~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~v~~~~~~~lv~f~~ 169 (272)
|+ .++.++......|.|.++.++|.+|+.+.+.. .+..++ .++++.++.. +...+|.|+.
T Consensus 78 t~-~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~-----------------~~~~i~~~~~~~~~~~~-~~~~vi~~~~ 138 (462)
T TIGR01130 78 TL-KIFRNGEDSVSDYNGPRDADGIVKYMKKQSGP-----------------AVKEIETVADLEAFLAD-DDVVVIGFFK 138 (462)
T ss_pred EE-EEEeCCccceeEecCCCCHHHHHHHHHHhcCC-----------------CceeecCHHHHHHHHhc-CCcEEEEEEC
Confidence 99 88887654245569999999999999998653 244554 4677777644 5566666654
Q ss_pred CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeCCCCc-CceEeeCCC--CHHHHHHHHH
Q 024107 170 PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKA-NPIKVSARS--SSKNIAAFIK 246 (272)
Q Consensus 170 ~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~~~-~~~~~~g~~--~~~~l~~~i~ 246 (272)
.. -......+.++|..+.. ...+.....+......++.. -|++.+|...... ....|.|.. +.+.|..||+
T Consensus 139 ~~---~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~ 212 (462)
T TIGR01130 139 DL---DSELNDTFLSVAEKLRD--VYFFFAHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIR 212 (462)
T ss_pred CC---CcHHHHHHHHHHHHhhh--ccceEEecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHH
Confidence 41 13666789999999987 34432222221112233332 3566666443222 123567765 5689999999
Q ss_pred HHcC
Q 024107 247 EQLK 250 (272)
Q Consensus 247 ~~~~ 250 (272)
.+.-
T Consensus 213 ~~~~ 216 (462)
T TIGR01130 213 AESL 216 (462)
T ss_pred HcCC
Confidence 7654
No 22
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.2e-18 Score=139.32 Aligned_cols=105 Identities=24% Similarity=0.542 Sum_probs=97.9
Q ss_pred CeEEecccchhHHhhcC--CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeE
Q 024107 143 NVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTL 218 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~--~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l 218 (272)
.|.++|..+|.+.|..+ ..||+|+||+|||++|+.+.|.+++++..+++ ++.+++|||+.. .+. .|+|.++|++
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 49999999999999644 45999999999999999999999999999999 899999999999 775 9999999999
Q ss_pred EEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCc
Q 024107 219 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251 (272)
Q Consensus 219 ~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 251 (272)
+.|++|+.+. .|.|....+.|.+|+.++++.
T Consensus 102 ~af~dGqpVd--gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQPVD--GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCcCcc--ccCCCCcHHHHHHHHHHhcCh
Confidence 9999999886 699999999999999999886
No 23
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=4.2e-18 Score=121.19 Aligned_cols=99 Identities=29% Similarity=0.531 Sum_probs=89.2
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEE
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 221 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~ 221 (272)
+..+++.+|.+.+.+.+++++|+||++||++|+.+.|.|.+++..+.+ .+.++.+|++.+ ++ .+++|.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 567889999999877778899999999999999999999999999987 799999999998 66 48899999999999
Q ss_pred eCCCCcCceEeeCCCCHHHHHHHH
Q 024107 222 PAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 222 ~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
++|... ...|.|..+.+.|.+|+
T Consensus 80 ~~~~~~-~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNS-PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcc-eeecCCCCCHHHHHHHh
Confidence 988443 66899999999999997
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.76 E-value=9.1e-18 Score=120.76 Aligned_cols=103 Identities=24% Similarity=0.568 Sum_probs=92.8
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEE
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 220 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~ 220 (272)
.+..+++++|.+.+.+.+++++|+||++||++|+.+.|.++++++.+.+ ++.++.+|++.+ .+ .++++.++|++++
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 5778899999998877789999999999999999999999999999987 799999999998 55 4889999999999
Q ss_pred EeCCCCcCceEeeCCCCHHHHHHHHHHHc
Q 024107 221 YPAGDKANPIKVSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 249 (272)
|++|+... ++.|..+.+.|.+||.+++
T Consensus 82 ~~~G~~~~--~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 82 FKNGEVAA--TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EeCCeEEE--EecCCCCHHHHHHHHHHhc
Confidence 99887654 7889999999999999875
No 25
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.76 E-value=2.9e-18 Score=122.29 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=89.7
Q ss_pred CceEeeCcccccccc-cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCce
Q 024107 14 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 91 (272)
Q Consensus 14 ~~v~~l~~~~f~~~~-~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~ 91 (272)
|.+.++++++|++.+ .++++++|.||++| ++|+.+.|.|.++++.+.+.+.|+.|||+.+ +++|+++||.++ ||
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~i~~~-Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY---ESLCQQANIRAY-PT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch---HHHHHHcCCCcc-cE
Confidence 457789999999975 55679999999999 9999999999999999988899999999999 899999999999 99
Q ss_pred EEEEEeCCcceeecCCCCCC-hHHHHHHH
Q 024107 92 VVTAFDNKAISKFLLESDLT-PSNIEEFC 119 (272)
Q Consensus 92 i~~~~~~~~~~~~~~~g~~~-~~~i~~fi 119 (272)
+ .+|.+++...+.|.|..+ .++|.+|+
T Consensus 77 ~-~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 I-RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred E-EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9 888876455677799887 99998885
No 26
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.75 E-value=6.2e-18 Score=121.41 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=89.1
Q ss_pred ceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhc------CceEEEEEeCCCcccchhHHhhcCCCC
Q 024107 15 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK------GKIMFTAVDIADEDLAKPFLTLFGLEE 87 (272)
Q Consensus 15 ~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~------~~i~~~~vd~~~~~~~~~l~~~~~i~~ 87 (272)
.+.++++++|++.++.+++++|.||++| ++|+++.|.|+++|+.++ +.+.|+.|||+.+ .++|++|||.+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~---~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE---SDIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHHHhCCCCc
Confidence 5788999999999988889999999999 999999999999998864 2489999999999 89999999999
Q ss_pred CCceEEEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 88 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 88 ~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
+ ||+ .+|.+++.....|.|.++.++|.+|+
T Consensus 79 ~-Ptl-~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 Y-PTL-KLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred C-CEE-EEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9 999 88887764446678999999999985
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.75 E-value=1.2e-17 Score=118.38 Aligned_cols=98 Identities=21% Similarity=0.463 Sum_probs=84.6
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEE
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF 220 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~ 220 (272)
.+..++.++|++.+ . + .++|.||++||++|+.+.|.|.+++..+++. ++.++.+|++.+ .+. +++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~-~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVL-E-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHh-C-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 47789999999876 2 2 3799999999999999999999999987643 699999999988 554 899999999999
Q ss_pred EeCCCCcCceEeeCCCCHHHHHHHHHH
Q 024107 221 YPAGDKANPIKVSARSSSKNIAAFIKE 247 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l~~~i~~ 247 (272)
|++|. . .+|.|..+.+.|.+||++
T Consensus 78 ~~~g~-~--~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGV-F--RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCC-E--EEecCCCCHHHHHHHHhC
Confidence 98886 2 379999999999999874
No 28
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.75 E-value=9.5e-18 Score=117.82 Aligned_cols=93 Identities=18% Similarity=0.468 Sum_probs=82.4
Q ss_pred cchhHHhhcC-CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCC
Q 024107 150 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDK 226 (272)
Q Consensus 150 ~~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~ 226 (272)
++|++.+.++ +++++|+||++||++|+.+.|.+.+++..+.+ .+.++.+|++.+ .+. ++++.++|++++|++|+.
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3677878655 78999999999999999999999999999987 799999999999 664 899999999999998876
Q ss_pred cCceEeeCCCCHHHHHHHHH
Q 024107 227 ANPIKVSARSSSKNIAAFIK 246 (272)
Q Consensus 227 ~~~~~~~g~~~~~~l~~~i~ 246 (272)
.. ++.|..+.+.|..||+
T Consensus 79 ~~--~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VD--GFQGAQPEEQLRQMLD 96 (96)
T ss_pred ee--eecCCCCHHHHHHHhC
Confidence 54 7999999999999873
No 29
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.75 E-value=1.6e-17 Score=118.07 Aligned_cols=100 Identities=24% Similarity=0.340 Sum_probs=91.4
Q ss_pred eEeeCcccccccccC-CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEE
Q 024107 16 VTKLTDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 93 (272)
Q Consensus 16 v~~l~~~~f~~~~~~-~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~ 93 (272)
|..+|.++|++.+.+ +++++|+||++| ++|+.+.|.|.++++.+.+.+.|+.|||++. +.+|++|+|.++ ||+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~v~~~-Pt~- 75 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN---KELCKKYGVKSV-PTI- 75 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS---HHHHHHTTCSSS-SEE-
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc---chhhhccCCCCC-CEE-
Confidence 578999999998876 899999999999 9999999999999999998899999999998 899999999999 999
Q ss_pred EEEeCCcceeecCCCCCChHHHHHHHHH
Q 024107 94 TAFDNKAISKFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 121 (272)
.++.++.... .+.|.++.++|.+|+++
T Consensus 76 ~~~~~g~~~~-~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 76 IFFKNGKEVK-RYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EEEETTEEEE-EEESSSSHHHHHHHHHH
T ss_pred EEEECCcEEE-EEECCCCHHHHHHHHHc
Confidence 8888776443 56899999999999986
No 30
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.75 E-value=1.8e-17 Score=119.14 Aligned_cols=101 Identities=28% Similarity=0.630 Sum_probs=86.5
Q ss_pred CeEEecccchhHHhh--cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC-C-CCC--CCcccCCC
Q 024107 143 NVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-N-EHP--KLQVEEYP 216 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~--~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~-~-~~~--~~~v~~~P 216 (272)
.|..++.++|+.++. +++++++|.||++||++|+.+.|.|.+++..+++. ++.++.+|++. + .++ .+++.++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccchhhHHhhcCCCcCC
Confidence 367889999999884 35789999999999999999999999999999863 59999999998 3 443 48999999
Q ss_pred eEEEEeCCCCcCceEeeCC-CCHHHHHHHH
Q 024107 217 TLLFYPAGDKANPIKVSAR-SSSKNIAAFI 245 (272)
Q Consensus 217 ~l~~~~~~~~~~~~~~~g~-~~~~~l~~~i 245 (272)
|+++|++|... +..|.|. .+.++|+.||
T Consensus 81 ti~~f~~~~~~-~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQ-PIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCC-ceeccCCCCCHHHHHhhC
Confidence 99999887654 5689995 7999999986
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.74 E-value=1.9e-17 Score=117.55 Aligned_cols=98 Identities=29% Similarity=0.583 Sum_probs=85.0
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcC-CCceEEEEEeCCCC-CC-CCCcccCCCeEEE
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 220 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~-~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~ 220 (272)
+..+++++|++.+.+ +.++|.||++||++|+.+.|.+.++++.+++ .+.+.++.+|++.+ .+ .++++.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567889999998843 3599999999999999999999999999976 23699999999988 55 4889999999999
Q ss_pred EeCCCCcCceEeeCCCCHHHHHHHH
Q 024107 221 YPAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
|++|+.. .+|.|..+.+.|.+||
T Consensus 80 ~~~g~~~--~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKV--DKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCee--eEeeCCCCHHHHHhhC
Confidence 9988754 3799999999998885
No 32
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.74 E-value=2.3e-17 Score=117.73 Aligned_cols=101 Identities=38% Similarity=0.719 Sum_probs=88.4
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC-C-CCC-CCcccCCCeEEE
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-N-EHP-KLQVEEYPTLLF 220 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~-~-~~~-~~~v~~~P~l~~ 220 (272)
+..+++++|++.+.+++++++|+||++||++|+.+.+.+..+++.+++..++.++.+|++. + .+. ++++.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678899999988777779999999999999999999999999999844479999999999 6 554 889999999999
Q ss_pred EeCCCCcCceEeeCCCCHHHHHHHH
Q 024107 221 YPAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
|++|+.. ..+|.|..+.+.|.+||
T Consensus 82 ~~~~~~~-~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTE-PVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCC-ccccCCccCHHHHHhhC
Confidence 9888544 45799999999999985
No 33
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.74 E-value=9.2e-18 Score=120.93 Aligned_cols=99 Identities=14% Similarity=0.330 Sum_probs=84.3
Q ss_pred EecccchhHHhhc--CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEE
Q 024107 146 IVVGKTFDDLVLN--SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 221 (272)
Q Consensus 146 ~l~~~~~~~~v~~--~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~ 221 (272)
.++..+|.+.+.. .+++++|.||+|||++|+.+.|.+.++++.+.+. ++.++.+|++.+ .+ .+++|.++||+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 3466778766643 5789999999999999999999999999999763 599999999988 55 48999999999999
Q ss_pred eCCCCcCceEeeCCCCHHHHHHHHHH
Q 024107 222 PAGDKANPIKVSARSSSKNIAAFIKE 247 (272)
Q Consensus 222 ~~~~~~~~~~~~g~~~~~~l~~~i~~ 247 (272)
++|+... ++.|..+.+.|.+||.+
T Consensus 87 ~~g~~~~--~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTF--YHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEE--EecCCCCHHHHHHHHhc
Confidence 9886543 67898999999999975
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.73 E-value=2.4e-17 Score=117.00 Aligned_cols=100 Identities=40% Similarity=0.803 Sum_probs=88.6
Q ss_pred ecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCC
Q 024107 147 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAG 224 (272)
Q Consensus 147 l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~ 224 (272)
|++++|++.+. .+++++|+||++||+.|+.+.+.|..++..+.+.+++.++.+|++.+ .+ .++++.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 46778998875 78899999999999999999999999999998754699999999998 66 48999999999999998
Q ss_pred CCcCceEeeCCCCHHHHHHHHHHHc
Q 024107 225 DKANPIKVSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 225 ~~~~~~~~~g~~~~~~l~~~i~~~~ 249 (272)
+. ..+|.|..+.+.|..||.+++
T Consensus 80 ~~--~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KK--PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Cc--ceeecCCCCHHHHHHHHHhcC
Confidence 76 458999999999999999763
No 35
>PHA02278 thioredoxin-like protein
Probab=99.73 E-value=1.7e-17 Score=117.13 Aligned_cols=90 Identities=16% Similarity=0.262 Sum_probs=77.4
Q ss_pred cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-----CC-CCCcccCCCeEEEEeC
Q 024107 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----EH-PKLQVEEYPTLLFYPA 223 (272)
Q Consensus 150 ~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-----~~-~~~~v~~~P~l~~~~~ 223 (272)
++|.+.+ ..+++++|+|||+||++|+.+.|.+.+++..+.. ++.|+.+|++.+ ++ .+++|.++||+++|++
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 5677776 5789999999999999999999999999988655 578899999975 33 3889999999999999
Q ss_pred CCCcCceEeeCCCCHHHHHHH
Q 024107 224 GDKANPIKVSARSSSKNIAAF 244 (272)
Q Consensus 224 ~~~~~~~~~~g~~~~~~l~~~ 244 (272)
|+.+. +..|..+.+.|.++
T Consensus 82 G~~v~--~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVK--KYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEE--EEeCCCCHHHHHhh
Confidence 98775 78998888888775
No 36
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.73 E-value=3.3e-17 Score=131.05 Aligned_cols=108 Identities=27% Similarity=0.549 Sum_probs=93.7
Q ss_pred CCCeEEecccchhHHhhcC----CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccC
Q 024107 141 NANVQIVVGKTFDDLVLNS----HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE 214 (272)
Q Consensus 141 ~~~v~~l~~~~~~~~v~~~----~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~ 214 (272)
...+..++.++|++.+..+ +++++|+||+|||++|+.+.|.|.++++.+++ .+.++.+|++.+ ++. +++|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 3468999999999988643 57999999999999999999999999999987 799999999998 664 899999
Q ss_pred CCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCcC
Q 024107 215 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 252 (272)
Q Consensus 215 ~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 252 (272)
+||+++|++|+... .+.|..+.+.|.+|+.+.....
T Consensus 107 ~PTl~~f~~G~~v~--~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 107 YPTLLLFDKGKMYQ--YEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCEEEEEECCEEEE--eeCCCCCHHHHHHHHHHHHHhh
Confidence 99999999886442 3567799999999999987544
No 37
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.72 E-value=1.8e-17 Score=117.89 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=71.5
Q ss_pred ccchhHHhhc-CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCC
Q 024107 149 GKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGD 225 (272)
Q Consensus 149 ~~~~~~~v~~-~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~ 225 (272)
.++|++.+.. .+++++|.|||+||++|+.|.|.+.+++.++.+ .+.|+.+|++.+ ++. +++|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3567777753 578999999999999999999999999999987 689999999999 774 89999999999999998
Q ss_pred CcCceEeeC
Q 024107 226 KANPIKVSA 234 (272)
Q Consensus 226 ~~~~~~~~g 234 (272)
.+. +..|
T Consensus 80 ~v~--~~~G 86 (114)
T cd02954 80 HMK--IDLG 86 (114)
T ss_pred EEE--EEcC
Confidence 775 4555
No 38
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=3.9e-17 Score=116.51 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=78.0
Q ss_pred eEeeCcccccccccCCcceEEEEEE--cc-c---chHHHHHHHHHHHHHhcCceEEEEEeCCCccc--chhHHhhcCCC-
Q 024107 16 VTKLTDINSASVHSSPIKLQVYVFA--KA-D---DLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--AKPFLTLFGLE- 86 (272)
Q Consensus 16 v~~l~~~~f~~~~~~~~~~~v~fy~--~~-~---~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~--~~~l~~~~~i~- 86 (272)
+..|++.||++++++.+.++|.||+ || + +|+++.|.+.+.+. .|.++.|||+++.+ ..+||++|||+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCCc
Confidence 5679999999999999999999999 55 5 45555544444443 39999999953111 06899999999
Q ss_pred -CCCceEEEEEeCCc-ceeecCCCC-CChHHHHHHHHHH
Q 024107 87 -ESKNTVVTAFDNKA-ISKFLLESD-LTPSNIEEFCSRL 122 (272)
Q Consensus 87 -~~~P~i~~~~~~~~-~~~~~~~g~-~~~~~i~~fi~~~ 122 (272)
+| ||| .+|.++. .....|.|. ++.+.|.+|+.+.
T Consensus 79 ~gy-PTl-~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESY-PVI-YLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCC-CEE-EEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99 999 8888763 234566896 9999999999873
No 39
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.71 E-value=5.6e-17 Score=114.45 Aligned_cols=88 Identities=19% Similarity=0.377 Sum_probs=75.0
Q ss_pred hhHHhh-cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC-CC-CC-CCCcccCCCeEEEEeCCCCc
Q 024107 152 FDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQVEEYPTLLFYPAGDKA 227 (272)
Q Consensus 152 ~~~~v~-~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~-~~-~~-~~~~v~~~P~l~~~~~~~~~ 227 (272)
+..++. ..+++++|.||++||++|+.+.|.|.++++.++ ++.++.+|++ .+ ++ .+++|.++||+++|++| .
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~- 83 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P- 83 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c-
Confidence 334443 458899999999999999999999999999997 4788999998 55 55 48999999999999988 4
Q ss_pred CceEeeCCCCHHHHHHHH
Q 024107 228 NPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 228 ~~~~~~g~~~~~~l~~~i 245 (272)
..+|.|..+.+.|.+||
T Consensus 84 -~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 -RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred -eeEecCCCCHHHHHhhC
Confidence 44899999999999986
No 40
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=5.3e-17 Score=115.85 Aligned_cols=98 Identities=19% Similarity=0.362 Sum_probs=80.2
Q ss_pred eEEecccchhHHhhcCCCcEEEEEEC--CCCh---hHHHhHHHHHHHHHHhcCCCceEEEEEeCC-----CC-CCC-CCc
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYT--PWCV---TCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----AN-EHP-KLQ 211 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~--~~C~---~c~~~~~~~~~~a~~~~~~~~v~~~~id~~-----~~-~~~-~~~ 211 (272)
+..|+..+|++.| ..++.+||.||+ |||+ +|+.+.|.+...+. .+.++.|||+ .+ +++ +|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 6789999999987 667889999999 9999 66666666555443 4899999995 34 564 899
Q ss_pred cc--CCCeEEEEeCCCCcCceEeeCC-CCHHHHHHHHHHH
Q 024107 212 VE--EYPTLLFYPAGDKANPIKVSAR-SSSKNIAAFIKEQ 248 (272)
Q Consensus 212 v~--~~P~l~~~~~~~~~~~~~~~g~-~~~~~l~~~i~~~ 248 (272)
|+ ++||+++|++|....++.|.|. ++.++|++||+++
T Consensus 76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99 9999999999864335689996 9999999999986
No 41
>PRK10996 thioredoxin 2; Provisional
Probab=99.70 E-value=1.8e-16 Score=118.72 Aligned_cols=102 Identities=21% Similarity=0.521 Sum_probs=90.2
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEE
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 220 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~ 220 (272)
.+.+++..+|++.+ +.+++++|+||++||++|+.+.+.+.++++.+.+ ++.++.+|++.+ ++ .+++|.++|++++
T Consensus 36 ~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 36 EVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 46667888999876 5689999999999999999999999999999887 799999999998 66 4899999999999
Q ss_pred EeCCCCcCceEeeCCCCHHHHHHHHHHHc
Q 024107 221 YPAGDKANPIKVSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 249 (272)
|++|+... ++.|..+.+.|.+||++.+
T Consensus 113 ~~~G~~v~--~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 113 FKNGQVVD--MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EECCEEEE--EEcCCCCHHHHHHHHHHhC
Confidence 99887654 7899999999999998763
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.70 E-value=1.8e-16 Score=112.21 Aligned_cols=98 Identities=26% Similarity=0.604 Sum_probs=86.4
Q ss_pred cccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCC
Q 024107 148 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD 225 (272)
Q Consensus 148 ~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~ 225 (272)
+.++|.+.+.+.+++++|+||++||+.|+.+.+.+.+++..+.+ ++.++.+|++.+ .+ .++++.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 56778888876678999999999999999999999999999986 799999999998 55 489999999999999887
Q ss_pred CcCceEeeCCCCHHHHHHHHHHHc
Q 024107 226 KANPIKVSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i~~~~ 249 (272)
... ++.|..+.+.|.+||++.+
T Consensus 80 ~~~--~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVD--RSVGALPKAALKQLINKNL 101 (101)
T ss_pred Eee--eecCCCCHHHHHHHHHhhC
Confidence 654 6889999999999998764
No 43
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.69 E-value=1.8e-16 Score=112.93 Aligned_cols=99 Identities=23% Similarity=0.517 Sum_probs=85.0
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC--C-CC-CCCcccCCCeEE
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N-EH-PKLQVEEYPTLL 219 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~--~-~~-~~~~v~~~P~l~ 219 (272)
+..++..+|++.+ ..+++++|+||++||++|+.+.|.+..+++.+.....+.++.+|++. + .+ .++++.++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678888999877 45669999999999999999999999999999743379999999998 5 44 488999999999
Q ss_pred EEeCCCCcCceEeeCCCCHHHHHHHH
Q 024107 220 FYPAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 220 ~~~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
+|++|+... +|.|..+.+.|.+||
T Consensus 81 ~~~~g~~~~--~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVE--KYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeE--EeCCCCCHHHHHhhC
Confidence 999887543 799999999999885
No 44
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=1.4e-16 Score=114.46 Aligned_cols=102 Identities=21% Similarity=0.239 Sum_probs=88.6
Q ss_pred eEeeCcccccccc-cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEE
Q 024107 16 VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 93 (272)
Q Consensus 16 v~~l~~~~f~~~~-~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~ 93 (272)
+.++++.+|++.+ +++++++|.||++| ++|+++.|.|.++|+.+.+.+.|+.+||+...+ ..+|++|+|.++ ||+
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-~~~~~~~~i~~~-Pt~- 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-KPLCGKYGVQGF-PTL- 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-HHHHHHcCCCcC-CEE-
Confidence 5689999999976 55677999999999 999999999999999999889999999998322 799999999999 999
Q ss_pred EEEeCCc----ceeecCCCCCChHHHHHHHH
Q 024107 94 TAFDNKA----ISKFLLESDLTPSNIEEFCS 120 (272)
Q Consensus 94 ~~~~~~~----~~~~~~~g~~~~~~i~~fi~ 120 (272)
.++.+++ ...+.|.|.++.++|.+|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 8887775 24566799999999999973
No 45
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.69 E-value=1.8e-16 Score=114.49 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=88.3
Q ss_pred CCCceEeeCcccccccccCCcceEEEEEEcc--cc--hH--HHHHHHHHHHHHh--cCceEEEEEeCCCcccchhHHhhc
Q 024107 12 KFPLVTKLTDINSASVHSSPIKLQVYVFAKA--DD--LK--SLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLF 83 (272)
Q Consensus 12 s~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~--~~--c~--~~~~~~~~~a~~~--~~~i~~~~vd~~~~~~~~~l~~~~ 83 (272)
....+..+|++||++.+.++...+|.||.+| ++ |+ .+.|.+.++|.++ .+.+.|+.||++++ ++++++|
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~---~~La~~~ 83 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD---AKVAKKL 83 (120)
T ss_pred CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC---HHHHHHc
Confidence 4567889999999998766655555555555 55 99 8899999999998 77799999999999 8999999
Q ss_pred CCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHh
Q 024107 84 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 123 (272)
Q Consensus 84 ~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 123 (272)
||.++ ||+ ++|.+|... .+.|.++.+.|.+|+.+++
T Consensus 84 ~I~~i-PTl-~lfk~G~~v--~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 84 GLDEE-DSI-YVFKDDEVI--EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CCccc-cEE-EEEECCEEE--EeeCCCCHHHHHHHHHHHh
Confidence 99999 999 888877533 3689999999999999864
No 46
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.68 E-value=2.5e-16 Score=111.94 Aligned_cols=99 Identities=22% Similarity=0.183 Sum_probs=88.7
Q ss_pred eEeeCcccccccc-cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEE
Q 024107 16 VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 93 (272)
Q Consensus 16 v~~l~~~~f~~~~-~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~ 93 (272)
|.++++.+|.+.+ ..+.+++|+||++| ++|+++.|.|.++++.+.+.+.|+.+||+.+ +.+|++|||.++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~i~~~-P~~- 76 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH---QSLAQQYGVRGF-PTI- 76 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch---HHHHHHCCCCcc-CEE-
Confidence 5788999999876 44556999999999 9999999999999999998899999999998 899999999999 999
Q ss_pred EEEeCCcceeecCCCCCChHHHHHHH
Q 024107 94 TAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
.+++++....+.|.|.++.+.|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 78887755677789999999999996
No 47
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.68 E-value=3.5e-16 Score=110.90 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=85.1
Q ss_pred ceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 15 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 15 ~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
.|.++++++|++.+... ++|.||++| ++|+++.|.|.+++..+.+ .+.|+.+||+++ +.+|++|+|.++ ||+
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~---~~~~~~~~i~~~-Pt~ 75 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE---PGLSGRFFVTAL-PTI 75 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC---HhHHHHcCCccc-CEE
Confidence 47889999999987543 889999999 9999999999999998875 599999999998 899999999999 999
Q ss_pred EEEEeCCcceeecCCCCCChHHHHHHHH
Q 024107 93 VTAFDNKAISKFLLESDLTPSNIEEFCS 120 (272)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~i~~fi~ 120 (272)
.++.++.. ..+.|.++.++|.+|+.
T Consensus 76 -~~~~~g~~--~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 76 -YHAKDGVF--RRYQGPRDKEDLISFIE 100 (101)
T ss_pred -EEeCCCCE--EEecCCCCHHHHHHHHh
Confidence 77766643 45689999999999986
No 48
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.67 E-value=2.7e-16 Score=112.97 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=86.9
Q ss_pred ceEeeCcccccccc---cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhHHh-hcCCCCC
Q 024107 15 LVTKLTDINSASVH---SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLT-LFGLEES 88 (272)
Q Consensus 15 ~v~~l~~~~f~~~~---~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~~~~~~l~~-~~~i~~~ 88 (272)
.|.++++++|+.++ +++++++|.||++| ++|+++.|.|.++++.+.+. +.|+.|||+..+ ..+|. .+++.++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcC
Confidence 47889999999987 35689999999999 99999999999999999874 999999999732 57887 5999999
Q ss_pred CceEEEEEeCCcceeecCCCC-CChHHHHHHH
Q 024107 89 KNTVVTAFDNKAISKFLLESD-LTPSNIEEFC 119 (272)
Q Consensus 89 ~P~i~~~~~~~~~~~~~~~g~-~~~~~i~~fi 119 (272)
||+ .+|..+....+.|.|+ ++.++|..|+
T Consensus 80 -Pti-~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 -PTI-LFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred -CEE-EEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999 8888776566777885 8999999885
No 49
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.67 E-value=3.7e-16 Score=110.83 Aligned_cols=95 Identities=19% Similarity=0.400 Sum_probs=80.2
Q ss_pred cccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCcccCCCeEEEEeCCCC
Q 024107 148 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDK 226 (272)
Q Consensus 148 ~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~v~~~P~l~~~~~~~~ 226 (272)
+.++|.+.+ +++++++|+||++||++|+.+.|.+..++..+++. .+.|+.+|++..++ .+++|.++|++++|++|+.
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence 557788866 56889999999999999999999999999999752 48999999994455 4899999999999999986
Q ss_pred cCceEeeCCCCHHHHHHHHHH
Q 024107 227 ANPIKVSARSSSKNIAAFIKE 247 (272)
Q Consensus 227 ~~~~~~~g~~~~~~l~~~i~~ 247 (272)
.. +..|. +.+.|.++|.+
T Consensus 84 ~~--~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 VA--VIRGA-NAPLLNKTITE 101 (102)
T ss_pred EE--EEecC-ChHHHHHHHhh
Confidence 64 56674 88889988875
No 50
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.67 E-value=3.9e-16 Score=110.91 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=76.3
Q ss_pred ccchhHHhhcC-CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC----C-CCCcccCCCeEEEEe
Q 024107 149 GKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----H-PKLQVEEYPTLLFYP 222 (272)
Q Consensus 149 ~~~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~----~-~~~~v~~~P~l~~~~ 222 (272)
.++|++.+.+. +++++|.||++||++|+.+.|.+.++++.+ . ++.|+.+|++.+. + .+++|.++||+++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46778887644 889999999999999999999999999999 3 6999999998872 3 378999999999999
Q ss_pred CCCCcCceEeeCCCCHHHHHHHHH
Q 024107 223 AGDKANPIKVSARSSSKNIAAFIK 246 (272)
Q Consensus 223 ~~~~~~~~~~~g~~~~~~l~~~i~ 246 (272)
+|+... ++.|. ....|.+-+.
T Consensus 80 ~G~~v~--~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 80 DGEKIH--EEEGI-GPDELIGDVL 100 (103)
T ss_pred CCeEEE--EEeCC-CHHHHHHHHH
Confidence 987654 78885 4566666554
No 51
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.7e-16 Score=114.41 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=93.3
Q ss_pred CceEeeCcccccc-cccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCce
Q 024107 14 PLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 91 (272)
Q Consensus 14 ~~v~~l~~~~f~~-~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~ 91 (272)
..+..++..+|++ ++++..|++|.|+++| ++|+.+.|.+++++.++.+++.|+.||.+++ .+++.+|+|... ||
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~---~ela~~Y~I~av-Pt 118 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH---PELAEDYEISAV-PT 118 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc---cchHhhcceeee-eE
Confidence 3566778888888 5588899999999999 9999999999999999999999999999999 899999999999 99
Q ss_pred EEEEEeCCcceeecCCCCCChHHHHHHHHHHhc
Q 024107 92 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 92 i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
+ ++|.+|.. .-.+.|..+.+.+.++|+++++
T Consensus 119 v-lvfknGe~-~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 119 V-LVFKNGEK-VDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred E-EEEECCEE-eeeecccCCHHHHHHHHHHHhc
Confidence 9 88887753 3345889999999999999864
No 52
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.66 E-value=6.1e-16 Score=116.56 Aligned_cols=99 Identities=20% Similarity=0.395 Sum_probs=81.6
Q ss_pred ccCCCCCCCCCCeEEecccchhHHhhcC-CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-
Q 024107 132 KSQPIPDNTNANVQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP- 208 (272)
Q Consensus 132 ~~~~~~~~~~~~v~~l~~~~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~- 208 (272)
.+++.+.. ...+.+++.++|++.+... +++++|.||++||++|+.+.|.+.++++.+.+. ++.|+.||++.+ ++.
T Consensus 19 ~~~~~~~~-~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~ 96 (152)
T cd02962 19 APQPLYMG-PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAE 96 (152)
T ss_pred hCCCccCC-CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHH
Confidence 34444442 4578889999999987544 578999999999999999999999999999753 599999999999 664
Q ss_pred CCcccC------CCeEEEEeCCCCcCceEeeC
Q 024107 209 KLQVEE------YPTLLFYPAGDKANPIKVSA 234 (272)
Q Consensus 209 ~~~v~~------~P~l~~~~~~~~~~~~~~~g 234 (272)
+++|.+ +||+++|++|+... ++.|
T Consensus 97 ~~~V~~~~~v~~~PT~ilf~~Gk~v~--r~~G 126 (152)
T cd02962 97 KFRVSTSPLSKQLPTIILFQGGKEVA--RRPY 126 (152)
T ss_pred HcCceecCCcCCCCEEEEEECCEEEE--EEec
Confidence 788877 99999999998775 6664
No 53
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.66 E-value=8.1e-16 Score=108.62 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=83.9
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCC--ChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEE
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPW--CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL 219 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~--C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~ 219 (272)
+..++..+|++.+ ..+..++|+||++| |+.|+.+.|.+.++++++.+ .+.|+.+|++.+ ++. +|+|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 4568999999877 77899999999997 99999999999999999987 799999999999 774 99999999999
Q ss_pred EEeCCCCcCceEeeCCCCHHHHH
Q 024107 220 FYPAGDKANPIKVSARSSSKNIA 242 (272)
Q Consensus 220 ~~~~~~~~~~~~~~g~~~~~~l~ 242 (272)
+|++|+.+. ++.|..+.+.|.
T Consensus 89 ~fkdGk~v~--~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVG--VLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEE--EEeCccCHHHHh
Confidence 999998765 788988877664
No 54
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.66 E-value=6.2e-16 Score=111.81 Aligned_cols=89 Identities=24% Similarity=0.389 Sum_probs=77.3
Q ss_pred CCeEEecccchhHHhhcC--CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCC-CCcccCCCeE
Q 024107 142 ANVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQVEEYPTL 218 (272)
Q Consensus 142 ~~v~~l~~~~~~~~v~~~--~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~-~~~v~~~P~l 218 (272)
+.+..++.++|.+.+.+. +++++|+||+|||++|+.+.|.+++++..+. ++.|+.+|++.++++ +++|.++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhhHHHHhcCCCcCCEE
Confidence 457889999999998665 3899999999999999999999999999986 589999999987554 8899999999
Q ss_pred EEEeCCCCcCceEeeCC
Q 024107 219 LFYPAGDKANPIKVSAR 235 (272)
Q Consensus 219 ~~~~~~~~~~~~~~~g~ 235 (272)
++|++|+.+. ++.|.
T Consensus 81 ~~f~~G~~v~--~~~G~ 95 (113)
T cd02957 81 LVYKNGELID--NIVGF 95 (113)
T ss_pred EEEECCEEEE--EEecH
Confidence 9999998765 66663
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.66 E-value=9.5e-16 Score=134.33 Aligned_cols=106 Identities=26% Similarity=0.580 Sum_probs=92.1
Q ss_pred CCCeEEecccchhHHhh--cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC-CC-CCC--CCcccC
Q 024107 141 NANVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EHP--KLQVEE 214 (272)
Q Consensus 141 ~~~v~~l~~~~~~~~v~--~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~-~~-~~~--~~~v~~ 214 (272)
...+..++.++|++.+. +.+++++|+||+|||++|+.+.|.|.+++..+.+. ++.|+.+|++ .+ +++ +++|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence 44788899999999874 56889999999999999999999999999999764 5999999999 54 554 589999
Q ss_pred CCeEEEEeCCCCcCceEeeC-CCCHHHHHHHHHHH
Q 024107 215 YPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIKEQ 248 (272)
Q Consensus 215 ~P~l~~~~~~~~~~~~~~~g-~~~~~~l~~~i~~~ 248 (272)
+||+++|++|... ++.|.| ..+.++|+.||++.
T Consensus 423 ~PTil~f~~g~~~-~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSR-PIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCC-eeecCCCCcCHHHHHHHHHHh
Confidence 9999999988765 678985 69999999999864
No 56
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.65 E-value=1.4e-15 Score=133.37 Aligned_cols=106 Identities=25% Similarity=0.551 Sum_probs=91.2
Q ss_pred CCCCeEEecccchhHHhh--cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC--C--CCCccc
Q 024107 140 TNANVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H--PKLQVE 213 (272)
Q Consensus 140 ~~~~v~~l~~~~~~~~v~--~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~--~--~~~~v~ 213 (272)
.+..|..++.++|++.+. +.+++++|.||+|||++|+.+.|.|.++|.++++. .+.|+.+|++.+. + .+++|.
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~ 427 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLG 427 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCC
Confidence 344688899999999884 46889999999999999999999999999999863 4899999998763 3 278999
Q ss_pred CCCeEEEEeCCCCcCceEee-CCCCHHHHHHHHHH
Q 024107 214 EYPTLLFYPAGDKANPIKVS-ARSSSKNIAAFIKE 247 (272)
Q Consensus 214 ~~P~l~~~~~~~~~~~~~~~-g~~~~~~l~~~i~~ 247 (272)
++||+++|++|... ++.|. |..+.+.|+.||+.
T Consensus 428 ~~PTii~Fk~g~~~-~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 SFPTILFFPKHSSR-PIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ccceEEEEECCCCC-ceeCCCCCCCHHHHHHHHHh
Confidence 99999999999654 66897 57999999999985
No 57
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=122.24 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=92.8
Q ss_pred CCceEeeCcccccccccC-----CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCC
Q 024107 13 FPLVTKLTDINSASVHSS-----PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE 86 (272)
Q Consensus 13 ~~~v~~l~~~~f~~~~~~-----~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~ 86 (272)
.+.+.++++++|++.+.. +++++|.||++| ++|+++.|.|+++|+.+.+.+.|+.+||+.+ +++|++|+|.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~---~~l~~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA---LNLAKRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc---HHHHHHcCCC
Confidence 356899999999997642 478999999999 9999999999999999999899999999999 8999999999
Q ss_pred CCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhc
Q 024107 87 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 87 ~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
++ ||+ .+|+++....+ +.|.++.++|.+|+.+...
T Consensus 106 ~~-PTl-~~f~~G~~v~~-~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 106 GY-PTL-LLFDKGKMYQY-EGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cC-CEE-EEEECCEEEEe-eCCCCCHHHHHHHHHHHHH
Confidence 99 999 88886643333 3678999999999999764
No 58
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.64 E-value=2.7e-15 Score=108.50 Aligned_cols=101 Identities=23% Similarity=0.465 Sum_probs=81.5
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCC-ceEEEEEeCCCC---CC-CCCcccCCCe
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN---EH-PKLQVEEYPT 217 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~id~~~~---~~-~~~~v~~~P~ 217 (272)
++..++.++|++.+.+.+++++|.||++||++|+.+.+.|.+++..+++.. .+.++.+||+.. ++ .++++.++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 477899999999998878899999999999999999999999999987533 599999998653 34 3789999999
Q ss_pred EEEEeCCCCcCc--eEeeCC-CCHHHHHH
Q 024107 218 LLFYPAGDKANP--IKVSAR-SSSKNIAA 243 (272)
Q Consensus 218 l~~~~~~~~~~~--~~~~g~-~~~~~l~~ 243 (272)
+++|++|....+ ..|.|. +..+.+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 999999875432 245665 44555433
No 59
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.64 E-value=9.2e-16 Score=108.85 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=85.6
Q ss_pred eEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCce
Q 024107 16 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNT 91 (272)
Q Consensus 16 v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~ 91 (272)
+.++++++|++.+..+ +++|.||++| ++|+.+.|.|.++++.+.+ .+.|+.+||+.. ..+|++|+|.++ ||
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~-Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH---RELCSEFQVRGY-PT 76 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC---hhhHhhcCCCcC-CE
Confidence 5678999999988766 5999999999 9999999999999999986 699999999998 899999999999 99
Q ss_pred EEEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 92 VVTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 92 i~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
+ .++.++. ....+.|.++.+.|.+|+
T Consensus 77 ~-~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 L-LLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred E-EEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 9 7776654 445569999999998875
No 60
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.64 E-value=2.3e-15 Score=107.25 Aligned_cols=94 Identities=20% Similarity=0.443 Sum_probs=79.8
Q ss_pred cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCC-ceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCC
Q 024107 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK 226 (272)
Q Consensus 150 ~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~ 226 (272)
++|++. ..++.++|.||++||++|+.+.|.|.+++..+++.. .+.++.+|++.+ .+ .+++|.++|++++|++|.
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 667763 346799999999999999999999999999996432 599999999988 66 488999999999997653
Q ss_pred cCceEeeCCCCHHHHHHHHHHH
Q 024107 227 ANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 227 ~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
..++.|..+.+.|.+|+++.
T Consensus 84 --~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 --AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --ceeecCCCCHHHHHHHHHhh
Confidence 34799999999999999874
No 61
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.2e-15 Score=133.34 Aligned_cols=217 Identities=21% Similarity=0.275 Sum_probs=156.6
Q ss_pred hHHHHHhhcCCCc--------eEeeCcccccccc-cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhc--CceEEEEEeC
Q 024107 3 KILQFLNYNKFPL--------VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDI 70 (272)
Q Consensus 3 ~l~~fi~~~s~~~--------v~~l~~~~f~~~~-~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~--~~i~~~~vd~ 70 (272)
.+.+|+.....+. +.+++..+|.... .....++|.||+|| ++|+.+.|.|.++|..+. +.+.++.+||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 125 SLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred HHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 4555655544333 6666666777643 55678999999999 999999999999999996 5699999999
Q ss_pred CCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhcCcccc-ccccCCCCCCCCCCeEEecc
Q 024107 71 ADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTP-YLKSQPIPDNTNANVQIVVG 149 (272)
Q Consensus 71 ~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~ 149 (272)
+.. ..+|+++++..+ ||+ .+|..+....+.+.|.++.+.|.+|+.+.......+ .+.+-..+......+.+.
T Consensus 205 ~~~---~~~~~~~~v~~~-Pt~-~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-- 277 (383)
T KOG0191|consen 205 TVH---KSLASRLEVRGY-PTL-KLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDT-- 277 (383)
T ss_pred chH---HHHhhhhcccCC-ceE-EEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhh--
Confidence 977 899999999999 999 888877553455688999999999999987654211 111111111000011111
Q ss_pred cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHH-hcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCC
Q 024107 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDK 226 (272)
Q Consensus 150 ~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~-~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~ 226 (272)
..+.. ........++.|+++||..|....|.+...+.. +.....+.+..++|... .++ +..++.+|++.++..+..
T Consensus 278 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (383)
T KOG0191|consen 278 AEFLD-SLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGKN 356 (383)
T ss_pred hhhhh-hhHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEeeccccc
Confidence 11111 112345679999999999999999999999988 22222788999999888 543 668899999999988765
Q ss_pred c
Q 024107 227 A 227 (272)
Q Consensus 227 ~ 227 (272)
.
T Consensus 357 ~ 357 (383)
T KOG0191|consen 357 P 357 (383)
T ss_pred c
Confidence 4
No 62
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.64 E-value=1.4e-15 Score=107.90 Aligned_cols=98 Identities=26% Similarity=0.291 Sum_probs=88.7
Q ss_pred eCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC--ceEEEEEeCCCcccchhHHhhcCCCCCCceEEEE
Q 024107 19 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA 95 (272)
Q Consensus 19 l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~--~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~ 95 (272)
|++++|++.+.++++++|+||++| ++|+++.+.|.+++..+.+ .+.|+.+||+.+ +.+|++|+|.++ |++ .+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~i~~~-P~~-~~ 75 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE---KDLASRFGVSGF-PTI-KF 75 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch---HHHHHhCCCCcC-CEE-EE
Confidence 567889998888899999999999 9999999999999999997 699999999999 899999999999 999 78
Q ss_pred EeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 96 FDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 96 ~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
+++++. .+.+.|..+.+.|..|+.+.
T Consensus 76 ~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 887754 66679999999999999874
No 63
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.63 E-value=1.5e-15 Score=107.10 Aligned_cols=98 Identities=39% Similarity=0.766 Sum_probs=82.6
Q ss_pred EecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeC
Q 024107 146 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPA 223 (272)
Q Consensus 146 ~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~ 223 (272)
.++.++|.+.+.+ +++++|+||++||+.|+.+.+.|..++..+++...+.++.+|++.+ .+ .+++|.++|++++|++
T Consensus 2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 3577888888754 4499999999999999999999999999995222799999999997 55 4889999999999988
Q ss_pred CCCcCceEeeCCCCHHHHHHHH
Q 024107 224 GDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 224 ~~~~~~~~~~g~~~~~~l~~~i 245 (272)
++.. ..+|.|..+.+.|.+|+
T Consensus 81 ~~~~-~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKE-PVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcc-cccCCCCcCHHHHHhhC
Confidence 8422 44899999999999885
No 64
>PRK09381 trxA thioredoxin; Provisional
Probab=99.63 E-value=5.1e-15 Score=106.41 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=92.4
Q ss_pred CCceEeeCcccccc-cccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCc
Q 024107 13 FPLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN 90 (272)
Q Consensus 13 ~~~v~~l~~~~f~~-~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P 90 (272)
+..++++++++|.+ +...+++++|.||++| ++|+.+.|.|+++++.+.+.+.|+.+||+.. +.++++|++.++ |
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~-P 77 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYGIRGI-P 77 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC---hhHHHhCCCCcC-C
Confidence 56788999999987 4566789999999999 9999999999999999998899999999999 899999999999 9
Q ss_pred eEEEEEeCCcceeecCCCCCChHHHHHHHHHHh
Q 024107 91 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 123 (272)
Q Consensus 91 ~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 123 (272)
|+ .++.+++ ....+.|..+.+.|..|+...+
T Consensus 78 t~-~~~~~G~-~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TL-LLFKNGE-VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EE-EEEeCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence 99 7887554 4555688899999999998864
No 65
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.62 E-value=3.1e-15 Score=106.48 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=85.2
Q ss_pred eEeeCcccccccc-cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC--ceEEEEEeCCCcccchhHHhhcCCCCCCce
Q 024107 16 VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTLFGLEESKNT 91 (272)
Q Consensus 16 v~~l~~~~f~~~~-~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~--~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~ 91 (272)
|.+++..+|++.+ +.+++++|.||++| ++|+++.|.|.++++.+.+ .+.|+.+||+.. +++..+++.++ |+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~-Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGF-PT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCC-CE
Confidence 6789999999976 44589999999999 9999999999999999986 599999999987 68899999999 99
Q ss_pred EEEEEeCCc-ceeecCCCCCChHHHHHHH
Q 024107 92 VVTAFDNKA-ISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 92 i~~~~~~~~-~~~~~~~g~~~~~~i~~fi 119 (272)
+ .++.+++ .....|.|..+.+.|.+||
T Consensus 77 ~-~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 77 I-LFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred E-EEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9 7887665 3455679999999999885
No 66
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.62 E-value=4.4e-15 Score=107.07 Aligned_cols=98 Identities=22% Similarity=0.388 Sum_probs=80.2
Q ss_pred CCeEEecc-cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeE
Q 024107 142 ANVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTL 218 (272)
Q Consensus 142 ~~v~~l~~-~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l 218 (272)
+.+..+++ ++|.+.+ .++++++|+||+|||++|+.+.|.+.++++.+. ++.|++||++.+ ++. +++|..+||+
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence 34677777 7888887 456899999999999999999999999999886 589999999999 664 8999999999
Q ss_pred EEEeCCCCcCceEeeC--------CCCHHHHHHHH
Q 024107 219 LFYPAGDKANPIKVSA--------RSSSKNIAAFI 245 (272)
Q Consensus 219 ~~~~~~~~~~~~~~~g--------~~~~~~l~~~i 245 (272)
++|++|+.+. ++.| ..+.+++-.|+
T Consensus 80 l~fk~G~~v~--~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVD--RIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEE--EEECccccCCCCCCCHHHHHHHh
Confidence 9999998765 4444 24455555554
No 67
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.62 E-value=3.2e-15 Score=106.53 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=87.1
Q ss_pred eEeeCcccccccccC-CcceEEEEEEcc-cchHHHHHHHHHHHHHhc--CceEEEEEeCCC-cccchhHHhhcCCCCCCc
Q 024107 16 VTKLTDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIAD-EDLAKPFLTLFGLEESKN 90 (272)
Q Consensus 16 v~~l~~~~f~~~~~~-~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~--~~i~~~~vd~~~-~~~~~~l~~~~~i~~~~P 90 (272)
+.++++++|+..+.+ +++++|.||++| ++|+++.|.|.++++.+. +.+.|+.+||.. . +++|++|+|.++ |
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~~i~~~-P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN---KDLAKKYGVSGF-P 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc---hhhHHhCCCCCc-C
Confidence 567899999997754 458999999999 999999999999999997 469999999999 7 899999999999 9
Q ss_pred eEEEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 91 TVVTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 91 ~i~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
++ .++..++...+.+.|.++.+.|.+|+
T Consensus 78 ~~-~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TL-KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EE-EEEeCCCCCccccCCccCHHHHHhhC
Confidence 99 78876655667779999999999885
No 68
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.62 E-value=3.6e-15 Score=104.82 Aligned_cols=91 Identities=21% Similarity=0.377 Sum_probs=80.5
Q ss_pred hhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCc
Q 024107 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANP 229 (272)
Q Consensus 152 ~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~ 229 (272)
++..+...+++++++||++||+.|+.+.+.+.++++.+.+ ++.++.+|++.+ ++ .++++.++|++++|++|+.+.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~- 81 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK- 81 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE-
Confidence 4566677899999999999999999999999999999986 799999999988 66 488999999999999887654
Q ss_pred eEeeCCCCHHHHHHHHH
Q 024107 230 IKVSARSSSKNIAAFIK 246 (272)
Q Consensus 230 ~~~~g~~~~~~l~~~i~ 246 (272)
++.|..+.+.|.+||+
T Consensus 82 -~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 -EISGVKMKSEYREFIE 97 (97)
T ss_pred -EEeCCccHHHHHHhhC
Confidence 7899999999998874
No 69
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.1e-15 Score=106.47 Aligned_cols=84 Identities=26% Similarity=0.600 Sum_probs=71.3
Q ss_pred cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCC
Q 024107 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR 235 (272)
Q Consensus 158 ~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~ 235 (272)
..++.++|+|||+||++|+.+.|.+.++|.+|. ++.|+.+|+++. ++ .+++|..+||+.+|++|+... ++.|.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~--~~vGa 93 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD--EVVGA 93 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE--EEecC
Confidence 346899999999999999999999999999999 499999999996 44 388999999999999999875 67777
Q ss_pred CCHHHHHHHHHH
Q 024107 236 SSSKNIAAFIKE 247 (272)
Q Consensus 236 ~~~~~l~~~i~~ 247 (272)
.. ..|.+.|..
T Consensus 94 ~~-~~l~~~i~~ 104 (106)
T KOG0907|consen 94 NK-AELEKKIAK 104 (106)
T ss_pred CH-HHHHHHHHh
Confidence 44 366666554
No 70
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.59 E-value=5.3e-15 Score=104.34 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=74.3
Q ss_pred cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCC-CcccchhHHhhcCCCCCCceEEEEEeCCcceeecC
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 106 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~-~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~ 106 (272)
.++++++|.||++| ++|+.+.|.|+++++.+.+ +.|+.||++ .+ +.++++|+|.++ ||+ .+|+++ ....+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~---~~l~~~~~V~~~-PT~-~lf~~g--~~~~~ 87 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIK---PSLLSRYGVVGF-PTI-LLFNST--PRVRY 87 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCC---HHHHHhcCCeec-CEE-EEEcCC--ceeEe
Confidence 36789999999999 9999999999999999986 889999998 67 899999999999 999 888876 44556
Q ss_pred CCCCChHHHHHHH
Q 024107 107 ESDLTPSNIEEFC 119 (272)
Q Consensus 107 ~g~~~~~~i~~fi 119 (272)
.|.++.++|.+|+
T Consensus 88 ~G~~~~~~l~~f~ 100 (100)
T cd02999 88 NGTRTLDSLAAFY 100 (100)
T ss_pred cCCCCHHHHHhhC
Confidence 9999999999985
No 71
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.59 E-value=1e-14 Score=113.06 Aligned_cols=103 Identities=20% Similarity=0.352 Sum_probs=85.9
Q ss_pred CCCCeEEecc-cchhHHhhcCC--CcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCcccCC
Q 024107 140 TNANVQIVVG-KTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEY 215 (272)
Q Consensus 140 ~~~~v~~l~~-~~~~~~v~~~~--~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~v~~~ 215 (272)
..+.+..++. .+|.+.+...+ .+++|+||++||++|+.+.|.+..+|..+. .+.|+.||++...+ .+|++..+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~~l~~~f~v~~v 136 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASATGASDEFDTDAL 136 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccchhhHHhCCCCCC
Confidence 4567899999 99999986544 489999999999999999999999999985 69999999998755 48999999
Q ss_pred CeEEEEeCCCCcCceEeeC-------CCCHHHHHHHHHH
Q 024107 216 PTLLFYPAGDKANPIKVSA-------RSSSKNIAAFIKE 247 (272)
Q Consensus 216 P~l~~~~~~~~~~~~~~~g-------~~~~~~l~~~i~~ 247 (272)
||+++|++|+.+. ++.| ..+.+.|-.++.+
T Consensus 137 PTlllyk~G~~v~--~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 137 PALLVYKGGELIG--NFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CEEEEEECCEEEE--EEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999998765 3332 3566777777765
No 72
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.59 E-value=7.5e-15 Score=104.49 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=87.2
Q ss_pred eEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhc--CceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 16 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 16 v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~--~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
+.++++.+|...+..+++++|.||++| ++|+++.|.+.++++.+. +.+.++.+||+...+ ..+|+++||.++ ||+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~i~~~-Pt~ 79 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALKEEYNVKGF-PTF 79 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHHHhCCCccc-cEE
Confidence 678899999999988889999999999 999999999999999987 568999999998222 899999999999 999
Q ss_pred EEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 93 VTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
.++.++. ....+.|..+.+.+.+|+
T Consensus 80 -~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 -KYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred -EEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 7887664 355678999999998875
No 73
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.59 E-value=1.1e-14 Score=107.68 Aligned_cols=99 Identities=14% Similarity=0.255 Sum_probs=82.0
Q ss_pred cccchhHHhh-cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEE-EEeC
Q 024107 148 VGKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL-FYPA 223 (272)
Q Consensus 148 ~~~~~~~~v~-~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~-~~~~ 223 (272)
+..+|++.+. ..+++++|.||++||++|+.+.|.+.++|+++.+ .+.|+.||++++ ++. .|+|.+.|+++ +|++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 3467888886 4478999999999999999999999999999987 689999999999 774 88999776666 8898
Q ss_pred CC-CcCceEeeC--------CCCHHHHHHHHHHHcC
Q 024107 224 GD-KANPIKVSA--------RSSSKNIAAFIKEQLK 250 (272)
Q Consensus 224 ~~-~~~~~~~~g--------~~~~~~l~~~i~~~~~ 250 (272)
|+ .+. +..| ..+.+.|++-+...+.
T Consensus 88 g~~~vd--~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 88 KHIMID--LGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred CeEEEE--EecccccccccccCCHHHHHHHHHHHHH
Confidence 87 333 5667 5678888888887653
No 74
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.58 E-value=8.3e-15 Score=105.50 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=84.7
Q ss_pred ceEeeCcccccc-cc--cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCCCCCC
Q 024107 15 LVTKLTDINSAS-VH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESK 89 (272)
Q Consensus 15 ~v~~l~~~~f~~-~~--~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i~~~~ 89 (272)
+-..++..+|.+ ++ ..+++++|.||++| ++|+.+.|.|.++++.+.+ ++.|+.|||+.. +.+++++||.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~---~~l~~~~~V~~~- 80 (111)
T cd02963 5 YKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE---RRLARKLGAHSV- 80 (111)
T ss_pred hhheeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc---HHHHHHcCCccC-
Confidence 334557777865 43 36789999999999 9999999999999999986 499999999998 899999999999
Q ss_pred ceEEEEEeCCcceeecCCCCCChHHHHHHHHH
Q 024107 90 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 90 P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 121 (272)
||+ .++.+++ ....+.|..+.+.|.+|+.+
T Consensus 81 Pt~-~i~~~g~-~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 81 PAI-VGIINGQ-VTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CEE-EEEECCE-EEEEecCCCCHHHHHHHHhc
Confidence 999 7887664 34445788999999999875
No 75
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.58 E-value=1e-14 Score=102.49 Aligned_cols=92 Identities=25% Similarity=0.513 Sum_probs=75.6
Q ss_pred ccchhHHhhcC-CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCC
Q 024107 149 GKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD 225 (272)
Q Consensus 149 ~~~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~ 225 (272)
.++|++.+... ++.++|.||++||++|+.+.+.+.+++..+.. .+.++.+|++.. ++ .++++.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 35677777554 68999999999999999999999999999744 799999999988 66 489999999999999887
Q ss_pred CcCceEeeCCCCHHHHHHHH
Q 024107 226 KANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i 245 (272)
.+. ++.|. +.+.|.+.|
T Consensus 80 ~~~--~~~g~-~~~~l~~~~ 96 (97)
T cd02984 80 IVD--RVSGA-DPKELAKKV 96 (97)
T ss_pred EEE--EEeCC-CHHHHHHhh
Confidence 553 55664 567776655
No 76
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.58 E-value=1.4e-14 Score=102.97 Aligned_cols=96 Identities=27% Similarity=0.453 Sum_probs=82.6
Q ss_pred ccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCC--CCCceEEEEEeC
Q 024107 22 INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE--ESKNTVVTAFDN 98 (272)
Q Consensus 22 ~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~--~~~P~i~~~~~~ 98 (272)
+++......++++++.|+++| ++|+.+.+.+.++|+++++++.|+.||++++ +.+++.||+. +. |++ ++++.
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~---~~~~~~~~i~~~~~-P~~-~~~~~ 77 (103)
T cd02982 3 ETFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF---GRHLEYFGLKEEDL-PVI-AIINL 77 (103)
T ss_pred hHHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh---HHHHHHcCCChhhC-CEE-EEEec
Confidence 344444444678999999999 9999999999999999999999999999998 8999999999 88 999 88887
Q ss_pred CcceeecCCCC-CChHHHHHHHHHH
Q 024107 99 KAISKFLLESD-LTPSNIEEFCSRL 122 (272)
Q Consensus 99 ~~~~~~~~~g~-~~~~~i~~fi~~~ 122 (272)
.++.+|.+.++ .+.++|.+|+.++
T Consensus 78 ~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 78 SDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred ccccccCCCccccCHHHHHHHHHhh
Confidence 55567766554 5999999999886
No 77
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.58 E-value=1.5e-14 Score=104.39 Aligned_cols=90 Identities=23% Similarity=0.369 Sum_probs=78.9
Q ss_pred cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCC
Q 024107 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR 235 (272)
Q Consensus 158 ~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~ 235 (272)
..+..++|+||++||++|+.+.+.+.+++..+ + .+.+..+|.+.+ ++ .++++.++|++++|++|+....+++.|.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~ 96 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGL 96 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence 34667899999999999999999999999886 3 699999999988 66 4899999999999998876666789999
Q ss_pred CCHHHHHHHHHHHcC
Q 024107 236 SSSKNIAAFIKEQLK 250 (272)
Q Consensus 236 ~~~~~l~~~i~~~~~ 250 (272)
.+...|.+||...+.
T Consensus 97 ~~~~el~~~i~~i~~ 111 (113)
T cd02975 97 PAGYEFASLIEDIVR 111 (113)
T ss_pred CchHHHHHHHHHHHh
Confidence 999999999998764
No 78
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.57 E-value=3.8e-14 Score=106.44 Aligned_cols=98 Identities=14% Similarity=0.399 Sum_probs=81.4
Q ss_pred cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC---C-CCCcccCCCeEEEEe-CC
Q 024107 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---H-PKLQVEEYPTLLFYP-AG 224 (272)
Q Consensus 150 ~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~---~-~~~~v~~~P~l~~~~-~~ 224 (272)
..|++.+ ..+++++|+||++||++|+.+.|.+.++++.+.+ ++.|+.+|++... + .+++|.++|++++|. +|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 4566644 6788999999999999999999999999999986 6788888887652 2 488999999999995 56
Q ss_pred CCcCceEeeCCCCHHHHHHHHHHHcCcC
Q 024107 225 DKANPIKVSARSSSKNIAAFIKEQLKEK 252 (272)
Q Consensus 225 ~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 252 (272)
+.+. ++.|..+.+.|.++|.+.+...
T Consensus 88 ~~v~--~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEG--QSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEE--EEeCCCCHHHHHHHHHHHHcCC
Confidence 5543 7889999999999999988543
No 79
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.57 E-value=1.9e-14 Score=100.91 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=78.3
Q ss_pred cccccc-cC-CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCC
Q 024107 23 NSASVH-SS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 99 (272)
Q Consensus 23 ~f~~~~-~~-~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~ 99 (272)
+|++.+ +. +++++|.||++| ++|+.+.|.+.+++..+.+.+.|+.|||+.. +.++++|+|.++ |++ .++.++
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~l~~~~~i~~~-Pt~-~~~~~g 76 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ---PQIAQQFGVQAL-PTV-YLFAAG 76 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC---HHHHHHcCCCCC-CEE-EEEeCC
Confidence 566655 33 579999999999 9999999999999999998899999999999 899999999999 999 788755
Q ss_pred cceeecCCCCCChHHHHHHH
Q 024107 100 AISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 100 ~~~~~~~~g~~~~~~i~~fi 119 (272)
. ....+.|..+.+.|..|+
T Consensus 77 ~-~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 77 Q-PVDGFQGAQPEEQLRQML 95 (96)
T ss_pred E-EeeeecCCCCHHHHHHHh
Confidence 3 333468889999999886
No 80
>PRK10996 thioredoxin 2; Provisional
Probab=99.57 E-value=2.1e-14 Score=107.54 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=91.0
Q ss_pred ceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEE
Q 024107 15 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 93 (272)
Q Consensus 15 ~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~ 93 (272)
.+..++..+|++.+..+++++|.||++| ++|+++.|.|.++++.+.+.+.|+.+|++.. ++++++|+|.++ |++
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~---~~l~~~~~V~~~-Ptl- 110 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE---RELSARFRIRSI-PTI- 110 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC---HHHHHhcCCCcc-CEE-
Confidence 3556889999999888999999999999 9999999999999999998899999999998 899999999999 999
Q ss_pred EEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 94 TAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
+++.+++ ....+.|..+.+.|.+|+.+.
T Consensus 111 ii~~~G~-~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 111 MIFKNGQ-VVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEECCE-EEEEEcCCCCHHHHHHHHHHh
Confidence 7887654 344558889999999999875
No 81
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.57 E-value=2.6e-14 Score=100.84 Aligned_cols=95 Identities=13% Similarity=0.209 Sum_probs=76.2
Q ss_pred cchhHHhhcC-CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCC
Q 024107 150 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDK 226 (272)
Q Consensus 150 ~~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~ 226 (272)
+.+++.+.+. +++++|.|+++||++|+.+.|.+.++|.++.+ .+.|+.+|+++. ++. +++|.+.||+++|++|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 4566666544 89999999999999999999999999999975 499999999999 774 889999999999999987
Q ss_pred cCceEee--------CC-CCHHHHHHHHHH
Q 024107 227 ANPIKVS--------AR-SSSKNIAAFIKE 247 (272)
Q Consensus 227 ~~~~~~~--------g~-~~~~~l~~~i~~ 247 (272)
+ .+.+. +. .+.++++..|.-
T Consensus 81 ~-~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 81 M-KVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred E-EEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 6 33332 22 344666666553
No 82
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.57 E-value=1.1e-14 Score=102.58 Aligned_cols=97 Identities=23% Similarity=0.307 Sum_probs=86.0
Q ss_pred eeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHh--cCceEEEEEeCCCcccchhHHhhcCCCCCCceEEE
Q 024107 18 KLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT 94 (272)
Q Consensus 18 ~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~--~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~ 94 (272)
++++.+|.+.+.++++++|+||++| ++|+++.+.|.++++.+ .+.+.|+.+||+.+ ..+|++|+|.++ |++ .
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~i~~~-Pt~-~ 76 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN---NDLCSEYGVRGY-PTI-K 76 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch---HHHHHhCCCCCC-CEE-E
Confidence 5678889998888889999999999 99999999999999999 57799999999998 899999999999 999 7
Q ss_pred EEeCCcceeecCCCCCChHHHHHHH
Q 024107 95 AFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 95 ~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
++.+++.....|.|..+.+.+.+|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCcCHHHHHhhC
Confidence 8876644556668889999998874
No 83
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-14 Score=116.97 Aligned_cols=106 Identities=24% Similarity=0.346 Sum_probs=92.0
Q ss_pred CCceEeeCcccccccc---cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 024107 13 FPLVTKLTDINSASVH---SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 88 (272)
Q Consensus 13 ~~~v~~l~~~~f~~~~---~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~ 88 (272)
.+.+.++|+.||.+.+ +..+|++|+||+|| ++|+++.|.+++++..+.|++.+++|||+.+ +.++..|||.+.
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~---p~vAaqfgiqsI 98 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE---PMVAAQFGVQSI 98 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc---hhHHHHhCcCcC
Confidence 3458899999999955 34469999999999 9999999999999999999999999999999 999999999999
Q ss_pred CceEEEEEeCCc-ceeecCCCCCChHHHHHHHHHHhcC
Q 024107 89 KNTVVTAFDNKA-ISKFLLESDLTPSNIEEFCSRLLHG 125 (272)
Q Consensus 89 ~P~i~~~~~~~~-~~~~~~~g~~~~~~i~~fi~~~~~~ 125 (272)
||+ ..|..|+ ... |.|....+.|.+|+.++++.
T Consensus 99 -PtV-~af~dGqpVdg--F~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 -PTV-YAFKDGQPVDG--FQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred -CeE-EEeeCCcCccc--cCCCCcHHHHHHHHHHhcCh
Confidence 999 5555443 333 47888889999999999764
No 84
>PTZ00062 glutaredoxin; Provisional
Probab=99.56 E-value=7.6e-14 Score=109.96 Aligned_cols=161 Identities=16% Similarity=0.235 Sum_probs=111.5
Q ss_pred CcccccccccCC-cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEe
Q 024107 20 TDINSASVHSSP-IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 97 (272)
Q Consensus 20 ~~~~f~~~~~~~-~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~ 97 (272)
+.+++.++++++ ...+++|+++| ++|+++.+++.++++++.+ +.|+.||.+ |+|.+. |++ .+|.
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v-Ptf-v~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY-GVF-EFYQ 70 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc-eEE-EEEE
Confidence 345566666543 56788899999 9999999999999999976 999999866 789999 999 7888
Q ss_pred CCcceeecCCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHhhcCCCcEEEEEE----CCCCh
Q 024107 98 NKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVY----TPWCV 173 (272)
Q Consensus 98 ~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~~lv~f~----~~~C~ 173 (272)
+++... ++. +.++..+.+++..+..... . .-..+...+++ ..++++|+.- .|+|+
T Consensus 71 ~g~~i~-r~~-G~~~~~~~~~~~~~~~~~~--------~---------~~~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~ 129 (204)
T PTZ00062 71 NSQLIN-SLE-GCNTSTLVSFIRGWAQKGS--------S---------EDTVEKIERLI--RNHKILLFMKGSKTFPFCR 129 (204)
T ss_pred CCEEEe-eee-CCCHHHHHHHHHHHcCCCC--------H---------HHHHHHHHHHH--hcCCEEEEEccCCCCCCCh
Confidence 775422 234 4568899999988754210 0 00112233333 3455555544 37999
Q ss_pred hHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----C-CcccCCCeEEEEeCCC
Q 024107 174 TCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----K-LQVEEYPTLLFYPAGD 225 (272)
Q Consensus 174 ~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~----~-~~v~~~P~l~~~~~~~ 225 (272)
+|+.+...+.+. ++.+..+|+..+ +.. + -+..++|.++ -+|+
T Consensus 130 ~C~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~ 177 (204)
T PTZ00062 130 FSNAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGE 177 (204)
T ss_pred hHHHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 999988887754 577778888876 332 1 2566788874 4554
No 85
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.56 E-value=5.7e-15 Score=118.98 Aligned_cols=115 Identities=22% Similarity=0.427 Sum_probs=95.4
Q ss_pred cccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCC---CceEEEEEeCCCC-CCC-CCcccCCCeEEEEe
Q 024107 148 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL---DNLVIAKIDASAN-EHP-KLQVEEYPTLLFYP 222 (272)
Q Consensus 148 ~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~---~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~ 222 (272)
+..+++..+ +++..++|.|||.||..++.++|++.++|..++.. .++.+|.|||+.. .+. +|.|+.|||+.+|.
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 456777765 56889999999999999999999999999988532 2899999999999 675 99999999999999
Q ss_pred CCCCcCceEeeCCCCHHHHHHHHHHHcCcCCC--CCcchhcccc
Q 024107 223 AGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ--SPKDEQWKEK 264 (272)
Q Consensus 223 ~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~--~~~~e~~~~~ 264 (272)
+|..... .|.|.++.+.|.+||++++..+.+ .+.++++..+
T Consensus 81 nG~~~~r-EYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~ 123 (375)
T KOG0912|consen 81 NGEMMKR-EYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLD 123 (375)
T ss_pred ccchhhh-hhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhh
Confidence 9987642 699999999999999999887643 3444444333
No 86
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=1.9e-14 Score=102.51 Aligned_cols=91 Identities=21% Similarity=0.458 Sum_probs=75.1
Q ss_pred chhHHhhcCCCcEEEEEECCCChhHHHhHHHH---HHHHHHhcCCCceEEEEEeCCCC-----CC-CCCcccCCCeEEEE
Q 024107 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN-----EH-PKLQVEEYPTLLFY 221 (272)
Q Consensus 151 ~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~id~~~~-----~~-~~~~v~~~P~l~~~ 221 (272)
.|.+.+ ..+++++|+||++||++|+.+.+.+ .+++..+.+ ++.++.+|++.+ ++ .++++.++|++++|
T Consensus 3 ~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 3 ALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 455554 5689999999999999999999888 578888876 799999999874 23 37899999999999
Q ss_pred eC--CCCcCceEeeCCCCHHHHHHHHH
Q 024107 222 PA--GDKANPIKVSARSSSKNIAAFIK 246 (272)
Q Consensus 222 ~~--~~~~~~~~~~g~~~~~~l~~~i~ 246 (272)
+. |+. ..++.|..+.+.|.++|+
T Consensus 80 ~~~~g~~--~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPE--PLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCC--CcccccccCHHHHHHHhC
Confidence 84 444 448999999999998873
No 87
>PTZ00051 thioredoxin; Provisional
Probab=99.54 E-value=4.4e-14 Score=99.44 Aligned_cols=92 Identities=22% Similarity=0.494 Sum_probs=74.7
Q ss_pred eEEecc-cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEE
Q 024107 144 VQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 220 (272)
Q Consensus 144 v~~l~~-~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~ 220 (272)
+..+++ ++|.+. .+.++.++++||++||++|+.+.+.+..++..+. ++.++.+|++.+ .+ .++++.++|++++
T Consensus 2 v~~i~~~~~~~~~-~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFEST-LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHH-HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 345555 456665 4678899999999999999999999999999876 589999999988 55 4899999999999
Q ss_pred EeCCCCcCceEeeCCCCHHHHH
Q 024107 221 YPAGDKANPIKVSARSSSKNIA 242 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l~ 242 (272)
|++|+... ++.|. ..+.|.
T Consensus 78 ~~~g~~~~--~~~G~-~~~~~~ 96 (98)
T PTZ00051 78 FKNGSVVD--TLLGA-NDEALK 96 (98)
T ss_pred EeCCeEEE--EEeCC-CHHHhh
Confidence 99988764 67775 445543
No 88
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.53 E-value=5e-14 Score=123.63 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=91.1
Q ss_pred CCCceEeeCccccccccc---CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhHH-hhcCC
Q 024107 12 KFPLVTKLTDINSASVHS---SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFL-TLFGL 85 (272)
Q Consensus 12 s~~~v~~l~~~~f~~~~~---~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~~~~~~l~-~~~~i 85 (272)
..+.|.+|++.||+.++. .+++++|.||++| ++|+.+.|.|.++|+++.+. +.|+.|||+.+. ..++ ++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCC
Confidence 456899999999999875 7789999999999 99999999999999999875 899999999752 2454 78999
Q ss_pred CCCCceEEEEEeCCcceeecCC-CCCChHHHHHHHHHH
Q 024107 86 EESKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRL 122 (272)
Q Consensus 86 ~~~~P~i~~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~ 122 (272)
.++ ||+ ++|.++......|. |.++.++|..|++..
T Consensus 427 ~~~-PTi-i~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSF-PTI-LFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred Ccc-ceE-EEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999 999 88887754555566 589999999999753
No 89
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.53 E-value=1.5e-12 Score=102.39 Aligned_cols=173 Identities=18% Similarity=0.339 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCC-CChHHHHHHHHHHhcC
Q 024107 47 SLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHG 125 (272)
Q Consensus 47 ~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~ 125 (272)
.....|.++|+.+.+.+.|+.+. . .++++.+|+.. |++ .++.........|.|. .+.+.|.+|+....-+
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~---~~~~~~~~~~~--p~i-~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P 77 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---N---EELAKKYGIKE--PTI-VVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP 77 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS--SEE-EEEECTTTSEEEESSSTTSHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---H---HHHHHHhCCCC--CcE-EEeccCCCCceecccccCCHHHHHHHHHHhccc
Confidence 35678999999999889999877 3 57999999888 999 7887755556667887 8999999999997432
Q ss_pred ccccccccCCCCCCCCCCeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 126 TLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
.+..++..++..+.......++++|..........+...+..+|+.+++ ++.|+.+|++..
T Consensus 78 -----------------~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~ 138 (184)
T PF13848_consen 78 -----------------LVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDF 138 (184)
T ss_dssp -----------------SCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTT
T ss_pred -----------------cccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHh
Confidence 4888999999997643333478888877788889999999999999998 899999999976
Q ss_pred -CC-CCCccc--CCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHH
Q 024107 206 -EH-PKLQVE--EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 247 (272)
Q Consensus 206 -~~-~~~~v~--~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 247 (272)
.. ..++++ .+|+++++..........+.|..+.+.|.+|+++
T Consensus 139 ~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 139 PRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 43 466776 8999999984443322224788999999999974
No 90
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.53 E-value=4.6e-14 Score=110.82 Aligned_cols=102 Identities=17% Similarity=0.295 Sum_probs=84.9
Q ss_pred CCCCeEEecccchhHHhhcCC--CcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCe
Q 024107 140 TNANVQIVVGKTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT 217 (272)
Q Consensus 140 ~~~~v~~l~~~~~~~~v~~~~--~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~ 217 (272)
..+.+..++..+|...+...+ .+++|+||++||++|+.+.+.|..+|.++. .++|+.||++.. +..|++..+||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~-~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC-IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HhhCCCCCCCE
Confidence 456899999999998876553 589999999999999999999999999986 589999999864 46899999999
Q ss_pred EEEEeCCCCcCceEeeC-------CCCHHHHHHHHHH
Q 024107 218 LLFYPAGDKANPIKVSA-------RSSSKNIAAFIKE 247 (272)
Q Consensus 218 l~~~~~~~~~~~~~~~g-------~~~~~~l~~~i~~ 247 (272)
+++|++|..+. ++.| ..+.++|-.++.+
T Consensus 156 lliyk~G~~v~--~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 156 ILVYRNGDIVK--QFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEECCEEEE--EEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999998775 4544 3566777766654
No 91
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.53 E-value=7.8e-14 Score=99.29 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=79.8
Q ss_pred ccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEe
Q 024107 22 INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 97 (272)
Q Consensus 22 ~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~ 97 (272)
++|++. .++++++|.||++| ++|+.+.|.|.++++.+++ .+.++.+||+.. +.+|++++|.++ ||+ .++.
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~I~~~-Pt~-~l~~ 80 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY---SSIASEFGVRGY-PTI-KLLK 80 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC---HhHHhhcCCccc-cEE-EEEc
Confidence 467664 45669999999999 9999999999999999853 499999999998 899999999999 999 7886
Q ss_pred CCcceeecCCCCCChHHHHHHHHHH
Q 024107 98 NKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 98 ~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
++. .+.+.|..+.+.|.+|+++.
T Consensus 81 ~~~--~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDL--AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CCC--ceeecCCCCHHHHHHHHHhh
Confidence 553 34568999999999999874
No 92
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=8.5e-14 Score=121.37 Aligned_cols=220 Identities=16% Similarity=0.175 Sum_probs=144.8
Q ss_pred CceEeeCcccccccc-cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHhhcCCCCC
Q 024107 14 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEES 88 (272)
Q Consensus 14 ~~v~~l~~~~f~~~~-~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~~~~~l~~~~~i~~~ 88 (272)
+.+++|+.++|...+ ++.+..+|.||++| ++|..++|+|+++|+++.+ -+.++.|||.+..| ..+|++|+|.+|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef~V~~~ 117 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREFSVSGY 117 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhcCCCCC
Confidence 578999999999955 66668999999999 9999999999999999874 59999999998877 799999999999
Q ss_pred CceEEEEEeCCcce---eecCCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccc----hhHHhhcCCC
Q 024107 89 KNTVVTAFDNKAIS---KFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKT----FDDLVLNSHK 161 (272)
Q Consensus 89 ~P~i~~~~~~~~~~---~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~v~~~~~ 161 (272)
|++ ++|..+... .-.+.|.....++...+.+.+.... ..+..| +.+ ..-.+.+.+ .++.+.+...
T Consensus 118 -Ptl-ryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~----~~~~~~-~WP-~f~pl~~~~~~~~l~~~~~~~~~ 189 (606)
T KOG1731|consen 118 -PTL-RYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED----AQNRYP-SWP-NFDPLKDTTTLEELDEGISTTAN 189 (606)
T ss_pred -cee-eecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH----hhhcCC-CCC-CCCCCCCcchHHHHhcccccccc
Confidence 999 899765322 1223566667777777776654221 111111 111 111222222 2222222233
Q ss_pred cEEEEEE-CCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCCCCcccCCCeEEEEeCCCCcCceEeeCCCCHH
Q 024107 162 DVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSK 239 (272)
Q Consensus 162 ~~lv~f~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~ 239 (272)
.+-+.|- .+. .--+..+-..+... .+.+.++-+..+ ...+++++..|+.++|++|... + .+....+.+
T Consensus 190 yvAiv~e~~~s-------~lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q-~-l~~~~~s~~ 259 (606)
T KOG1731|consen 190 YVAIVFETEPS-------DLGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ-P-LWPSSSSRS 259 (606)
T ss_pred eeEEEEecCCc-------ccHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCccc-c-cccccccHH
Confidence 4555552 222 11345555555443 455555555554 5556899999999999999765 2 344455666
Q ss_pred HHHHHHHHHcCcC
Q 024107 240 NIAAFIKEQLKEK 252 (272)
Q Consensus 240 ~l~~~i~~~~~~~ 252 (272)
...+-|.+.++..
T Consensus 260 ~y~~~I~~~lg~~ 272 (606)
T KOG1731|consen 260 AYVKKIDDLLGDK 272 (606)
T ss_pred HHHHHHHHHhcCc
Confidence 7777777777654
No 93
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.51 E-value=1.8e-13 Score=99.87 Aligned_cols=97 Identities=10% Similarity=0.184 Sum_probs=77.4
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC---CC----------C
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---HP----------K 209 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~---~~----------~ 209 (272)
.+..++.+.+.+.+ .+++.++|+|+++||++|+.+.|.+.+++++. ++.++.+|.+.+. .. .
T Consensus 7 ~~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 35667888888876 56788999999999999999999999999983 5678888887542 11 2
Q ss_pred C----cccCCCeEEEEeCCCCcCceEeeC-CCCHHHHHHHHH
Q 024107 210 L----QVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIK 246 (272)
Q Consensus 210 ~----~v~~~P~l~~~~~~~~~~~~~~~g-~~~~~~l~~~i~ 246 (272)
+ ++.++||+++|++|+.+. +..| ..+.+.|.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~--~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVS--VRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEE--EEeCCCCCHHHHHHHhh
Confidence 3 466799999999999875 6777 567899998874
No 94
>PLN02309 5'-adenylylsulfate reductase
Probab=99.51 E-value=1e-13 Score=121.62 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=91.6
Q ss_pred CCCceEeeCcccccccc---cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCC-CcccchhHHh-hcC
Q 024107 12 KFPLVTKLTDINSASVH---SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA-DEDLAKPFLT-LFG 84 (272)
Q Consensus 12 s~~~v~~l~~~~f~~~~---~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~-~~~~~~~l~~-~~~ 84 (272)
..+.|.+|+.++|++++ ..+++++|.||++| ++|+.+.|.|.++|+.+.+. +.|+.+||+ .. ..+|+ +|+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~---~~la~~~~~ 419 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ---KEFAKQELQ 419 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc---hHHHHhhCC
Confidence 45678999999999876 47789999999999 99999999999999999864 999999999 66 78996 699
Q ss_pred CCCCCceEEEEEeCCcceeecCCC-CCChHHHHHHHHHH
Q 024107 85 LEESKNTVVTAFDNKAISKFLLES-DLTPSNIEEFCSRL 122 (272)
Q Consensus 85 i~~~~P~i~~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~ 122 (272)
|.++ ||| .+|..+......|.| .++.++|..|++..
T Consensus 420 I~~~-PTi-l~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 LGSF-PTI-LLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred Ccee-eEE-EEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999 999 888766555556664 69999999999874
No 95
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.50 E-value=1.6e-14 Score=116.33 Aligned_cols=91 Identities=16% Similarity=0.444 Sum_probs=81.2
Q ss_pred cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCC-ceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCCcCceEeeC
Q 024107 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSA 234 (272)
Q Consensus 158 ~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~~~~~~~~g 234 (272)
.+...++|.||+|||.+|+.+.|+|.+++..++..+ -++++.+||... .++ +++|++|||+.+|+++... .|.|
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~---dYRG 117 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI---DYRG 117 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee---ecCC
Confidence 346789999999999999999999999999998765 599999999999 665 9999999999999998754 6999
Q ss_pred CCCHHHHHHHHHHHcCc
Q 024107 235 RSSSKNIAAFIKEQLKE 251 (272)
Q Consensus 235 ~~~~~~l~~~i~~~~~~ 251 (272)
+++.+.|++|..+-.+.
T Consensus 118 ~R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAA 134 (468)
T ss_pred CccHHHHHHHHHhcccc
Confidence 99999999999976554
No 96
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.49 E-value=2.6e-13 Score=93.82 Aligned_cols=90 Identities=27% Similarity=0.635 Sum_probs=76.2
Q ss_pred chhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcC
Q 024107 151 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKAN 228 (272)
Q Consensus 151 ~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~ 228 (272)
+|.+.+. .+++++|+||++||+.|..+.+.+.+++.. .+ ++.++.+|++.+ .+ .++++.++|++++|++|+...
T Consensus 2 ~~~~~~~-~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHh-cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC--CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 4566553 348999999999999999999999999988 33 799999999987 56 488999999999999987543
Q ss_pred ceEeeCCCCHHHHHHHHH
Q 024107 229 PIKVSARSSSKNIAAFIK 246 (272)
Q Consensus 229 ~~~~~g~~~~~~l~~~i~ 246 (272)
.+.|..+.+.|..||+
T Consensus 78 --~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 78 --RVVGADPKEELEEFLE 93 (93)
T ss_pred --EEecCCCHHHHHHHhC
Confidence 7888888899998873
No 97
>PHA02278 thioredoxin-like protein
Probab=99.49 E-value=1.6e-13 Score=96.86 Aligned_cols=95 Identities=12% Similarity=0.174 Sum_probs=77.1
Q ss_pred cccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceEEEEEeC
Q 024107 21 DINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDN 98 (272)
Q Consensus 21 ~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i~~~~~~ 98 (272)
.++|.+.+.++++++|.||++| ++|+.+.|.++++++.+.+.+.|+.+|.+.++. .++++++|+|.+. ||+ ++|.+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i-PT~-i~fk~ 81 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST-PVL-IGYKD 81 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc-cEE-EEEEC
Confidence 4567777778889999999999 999999999999999876667899999996410 1479999999999 999 88887
Q ss_pred CcceeecCCCCCChHHHHHH
Q 024107 99 KAISKFLLESDLTPSNIEEF 118 (272)
Q Consensus 99 ~~~~~~~~~g~~~~~~i~~f 118 (272)
|+. ..+..|..+.+.|.++
T Consensus 82 G~~-v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQL-VKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEE-EEEEeCCCCHHHHHhh
Confidence 653 3334787888877765
No 98
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.48 E-value=4.8e-13 Score=100.41 Aligned_cols=105 Identities=8% Similarity=0.087 Sum_probs=87.2
Q ss_pred CcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeC
Q 024107 20 TDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 98 (272)
Q Consensus 20 ~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~ 98 (272)
+...++....++++++|.||++| ++|+.+.|.+.++++.+.+.+.|+.||.+.... ..++++|+|.++ ||+ .+++.
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-~~~~~~~~V~~i-Pt~-v~~~~ 85 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-LPEIDRYRVDGI-PHF-VFLDR 85 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-HHHHHHcCCCCC-CEE-EEECC
Confidence 34567777788899999999999 999999999999999998878888888775422 589999999999 999 88864
Q ss_pred CcceeecCCCCCChHHHHHHHHHHhcCcc
Q 024107 99 KAISKFLLESDLTPSNIEEFCSRLLHGTL 127 (272)
Q Consensus 99 ~~~~~~~~~g~~~~~~i~~fi~~~~~~~~ 127 (272)
++.....+.|....+.|.+++...+.+.-
T Consensus 86 ~G~~v~~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 86 EGNEEGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 43445556888999999999999987653
No 99
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.3e-13 Score=106.92 Aligned_cols=105 Identities=18% Similarity=0.381 Sum_probs=87.6
Q ss_pred eEEecc-cchhHHhhcC-CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEE
Q 024107 144 VQIVVG-KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 219 (272)
Q Consensus 144 v~~l~~-~~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~ 219 (272)
|..+++ .+|...+... .+.++|.|++.||++|+...|.+..++.+|. +..|..+|+++. .. +.++|++.||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhhchhhhcCcccCceEE
Confidence 445554 5688777433 5799999999999999999999999999997 589999999998 55 488999999999
Q ss_pred EEeCCCCcCceEeeCCCCHHHHHHHHHHHcCcCCC
Q 024107 220 FYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ 254 (272)
Q Consensus 220 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 254 (272)
+|.+|.++. .+.| .+...|.+-+.++..+..-
T Consensus 80 ff~ng~kid--~~qG-Ad~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 80 FFRNGVKID--QIQG-ADASGLEEKVAKYASTSAA 111 (288)
T ss_pred EEecCeEee--eecC-CCHHHHHHHHHHHhccCcc
Confidence 999998875 4555 4889999999998876543
No 100
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.48 E-value=2.7e-13 Score=96.12 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=79.9
Q ss_pred eCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhHHhhcCCCCCCceEEEEE
Q 024107 19 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 96 (272)
Q Consensus 19 l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~ 96 (272)
-|.++|...++++++++|+||++| ++|+.+.|.+.+++..+.+. +.|+.+|++ . .+++++|+|.++ ||+ .++
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~---~~~~~~~~v~~~-Pt~-~~~ 78 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T---IDTLKRYRGKCE-PTF-LFY 78 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C---HHHHHHcCCCcC-cEE-EEE
Confidence 467788888888999999999999 99999999999999999854 889999999 5 689999999999 999 888
Q ss_pred eCCcceeecCCCCCChHHHHHHHHH
Q 024107 97 DNKAISKFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~i~~fi~~ 121 (272)
.+++. .....| .+.+.+.+++..
T Consensus 79 ~~g~~-~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGEL-VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred ECCEE-EEEEec-CChHHHHHHHhh
Confidence 76643 233345 588888888765
No 101
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.48 E-value=2.8e-13 Score=95.64 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=82.6
Q ss_pred CcccccccccC-CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEe
Q 024107 20 TDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 97 (272)
Q Consensus 20 ~~~~f~~~~~~-~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~ 97 (272)
++++|.+.+.. +++++|+||++| ++|+.+.+.++++++.+.+.+.|+.+|++.. +.++++||+.++ |++ .++.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~-P~~-~~~~ 76 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN---PDIAAKYGIRSI-PTL-LLFK 76 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC---HHHHHHcCCCcC-CEE-EEEe
Confidence 45667775544 569999999999 9999999999999999998899999999998 899999999999 999 7776
Q ss_pred CCcceeecCCCCCChHHHHHHHHHH
Q 024107 98 NKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 98 ~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
+++ ....+.|..+.+.+.+|+.+.
T Consensus 77 ~g~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 77 NGK-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CCc-EeeeecCCCCHHHHHHHHHhh
Confidence 654 334457888999999999874
No 102
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.47 E-value=1.6e-13 Score=97.73 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=66.5
Q ss_pred cccccccc--CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeC
Q 024107 22 INSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 98 (272)
Q Consensus 22 ~~f~~~~~--~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~ 98 (272)
++|++.+. ++++++|.||++| ++|+.+.|.+.++|.++.+.+.|+.||+++. ++++++|||.+. ||+ .+|.+
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~---~~la~~~~V~~i-PTf-~~fk~ 77 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV---PDFNKMYELYDP-PTV-MFFFR 77 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC---HHHHHHcCCCCC-CEE-EEEEC
Confidence 45566554 5678999999999 9999999999999999998899999999999 999999999999 999 78877
Q ss_pred Ccc
Q 024107 99 KAI 101 (272)
Q Consensus 99 ~~~ 101 (272)
+..
T Consensus 78 G~~ 80 (114)
T cd02954 78 NKH 80 (114)
T ss_pred CEE
Confidence 653
No 103
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.47 E-value=4.4e-13 Score=94.75 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=83.4
Q ss_pred ceEeeCcccccccccCCcceEEEEEEcc---cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCce
Q 024107 15 LVTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 91 (272)
Q Consensus 15 ~v~~l~~~~f~~~~~~~~~~~v~fy~~~---~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~ 91 (272)
-+.++|..||++.+..+...+|.||++| ++|..+.|.+.++|+++.+.+.|+.+|++++ +.++.+|||.+. ||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~---~~la~~f~V~sI-PT 86 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE---QALAARFGVLRT-PA 86 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC---HHHHHHcCCCcC-CE
Confidence 3567899999999888889999999995 9999999999999999999999999999999 899999999999 99
Q ss_pred EEEEEeCCcceeecCCCCCChHHHH
Q 024107 92 VVTAFDNKAISKFLLESDLTPSNIE 116 (272)
Q Consensus 92 i~~~~~~~~~~~~~~~g~~~~~~i~ 116 (272)
+ ++|.+|+ ....+.|..+.+++.
T Consensus 87 l-i~fkdGk-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 L-LFFRDGR-YVGVLAGIRDWDEYV 109 (111)
T ss_pred E-EEEECCE-EEEEEeCccCHHHHh
Confidence 9 8888764 333446777766653
No 104
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.46 E-value=8.7e-13 Score=103.68 Aligned_cols=115 Identities=33% Similarity=0.557 Sum_probs=98.2
Q ss_pred hhHHHHHhhcCCCceEeeCcccccccccCCcc-eEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhH
Q 024107 2 DKILQFLNYNKFPLVTKLTDINSASVHSSPIK-LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPF 79 (272)
Q Consensus 2 ~~l~~fi~~~s~~~v~~l~~~~f~~~~~~~~~-~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l 79 (272)
++|.+||..++.|.|.++|++++..++..+++ ++++|+... ...+.+...++++|+.+++++.|+.+|+... +++
T Consensus 65 ~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~---~~~ 141 (184)
T PF13848_consen 65 EELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF---PRL 141 (184)
T ss_dssp HHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT---HHH
T ss_pred HHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh---HHH
Confidence 57999999999999999999999999999987 444454445 7889999999999999999999999999987 899
Q ss_pred HhhcCCC--CCCceEEEEEeCCccee-ecCCCCCChHHHHHHHHH
Q 024107 80 LTLFGLE--ESKNTVVTAFDNKAISK-FLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 80 ~~~~~i~--~~~P~i~~~~~~~~~~~-~~~~g~~~~~~i~~fi~~ 121 (272)
++.+|++ .. |++ ++++...+.. |.+.+.++.++|.+|+++
T Consensus 142 ~~~~~i~~~~~-P~~-vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 142 LKYFGIDEDDL-PAL-VIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHTTTTTSSS-SEE-EEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHcCCCCccC-CEE-EEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999999 55 999 7888555443 445888999999999975
No 105
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.46 E-value=4.4e-13 Score=101.09 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=72.7
Q ss_pred CceEeeCccccccccc--CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCCCC--
Q 024107 14 PLVTKLTDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEE-- 87 (272)
Q Consensus 14 ~~v~~l~~~~f~~~~~--~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i~~-- 87 (272)
..+.++++++|++.+. .+++++|.||++| ++|+++.|.|.++++.+.+ .+.|+.||+++. ++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~---~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF---PNVAEKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC---HHHHHHcCceecC
Confidence 4688899999999763 3468999999999 9999999999999999985 499999999999 89999999998
Q ss_pred ----CCceEEEEEeCCc
Q 024107 88 ----SKNTVVTAFDNKA 100 (272)
Q Consensus 88 ----~~P~i~~~~~~~~ 100 (272)
+ ||+ .+|.+++
T Consensus 105 ~v~~~-PT~-ilf~~Gk 119 (152)
T cd02962 105 LSKQL-PTI-ILFQGGK 119 (152)
T ss_pred CcCCC-CEE-EEEECCE
Confidence 8 999 7887664
No 106
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.46 E-value=3.7e-13 Score=95.81 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=79.7
Q ss_pred ccccccccCCcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceEEEEE
Q 024107 22 INSASVHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAF 96 (272)
Q Consensus 22 ~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i~~~~ 96 (272)
+.|.+...++++++|+||++| ++|+.+.+.+ .++++.+.+.+.++.+|++..+. ...++++++|.++ ||+ .+|
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~-Pti-~~~ 79 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP-PTY-LFY 79 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC-CEE-EEE
Confidence 456677788899999999999 9999999988 68899888779999999986210 1689999999999 999 888
Q ss_pred eC-CcceeecCCCCCChHHHHHHH
Q 024107 97 DN-KAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 97 ~~-~~~~~~~~~g~~~~~~i~~fi 119 (272)
+. ++.....+.|..+.++|.+++
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHh
Confidence 85 333456678999999998876
No 107
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.44 E-value=7.1e-13 Score=94.09 Aligned_cols=97 Identities=8% Similarity=0.018 Sum_probs=75.1
Q ss_pred Cccccccccc--CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEE
Q 024107 20 TDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 96 (272)
Q Consensus 20 ~~~~f~~~~~--~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~ 96 (272)
+.++|++.+. ++++++|.||++| ++|+.+.|.+.++++.+ +.+.|+.||+++.....+++++|+|.++ ||+ .++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~-Pt~-~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV-PHF-LFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC-CEE-EEE
Confidence 3456667664 3789999999999 99999999999999999 5599999999876211379999999999 999 788
Q ss_pred eCCcceeecCCCCCChHHHHHHHHH
Q 024107 97 DNKAISKFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~i~~fi~~ 121 (272)
.+++ ....+.| ...+.+.+-+..
T Consensus 79 ~~G~-~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 79 KDGE-KIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred eCCe-EEEEEeC-CCHHHHHHHHHh
Confidence 6654 3344466 556666665543
No 108
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.43 E-value=1.9e-12 Score=93.33 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=81.9
Q ss_pred CceEeeCc-ccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCce
Q 024107 14 PLVTKLTD-INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 91 (272)
Q Consensus 14 ~~v~~l~~-~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~ 91 (272)
..+..++. ++|.+.+.++.+++|+||++| ++|+.+.|.++++++.+.+ +.|..||++.. +.++++|+|.+. ||
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~---~~l~~~~~v~~v-Pt 78 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKA---PFLVEKLNIKVL-PT 78 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccC---HHHHHHCCCccC-CE
Confidence 34566666 788888888889999999999 9999999999999999876 89999999999 899999999999 99
Q ss_pred EEEEEeCCcce-ee----cC--CCCCChHHHHHHH
Q 024107 92 VVTAFDNKAIS-KF----LL--ESDLTPSNIEEFC 119 (272)
Q Consensus 92 i~~~~~~~~~~-~~----~~--~g~~~~~~i~~fi 119 (272)
+ ++|.+++.. ++ .+ .++.+.+++..|+
T Consensus 79 ~-l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 79 V-ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred E-EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9 788766432 21 11 1346777777765
No 109
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.42 E-value=8.5e-13 Score=93.70 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=73.3
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCccc--CCCeEEEEeC--CCCcCceEee
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVE--EYPTLLFYPA--GDKANPIKVS 233 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~--~~P~l~~~~~--~~~~~~~~~~ 233 (272)
++++++.|+++||++|..+.+.+.++|+++++ ++.|+.+|++.+ .+. .+++. ++|++++++. |.+.. ...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~--~~~ 87 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYL--MPE 87 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccC--CCc
Confidence 68999999999999999999999999999998 899999999998 554 78998 9999999988 44432 233
Q ss_pred CCCCHHHHHHHHHHH
Q 024107 234 ARSSSKNIAAFIKEQ 248 (272)
Q Consensus 234 g~~~~~~l~~~i~~~ 248 (272)
|..+.+.|.+||.+.
T Consensus 88 ~~~~~~~l~~fi~~~ 102 (103)
T cd02982 88 EELTAESLEEFVEDF 102 (103)
T ss_pred cccCHHHHHHHHHhh
Confidence 445999999999875
No 110
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.42 E-value=1.5e-12 Score=95.80 Aligned_cols=91 Identities=18% Similarity=0.307 Sum_probs=73.1
Q ss_pred hcCC-CcEEEEEECCCChhHHHhHHHHH---HHHHHhcCCCceEEEEEeCCCC--------------CC-CCCcccCCCe
Q 024107 157 LNSH-KDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASAN--------------EH-PKLQVEEYPT 217 (272)
Q Consensus 157 ~~~~-~~~lv~f~~~~C~~c~~~~~~~~---~~a~~~~~~~~v~~~~id~~~~--------------~~-~~~~v~~~P~ 217 (272)
...+ ++++|+||++||++|+.+.+.+. .+...+++ ++.+..+|.+.+ ++ ..+++.++|+
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 87 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT 87 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence 3556 89999999999999999999885 56666765 788999998764 23 3679999999
Q ss_pred EEEEeCC-CCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 218 LLFYPAG-DKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 218 l~~~~~~-~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
+++|.++ ++. ..++.|..+.+.+.++|+..+.
T Consensus 88 ~~~~~~~gg~~-~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 88 VIFLDPEGGKE-IARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EEEEcCCCCce-eEEecCCCCHHHHHHHHHHHHh
Confidence 9999875 443 3378999999999999987654
No 111
>PTZ00062 glutaredoxin; Provisional
Probab=99.41 E-value=1.7e-12 Score=102.37 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=80.1
Q ss_pred cccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeCCCCc
Q 024107 148 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKA 227 (272)
Q Consensus 148 ~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~~~ 227 (272)
+.+.+.+.+..+.+.++++|+|+||+.|+.+.+.+.++++++. ++.|+.||.+ ++|.++|++++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc------cCcccceEEEEEECCEEE
Confidence 4567788775445789999999999999999999999999996 6999999987 899999999999999988
Q ss_pred CceEeeCCCCHHHHHHHHHHHcCcCC
Q 024107 228 NPIKVSARSSSKNIAAFIKEQLKEKD 253 (272)
Q Consensus 228 ~~~~~~g~~~~~~l~~~i~~~~~~~~ 253 (272)
+ ++.|. +...|..++.++.++..
T Consensus 76 ~--r~~G~-~~~~~~~~~~~~~~~~~ 98 (204)
T PTZ00062 76 N--SLEGC-NTSTLVSFIRGWAQKGS 98 (204)
T ss_pred e--eeeCC-CHHHHHHHHHHHcCCCC
Confidence 7 77776 57888888888776543
No 112
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.41 E-value=1.6e-12 Score=93.90 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=77.5
Q ss_pred ceEeeCcccccccc-cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHhhcCCCCCC
Q 024107 15 LVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESK 89 (272)
Q Consensus 15 ~v~~l~~~~f~~~~-~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~~~~~l~~~~~i~~~~ 89 (272)
.+.++++.+|++.+ +.+++++|.||++| ++|+.+.|.|+++++.+.+ .+.|+.+||+...+ +.+|++|+|.++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~~- 79 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN-VALCRDFGVTGY- 79 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh-HHHHHhCCCCCC-
Confidence 46788999999976 44469999999999 9999999999999998863 59999999975433 689999999999
Q ss_pred ceEEEEEeCCccee---ecCCCC-CChHHHH
Q 024107 90 NTVVTAFDNKAISK---FLLESD-LTPSNIE 116 (272)
Q Consensus 90 P~i~~~~~~~~~~~---~~~~g~-~~~~~i~ 116 (272)
||+ .+|.++.... -.++|. +..+++.
T Consensus 80 Pt~-~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 80 PTL-RYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred CEE-EEECCCCccCCCCCcccCCccCHHHHH
Confidence 999 8887664221 223554 5555543
No 113
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.40 E-value=2.3e-12 Score=95.36 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=84.3
Q ss_pred Ccccccccc--cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEE
Q 024107 20 TDINSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 96 (272)
Q Consensus 20 ~~~~f~~~~--~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~ 96 (272)
+.+.|++.+ ...++++|.||++| ++|+.+.|.+.++|+++.+.+.|+.||.++. +++++.|+|.+. |+++.+|
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~---~dla~~y~I~~~-~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV---PDFNTMYELYDP-CTVMFFF 85 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC---HHHHHHcCccCC-CcEEEEE
Confidence 455677755 45678999999999 9999999999999999999899999999999 999999999977 7773488
Q ss_pred eCCcceeecCCC--------CCChHHHHHHHHHHhcCc
Q 024107 97 DNKAISKFLLES--------DLTPSNIEEFCSRLLHGT 126 (272)
Q Consensus 97 ~~~~~~~~~~~g--------~~~~~~i~~fi~~~~~~~ 126 (272)
.++........| ..+.++|.+-+..++.|-
T Consensus 86 k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 877544444456 467888888888887664
No 114
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.40 E-value=1.4e-12 Score=91.53 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=74.5
Q ss_pred cccccccccCC--cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEe
Q 024107 21 DINSASVHSSP--IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 97 (272)
Q Consensus 21 ~~~f~~~~~~~--~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~ 97 (272)
.++|++.+... ++++|.||++| ++|+++.+.|.++++++...+.|+.+|++.. ++++++|++.+. ||+ +++.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~-Pt~-~~~~ 76 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL---PEISEKFEITAV-PTF-VFFR 76 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC---HHHHHhcCCccc-cEE-EEEE
Confidence 45666766555 89999999999 9999999999999999876799999999988 899999999999 999 8887
Q ss_pred CCcceeecCCCCCChHHHHHHH
Q 024107 98 NKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 98 ~~~~~~~~~~g~~~~~~i~~fi 119 (272)
+++. ...+.| .+.+.|.+.+
T Consensus 77 ~g~~-~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 77 NGTI-VDRVSG-ADPKELAKKV 96 (97)
T ss_pred CCEE-EEEEeC-CCHHHHHHhh
Confidence 6543 222233 5666766654
No 115
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.39 E-value=3e-12 Score=91.77 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=93.5
Q ss_pred eEeeCcccccccccCCcceEEEEEEcccchHHHHHHHHHHHHH---hcCceEEEEEeCCCcccchhHHhhcCCCCCC-ce
Q 024107 16 VTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARN---FKGKIMFTAVDIADEDLAKPFLTLFGLEESK-NT 91 (272)
Q Consensus 16 v~~l~~~~f~~~~~~~~~~~v~fy~~~~~c~~~~~~~~~~a~~---~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~-P~ 91 (272)
|+++|.+++..+++++.+..++|| .......+...++++|++ +++++.|+.+|.+.+ ....+.||++.-. |.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~---~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF---RHPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh---hhHHHHcCCCHhHCCE
Confidence 578999999999999999998988 446668899999999999 999999999999998 6799999999722 99
Q ss_pred EEEEEeCCcceeec-CCCCCChHHHHHHHHHHhcCc
Q 024107 92 VVTAFDNKAISKFL-LESDLTPSNIEEFCSRLLHGT 126 (272)
Q Consensus 92 i~~~~~~~~~~~~~-~~g~~~~~~i~~fi~~~~~~~ 126 (272)
+ ++.+.+.+.+|. +.+..+.++|.+|+.+++.|+
T Consensus 77 i-~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 I-AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred E-EEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 9 888876557888 778899999999999999874
No 116
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.37 E-value=4.2e-12 Score=91.74 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=70.4
Q ss_pred CceEeeCcccccccccCC---cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 024107 14 PLVTKLTDINSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK 89 (272)
Q Consensus 14 ~~v~~l~~~~f~~~~~~~---~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~ 89 (272)
..+.++++++|.+.+... .+++|+||++| ++|+.+.|.++++|+.+.+ +.|+.||+++. .++++|+|.+.
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~i~~~- 77 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLDIKVL- 77 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcCCCcC-
Confidence 457788889998876544 79999999999 9999999999999999976 89999999875 69999999999
Q ss_pred ceEEEEEeCCc
Q 024107 90 NTVVTAFDNKA 100 (272)
Q Consensus 90 P~i~~~~~~~~ 100 (272)
||+ .+|.+|+
T Consensus 78 Pt~-~~f~~G~ 87 (113)
T cd02957 78 PTL-LVYKNGE 87 (113)
T ss_pred CEE-EEEECCE
Confidence 999 7887765
No 117
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7e-12 Score=88.57 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=68.8
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 108 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g 108 (272)
.++.++|.||++| ++|+.+.|.+.++|.+|.+ +.|..||+++. .++++.++|+.. ||+ .++.+++...- +.|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~---~~~~~~~~V~~~-PTf-~f~k~g~~~~~-~vG 92 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDEL---EEVAKEFNVKAM-PTF-VFYKGGEEVDE-VVG 92 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccC---HhHHHhcCceEe-eEE-EEEECCEEEEE-Eec
Confidence 3588899999999 9999999999999999999 99999999995 899999999999 999 78877754322 233
Q ss_pred CCChHHHHHHHHH
Q 024107 109 DLTPSNIEEFCSR 121 (272)
Q Consensus 109 ~~~~~~i~~fi~~ 121 (272)
.+.+.+.+.+..
T Consensus 93 -a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 93 -ANKAELEKKIAK 104 (106)
T ss_pred -CCHHHHHHHHHh
Confidence 344466655543
No 118
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.34 E-value=1.4e-11 Score=87.08 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=72.8
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecC-C
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-E 107 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~-~ 107 (272)
.+++++|.|+++| ++|+.+.|.+.++|+++.+.+.|+.||.++. +++++.|+|... ||+ .+|.+++.-+..+ .
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev---~dva~~y~I~am-Ptf-vffkngkh~~~d~gt 87 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV---PVYTQYFDISYI-PST-IFFFNGQHMKVDYGS 87 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc---HHHHHhcCceeC-cEE-EEEECCcEEEEecCC
Confidence 5789999999999 9999999999999999987799999999999 999999999999 999 6777766555544 2
Q ss_pred CC--------CChHHHHHHHHHHh
Q 024107 108 SD--------LTPSNIEEFCSRLL 123 (272)
Q Consensus 108 g~--------~~~~~i~~fi~~~~ 123 (272)
|+ .+.+++..-+.-+.
T Consensus 88 ~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 88 PDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHH
Confidence 22 34566666655543
No 119
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.33 E-value=7.6e-12 Score=90.16 Aligned_cols=92 Identities=16% Similarity=0.286 Sum_probs=70.7
Q ss_pred ccchhHHhhcC-CCcEEEEEEC-------CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--------CC-CCCc
Q 024107 149 GKTFDDLVLNS-HKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------EH-PKLQ 211 (272)
Q Consensus 149 ~~~~~~~v~~~-~~~~lv~f~~-------~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--------~~-~~~~ 211 (272)
.++|.+.+... +++++|.||| +||++|+.+.|.+.+++.++.+ ++.|+.||++.. ++ ..++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccC
Confidence 35677777544 5899999999 9999999999999999999986 689999999763 44 3678
Q ss_pred cc-CCCeEEEEeCCCCcCceEeeCCCCHHHHHHHH
Q 024107 212 VE-EYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 212 v~-~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
|. ++||+++|+.|+.+ .-..-.+.+.+..|+
T Consensus 87 I~~~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRL---VEDECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence 88 99999999776533 112224666666554
No 120
>PTZ00051 thioredoxin; Provisional
Probab=99.32 E-value=7.6e-12 Score=87.96 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=73.4
Q ss_pred CcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeC
Q 024107 20 TDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 98 (272)
Q Consensus 20 ~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~ 98 (272)
+.+++.++++.+++++++||++| ++|+++.+.+.++++.+.+ +.|+.+|++.+ ..++++|++.++ ||+ .++.+
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~---~~~~~~~~v~~~-Pt~-~~~~~ 80 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDEL---SEVAEKENITSM-PTF-KVFKN 80 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcch---HHHHHHCCCcee-eEE-EEEeC
Confidence 45678888888899999999999 9999999999999999876 99999999988 899999999999 999 77766
Q ss_pred CcceeecCCCCCChHHHH
Q 024107 99 KAISKFLLESDLTPSNIE 116 (272)
Q Consensus 99 ~~~~~~~~~g~~~~~~i~ 116 (272)
++. ...+.|. ..+.|.
T Consensus 81 g~~-~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 81 GSV-VDTLLGA-NDEALK 96 (98)
T ss_pred CeE-EEEEeCC-CHHHhh
Confidence 543 3333553 444443
No 121
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.32 E-value=1.2e-11 Score=89.20 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=79.9
Q ss_pred ccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCc-c
Q 024107 24 SASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA-I 101 (272)
Q Consensus 24 f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~-~ 101 (272)
|.+-+.++..++|.|+++| ++|+.+.|.+.+++..+ +.+.|..+|.+.. +.++++|||.+. ||+ .++.+++ .
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~---~~l~~~~~v~~v-Pt~-~i~~~g~~~ 88 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDED---KEKAEKYGVERV-PTT-IFLQDGGKD 88 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcC---HHHHHHcCCCcC-CEE-EEEeCCeec
Confidence 4444566778889999999 99999999999999987 5699999999988 899999999999 999 7887543 2
Q ss_pred eeecCCCCCChHHHHHHHHHHhc
Q 024107 102 SKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 102 ~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
....+.|-.+..++.+|+..+++
T Consensus 89 ~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 89 GGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ceEEEEecCchHHHHHHHHHHHh
Confidence 33356788889999999999874
No 122
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.32 E-value=1.4e-11 Score=86.39 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=76.2
Q ss_pred cccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeec
Q 024107 27 VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFL 105 (272)
Q Consensus 27 ~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~ 105 (272)
+...+++++++||++| +.|+.+.|.++++++.+.+.+.++.+|++.. ++++++++|.++ |++ .++++++ ....
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~---~~l~~~~~v~~v-Pt~-~i~~~g~-~v~~ 82 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED---QEIAEAAGIMGT-PTV-QFFKDKE-LVKE 82 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC---HHHHHHCCCeec-cEE-EEEECCe-EEEE
Confidence 3456788999999999 9999999999999999988899999999988 899999999999 999 7887653 4555
Q ss_pred CCCCCChHHHHHHH
Q 024107 106 LESDLTPSNIEEFC 119 (272)
Q Consensus 106 ~~g~~~~~~i~~fi 119 (272)
+.|..+.+++.+|+
T Consensus 83 ~~g~~~~~~~~~~l 96 (97)
T cd02949 83 ISGVKMKSEYREFI 96 (97)
T ss_pred EeCCccHHHHHHhh
Confidence 68888899988876
No 123
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.31 E-value=1.8e-11 Score=82.97 Aligned_cols=78 Identities=17% Similarity=0.378 Sum_probs=67.5
Q ss_pred EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHH
Q 024107 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKN 240 (272)
Q Consensus 163 ~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~ 240 (272)
.+..||++||++|+.+.+.+.+++..+.. .+.+..+|.+.+ +. .++++.++|++++ +|+ .++.|..+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~----~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD----VEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE----EEEecCCCHHH
Confidence 46789999999999999999999999976 699999999888 55 4899999999986 553 27889999999
Q ss_pred HHHHHHHH
Q 024107 241 IAAFIKEQ 248 (272)
Q Consensus 241 l~~~i~~~ 248 (272)
|.++|.+.
T Consensus 74 l~~~l~~~ 81 (82)
T TIGR00411 74 LVEAIKKR 81 (82)
T ss_pred HHHHHHhh
Confidence 99998864
No 124
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.28 E-value=3.3e-11 Score=93.46 Aligned_cols=103 Identities=14% Similarity=0.234 Sum_probs=83.1
Q ss_pred CCCceEeeCc-ccccccccCC---cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCC
Q 024107 12 KFPLVTKLTD-INSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE 86 (272)
Q Consensus 12 s~~~v~~l~~-~~f~~~~~~~---~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~ 86 (272)
....+.+++. ++|.+.+... .+++|+||++| ++|+.+.|.|.++|.++.. +.|+.||++.. .++.+|+|.
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~----~l~~~f~v~ 134 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT----GASDEFDTD 134 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch----hhHHhCCCC
Confidence 3567888888 9999877443 48999999999 9999999999999999975 99999999975 699999999
Q ss_pred CCCceEEEEEeCCcce-eec-----CCCCCChHHHHHHHHH
Q 024107 87 ESKNTVVTAFDNKAIS-KFL-----LESDLTPSNIEEFCSR 121 (272)
Q Consensus 87 ~~~P~i~~~~~~~~~~-~~~-----~~g~~~~~~i~~fi~~ 121 (272)
.. ||+ .+|.+++.. .+. ...+.+.+.|..|+.+
T Consensus 135 ~v-PTl-llyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 135 AL-PAL-LVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CC-CEE-EEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99 999 777766532 221 1225788888888765
No 125
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.28 E-value=1.3e-11 Score=89.38 Aligned_cols=93 Identities=14% Similarity=0.268 Sum_probs=65.9
Q ss_pred hhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--CC-CCCcccC--CCeEEEEe-CCCCcCc
Q 024107 156 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EH-PKLQVEE--YPTLLFYP-AGDKANP 229 (272)
Q Consensus 156 v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--~~-~~~~v~~--~P~l~~~~-~~~~~~~ 229 (272)
....+++++|.||++||++|+.+.+.+.+.+..... ...|..++.+.+ .. ..+++.+ +|++++|. +|+....
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchh
Confidence 345689999999999999999999999998776543 234444555444 33 4677775 99999995 6666542
Q ss_pred -eEeeCCCCHHHHHHHHHHHcC
Q 024107 230 -IKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 230 -~~~~g~~~~~~l~~~i~~~~~ 250 (272)
+...|..+...+...|....+
T Consensus 93 ~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 93 IINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred hccCCCCccccccCCCHHHHHh
Confidence 246677777777666666544
No 126
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.28 E-value=3.3e-11 Score=83.18 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=76.2
Q ss_pred cccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcc
Q 024107 23 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI 101 (272)
Q Consensus 23 ~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~ 101 (272)
+|.+.+..+++++|+||++| +.|..+.+.+.++++. .+.+.|+.+|++.. ..+++.+++.++ |++ .++..++
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~---~~~~~~~~v~~~-P~~-~~~~~g~- 74 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDEN---PELAEEYGVRSI-PTF-LFFKNGK- 74 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCC---hhHHHhcCcccc-cEE-EEEECCE-
Confidence 45666666689999999999 9999999999999999 55699999999998 799999999999 999 7777664
Q ss_pred eeecCCCCCChHHHHHHH
Q 024107 102 SKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 102 ~~~~~~g~~~~~~i~~fi 119 (272)
....+.|..+.+.|.+|+
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 344457778888888876
No 127
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.25 E-value=5.1e-10 Score=102.59 Aligned_cols=183 Identities=15% Similarity=0.185 Sum_probs=138.2
Q ss_pred cceEE-EEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEe-CCcceeecCCC
Q 024107 32 IKLQV-YVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLES 108 (272)
Q Consensus 32 ~~~~v-~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~-~~~~~~~~~~g 108 (272)
.++.+ .|..+. ..|.++...+++++ .+.++|.+...|.... .++.++|+++.. |++ .+.+ ++.....+|.|
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~---~~~~~~~~v~~~-P~~-~i~~~~~~~~~i~f~g 439 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEE---PESETLPKITKL-PTV-ALLDDDGNYTGLKFHG 439 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccc---hhhHhhcCCCcC-CEE-EEEeCCCcccceEEEe
Confidence 45544 455545 69999999999999 4556799998998887 799999999998 999 7875 43333455678
Q ss_pred CCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHhhcCCCcE-EEEEECCCChhHHHhHHHHHHHHH
Q 024107 109 DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDV-LLEVYTPWCVTCETTSKQIEKLAK 187 (272)
Q Consensus 109 ~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~~-lv~f~~~~C~~c~~~~~~~~~~a~ 187 (272)
-..-.++..|+..++.- +.+ -..++.+..+. +..-++++ +-.|.+++|++|......+.+++.
T Consensus 440 ~P~G~Ef~s~i~~i~~~-------~~~--------~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~ 503 (555)
T TIGR03143 440 VPSGHELNSFILALYNA-------AGP--------GQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIAS 503 (555)
T ss_pred cCccHhHHHHHHHHHHh-------cCC--------CCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHH
Confidence 88888999999998752 111 12344444443 44445665 556689999999999999999988
Q ss_pred HhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHH
Q 024107 188 HFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 188 ~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
... ++..-.+|...+ ++. +|+|.++|++++ +|+. .+.|..+.+.+++||
T Consensus 504 ~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~----~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 504 LNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ----VYFGKKTIEEMLELI 554 (555)
T ss_pred hCC---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE----EEeeCCCHHHHHHhh
Confidence 865 588888999999 775 999999999976 4432 478988999999886
No 128
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.24 E-value=3.3e-11 Score=97.08 Aligned_cols=90 Identities=22% Similarity=0.349 Sum_probs=72.7
Q ss_pred CCcEEEEEEC---CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeC
Q 024107 160 HKDVLLEVYT---PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA 234 (272)
Q Consensus 160 ~~~~lv~f~~---~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g 234 (272)
+...++.|++ +||++|+.+.|.+++++..+.+. .+.++.+|.+.+ ++ .+++|.++||+++|++|... ..++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~-~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~-~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKL-KLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDG-GIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCc-eEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeee-EEEEee
Confidence 3444666877 99999999999999999998532 355666666677 55 48999999999999998865 347999
Q ss_pred CCCHHHHHHHHHHHcCc
Q 024107 235 RSSSKNIAAFIKEQLKE 251 (272)
Q Consensus 235 ~~~~~~l~~~i~~~~~~ 251 (272)
..+.+.|.+||...++.
T Consensus 97 ~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRV 113 (215)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988654
No 129
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1e-11 Score=108.63 Aligned_cols=118 Identities=24% Similarity=0.426 Sum_probs=93.7
Q ss_pred cCCCCCCCCCCeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCC-ceEEEEEeCCCC---CCC
Q 024107 133 SQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN---EHP 208 (272)
Q Consensus 133 ~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~id~~~~---~~~ 208 (272)
++|.-.+...+|..++.++|+..+..+.+..+|-||++||++|+.+.|.|+++|+.+.... -+.+++|||... .++
T Consensus 30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 4444444667899999999999999888899999999999999999999999999998766 589999999776 334
Q ss_pred -CCcccCCCeEEEEeCCCCcCc--eEeeCCCCHHHHHHHHHHHcC
Q 024107 209 -KLQVEEYPTLLFYPAGDKANP--IKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 209 -~~~v~~~P~l~~~~~~~~~~~--~~~~g~~~~~~l~~~i~~~~~ 250 (272)
+++|+++|++.+|+.+....+ -.+.|.....++.+.+.+.+.
T Consensus 110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 899999999999988744321 135555556666666665554
No 130
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.22 E-value=6.5e-11 Score=86.37 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=79.5
Q ss_pred CCceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc--------cchhHHhhc
Q 024107 13 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--------LAKPFLTLF 83 (272)
Q Consensus 13 ~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~--------~~~~l~~~~ 83 (272)
+.-+..++.+++.+.+.+++..+|+|+++| ++|+.+.|.+.+++++ .++.|.+||.+... +..++.+++
T Consensus 5 i~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 5 IKGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred hccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 445667888899999999989999999999 9999999999999998 34678888887431 113666777
Q ss_pred CCC----CCCceEEEEEeCCcceeecCCC-CCChHHHHHHHH
Q 024107 84 GLE----ESKNTVVTAFDNKAISKFLLES-DLTPSNIEEFCS 120 (272)
Q Consensus 84 ~i~----~~~P~i~~~~~~~~~~~~~~~g-~~~~~~i~~fi~ 120 (272)
++. +. ||+ +++.+|+.... ..| ..+.+.|.+|+.
T Consensus 83 ~i~~~i~~~-PT~-v~~k~Gk~v~~-~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGT-PTF-VHITDGKQVSV-RCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCC-CEE-EEEeCCeEEEE-EeCCCCCHHHHHHHhh
Confidence 655 48 999 78887754333 245 567999998875
No 131
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.18 E-value=5.8e-09 Score=86.37 Aligned_cols=208 Identities=19% Similarity=0.244 Sum_probs=131.5
Q ss_pred cCCCceEeeCcccccccccCCcceEEEEEEcc-cchHH-----HHHHHHHHHHHhcC--ceEEEEEeCCCcccchhHHhh
Q 024107 11 NKFPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKS-----LLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTL 82 (272)
Q Consensus 11 ~s~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~-----~~~~~~~~a~~~~~--~i~~~~vd~~~~~~~~~l~~~ 82 (272)
-...-|+.||..||.+.+++.....|+||.+. .+-.. +...+-+||.+... .|.|+.||..+. .+++++
T Consensus 31 DGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd---~klAKK 107 (383)
T PF01216_consen 31 DGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD---AKLAKK 107 (383)
T ss_dssp SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT---HHHHHH
T ss_pred CCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH---HHHHHh
Confidence 34456899999999999988888888888888 33211 22334556665542 399999999999 899999
Q ss_pred cCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccc-hhHHhhcCCC
Q 024107 83 FGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKT-FDDLVLNSHK 161 (272)
Q Consensus 83 ~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~v~~~~~ 161 (272)
+|+... +++ .+|..+ ..+.|.|.++++.+..|+.+.+.. +|..|+.+. +..+-.-...
T Consensus 108 Lgv~E~-~Si-yVfkd~--~~IEydG~~saDtLVeFl~dl~ed-----------------PVeiIn~~~e~~~Fe~ied~ 166 (383)
T PF01216_consen 108 LGVEEE-GSI-YVFKDG--EVIEYDGERSADTLVEFLLDLLED-----------------PVEIINNKHELKAFERIEDD 166 (383)
T ss_dssp HT--ST-TEE-EEEETT--EEEEE-S--SHHHHHHHHHHHHSS-----------------SEEEE-SHHHHHHHHH--SS
T ss_pred cCcccc-CcE-EEEECC--cEEEecCccCHHHHHHHHHHhccc-----------------chhhhcChhhhhhhhhcccc
Confidence 999998 999 888876 455558999999999999999853 577787743 3333322334
Q ss_pred cEEEEEECC-CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCC-CCcccCCCeEEEEeCCCCcCceEeeCC-CCH
Q 024107 162 DVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQVEEYPTLLFYPAGDKANPIKVSAR-SSS 238 (272)
Q Consensus 162 ~~lv~f~~~-~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~-~~~v~~~P~l~~~~~~~~~~~~~~~g~-~~~ 238 (272)
..+|-|+.+ ...+ ...+..+|..|+. .+.|++.=-.. ++ ++++. .=.+-+|.+-... |+...|. .+.
T Consensus 167 ~klIGyFk~~~s~~----yk~FeeAAe~F~p--~IkFfAtfd~~--vAk~L~lK-~nev~fyepF~~~-pi~ip~~p~~e 236 (383)
T PF01216_consen 167 IKLIGYFKSEDSEH----YKEFEEAAEHFQP--YIKFFATFDKK--VAKKLGLK-LNEVDFYEPFMDE-PITIPGKPYTE 236 (383)
T ss_dssp -EEEEE-SSTTSHH----HHHHHHHHHHCTT--TSEEEEE-SHH--HHHHHT-S-TT-EEEE-TTSSS-EEEESSSS--H
T ss_pred eeEEEEeCCCCcHH----HHHHHHHHHhhcC--ceeEEEEecch--hhhhcCcc-ccceeeeccccCC-CccCCCCCCCH
Confidence 555555544 3333 4478899999998 68877653221 22 33443 4457788777655 7777775 567
Q ss_pred HHHHHHHHHHcCcC
Q 024107 239 KNIAAFIKEQLKEK 252 (272)
Q Consensus 239 ~~l~~~i~~~~~~~ 252 (272)
+.|.+||.++-.+-
T Consensus 237 ~e~~~fi~~h~rpt 250 (383)
T PF01216_consen 237 EELVEFIEEHKRPT 250 (383)
T ss_dssp HHHHHHHHHT-S-S
T ss_pred HHHHHHHHHhchhH
Confidence 99999999986543
No 132
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.18 E-value=1.5e-10 Score=85.22 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=80.1
Q ss_pred ccccccCC-cceEEEEEEcc-cchHHHHHHHH---HHHHHhcCceEEEEEeCCCcc----------cchhHHhhcCCCCC
Q 024107 24 SASVHSSP-IKLQVYVFAKA-DDLKSLLEPLE---DIARNFKGKIMFTAVDIADED----------LAKPFLTLFGLEES 88 (272)
Q Consensus 24 f~~~~~~~-~~~~v~fy~~~-~~c~~~~~~~~---~~a~~~~~~i~~~~vd~~~~~----------~~~~l~~~~~i~~~ 88 (272)
+++....+ ++++|.||++| ++|+++.+.+. ++++.+.+.+.++.+|.+... ....++++|+|.++
T Consensus 6 ~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~ 85 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT 85 (125)
T ss_pred HHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc
Confidence 34455667 89999999999 99999999885 677777767889999987531 01589999999999
Q ss_pred CceEEEEEeCC-cceeecCCCCCChHHHHHHHHHHhcC
Q 024107 89 KNTVVTAFDNK-AISKFLLESDLTPSNIEEFCSRLLHG 125 (272)
Q Consensus 89 ~P~i~~~~~~~-~~~~~~~~g~~~~~~i~~fi~~~~~~ 125 (272)
||+ .+++++ +....++.|..+.+.+.++++.++++
T Consensus 86 -Pt~-~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 86 -PTV-IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred -cEE-EEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999 788876 44555668889999999999998764
No 133
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.13 E-value=3.8e-10 Score=80.70 Aligned_cols=100 Identities=25% Similarity=0.348 Sum_probs=81.9
Q ss_pred eEeeCcccccccccCCcceEEEEEE----cc-cchHHHHHHHHHHHHHhc-CceEEEEEeCCCcccchhHHhhcCCCC--
Q 024107 16 VTKLTDINSASVHSSPIKLQVYVFA----KA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADEDLAKPFLTLFGLEE-- 87 (272)
Q Consensus 16 v~~l~~~~f~~~~~~~~~~~v~fy~----~~-~~c~~~~~~~~~~a~~~~-~~i~~~~vd~~~~~~~~~l~~~~~i~~-- 87 (272)
|.++|.+|..++..++ .++.||+ .. ...+.+...+.++|+.++ +++.|+.+|.+++ ....+.||++.
T Consensus 1 v~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~---~~~l~~fgl~~~~ 75 (111)
T cd03073 1 VGHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF---SHELEEFGLDFSG 75 (111)
T ss_pred CCeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH---HHHHHHcCCCccc
Confidence 3467888988886555 4445443 35 667889999999999999 7999999999998 67999999995
Q ss_pred --CCceEEEEEeCCcceeecCCCCC-ChHHHHHHHHHHh
Q 024107 88 --SKNTVVTAFDNKAISKFLLESDL-TPSNIEEFCSRLL 123 (272)
Q Consensus 88 --~~P~i~~~~~~~~~~~~~~~g~~-~~~~i~~fi~~~~ 123 (272)
. |++ ++.+.++ .+|.+.++. +.++|.+|+.+++
T Consensus 76 ~~~-P~~-~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 76 GEK-PVV-AIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCC-CEE-EEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 6 999 8887654 789888888 9999999999863
No 134
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.7e-10 Score=89.10 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=82.8
Q ss_pred EeeCcccccccc--cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEE
Q 024107 17 TKLTDINSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 93 (272)
Q Consensus 17 ~~l~~~~f~~~~--~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~ 93 (272)
..-++..|..-+ ...+.++|.|++.| ++|+.+.|.|..+|.+|.+ ..|..||.++. ...+..+||+.. ||+
T Consensus 5 ~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c---~~taa~~gV~am-PTF- 78 (288)
T KOG0908|consen 5 VVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDEC---RGTAATNGVNAM-PTF- 78 (288)
T ss_pred EecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHh---hchhhhcCcccC-ceE-
Confidence 333555677655 34478999999999 9999999999999999987 89999999999 899999999999 999
Q ss_pred EEEeCCcceeecCCCCCChHHHHHHHHHHhc
Q 024107 94 TAFDNKAISKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
++|.++. +...-...++..|.+.+.++..
T Consensus 79 iff~ng~--kid~~qGAd~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 79 IFFRNGV--KIDQIQGADASGLEEKVAKYAS 107 (288)
T ss_pred EEEecCe--EeeeecCCCHHHHHHHHHHHhc
Confidence 8888774 3322345788899999999865
No 135
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.10 E-value=1.2e-09 Score=73.91 Aligned_cols=79 Identities=6% Similarity=0.066 Sum_probs=68.0
Q ss_pred eEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCCh
Q 024107 34 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP 112 (272)
Q Consensus 34 ~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~ 112 (272)
.+..|+++| ++|+.+.+.+.++++.+.+.+.+..||.++. +++++++|+.+. |++ .+ + +. . .+.|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~v-Pt~-~~-~-g~-~--~~~G~~~~ 71 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN---PQKAMEYGIMAV-PAI-VI-N-GD-V--EFIGAPTK 71 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC---HHHHHHcCCccC-CEE-EE-C-CE-E--EEecCCCH
Confidence 356899999 9999999999999999988899999999988 899999999999 999 54 3 32 2 34788899
Q ss_pred HHHHHHHHHH
Q 024107 113 SNIEEFCSRL 122 (272)
Q Consensus 113 ~~i~~fi~~~ 122 (272)
+.+.+++.+.
T Consensus 72 ~~l~~~l~~~ 81 (82)
T TIGR00411 72 EELVEAIKKR 81 (82)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 136
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.09 E-value=2.2e-10 Score=76.39 Aligned_cols=73 Identities=19% Similarity=0.380 Sum_probs=58.0
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeCCCCcCceEeeCC-CCHHHHH
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSAR-SSSKNIA 242 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~~g~-~~~~~l~ 242 (272)
.|.||++||++|+.+.+.+++++.++.. .+.+..+| +..+..++++.++|++++ +|+. .+.|. .+.+.|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~----~~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL----VIMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE----EEEeccCCHHHHH
Confidence 3789999999999999999999999976 68888887 222445889999999999 5543 37775 5567777
Q ss_pred HHH
Q 024107 243 AFI 245 (272)
Q Consensus 243 ~~i 245 (272)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 776
No 137
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.09 E-value=8e-10 Score=86.91 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=80.7
Q ss_pred hcCCCceEeeCcccccccc-cCC--cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCC
Q 024107 10 YNKFPLVTKLTDINSASVH-SSP--IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGL 85 (272)
Q Consensus 10 ~~s~~~v~~l~~~~f~~~~-~~~--~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i 85 (272)
......|.+++.++|...+ ..+ .+++|+||++| ++|+.+.|.|.++|.+|.. +.|+.||++.. +..|++
T Consensus 78 ~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~------~~~~~i 150 (192)
T cd02988 78 KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC------IPNYPD 150 (192)
T ss_pred hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh------HhhCCC
Confidence 3456789999999998754 333 47999999999 9999999999999999975 99999998643 589999
Q ss_pred CCCCceEEEEEeCCcce-ee----cCCC-CCChHHHHHHHHH
Q 024107 86 EESKNTVVTAFDNKAIS-KF----LLES-DLTPSNIEEFCSR 121 (272)
Q Consensus 86 ~~~~P~i~~~~~~~~~~-~~----~~~g-~~~~~~i~~fi~~ 121 (272)
... ||+ .+|.+|... .+ .+.| ..+.+.|..++.+
T Consensus 151 ~~l-PTl-liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 151 KNL-PTI-LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCC-CEE-EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999 999 788776532 22 1223 4678888877765
No 138
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.04 E-value=1.2e-09 Score=100.01 Aligned_cols=103 Identities=24% Similarity=0.476 Sum_probs=78.9
Q ss_pred CeEEec-ccchhHHhh---cCCCcEEEEEECCCChhHHHhHHHH---HHHHHHhcCCCceEEEEEeCCCCC-----C-CC
Q 024107 143 NVQIVV-GKTFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANE-----H-PK 209 (272)
Q Consensus 143 ~v~~l~-~~~~~~~v~---~~~~~~lv~f~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~id~~~~~-----~-~~ 209 (272)
....++ .+++++.+. ..+++++|+||++||.+|+.+.+.+ .++.+.++ ++.+..+|+++++ + .+
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~ 529 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKH 529 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHH
Confidence 344553 356666653 3468999999999999999998875 56777775 5889999998752 2 37
Q ss_pred CcccCCCeEEEEe-CCCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 210 LQVEEYPTLLFYP-AGDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 210 ~~v~~~P~l~~~~-~~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
+++.++|++++|+ +|+.+...++.|..+.+.+.+++++.
T Consensus 530 ~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 530 YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 8999999999996 55553233789999999999999874
No 139
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.02 E-value=3e-09 Score=88.30 Aligned_cols=86 Identities=9% Similarity=0.195 Sum_probs=67.7
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC------------CC-CCCcccCCCeEEEEeC-CC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------EH-PKLQVEEYPTLLFYPA-GD 225 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~------------~~-~~~~v~~~P~l~~~~~-~~ 225 (272)
+++++|+||++||++|+.+.|.+..++++++ +.+..|+.+.. .+ .+++|.++|+++++.. |+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 7899999999999999999999999999985 44444444432 12 3679999999999987 55
Q ss_pred CcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 226 KANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
.+ .....|..+.+.|.+.|.....
T Consensus 242 ~v-~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QF-TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EE-EEEEeCCCCHHHHHHHHHHHhc
Confidence 44 2246688999999999987654
No 140
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.02 E-value=6.4e-09 Score=76.63 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=83.5
Q ss_pred CceEeeCcccc-cccccCCcceEEEEEEcc------cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhHHhhcCC
Q 024107 14 PLVTKLTDINS-ASVHSSPIKLQVYVFAKA------DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGL 85 (272)
Q Consensus 14 ~~v~~l~~~~f-~~~~~~~~~~~v~fy~~~------~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~~~~~~l~~~~~i 85 (272)
|-+.+|+..++ .+.=..+ .+=|..+-+. ..-+.+...+.++|++++++ +.|+.+|.+.. ..+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C~~~-~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETCEEK-QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhccCC-CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCC
Confidence 45677776655 3333333 3433333442 23467899999999999999 99999999999 789999999
Q ss_pred CC--CCceEEEEEeCCcceeec-CCCCCChHHHHHHHHHHhcCcc
Q 024107 86 EE--SKNTVVTAFDNKAISKFL-LESDLTPSNIEEFCSRLLHGTL 127 (272)
Q Consensus 86 ~~--~~P~i~~~~~~~~~~~~~-~~g~~~~~~i~~fi~~~~~~~~ 127 (272)
.+ + |++ ++++..++ +|. +.|+.+.++|.+|+.+++.|++
T Consensus 78 ~~~~~-P~v-~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 78 GGFGY-PAM-VAINFRKM-KFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CccCC-CEE-EEEecccC-ccccccCccCHHHHHHHHHHHHcCCc
Confidence 75 5 999 78887655 887 7899999999999999999986
No 141
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.02 E-value=3.5e-10 Score=81.49 Aligned_cols=84 Identities=17% Similarity=0.403 Sum_probs=59.0
Q ss_pred cCCCcEEEEEECCCChhHHHhHHHHHHH---HHHhcCCCceEEEEEeCCCCC---------------------C-CCCcc
Q 024107 158 NSHKDVLLEVYTPWCVTCETTSKQIEKL---AKHFKGLDNLVIAKIDASANE---------------------H-PKLQV 212 (272)
Q Consensus 158 ~~~~~~lv~f~~~~C~~c~~~~~~~~~~---a~~~~~~~~v~~~~id~~~~~---------------------~-~~~~v 212 (272)
..+++++++|++|||++|+.+.+.+... ...++. ++.+..+++.... + ..++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 4578999999999999999999998854 444544 5777777776531 2 25699
Q ss_pred cCCCeEEEEe-CCCCcCceEeeCCCCHHHHHHHH
Q 024107 213 EEYPTLLFYP-AGDKANPIKVSARSSSKNIAAFI 245 (272)
Q Consensus 213 ~~~P~l~~~~-~~~~~~~~~~~g~~~~~~l~~~i 245 (272)
.++|+++++. +|+.+ .++.|..+.+.|.+++
T Consensus 81 ~gtPt~~~~d~~G~~v--~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIV--YRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEE--EEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEE--EEecCCCCHHHHHhhC
Confidence 9999999996 55544 2689999999998875
No 142
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.01 E-value=1.1e-09 Score=78.96 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=69.8
Q ss_pred cccccccccC--CcceEEEEEE-------cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-----cchhHHhhcCC
Q 024107 21 DINSASVHSS--PIKLQVYVFA-------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-----LAKPFLTLFGL 85 (272)
Q Consensus 21 ~~~f~~~~~~--~~~~~v~fy~-------~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~-----~~~~l~~~~~i 85 (272)
.++|.+.+.. +++++|.||+ +| ++|+.+.|.+++++..+.+.+.|+.||.++.. + .++...++|
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~-~~~~~~~~I 87 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPN-NPFRTDPKL 87 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcc-hhhHhccCc
Confidence 3445555543 6799999999 99 99999999999999999977999999997631 1 589999999
Q ss_pred C-CCCceEEEEEeCCcceeecCCCC--CChHHHHHHH
Q 024107 86 E-ESKNTVVTAFDNKAISKFLLESD--LTPSNIEEFC 119 (272)
Q Consensus 86 ~-~~~P~i~~~~~~~~~~~~~~~g~--~~~~~i~~fi 119 (272)
. +. ||+ +++.+++ +. .|+ .+.+.+..|.
T Consensus 88 ~~~i-PT~-~~~~~~~--~l--~~~~c~~~~~~~~~~ 118 (119)
T cd02952 88 TTGV-PTL-LRWKTPQ--RL--VEDECLQADLVEMFF 118 (119)
T ss_pred ccCC-CEE-EEEcCCc--ee--cchhhcCHHHHHHhh
Confidence 8 98 999 7775442 22 222 4555555553
No 143
>PHA02125 thioredoxin-like protein
Probab=99.01 E-value=1.1e-09 Score=72.78 Aligned_cols=67 Identities=13% Similarity=0.391 Sum_probs=50.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCC-CCHHH
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR-SSSKN 240 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~-~~~~~ 240 (272)
+++||++||++|+.+.|.+..+ .+.++.+|.+.+ ++ .++++.++||++ .|+.+. ++.|. .+...
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--------~~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~--~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--------EYTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD--RFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--------hheEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE--EEeCCCCcHHH
Confidence 7899999999999999998754 256788998887 66 489999999997 454433 57775 34455
Q ss_pred HHH
Q 024107 241 IAA 243 (272)
Q Consensus 241 l~~ 243 (272)
|.+
T Consensus 69 l~~ 71 (75)
T PHA02125 69 LKE 71 (75)
T ss_pred HHH
Confidence 554
No 144
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.97 E-value=5.4e-09 Score=79.11 Aligned_cols=87 Identities=11% Similarity=0.180 Sum_probs=61.9
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC-----------CCC-C-CC---cccCCCeEEEEeC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------NEH-P-KL---QVEEYPTLLFYPA 223 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~-----------~~~-~-~~---~v~~~P~l~~~~~ 223 (272)
++..+|+||++||++|+...|.+.+++++++- .+....+|... .+. . .+ ++.++|+.+++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 55669999999999999999999999998842 34444444321 011 1 23 6788999999966
Q ss_pred CCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 224 GDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 224 ~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
.+.....++.|..+.+.|.+.|.+.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 4332122578999999998888765
No 145
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.96 E-value=5.5e-09 Score=76.13 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=63.0
Q ss_pred hhcCCCcEEEEEECCCChhHHHhHHH-H--HHHHHHhcCCCceEEEEEeCCCC-CCCC---------CcccCCCeEEEEe
Q 024107 156 VLNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN-EHPK---------LQVEEYPTLLFYP 222 (272)
Q Consensus 156 v~~~~~~~lv~f~~~~C~~c~~~~~~-~--~~~a~~~~~~~~v~~~~id~~~~-~~~~---------~~v~~~P~l~~~~ 222 (272)
....+++++|+|+++||+.|+.|... + .+++..+.. ++.++.+|.+.. ++.+ +++.++|+++++.
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~ 88 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLT 88 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 34678999999999999999999864 3 367777765 799999999876 4432 5789999999995
Q ss_pred C-CCCcCceEee-C--CCCHHHHHHHHHHH
Q 024107 223 A-GDKANPIKVS-A--RSSSKNIAAFIKEQ 248 (272)
Q Consensus 223 ~-~~~~~~~~~~-g--~~~~~~l~~~i~~~ 248 (272)
. |+.+....+. + ..+..++..++.+.
T Consensus 89 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 89 PDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 5 4433211121 1 13445666666543
No 146
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.96 E-value=7.3e-09 Score=75.54 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=85.7
Q ss_pred EecccchhHHhhcCCCcEEEEEECC--CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEE
Q 024107 146 IVVGKTFDDLVLNSHKDVLLEVYTP--WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFY 221 (272)
Q Consensus 146 ~l~~~~~~~~v~~~~~~~lv~f~~~--~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~ 221 (272)
.++..+++.++ ......+++|-.. .+..+....-++.+++++|.+. +++++.+|++.+ ++. +|+|.++||+++|
T Consensus 21 ~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 21 PVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 35667888877 4455666666543 4677788888999999999742 599999999999 775 9999999999999
Q ss_pred eCCCCcCceEeeCCCCHHHHHHHHHHHcCcCC
Q 024107 222 PAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 253 (272)
Q Consensus 222 ~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 253 (272)
++|+.+. ++.|..+.+.+.+||.+.++.+.
T Consensus 99 kdGk~v~--~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 99 TGGNYRG--VLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred ECCEEEE--EEeCcCCHHHHHHHHHHHhcCcC
Confidence 9999876 78999999999999999988653
No 147
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.93 E-value=1e-08 Score=91.66 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=68.3
Q ss_pred hcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeC----------------------------CCC-CC
Q 024107 157 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA----------------------------SAN-EH 207 (272)
Q Consensus 157 ~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~----------------------------~~~-~~ 207 (272)
++.+++++|.|||+||++|+.+.|.+.+++++++.. ++.+..|.. +.+ .+
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 356889999999999999999999999999998743 466665543 112 22
Q ss_pred -CCCcccCCCeEEEE-eCCCCcCceEeeCCCCHHHHHHHHHH
Q 024107 208 -PKLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKE 247 (272)
Q Consensus 208 -~~~~v~~~P~l~~~-~~~~~~~~~~~~g~~~~~~l~~~i~~ 247 (272)
..++|.++|+++++ ++|+.+. ++.|..+.+.|.++|+.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~--~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQR--IVKGSISEAQALALIRN 171 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEE--EEeCCCCHHHHHHHHHH
Confidence 25689999999777 4555433 78999999999999983
No 148
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.88 E-value=2.5e-08 Score=72.77 Aligned_cols=102 Identities=9% Similarity=0.075 Sum_probs=82.8
Q ss_pred eeCcccccccccCCcceEEEEEEcc---cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCceEE
Q 024107 18 KLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 93 (272)
Q Consensus 18 ~l~~~~f~~~~~~~~~~~v~fy~~~---~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~ 93 (272)
.++..+++.....+...+++|-.+. +.+..+.=++.++++.|.+ ++.|+.||++.+ +.++.+|||.+. ||+
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~---~~LA~~fgV~si-PTL- 95 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS---EAIGDRFGVFRF-PAT- 95 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC---HHHHHHcCCccC-CEE-
Confidence 3455788888877755555555555 5677788899999999984 599999999999 999999999999 999
Q ss_pred EEEeCCcceeecCCCCCChHHHHHHHHHHhcC
Q 024107 94 TAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 125 (272)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~ 125 (272)
++|.+|+.. -.+.|..+.+.+.+++.+++..
T Consensus 96 l~FkdGk~v-~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 96 LVFTGGNYR-GVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred EEEECCEEE-EEEeCcCCHHHHHHHHHHHhcC
Confidence 899887643 3347889999999999999864
No 149
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.87 E-value=4.5e-08 Score=76.06 Aligned_cols=103 Identities=16% Similarity=0.316 Sum_probs=77.4
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-----------------
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------- 205 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~----------------- 205 (272)
.+..++++.+.-.. -.+++++|+||++||+.|+...+.+.++.+++.+. ++.+..++++..
T Consensus 45 ~~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 45555665443221 24688999999999999999999999999999864 488888887532
Q ss_pred ------CC-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 206 ------EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 206 ------~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
.+ ..+++..+|+++++..++.+ .-.+.|..+.+.+.+++.+.
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i-~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKV-VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcE-EEEEeCCCCHHHHHHHHHHh
Confidence 22 25689999999999765554 22578999999999988753
No 150
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.84 E-value=4.9e-08 Score=75.96 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=64.0
Q ss_pred cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC-----------------------C-CC-CCCcc
Q 024107 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------N-EH-PKLQV 212 (272)
Q Consensus 158 ~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~-----------------------~-~~-~~~~v 212 (272)
..+++++|+||++||+.|+.+.|.+.++++. ++.+..++.+. + .+ ..+++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 3578999999999999999999999888653 35555555321 1 22 24688
Q ss_pred cCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 213 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 213 ~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
.++|+.+++..++++ ..++.|..+.+.+.++|.+.++
T Consensus 136 ~~~P~~~~id~~G~i-~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVI-LYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceE-EEEEeccCCHHHHHHHHHHHhh
Confidence 899987777544433 2367899999999999998874
No 151
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.83 E-value=4.4e-08 Score=77.05 Aligned_cols=88 Identities=17% Similarity=0.333 Sum_probs=65.8
Q ss_pred cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-C-----------------------C-CCCcc
Q 024107 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-----------------------H-PKLQV 212 (272)
Q Consensus 158 ~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~-----------------------~-~~~~v 212 (272)
..+++++|.||++||++|+...|.+.++++. ++.+..|+.+.+ + + ..+++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 3578999999999999999999999888642 466777765432 1 1 03578
Q ss_pred cCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCc
Q 024107 213 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251 (272)
Q Consensus 213 ~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 251 (272)
.++|+.+++..++++ ..++.|..+.+.+.++|...+..
T Consensus 141 ~~~P~t~vid~~G~i-~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 141 YGAPETFLIDGNGII-RYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CcCCeEEEECCCceE-EEEEecCCCHHHHHHHHHHHHHH
Confidence 899988888544444 33788999999998888877643
No 152
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.82 E-value=2.2e-08 Score=69.80 Aligned_cols=67 Identities=25% Similarity=0.518 Sum_probs=51.7
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-C-CC-------------------------CCcc
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-HP-------------------------KLQV 212 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~-~~-------------------------~~~v 212 (272)
+++++|+||++||++|+...|.+.++.+.++...++.+..|..+.. + .. .+++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999999433799999988764 1 10 1367
Q ss_pred cCCCeEEEEeCCCC
Q 024107 213 EEYPTLLFYPAGDK 226 (272)
Q Consensus 213 ~~~P~l~~~~~~~~ 226 (272)
.++|+++++..+++
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 88999999976553
No 153
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.82 E-value=3.4e-08 Score=72.22 Aligned_cols=92 Identities=21% Similarity=0.364 Sum_probs=65.0
Q ss_pred EEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeC---------------------C
Q 024107 145 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA---------------------S 203 (272)
Q Consensus 145 ~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~---------------------~ 203 (272)
..++++.+.... ..+++++|+||++||+.|+.+.+.+..+++.+. +....+|- +
T Consensus 6 ~~~~g~~~~~~~-~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 6 TTLDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred ecCCCCEeeHHH-hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 344444444433 235899999999999999999999999887742 33333322 1
Q ss_pred CC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHH
Q 024107 204 AN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA 243 (272)
Q Consensus 204 ~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~ 243 (272)
.+ .+ ..+++.++|+++++.+++ + ..++.|..+.+.|.+
T Consensus 81 ~~~~~~~~~~i~~~P~~~vid~~g-i-~~~~~g~~~~~~~~~ 120 (123)
T cd03011 81 PDGVISARWGVSVTPAIVIVDPGG-I-VFVTTGVTSEWGLRL 120 (123)
T ss_pred CCcHHHHhCCCCcccEEEEEcCCC-e-EEEEeccCCHHHHHh
Confidence 22 33 367999999999998777 4 337889899888865
No 154
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.81 E-value=1.2e-08 Score=66.15 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=47.1
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEE
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 220 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~ 220 (272)
++.|+++||++|+.+.+.+.+++.... ++.+..+|.+.+ ++ .++++.++|++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 678999999999999999999987643 699999999988 55 4889999999865
No 155
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.78 E-value=2.9e-08 Score=68.09 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=59.7
Q ss_pred CCc-EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCCC
Q 024107 160 HKD-VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARS 236 (272)
Q Consensus 160 ~~~-~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~ 236 (272)
+++ -+..|+++||++|..+.+.+.+++..+. ++.+..+|.+.. +. .+++|.++|++++ +|+. .+.|..
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~----~~~G~~ 81 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL----FGFGRM 81 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE----EEeCCC
Confidence 444 5888999999999999999999998765 699999999988 55 5999999999965 5543 456877
Q ss_pred CHHHHH
Q 024107 237 SSKNIA 242 (272)
Q Consensus 237 ~~~~l~ 242 (272)
+.+.++
T Consensus 82 ~~~e~~ 87 (89)
T cd03026 82 TLEEIL 87 (89)
T ss_pred CHHHHh
Confidence 766654
No 156
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.78 E-value=4.6e-07 Score=82.61 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=127.7
Q ss_pred cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCC
Q 024107 32 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 110 (272)
Q Consensus 32 ~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~ 110 (272)
.++-+.+|.+. +.|.++...+++++..-. +|.+...+ . . ... |++ .+..+++....+|.|-.
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~---~---~--------~~~-p~~-~~~~~~~~~~i~f~g~P 81 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDS---L---D--------VRK-PSF-SITRPGEDTGVRFAGIP 81 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEcc---C---C--------CCC-CEE-EEEcCCccceEEEEecC
Confidence 35556666667 899999999999998764 46664311 1 1 245 999 77665544556668888
Q ss_pred ChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHhhcCCCc-EEEEEECCCChhHHHhHHHHHHHHHHh
Q 024107 111 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHF 189 (272)
Q Consensus 111 ~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~-~lv~f~~~~C~~c~~~~~~~~~~a~~~ 189 (272)
.-.++..|+..+++- +.+ -..++.+..+. +..-+++ -+..|++++|++|......+..++...
T Consensus 82 ~g~Ef~s~i~~i~~~-------~~~--------~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~ 145 (517)
T PRK15317 82 MGHEFTSLVLALLQV-------GGH--------PPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN 145 (517)
T ss_pred ccHHHHHHHHHHHHh-------cCC--------CCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC
Confidence 889999999998752 111 22244333333 4333444 488999999999999999999998864
Q ss_pred cCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 190 KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 190 ~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
. ++.+-.+|...+ ++ .+|++.++|++++ ++.. .+.|..+.+.|++.+.+..+
T Consensus 146 ~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~----~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 146 P---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE----FGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred C---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE----EEecCCCHHHHHHHHhcccc
Confidence 4 689999999999 66 4999999999965 4432 58899999999999887654
No 157
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.77 E-value=3e-08 Score=73.49 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=53.9
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCC-CceEEEEEeCCCC-C------------------------C-CCCc
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-E------------------------H-PKLQ 211 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~-~~v~~~~id~~~~-~------------------------~-~~~~ 211 (272)
.+++++|+||++||+.|+...|.+.++.+++++. .++.+..++.+.. + + ..++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3679999999999999999999999999998753 2567777766543 1 1 1568
Q ss_pred ccCCCeEEEEeCCCCc
Q 024107 212 VEEYPTLLFYPAGDKA 227 (272)
Q Consensus 212 v~~~P~l~~~~~~~~~ 227 (272)
+.++|+++++..++++
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 9999999999755443
No 158
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.77 E-value=3.1e-08 Score=73.48 Aligned_cols=68 Identities=21% Similarity=0.365 Sum_probs=53.5
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCC-CceEEEEEeCCCC--------------------------CCC-CC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN--------------------------EHP-KL 210 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~-~~v~~~~id~~~~--------------------------~~~-~~ 210 (272)
.++.++|+||++||++|+...|.++++++.+++. .++.+..++.+.. .+. .+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3789999999999999999999999999998764 2467777766542 112 36
Q ss_pred cccCCCeEEEEeCCCC
Q 024107 211 QVEEYPTLLFYPAGDK 226 (272)
Q Consensus 211 ~v~~~P~l~~~~~~~~ 226 (272)
++.++|+++++..+++
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 8999999999975544
No 159
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.76 E-value=2.4e-08 Score=71.79 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=64.3
Q ss_pred cCCcceEEEEEEcc-cchHHHHHHHHH---HHHHhcCceEEEEEeCCCccc-----------------chhHHhhcCCCC
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLLEPLED---IARNFKGKIMFTAVDIADEDL-----------------AKPFLTLFGLEE 87 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~~~~~~---~a~~~~~~i~~~~vd~~~~~~-----------------~~~l~~~~~i~~ 87 (272)
.++++.+++|+++| +.|+++.+.+.+ +...+++.+.++.+++..... ..++.+.+||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 46789999999999 999999998885 555565568888888875410 136999999999
Q ss_pred CCceEEEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 88 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 88 ~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
+ ||+ .+++.++...+.+.|..+.++|.+++
T Consensus 83 t-Pt~-~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 T-PTI-VFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp S-SEE-EECTTTSCEEEEEESS--HHHHHHHH
T ss_pred c-CEE-EEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9 999 78875544455568999999988764
No 160
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.74 E-value=5.6e-08 Score=71.56 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=56.1
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC-----------------------CC-CCC-CCccc
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----------------------AN-EHP-KLQVE 213 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~-----------------------~~-~~~-~~~v~ 213 (272)
.+++++|+||++||+.|+...|.+.++++.+ ++.+..++.+ .. .+. .+++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 3789999999999999999999999998775 2556655532 22 222 57899
Q ss_pred CCCeEEEEeCCCCcCceEeeCCCCHHHH
Q 024107 214 EYPTLLFYPAGDKANPIKVSARSSSKNI 241 (272)
Q Consensus 214 ~~P~l~~~~~~~~~~~~~~~g~~~~~~l 241 (272)
++|+.+++..++.+ ..++.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v-~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGII-RYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceE-EEEEeccCChHhc
Confidence 99987777544433 2368888876644
No 161
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.74 E-value=6e-09 Score=81.70 Aligned_cols=99 Identities=19% Similarity=0.434 Sum_probs=88.0
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEE
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF 220 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~ 220 (272)
.++.++.+++..++ ...+++.|++|||+.|+...+.|...|.--.+. .+.++.+|...| -+. +|-++..|+++.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEEE
Confidence 67888999999876 568899999999999999999999998877766 699999999999 554 999999999999
Q ss_pred EeCCCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 221 YPAGDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
.++|.-. +|.|..+..+++.|+...
T Consensus 101 vkDGeFr---rysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 101 VKDGEFR---RYSGARDKNDFISFEEHR 125 (248)
T ss_pred eeccccc---cccCcccchhHHHHHHhh
Confidence 9999764 799999999999999864
No 162
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.73 E-value=1.7e-07 Score=67.68 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=70.7
Q ss_pred hcCCCcEEEEEECCCChhHHHhHHH-H--HHHHHHhcCCCceEEEEEeCCCC---CC-CCCcccCCCeEEEEeC--CCCc
Q 024107 157 LNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN---EH-PKLQVEEYPTLLFYPA--GDKA 227 (272)
Q Consensus 157 ~~~~~~~lv~f~~~~C~~c~~~~~~-~--~~~a~~~~~~~~v~~~~id~~~~---~~-~~~~v~~~P~l~~~~~--~~~~ 227 (272)
...+++++|+|+++||..|+.+... | ..+.+.++. ++.+..+|.... .+ ..+++.++|+++++.. |+.+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 4558999999999999999998764 4 466666766 688888888764 23 2679999999999965 4433
Q ss_pred CceEeeCCCCHHHHHHHHHHHcC
Q 024107 228 NPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 228 ~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
. ++.|..+.+.++..|++.+.
T Consensus 92 ~--~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 K--VWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred E--EEcCCCCHHHHHHHHHHHHh
Confidence 3 78999999999999987653
No 163
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.73 E-value=1.4e-07 Score=68.87 Aligned_cols=67 Identities=10% Similarity=0.187 Sum_probs=48.4
Q ss_pred hcCCCcEEEEEECCCChhHHHhHHHH---HHHHHHhcCCCceEEEEEeCCCCC--CCCCcccCCCeEEEEeCCCC
Q 024107 157 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANE--HPKLQVEEYPTLLFYPAGDK 226 (272)
Q Consensus 157 ~~~~~~~lv~f~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~id~~~~~--~~~~~v~~~P~l~~~~~~~~ 226 (272)
...+++++|+|++.||++|+.+...+ .++.+.++. ++....++.+..+ ... ...++|+++++..++.
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~-~g~~vPtivFld~~g~ 91 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSP-DGQYVPRIMFVDPSLT 91 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCc-cCcccCeEEEECCCCC
Confidence 45699999999999999999999875 355666654 5776677765332 222 3368999999955543
No 164
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.71 E-value=2.9e-08 Score=71.90 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=68.1
Q ss_pred ccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCC--CCceEEEEEeCC-
Q 024107 24 SASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE--SKNTVVTAFDNK- 99 (272)
Q Consensus 24 f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~--~~P~i~~~~~~~- 99 (272)
++....++++++|.||++| ++|+.+.|.+.+.+........|+.+|.+... ......|++.+ . ||+ .+++.+
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~v-Pt~-~f~~~~G 87 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYI-PRI-LFLDPSG 87 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCcc-ceE-EEECCCC
Confidence 3344567789999999999 99999999999987765444456666666542 24567899986 7 999 888743
Q ss_pred cce--eecCCCCCChHHHHHHHHHHhc
Q 024107 100 AIS--KFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 100 ~~~--~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
+.. .+...|..+.+.+..++..+++
T Consensus 88 k~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 88 DVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCchhhccCCCCccccccCCCHHHHHh
Confidence 322 2344666777777777666543
No 165
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.70 E-value=4.9e-08 Score=73.10 Aligned_cols=69 Identities=13% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCC------CceEEEEEeCCCC-C-------------------------
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL------DNLVIAKIDASAN-E------------------------- 206 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~------~~v~~~~id~~~~-~------------------------- 206 (272)
.+++++|+|||+||++|+...|.+.++.+++++. .++.+..|+.+.+ +
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999998877642 1588888887753 1
Q ss_pred C-CCCcccCCCeEEEEeCCCCc
Q 024107 207 H-PKLQVEEYPTLLFYPAGDKA 227 (272)
Q Consensus 207 ~-~~~~v~~~P~l~~~~~~~~~ 227 (272)
+ ..|++.++|+++++...+++
T Consensus 104 l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcE
Confidence 0 02367889999999765543
No 166
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.70 E-value=9.9e-08 Score=68.30 Aligned_cols=67 Identities=22% Similarity=0.481 Sum_probs=55.6
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC------------------------CC-CCCcccC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------------EH-PKLQVEE 214 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~------------------------~~-~~~~v~~ 214 (272)
+++++++||++||+.|+...+.+..+...+.+. ++.++.++.+.. .+ ..+++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 789999999999999999999999999999732 699999998872 22 3678889
Q ss_pred CCeEEEEeCCCCc
Q 024107 215 YPTLLFYPAGDKA 227 (272)
Q Consensus 215 ~P~l~~~~~~~~~ 227 (272)
+|+++++..++.+
T Consensus 98 ~P~~~l~d~~g~v 110 (116)
T cd02966 98 LPTTFLIDRDGRI 110 (116)
T ss_pred cceEEEECCCCcE
Confidence 9999999655443
No 167
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.69 E-value=2.6e-07 Score=90.33 Aligned_cols=89 Identities=21% Similarity=0.446 Sum_probs=71.1
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC---C------------------------C-CC-CC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS---A------------------------N-EH-PK 209 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~---~------------------------~-~~-~~ 209 (272)
.+++++|.|||+||++|+...|.++++.+++++. .+.+..|... . + .+ ..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4789999999999999999999999999999864 4777777421 1 1 11 25
Q ss_pred CcccCCCeEEEE-eCCCCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 210 LQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 210 ~~v~~~P~l~~~-~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
+++.++|+++++ ++|+.+. ++.|....+.|.++|.+.+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~--~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIA--QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEE--EEecccCHHHHHHHHHHHHH
Confidence 689999999999 4665443 78899899999999998765
No 168
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.68 E-value=2.8e-07 Score=82.54 Aligned_cols=105 Identities=7% Similarity=-0.008 Sum_probs=78.7
Q ss_pred CCceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEe---------------------
Q 024107 13 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVD--------------------- 69 (272)
Q Consensus 13 ~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd--------------------- 69 (272)
.|.+...+.+--...+.++++++|.||++| ++|+...|.+.++++++.. .+.|+.|.
T Consensus 38 lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~ 117 (521)
T PRK14018 38 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLD 117 (521)
T ss_pred CCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCC
Confidence 344444344333334567889999999999 9999999999999999873 36665543
Q ss_pred -------CCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 70 -------IADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 70 -------~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
++.. ..+.+.|+|.++ |++ .+++.++.....+.|..+.+.|.++++..
T Consensus 118 y~~~pV~~D~~---~~lak~fgV~gi-PTt-~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 118 YPKLPVLTDNG---GTLAQSLNISVY-PSW-AIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred Ccccceecccc---HHHHHHcCCCCc-CeE-EEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 2333 579999999999 999 67765555566668999999999999953
No 169
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.66 E-value=1.7e-06 Score=78.82 Aligned_cols=179 Identities=15% Similarity=0.150 Sum_probs=126.5
Q ss_pred cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCC
Q 024107 32 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 110 (272)
Q Consensus 32 ~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~ 110 (272)
.++-+.+|.+. +.|.++...+++++..-. +|.+...+.. .... |++ .+..++.....+|.|-.
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~-------------~~~~-p~~-~~~~~~~~~~i~f~g~P 82 (515)
T TIGR03140 19 NPVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTAD-------------TLRK-PSF-TILRDGADTGIRFAGIP 82 (515)
T ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCC-------------cCCC-CeE-EEecCCcccceEEEecC
Confidence 34555555556 899999999999988764 4766442211 1344 999 77655444455668888
Q ss_pred ChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHhhcCCCc-EEEEEECCCChhHHHhHHHHHHHHHHh
Q 024107 111 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHF 189 (272)
Q Consensus 111 ~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~-~lv~f~~~~C~~c~~~~~~~~~~a~~~ 189 (272)
.-.++..|+..++.- +.+ -..++.+..+. +..-+++ -+-.|+++.|++|......+..++...
T Consensus 83 ~g~Ef~s~i~~i~~~-------~~~--------~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~ 146 (515)
T TIGR03140 83 GGHEFTSLVLAILQV-------GGH--------GPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN 146 (515)
T ss_pred CcHHHHHHHHHHHHh-------cCC--------CCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 888999999998752 111 22344444444 3333444 588999999999999999998888886
Q ss_pred cCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCc
Q 024107 190 KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251 (272)
Q Consensus 190 ~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 251 (272)
. ++..-.+|...+ ++ .++++.++|++++ ++.. .+.|..+.+.+++.+.+..+.
T Consensus 147 p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~----~~~g~~~~~~~~~~l~~~~~~ 201 (515)
T TIGR03140 147 P---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE----FHNGRMDLAELLEKLEETAGV 201 (515)
T ss_pred C---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE----EEecCCCHHHHHHHHhhccCc
Confidence 5 688888999998 66 4999999999976 4432 588999999888888766443
No 170
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.65 E-value=1.4e-07 Score=68.76 Aligned_cols=98 Identities=7% Similarity=-0.017 Sum_probs=71.3
Q ss_pred CcccccccccCCcceEEEEEEcc-cchHHHHHH-H--HHHHHHhcCceEEEEEeCCCcccchhHHh--------hcCCCC
Q 024107 20 TDINSASVHSSPIKLQVYVFAKA-DDLKSLLEP-L--EDIARNFKGKIMFTAVDIADEDLAKPFLT--------LFGLEE 87 (272)
Q Consensus 20 ~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~-~--~~~a~~~~~~i~~~~vd~~~~~~~~~l~~--------~~~i~~ 87 (272)
+++.++...+++++++|.|+++| +.|+.+.+. | .++++.+...+.++.+|.++. +++.+ .||+.+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~---~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER---PDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC---cHHHHHHHHHHHHhcCCCC
Confidence 45556667788999999999999 999999873 3 467887776799999999887 66665 358889
Q ss_pred CCceEEEEEeCCcceeecC-----CCCCChHHHHHHHHHH
Q 024107 88 SKNTVVTAFDNKAISKFLL-----ESDLTPSNIEEFCSRL 122 (272)
Q Consensus 88 ~~P~i~~~~~~~~~~~~~~-----~g~~~~~~i~~fi~~~ 122 (272)
+ |++ .++++++...+.. ..+.+...+..+++++
T Consensus 81 ~-Pt~-vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 81 W-PLN-VFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred C-CEE-EEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 9 999 7887765444332 1124445666666654
No 171
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.64 E-value=4.1e-07 Score=70.63 Aligned_cols=91 Identities=11% Similarity=0.257 Sum_probs=74.7
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcc-------------------cchhHHhhcCCCCC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED-------------------LAKPFLTLFGLEES 88 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~~-------------------~~~~l~~~~~i~~~ 88 (272)
.+++++|.||++| +.|+...+.+.++++++.+. +.++.|+++... +...+++.||+.+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 4578999999999 99999999999999999864 888888876321 11578999999999
Q ss_pred CceEEEEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 89 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 89 ~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
|++ .+++.++.....+.|..+.+++.+++.+.
T Consensus 140 -P~~-~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 -PTT-FLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred -CeE-EEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999 77776655555668899999999998875
No 172
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.63 E-value=4.8e-07 Score=69.89 Aligned_cols=84 Identities=10% Similarity=0.146 Sum_probs=63.1
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC---C-----------C-CCCcc--cCCCeEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---E-----------H-PKLQV--EEYPTLLFYPAGDK 226 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~---~-----------~-~~~~v--~~~P~l~~~~~~~~ 226 (272)
+|.||++||++|+...|.+++++++++ +.+..|+.+.. . + ..|++ .++|+.+++..+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999984 45555554432 1 1 13453 58999999966655
Q ss_pred cCceEeeCCCCHHHHHHHHHHHcCc
Q 024107 227 ANPIKVSARSSSKNIAAFIKEQLKE 251 (272)
Q Consensus 227 ~~~~~~~g~~~~~~l~~~i~~~~~~ 251 (272)
+....+.|..+.+.|.+.|.+.+..
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 4112589999999999999988765
No 173
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.61 E-value=3.9e-07 Score=75.72 Aligned_cols=89 Identities=8% Similarity=-0.021 Sum_probs=68.5
Q ss_pred CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc---------cchhHHhhcCCCCCCceEEEEEeCCc
Q 024107 31 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED---------LAKPFLTLFGLEESKNTVVTAFDNKA 100 (272)
Q Consensus 31 ~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~---------~~~~l~~~~~i~~~~P~i~~~~~~~~ 100 (272)
+++.+|.||++| ++|+...|.+.++++++. +.+..|+.+... + ..+++++||.+. |++ .+++.++
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d-~~la~~~gV~~v-Ptl-~Lv~~~~ 240 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPD-AGQAQQLKIRTV-PAV-FLADPDP 240 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCC-HHHHHHcCCCcC-CeE-EEEECCC
Confidence 568999999999 999999999999999986 445444444310 1 468999999999 999 7887633
Q ss_pred ce-eecCCCCCChHHHHHHHHHHhc
Q 024107 101 IS-KFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 101 ~~-~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
+. .....|..+.+.|.+.+.....
T Consensus 241 ~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 241 NQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 33 3333588999999999988754
No 174
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.61 E-value=1.3e-07 Score=84.17 Aligned_cols=100 Identities=22% Similarity=0.435 Sum_probs=76.7
Q ss_pred EEeccc-chhHHhhcC-CCcEEEEEECCCChhHHHhHHHHH---HHHHHhcCCCceEEEEEeCCCCC--C----CCCccc
Q 024107 145 QIVVGK-TFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASANE--H----PKLQVE 213 (272)
Q Consensus 145 ~~l~~~-~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~---~~a~~~~~~~~v~~~~id~~~~~--~----~~~~v~ 213 (272)
..++.. ..++.+.+. +++++++|||+||-.|+.+.+..- .+..+++ ++.....|...++ + +++++-
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~---~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ---DVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC---CeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 556665 666665333 359999999999999999998865 3333333 6999999999983 2 378999
Q ss_pred CCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 214 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 214 ~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
+.|++++|+.+++... ...|.++.+.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e~~-~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEPE-ILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcCc-CCcceecHHHHHHHHHHh
Confidence 9999999985554423 489999999999999875
No 175
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.60 E-value=3.2e-07 Score=61.06 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=55.9
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCC-CCh
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTP 112 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~-~~~ 112 (272)
.|.||++| ++|+.+.|.++++++++...+.|..+| . .+.+.++|+.+. |++ .+ + +. .. +.|. .+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~---~~~a~~~~v~~v-Pti-~i-~-G~-~~--~~G~~~~~ 68 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---D---MNEILEAGVTAT-PGV-AV-D-GE-LV--IMGKIPSK 68 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---C---HHHHHHcCCCcC-CEE-EE-C-CE-EE--EEeccCCH
Confidence 37899999 999999999999999998878888887 2 356788999999 999 56 3 32 22 3564 455
Q ss_pred HHHHHHH
Q 024107 113 SNIEEFC 119 (272)
Q Consensus 113 ~~i~~fi 119 (272)
+.+.+++
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 6777665
No 176
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.60 E-value=3e-07 Score=84.36 Aligned_cols=90 Identities=9% Similarity=0.126 Sum_probs=72.9
Q ss_pred CCcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceEEEEEeCCcce--
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNKAIS-- 102 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i~~~~~~~~~~-- 102 (272)
++++++|.||++| .+|+.+.+.. .++.+.+++ +.+..+|.++++. ..+++++|++.+. ||+ .+++.++..
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~-Pt~-~~~~~~G~~i~ 549 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL-PTI-LFFDAQGQEIP 549 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC-CEE-EEECCCCCCcc
Confidence 4689999999999 9999998875 678888875 8899999985421 1589999999999 999 888744322
Q ss_pred eecCCCCCChHHHHHHHHHH
Q 024107 103 KFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 103 ~~~~~g~~~~~~i~~fi~~~ 122 (272)
..++.|..+.+++.+++++.
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccccCCCCHHHHHHHHHHh
Confidence 35668999999999999875
No 177
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.57 E-value=5.5e-08 Score=65.81 Aligned_cols=65 Identities=22% Similarity=0.583 Sum_probs=50.6
Q ss_pred hcCCCcEEEEEECCCChhHHHhHHHH---HHHHHHhcCCCceEEEEEeCCCCCC-CCCcccCCCeEEEEeC
Q 024107 157 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPA 223 (272)
Q Consensus 157 ~~~~~~~lv~f~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~id~~~~~~-~~~~v~~~P~l~~~~~ 223 (272)
...+++++|+|+++||+.|+.+...+ ..+...+.. ++....+|.+..+- ..+...++|+++++.+
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLDP 82 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEET
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeCC
Confidence 45699999999999999999999887 455564655 79999999977632 2333367999999863
No 178
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.56 E-value=3.5e-07 Score=59.20 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=49.5
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA 95 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~ 95 (272)
++.|+++| ++|+.+.+.+.+++.... .+.|..+|.++. +++.+++|+.+. |++ .+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~---~~l~~~~~i~~v-Pti-~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEF---PDLADEYGVMSV-PAI-VI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccC---HhHHHHcCCccc-CEE-EE
Confidence 57899999 999999999999988754 599999999988 899999999999 999 44
No 179
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.56 E-value=1.9e-07 Score=67.24 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=33.9
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEE
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 200 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~i 200 (272)
.+++++|+||++||++|+...|.++++++.+.+ ++.+..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 368999999999999999999999999888865 5655555
No 180
>PHA02125 thioredoxin-like protein
Probab=98.54 E-value=6.7e-07 Score=59.34 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=43.1
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
+++||++| ++|+.+.|.+.+++ +.++.||++.. .+++++|+|.++ ||+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~---~~l~~~~~v~~~-PT~ 50 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEG---VELTAKHHIRSL-PTL 50 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCC---HHHHHHcCCcee-CeE
Confidence 68999999 99999999998763 45788998888 899999999999 999
No 181
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.54 E-value=1.4e-06 Score=62.90 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=75.9
Q ss_pred ccCCcceEEEEEEcc-cchHHHHH-HH--HHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeC-Ccce
Q 024107 28 HSSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN-KAIS 102 (272)
Q Consensus 28 ~~~~~~~~v~fy~~~-~~c~~~~~-~~--~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~-~~~~ 102 (272)
..++++++|+|+++| ..|+.+.. +| .++.+.++....+..+|.+..+. .+++..|++.++ |++ .++++ .+..
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~-~~~~~~~~~~~~-P~~-~~i~~~~g~~ 90 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEG-QRFLQSYKVDKY-PHI-AIIDPRTGEV 90 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccH-HHHHHHhCccCC-CeE-EEEeCccCcE
Confidence 356789999999999 99999876 44 66777777778888888875433 799999999999 999 78877 4445
Q ss_pred eecCCCCCChHHHHHHHHHHhc
Q 024107 103 KFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 103 ~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
.+.+.|..+++.+.+-+.+...
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHHh
Confidence 6677999999999998888653
No 182
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.51 E-value=4.1e-07 Score=61.75 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=77.5
Q ss_pred CcccccccccCCcceEEEEEEcccchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCC----CCCceEEEE
Q 024107 20 TDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE----ESKNTVVTA 95 (272)
Q Consensus 20 ~~~~f~~~~~~~~~~~v~fy~~~~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~----~~~P~i~~~ 95 (272)
+...|.+++.....++|+|......-......++++|+..+|.-+++.|||.+.+. +.||+++.+. .- |..+..
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~-kKLCKKlKv~~~~kp~-~~~LkH 85 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSES-RKLCKKLKVDPSSKPK-PVELKH 85 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHH-HHHHHHHccCCCCCCC-cchhhc
Confidence 34568888888878888888777666777789999999999999999999997433 8999999999 54 766455
Q ss_pred EeCCcceeecCCCCCChHHHHHHHHH
Q 024107 96 FDNKAISKFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 96 ~~~~~~~~~~~~g~~~~~~i~~fi~~ 121 (272)
|..|.- .-.|+-..+..++..|+++
T Consensus 86 YKdG~f-HkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDGDF-HTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCc-cccccchhhHHHHHHHhhC
Confidence 554432 2335777899999999986
No 183
>smart00594 UAS UAS domain.
Probab=98.50 E-value=1.4e-06 Score=63.70 Aligned_cols=87 Identities=10% Similarity=0.197 Sum_probs=65.6
Q ss_pred hcCCCcEEEEEECCCChhHHHhHHHH---HHHHHHhcCCCceEEEEEeCCCCC---C-CCCcccCCCeEEEEeCCC--Cc
Q 024107 157 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANE---H-PKLQVEEYPTLLFYPAGD--KA 227 (272)
Q Consensus 157 ~~~~~~~lv~f~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~id~~~~~---~-~~~~v~~~P~l~~~~~~~--~~ 227 (272)
...+|.++|+|+++||..|..+...+ .++...++. ++.+..+|....+ + ..+++.++|++.++.... ..
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 45578999999999999999988654 456666665 6888888887663 3 277999999999995443 11
Q ss_pred C--ceEeeCCCCHHHHHHHH
Q 024107 228 N--PIKVSARSSSKNIAAFI 245 (272)
Q Consensus 228 ~--~~~~~g~~~~~~l~~~i 245 (272)
. .-+..|..+.+.|+.++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 0 11578999999998876
No 184
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.49 E-value=2.6e-06 Score=64.55 Aligned_cols=89 Identities=9% Similarity=0.139 Sum_probs=63.7
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc---------chhHH-hhc---CCCCCCceEEEE
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL---------AKPFL-TLF---GLEESKNTVVTA 95 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~---------~~~l~-~~~---~i~~~~P~i~~~ 95 (272)
.+...+|.||++| ++|++..|.+.++++++. +.+..|+.+.... ..... ..+ ++.+. ||. .+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i-PTt-~L 124 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT-PAT-FL 124 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC-CeE-EE
Confidence 3456699999999 999999999999999985 4454445443200 02233 345 78888 999 88
Q ss_pred EeCCcce-eecCCCCCChHHHHHHHHHH
Q 024107 96 FDNKAIS-KFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 96 ~~~~~~~-~~~~~g~~~~~~i~~fi~~~ 122 (272)
++.+++. .....|..+.+.+.+.+.+.
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 8876554 33457899999988887765
No 185
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.7e-07 Score=69.19 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=106.3
Q ss_pred cccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeec
Q 024107 27 VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFL 105 (272)
Q Consensus 27 ~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~ 105 (272)
+..+.+..+++|++.| ..|+++..++..+|+.+ .++.|+.++.+.. ++++..+.+... |++ .++..+.....
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~---~eis~~~~v~~v-p~~-~~~~~~~~v~~- 85 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEF---PEISNLIAVEAV-PYF-VFFFLGEKVDR- 85 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhh---hHHHHHHHHhcC-cee-eeeecchhhhh-
Confidence 3347778899999999 99999999999999999 5599999999999 899999999999 999 55544432211
Q ss_pred CCCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEeccc---chhHHhhc--CCCcEEEEE----ECCCChhHH
Q 024107 106 LESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGK---TFDDLVLN--SHKDVLLEV----YTPWCVTCE 176 (272)
Q Consensus 106 ~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~~~v~~--~~~~~lv~f----~~~~C~~c~ 176 (272)
..|....... .-+........ ...+......+++...+ ..++.+.. ..++++++. -.|.|+..+
T Consensus 86 l~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~ 158 (227)
T KOG0911|consen 86 LSGADPPFLV-SKVEKLAESGS------ASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSR 158 (227)
T ss_pred hhccCcHHHH-HHHHHhhhhcc------cccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccH
Confidence 1332222221 11111111110 00000011111111100 12333322 234444433 247899988
Q ss_pred HhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----CC-cccCCCeEEEEeCCC
Q 024107 177 TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGD 225 (272)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~----~~-~v~~~P~l~~~~~~~ 225 (272)
++..+++.. ++.+...|+..+ ++. .| ++.++|.+ |-+|.
T Consensus 159 ~~v~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQl--yI~GE 203 (227)
T KOG0911|consen 159 QLVGILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQL--YVKGE 203 (227)
T ss_pred HHHHHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccce--eECCE
Confidence 887777665 788999999988 552 33 67777877 44553
No 186
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.46 E-value=1.2e-06 Score=72.20 Aligned_cols=105 Identities=24% Similarity=0.336 Sum_probs=76.1
Q ss_pred CCCeEEecc-cchhHHhhcC--CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCCCCcccCCC
Q 024107 141 NANVQIVVG-KTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYP 216 (272)
Q Consensus 141 ~~~v~~l~~-~~~~~~v~~~--~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~~~~v~~~P 216 (272)
.+.+..++. +.|.+.+... ...|+|+||.+.+..|..+...|..+|.+|. .++|.+|..+.. -+..|....+|
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~~~~~f~~~~LP 200 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCPASENFPDKNLP 200 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCCTTTTS-TTC-S
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccCcccCCcccCCC
Confidence 456888865 7788877443 3478999999999999999999999999998 599999998776 44689999999
Q ss_pred eEEEEeCCCCcCceEeeC-------CCCHHHHHHHHHHHcC
Q 024107 217 TLLFYPAGDKANPIKVSA-------RSSSKNIAAFIKEQLK 250 (272)
Q Consensus 217 ~l~~~~~~~~~~~~~~~g-------~~~~~~l~~~i~~~~~ 250 (272)
+|++|++|..+. .+.| ..+..+|-.||.++--
T Consensus 201 tllvYk~G~l~~--~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 201 TLLVYKNGDLIG--NFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp EEEEEETTEEEE--EECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred EEEEEECCEEEE--eEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 999999997654 2322 3567888888887633
No 187
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.44 E-value=1.6e-06 Score=60.24 Aligned_cols=67 Identities=18% Similarity=0.358 Sum_probs=52.5
Q ss_pred CcceEEEEEEcc-cchHHHHHHHHHHHHHhc--CceEEEEEeCCCccc----------------------chhHHhhcCC
Q 024107 31 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADEDL----------------------AKPFLTLFGL 85 (272)
Q Consensus 31 ~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~--~~i~~~~vd~~~~~~----------------------~~~l~~~~~i 85 (272)
+++++|+|+++| ++|+...|.+.++.++++ +.+.|+.|.++.... ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 478999999999 999999999999999999 669999998875422 3457788888
Q ss_pred CCCCceEEEEEeCC
Q 024107 86 EESKNTVVTAFDNK 99 (272)
Q Consensus 86 ~~~~P~i~~~~~~~ 99 (272)
.+. |++ .+.+.+
T Consensus 81 ~~i-P~~-~lld~~ 92 (95)
T PF13905_consen 81 NGI-PTL-VLLDPD 92 (95)
T ss_dssp TSS-SEE-EEEETT
T ss_pred CcC-CEE-EEECCC
Confidence 888 888 666644
No 188
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.44 E-value=1.4e-06 Score=64.00 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=60.7
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeC-----------------------CCcccchhHHhhcCC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI-----------------------ADEDLAKPFLTLFGL 85 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~-----------------------~~~~~~~~l~~~~~i 85 (272)
++++++|+||++| ++|....|.+.++++.+. +.|+.|+. +.. ..+++.||+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPD---GRVGIDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc---chHHHhcCC
Confidence 4678999999999 999999999999998873 55655553 333 578889999
Q ss_pred CCCCceEEEEEeCCcceeecCCCCCChHHH
Q 024107 86 EESKNTVVTAFDNKAISKFLLESDLTPSNI 115 (272)
Q Consensus 86 ~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i 115 (272)
.+. |+. .+++.++...+.+.|..+.+.|
T Consensus 99 ~~~-P~~-~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 99 YGV-PET-FLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCC-CeE-EEECCCceEEEEEeccCChHhc
Confidence 999 987 6776555556666787776644
No 189
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.41 E-value=1.7e-06 Score=63.22 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=64.4
Q ss_pred cccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeC---------------------CCcccchhHH
Q 024107 23 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI---------------------ADEDLAKPFL 80 (272)
Q Consensus 23 ~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~---------------------~~~~~~~~l~ 80 (272)
.+......+++++|.||++| ++|....|.+.++++.+. +..+.+|- +.. ..++
T Consensus 12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~ 86 (123)
T cd03011 12 QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPD---GVIS 86 (123)
T ss_pred EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCC---cHHH
Confidence 34333345578999999999 999999999999998843 22222221 222 4799
Q ss_pred hhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHH
Q 024107 81 TLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEE 117 (272)
Q Consensus 81 ~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~ 117 (272)
+.|+|.+. |++ .+++.++ ..+.+.|..+.+.|.+
T Consensus 87 ~~~~i~~~-P~~-~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 87 ARWGVSVT-PAI-VIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred HhCCCCcc-cEE-EEEcCCC-eEEEEeccCCHHHHHh
Confidence 99999999 999 8888776 7777788888887754
No 190
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.1e-07 Score=71.29 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=65.0
Q ss_pred ceEeeC-cccccccc--cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCCCCC-
Q 024107 15 LVTKLT-DINSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEES- 88 (272)
Q Consensus 15 ~v~~l~-~~~f~~~~--~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i~~~- 88 (272)
.+.-++ ...+++.+ ++...|+|.||+.| +.|....|.+.+++.+|.. .+.||+||.... ++...+|+|+..
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf---pd~a~kfris~s~ 201 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF---PDVAAKFRISLSP 201 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC---cChHHheeeccCc
Confidence 345553 33344444 44478899999999 9999999999999999995 499999999999 899999999821
Q ss_pred ---C-ceEEEEEeCCc
Q 024107 89 ---K-NTVVTAFDNKA 100 (272)
Q Consensus 89 ---~-P~i~~~~~~~~ 100 (272)
+ ||+ .+|..|+
T Consensus 202 ~srQLPT~-ilFq~gk 216 (265)
T KOG0914|consen 202 GSRQLPTY-ILFQKGK 216 (265)
T ss_pred ccccCCeE-EEEccch
Confidence 2 999 7776654
No 191
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.39 E-value=2.6e-06 Score=66.25 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=67.8
Q ss_pred cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCc--------------------ccchhHHhhcCCCC
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------DLAKPFLTLFGLEE 87 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~--------------------~~~~~l~~~~~i~~ 87 (272)
..+++++|.||++| ++|++..|.+.+++++ .+.+..|+.++. +....+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 35789999999999 9999999999998764 255555553211 00135677889888
Q ss_pred CCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHh
Q 024107 88 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 123 (272)
Q Consensus 88 ~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 123 (272)
. |+. .+++.++...+.+.|..+.+.+.+++..++
T Consensus 138 ~-P~~-~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 138 A-PET-FLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred C-CeE-EEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 8 987 677655556777789999999999999876
No 192
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.7e-07 Score=70.32 Aligned_cols=88 Identities=17% Similarity=0.327 Sum_probs=71.8
Q ss_pred CCCCeEEe-cccchhHHhh-cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCccc--
Q 024107 140 TNANVQIV-VGKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVE-- 213 (272)
Q Consensus 140 ~~~~v~~l-~~~~~~~~v~-~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~-- 213 (272)
.+..++.. +.+.+++.+. +....++|-|++.|.+.|..+.|.+.+++.+|... .++||++|+... +. .+|+|+
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccC
Confidence 34467777 5566666553 33568899999999999999999999999999875 799999999998 55 477654
Q ss_pred ----CCCeEEEEeCCCCcC
Q 024107 214 ----EYPTLLFYPAGDKAN 228 (272)
Q Consensus 214 ----~~P~l~~~~~~~~~~ 228 (272)
..||+++|..|+++.
T Consensus 201 ~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred cccccCCeEEEEccchhhh
Confidence 689999999998874
No 193
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.37 E-value=3.4e-06 Score=61.96 Aligned_cols=68 Identities=21% Similarity=0.380 Sum_probs=51.9
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC-----C--C---------C-------------CC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----N--E---------H-------------PK 209 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~-----~--~---------~-------------~~ 209 (272)
.+++++|+||+.||+.|....|.+.++.++++.. ++.+..|+... . . + ..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 4689999999999999999999999999999864 58888776521 0 0 0 02
Q ss_pred CcccCCCeEEEEeCCCCc
Q 024107 210 LQVEEYPTLLFYPAGDKA 227 (272)
Q Consensus 210 ~~v~~~P~l~~~~~~~~~ 227 (272)
+++.++|+.+++..++++
T Consensus 101 ~~v~~~P~~~vid~~G~v 118 (126)
T cd03012 101 YGNQYWPALYLIDPTGNV 118 (126)
T ss_pred hCCCcCCeEEEECCCCcE
Confidence 467789999999654443
No 194
>smart00594 UAS UAS domain.
Probab=98.37 E-value=5.2e-06 Score=60.63 Aligned_cols=88 Identities=15% Similarity=0.252 Sum_probs=69.5
Q ss_pred cCCcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcc---
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI--- 101 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~--- 101 (272)
..+|.++|+|+++| ..|+.+.... .++.+.++..+.+..+|....+. .+++..|++.++ |++ ++++..++
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~~~~~-P~~-~~l~~~~g~~~ 101 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYKLDSF-PYV-AIVDPRTGQRV 101 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcCcCCC-CEE-EEEecCCCcee
Confidence 56689999999999 9999977643 56667777678888888886654 799999999999 999 77765542
Q ss_pred --eeecCCCCCChHHHHHHH
Q 024107 102 --SKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 102 --~~~~~~g~~~~~~i~~fi 119 (272)
....+.|..+++.+.+++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 133458999999998875
No 195
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.36 E-value=4.5e-06 Score=65.63 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=69.7
Q ss_pred cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc--------------------chhHHhhcCCCC
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--------------------AKPFLTLFGLEE 87 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~--------------------~~~l~~~~~i~~ 87 (272)
.++++++|.||++| ++|++..|.+.+++++ + +.+..|+.++... ...+...||+.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 35788999999999 9999999999998763 3 6677776543200 023556789999
Q ss_pred CCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhc
Q 024107 88 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 88 ~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
. |+. .+++.++...+.+.|..+.+.+.+.+...+.
T Consensus 143 ~-P~t-~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 143 A-PET-FLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred C-CeE-EEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9 988 6777665567777899999999999998875
No 196
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.35 E-value=3.7e-06 Score=59.95 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=60.8
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhc-CceEEEEEeCCCc--------------------ccchhHHhhcCCCC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE--------------------DLAKPFLTLFGLEE 87 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~-~~i~~~~vd~~~~--------------------~~~~~l~~~~~i~~ 87 (272)
.++++++.||++| ++|+...+.+.++.+++. ..+.++.|+++.. +....+++.||+.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 3678999999999 999999999999999996 3599999999862 00147899999999
Q ss_pred CCceEEEEEeCCcceeecCC
Q 024107 88 SKNTVVTAFDNKAISKFLLE 107 (272)
Q Consensus 88 ~~P~i~~~~~~~~~~~~~~~ 107 (272)
. |++ .+++.++...+.+.
T Consensus 98 ~-P~~-~l~d~~g~v~~~~~ 115 (116)
T cd02966 98 L-PTT-FLIDRDGRIRARHV 115 (116)
T ss_pred c-ceE-EEECCCCcEEEEec
Confidence 9 999 78876654455444
No 197
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.33 E-value=1.9e-07 Score=73.43 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=89.1
Q ss_pred CCCceEeeCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCCCCCC
Q 024107 12 KFPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESK 89 (272)
Q Consensus 12 s~~~v~~l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i~~~~ 89 (272)
+.+.+..++.+|+..+++.. |++.|+++| +.|+...++|...|.--.+ .+.++.||...+ +.|.-+|-+...
T Consensus 22 r~s~~~~~~eenw~~~l~ge--wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n---pgLsGRF~vtaL- 95 (248)
T KOG0913|consen 22 RSSKLTRIDEENWKELLTGE--WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN---PGLSGRFLVTAL- 95 (248)
T ss_pred ccceeEEecccchhhhhchH--HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec---cccceeeEEEec-
Confidence 34578899999998887665 999999999 9999999999999988776 389999999999 899999999999
Q ss_pred ceEEEEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 90 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 90 P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
||| .....+.-++| .|.++.++++.|+...
T Consensus 96 ptI-YHvkDGeFrry--sgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 96 PTI-YHVKDGEFRRY--SGARDKNDFISFEEHR 125 (248)
T ss_pred ceE-EEeeccccccc--cCcccchhHHHHHHhh
Confidence 999 66666655666 8999999999999885
No 198
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.29 E-value=8.8e-06 Score=65.99 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC-------C--CC-----CC----C------cc--
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH-----PK----L------QV-- 212 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~-------~--~~-----~~----~------~v-- 212 (272)
.+++++|.||++||+.|....|.+.++.+++++. .+.+..|+++. . ++ .+ | +.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 3689999999999999999999999999999875 48888888631 0 00 01 1 11
Q ss_pred ----------------------cCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 213 ----------------------EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 213 ----------------------~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
...|+.+++..++++ ..+|.|..+.+.|...|++.+.
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV-v~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV-VERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE-EEEECCCCCHHHHHHHHHHHhc
Confidence 124788888555544 3378999999999999988764
No 199
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.27 E-value=7.3e-06 Score=64.65 Aligned_cols=84 Identities=15% Similarity=0.279 Sum_probs=56.0
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEe-------------CC--C---C-CC-CCCcccCCCeE
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID-------------AS--A---N-EH-PKLQVEEYPTL 218 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id-------------~~--~---~-~~-~~~~v~~~P~l 218 (272)
.+++++|+||++||+.|+...|.+.++.+.... ++.++..+ .+ . . ++ ..|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 468899999999999999999999998876532 44444311 00 0 1 12 25688899999
Q ss_pred EEEeCCCCcCceEeeCC-CCHHHHHHHHHH
Q 024107 219 LFYPAGDKANPIKVSAR-SSSKNIAAFIKE 247 (272)
Q Consensus 219 ~~~~~~~~~~~~~~~g~-~~~~~l~~~i~~ 247 (272)
+++..++.+ ++.|. .+.+.+.+.++.
T Consensus 151 ~lID~~G~I---~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGKI---RAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEECCCCeE---EEccCCCCHHHHHHHHHH
Confidence 888655533 45564 344666666654
No 200
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.26 E-value=2.2e-06 Score=71.42 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCeEEecccchhHHhhcCCCcEEEEEECCCChhHH-----HhHH-HHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCccc
Q 024107 142 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCE-----TTSK-QIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVE 213 (272)
Q Consensus 142 ~~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~-----~~~~-~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~ 213 (272)
..+..|+.+||++.+ .....++|+||.|--..-. ++.. .++-+|+.+.. ..+.||.||..++ .++ ++++.
T Consensus 34 DRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~-~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 34 DRVIDLNEKNFKRAL-KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED-KGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp --CEEE-TTTHHHHH-HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG-CTEEEEEEETTTTHHHHHHHT--
T ss_pred cceEEcchhHHHHHH-HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc-cCcceEEeccHHHHHHHHhcCcc
Confidence 368899999999976 5567778888887532211 1223 33444444543 3799999999999 665 88999
Q ss_pred CCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCcCC
Q 024107 214 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 253 (272)
Q Consensus 214 ~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 253 (272)
..+++++|++|+.+ .|.|.++++.|++||.+.+..+.
T Consensus 112 E~~SiyVfkd~~~I---EydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 112 EEGSIYVFKDGEVI---EYDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp STTEEEEEETTEEE---EE-S--SHHHHHHHHHHHHSSSE
T ss_pred ccCcEEEEECCcEE---EecCccCHHHHHHHHHHhcccch
Confidence 99999999999855 79999999999999999998654
No 201
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.25 E-value=8.8e-06 Score=55.77 Aligned_cols=71 Identities=11% Similarity=-0.061 Sum_probs=57.0
Q ss_pred eEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCCh
Q 024107 34 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP 112 (272)
Q Consensus 34 ~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~ 112 (272)
.+..|+++| +.|....+.+.+++..+. ++.+..+|.++. ++++++|||.+. |++ .+ + ++ ..+ .|..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~---~e~a~~~~V~~v-Pt~-vi-d-G~-~~~--~G~~~~ 83 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALF---QDEVEERGIMSV-PAI-FL-N-GE-LFG--FGRMTL 83 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhC---HHHHHHcCCccC-CEE-EE-C-CE-EEE--eCCCCH
Confidence 466788899 999999999999998876 499999999998 899999999999 999 54 3 22 233 465555
Q ss_pred HHH
Q 024107 113 SNI 115 (272)
Q Consensus 113 ~~i 115 (272)
+.+
T Consensus 84 ~e~ 86 (89)
T cd03026 84 EEI 86 (89)
T ss_pred HHH
Confidence 544
No 202
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.24 E-value=1.6e-05 Score=61.66 Aligned_cols=92 Identities=12% Similarity=0.242 Sum_probs=68.8
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC---------CC----------------------
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---------EH---------------------- 207 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~---------~~---------------------- 207 (272)
.+++++++||++||+.|....+.+.++..++++. ++.+..|..+.. .+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 5688999999999999999999999999999753 688888877541 00
Q ss_pred CCCcccCCCeEEEEeCCCCcCceEeeC-----------CCCHHHHHHHHHHHcCcCCC
Q 024107 208 PKLQVEEYPTLLFYPAGDKANPIKVSA-----------RSSSKNIAAFIKEQLKEKDQ 254 (272)
Q Consensus 208 ~~~~v~~~P~l~~~~~~~~~~~~~~~g-----------~~~~~~l~~~i~~~~~~~~~ 254 (272)
..+++...|+++++..++++ .|.+ ..+...+.+-|+..+.....
T Consensus 103 ~~~~v~~~P~~~lid~~G~v---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKL---VYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HHcCCCcCCcEEEECCCCeE---EEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 02367789999999655544 3332 24568899999888765543
No 203
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.22 E-value=1.6e-05 Score=63.80 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC---------C-CC-CCCcccCCCeEEEEeCCCCcC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA---------N-EH-PKLQVEEYPTLLFYPAGDKAN 228 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~---------~-~~-~~~~v~~~P~l~~~~~~~~~~ 228 (272)
++.-|++||.+.|+.|..+.|.+..++++++= .+..+.+|... + .. .+++|..+|++++...+...-
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 66779999999999999999999999999953 34444444321 1 12 256999999999997665332
Q ss_pred ceEeeCCCCHHHHHHHH
Q 024107 229 PIKVSARSSSKNIAAFI 245 (272)
Q Consensus 229 ~~~~~g~~~~~~l~~~i 245 (272)
...-.|..+.+.|.+-|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 22467889999887644
No 204
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.22 E-value=1e-05 Score=59.97 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=53.0
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcc----------------------cchhHHhhc
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADED----------------------LAKPFLTLF 83 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~----------------------~~~~l~~~~ 83 (272)
+++.++|.|+++| ++|+...|.+.++++.+.+ .+.+..|+.+... ....+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4578999999999 9999999999999998875 3667777665431 002456779
Q ss_pred CCCCCCceEEEEEeCC
Q 024107 84 GLEESKNTVVTAFDNK 99 (272)
Q Consensus 84 ~i~~~~P~i~~~~~~~ 99 (272)
|+.++ |++ .+++.+
T Consensus 96 ~v~~i-Pt~-~lid~~ 109 (132)
T cd02964 96 KVEGI-PTL-VVLKPD 109 (132)
T ss_pred CCCCC-CEE-EEECCC
Confidence 99999 999 777654
No 205
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.22 E-value=6.7e-06 Score=61.95 Aligned_cols=77 Identities=16% Similarity=0.368 Sum_probs=56.9
Q ss_pred CCCcEEEEEECC-CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-C---------------------C-CCCccc-
Q 024107 159 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E---------------------H-PKLQVE- 213 (272)
Q Consensus 159 ~~~~~lv~f~~~-~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~---------------------~-~~~~v~- 213 (272)
.+++++|.||++ ||++|+...|.+.++.+.++.. .+.+..+..+.+ . + ..+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 478899999999 9999999999999999998764 477766665543 1 1 124666
Q ss_pred --------CCCeEEEEeCCCCcCceEeeCCCC
Q 024107 214 --------EYPTLLFYPAGDKANPIKVSARSS 237 (272)
Q Consensus 214 --------~~P~l~~~~~~~~~~~~~~~g~~~ 237 (272)
.+|+++++..++.+ ..+..|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V-~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKV-VYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBE-EEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEE-EEEEeCCCC
Confidence 89999999777765 224455444
No 206
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.22 E-value=5.9e-06 Score=58.98 Aligned_cols=82 Identities=22% Similarity=0.596 Sum_probs=63.2
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC-CC-CC-CCCc--ccCCCeEEEEeCCCCcCceEeeC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQ--VEEYPTLLFYPAGDKANPIKVSA 234 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~-~~-~~-~~~~--v~~~P~l~~~~~~~~~~~~~~~g 234 (272)
++++++.||++||++|+.+.|.+..++..+.. .+.+..+|.. .. +. ..++ +..+|+++++.++.... .+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVD--RLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhh--hhhh
Confidence 67889998999999999999999999999987 6899999996 44 44 3667 89999999888887643 3444
Q ss_pred --CCCHHHHHHHH
Q 024107 235 --RSSSKNIAAFI 245 (272)
Q Consensus 235 --~~~~~~l~~~i 245 (272)
......++.-.
T Consensus 108 ~~~~~~~~~~~~~ 120 (127)
T COG0526 108 GKVLPKEALIDAL 120 (127)
T ss_pred cccCCHHHHHHHh
Confidence 34444444433
No 207
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.20 E-value=6e-06 Score=65.62 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=39.0
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~ 203 (272)
.+++++|.||++||+.|+...|.+.++.+++++. .+.+..|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence 3689999999999999999999999999999864 4888888763
No 208
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.19 E-value=1.1e-05 Score=59.51 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=53.2
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcc---------------------cchhHHhhcC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADED---------------------LAKPFLTLFG 84 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~~~---------------------~~~~l~~~~~ 84 (272)
++++++|.||++| ++|+...|.+.++++++.+ .+.++.|+.+... ....+++.||
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4578999999999 9999999999999998864 3566666655321 0136788999
Q ss_pred CCCCCceEEEEEeCCc
Q 024107 85 LEESKNTVVTAFDNKA 100 (272)
Q Consensus 85 i~~~~P~i~~~~~~~~ 100 (272)
+.++ |++ .+++.++
T Consensus 97 v~~~-P~~-~lid~~G 110 (131)
T cd03009 97 IEGI-PTL-IILDADG 110 (131)
T ss_pred CCCC-CEE-EEECCCC
Confidence 9999 999 7887553
No 209
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.17 E-value=1.1e-05 Score=53.63 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=53.1
Q ss_pred EEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCCCCcccCCCeEEEEeCCCCcCceEeeC-CCCHHHHHH
Q 024107 166 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIAA 243 (272)
Q Consensus 166 ~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~~~~v~~~P~l~~~~~~~~~~~~~~~g-~~~~~~l~~ 243 (272)
.+++++|+.|..+...+++++..+. +.+-.+|.... ++.++++.++|++++ +|+ +++.| ..+.+.|.+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~----~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK----VVFVGRVPSKEELKE 73 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE----EEEESS--HHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE----EEEEecCCCHHHHHH
Confidence 3478889999999999999999984 45555566444 557899999999954 553 47999 788899999
Q ss_pred HHH
Q 024107 244 FIK 246 (272)
Q Consensus 244 ~i~ 246 (272)
||+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 210
>PLN02412 probable glutathione peroxidase
Probab=98.16 E-value=1e-05 Score=62.43 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC-------C--CC-----CC----Cc---------
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH-----PK----LQ--------- 211 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~-------~--~~-----~~----~~--------- 211 (272)
.+++++|.||++||+.|+...+.+.++.+++++. ++.+..|+++. . ++ .+ |.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 3689999999999999999999999999999875 48888887631 0 10 11 10
Q ss_pred ---------------------ccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCc
Q 024107 212 ---------------------VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 251 (272)
Q Consensus 212 ---------------------v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 251 (272)
+...|+.+++..++++ .-++.|..+.+.|...|.+.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~v-v~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKV-VQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcE-EEEECCCCCHHHHHHHHHHHHhh
Confidence 2224787888555444 23688999999999999887653
No 211
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.15 E-value=1.5e-05 Score=78.28 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=73.4
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCC---Cc---------------------ccchhHHhhc
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA---DE---------------------DLAKPFLTLF 83 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~---~~---------------------~~~~~l~~~~ 83 (272)
++++++|.||+.| ++|+...|.+.+++++|+++ +.|+.|.+. .. +....+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4689999999999 99999999999999999875 777766431 10 0014678899
Q ss_pred CCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhc
Q 024107 84 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 84 ~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
++.+. |++ .+++.++.....+.|....+.+.+++...+.
T Consensus 499 ~V~~i-Pt~-ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSW-PTF-AVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCcc-ceE-EEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999 999 8887555455567888899999999998754
No 212
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.14 E-value=6.4e-05 Score=53.47 Aligned_cols=105 Identities=18% Similarity=0.358 Sum_probs=74.2
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHH-HHhcCCCceEEEEEeCCCC-C-----C-CCCcc--
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASAN-E-----H-PKLQV-- 212 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a-~~~~~~~~v~~~~id~~~~-~-----~-~~~~v-- 212 (272)
....|..-+|++.+ ...+.++|-|=.. .+--.-+..+..+| ......+++-++.+-+..+ + + .+|++
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 35678889999988 5568999999432 23345567888999 4454444899999988765 2 3 26666
Q ss_pred cCCCeEEEEeCCCCcCceEe--eCCCCHHHHHHHHHHHcCc
Q 024107 213 EEYPTLLFYPAGDKANPIKV--SARSSSKNIAAFIKEQLKE 251 (272)
Q Consensus 213 ~~~P~l~~~~~~~~~~~~~~--~g~~~~~~l~~~i~~~~~~ 251 (272)
..+|.+++|..+. ..+++| .|..+.++|..|++++.+.
T Consensus 82 e~fPv~~LF~~~~-~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 82 EDFPVIYLFVGDK-EEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp CC-SEEEEEESST-TSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred ccCCEEEEecCCC-CCCccCCccCCccHHHHHHHHHhCCCe
Confidence 5789999999444 458999 8899999999999998664
No 213
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.13 E-value=5.3e-06 Score=59.62 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=47.9
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
.+++++|.||++| ++|++..|.+.++++.+.+.+.+..+..+..+...++++++++..+ |++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~-p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAF-PYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCC-cEE
Confidence 4679999999999 9999999999999999876666655522211112578899999888 877
No 214
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.13 E-value=1.3e-05 Score=60.04 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=52.8
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC--------ceEEEEEeCCCccc----------------------chh
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--------KIMFTAVDIADEDL----------------------AKP 78 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~--------~i~~~~vd~~~~~~----------------------~~~ 78 (272)
++++++|+|+++| ++|++..|.+.++++++.+ .+.++.|+.+.... ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4679999999999 9999999999998887653 37888887664311 125
Q ss_pred HHhhcCCCCCCceEEEEEeCC
Q 024107 79 FLTLFGLEESKNTVVTAFDNK 99 (272)
Q Consensus 79 l~~~~~i~~~~P~i~~~~~~~ 99 (272)
+...||+.+. |+. .+++.+
T Consensus 104 l~~~y~v~~i-Pt~-vlId~~ 122 (146)
T cd03008 104 LEAQFSVEEL-PTV-VVLKPD 122 (146)
T ss_pred HHHHcCCCCC-CEE-EEECCC
Confidence 7778888888 999 777755
No 215
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.12 E-value=9.7e-05 Score=52.55 Aligned_cols=103 Identities=12% Similarity=0.149 Sum_probs=72.3
Q ss_pred eEeeCcccccccccCCcceEEEEEEcccchHHHHHHHHHHH-HHhc--CceEEEEEeCCCc---ccchhHHhhcCCC--C
Q 024107 16 VTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIA-RNFK--GKIMFTAVDIADE---DLAKPFLTLFGLE--E 87 (272)
Q Consensus 16 v~~l~~~~f~~~~~~~~~~~v~fy~~~~~c~~~~~~~~~~a-~~~~--~~i~~~~vd~~~~---~~~~~l~~~~~i~--~ 87 (272)
...|++-+|++++.+.+.++|.|=... +.-.-+..|.++| +... +.+.++.|-..++ +| .+|.++|||+ .
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ay-PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N-~~Laery~i~ke~ 83 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAY-PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKEN-MELAERYKIDKED 83 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS---CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CC-HHHHHHTT-SCCC
T ss_pred eeeccceehhheeccCceEEEEEeccC-CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhH-HHHHHHhCCCccc
Confidence 457899999999999999999986655 2223345677777 3332 4588888877533 33 7999999997 4
Q ss_pred CCceEEEEEeCCcceee--cCCCCCChHHHHHHHHHH
Q 024107 88 SKNTVVTAFDNKAISKF--LLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 88 ~~P~i~~~~~~~~~~~~--~~~g~~~~~~i~~fi~~~ 122 (272)
+ |.+ .+|.++..... +..|+.+.++|..|+.+.
T Consensus 84 f-Pv~-~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 84 F-PVI-YLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp --SEE-EEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred C-CEE-EEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 6 999 78876554444 449999999999999985
No 216
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.10 E-value=4.4e-05 Score=62.50 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC----------CCCcccCCCeEEEEeCCCCcC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------PKLQVEEYPTLLFYPAGDKAN 228 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~----------~~~~v~~~P~l~~~~~~~~~~ 228 (272)
++.-+++||.+.|++|..+.|.++.++++++= .+..+.+|.... .+ .+++++.+|++++...+...-
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 55779999999999999999999999999964 344444444422 21 145799999999996664331
Q ss_pred ceEeeCCCCHHHHHHHHHHHcC
Q 024107 229 PIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 229 ~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
...-.|..+.+.|.+-|...+.
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 2246788999999988877654
No 217
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.09 E-value=9.9e-06 Score=53.73 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=46.2
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-C-----CcccCCCeEEEEeCCCCcCceEeeCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K-----LQVEEYPTLLFYPAGDKANPIKVSARS 236 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~-----~~v~~~P~l~~~~~~~~~~~~~~~g~~ 236 (272)
++.|+++||++|+.+++.+.++ .+.+-.+|++.+ ... . +++.++|++ ++.+|... ...
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l------~~~ 66 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL------TNP 66 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe------cCC
Confidence 5789999999999999888665 345556777766 332 2 377899997 56666422 245
Q ss_pred CHHHHHHHHH
Q 024107 237 SSKNIAAFIK 246 (272)
Q Consensus 237 ~~~~l~~~i~ 246 (272)
+..++.+.+.
T Consensus 67 ~~~~~~~~l~ 76 (77)
T TIGR02200 67 SAAQVKAKLQ 76 (77)
T ss_pred CHHHHHHHhh
Confidence 5566665553
No 218
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.09 E-value=2.3e-05 Score=60.05 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=84.9
Q ss_pred HHHHhhcCCCceEee-CcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhh
Q 024107 5 LQFLNYNKFPLVTKL-TDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL 82 (272)
Q Consensus 5 ~~fi~~~s~~~v~~l-~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~ 82 (272)
.+|++.. -.-+.++ ++..|-+...++..++++||-+. ..|+-+...+..+|+.+-+ ..|..||+... |=|+.+
T Consensus 58 ~~~~~~G-hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~---PFlv~k 132 (211)
T KOG1672|consen 58 KEWLSKG-HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKA---PFLVTK 132 (211)
T ss_pred HHHHHcC-CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccC---ceeeee
Confidence 4566543 3344555 47778888888889999999999 9999999999999999998 89999999999 889999
Q ss_pred cCCCCCCceEEEEEeCCcceeec--C--CC---CCChHHHHHHHHH
Q 024107 83 FGLEESKNTVVTAFDNKAISKFL--L--ES---DLTPSNIEEFCSR 121 (272)
Q Consensus 83 ~~i~~~~P~i~~~~~~~~~~~~~--~--~g---~~~~~~i~~fi~~ 121 (272)
++|.-. |++ ++|.++...-|. | -| +.+.+.+..=+.+
T Consensus 133 L~IkVL-P~v-~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 133 LNIKVL-PTV-ALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred eeeeEe-eeE-EEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence 999999 999 777766543332 1 11 3556666555544
No 219
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.06 E-value=1.1e-05 Score=52.76 Aligned_cols=67 Identities=13% Similarity=0.364 Sum_probs=49.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-----CCCcccCCCeEEEEeCCCCcCceEeeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-----PKLQVEEYPTLLFYPAGDKANPIKVSARSS 237 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-----~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~ 237 (272)
+.+|+++||++|+.+.+.+.+. ++.+..+|++.+ .. ..+++.++|++++. |+ ...| .+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~-----~~~g-~~ 65 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK-----IIVG-FD 65 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE-----EEee-CC
Confidence 5789999999999998877652 578888898876 22 23688999999874 32 2555 47
Q ss_pred HHHHHHHHH
Q 024107 238 SKNIAAFIK 246 (272)
Q Consensus 238 ~~~l~~~i~ 246 (272)
.+.|.++|+
T Consensus 66 ~~~i~~~i~ 74 (74)
T TIGR02196 66 PEKLDQLLE 74 (74)
T ss_pred HHHHHHHhC
Confidence 788888774
No 220
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.05 E-value=2e-05 Score=49.51 Aligned_cols=58 Identities=22% Similarity=0.555 Sum_probs=47.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----CCcccCCCeEEEEeCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KLQVEEYPTLLFYPAG 224 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~----~~~v~~~P~l~~~~~~ 224 (272)
++.|++.||+.|..+.+.+.++ ..... ++.+..++++.. ... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 33333 799999999888 332 5688899999999887
No 221
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.04 E-value=3e-05 Score=58.98 Aligned_cols=87 Identities=9% Similarity=0.082 Sum_probs=61.5
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC--------C-CC----CC-Cc--------------
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--------N-EH----PK-LQ-------------- 211 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~--------~-~~----~~-~~-------------- 211 (272)
+++++|.||++||++|....|.+.++.++++.. .+.+..|++.. . .+ .+ ++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 678999999999999999999999999999865 58888887511 0 00 00 10
Q ss_pred ------------ccCCCe----EEEEeCCCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 212 ------------VEEYPT----LLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 212 ------------v~~~P~----l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
....|+ .+++..++.+ ..++.|..+.+.|...|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v-~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQV-VKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcE-EEEECCCCCHHHHHHHHHHh
Confidence 113675 6666444444 33788888888888887754
No 222
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.03 E-value=3.9e-05 Score=63.36 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=72.7
Q ss_pred CCCceEeeCc-ccccccccC---CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCC
Q 024107 12 KFPLVTKLTD-INSASVHSS---PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE 86 (272)
Q Consensus 12 s~~~v~~l~~-~~f~~~~~~---~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~ 86 (272)
....|.+++. +.|.+.+.. ...++|+||.+. +.|..+...|..||.+|.. +.|..|..... + ++.+|.+.
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~---~-~~~~f~~~ 197 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC---P-ASENFPDK 197 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC---C-TTTTS-TT
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc---C-cccCCccc
Confidence 3557788854 677776643 346799999999 9999999999999999997 99999999887 4 88999999
Q ss_pred CCCceEEEEEeCCcce-ee-c---C-CCCCChHHHHHHHHHH
Q 024107 87 ESKNTVVTAFDNKAIS-KF-L---L-ESDLTPSNIEEFCSRL 122 (272)
Q Consensus 87 ~~~P~i~~~~~~~~~~-~~-~---~-~g~~~~~~i~~fi~~~ 122 (272)
.. ||| .+|.+|... .+ . . ..+.+...|..|+.++
T Consensus 198 ~L-Ptl-lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 198 NL-PTL-LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp C--SEE-EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CC-CEE-EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99 999 777776532 22 1 1 2357888999999884
No 223
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.02 E-value=7.3e-05 Score=60.85 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=67.2
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC----------CCCcccCCCeEEEEeCCCCcC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------PKLQVEEYPTLLFYPAGDKAN 228 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~----------~~~~v~~~P~l~~~~~~~~~~ 228 (272)
++.-|++||.+.|++|..+.|.++.++++++- .+..+.+|.... .+ .++++..+|++++...+...-
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 55779999999999999999999999999965 455555555333 22 146889999999996664331
Q ss_pred ceEeeCCCCHHHHHHHHHHHcC
Q 024107 229 PIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 229 ~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
...-.|..+.+.|.+-|...+.
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 2246788999999988876644
No 224
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.01 E-value=8.1e-05 Score=57.64 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=65.1
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc----------cchhHHhhcCC--CCCCceEEEEEeCCcc
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED----------LAKPFLTLFGL--EESKNTVVTAFDNKAI 101 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~----------~~~~l~~~~~i--~~~~P~i~~~~~~~~~ 101 (272)
+|.||++| ++|++..|.+.++++++. +.+..|+.+... ....+...||+ .++ |+. .+++.++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i-Ptt-fLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT-PTT-FLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC-CeE-EEEeCCCc
Confidence 78899999 999999999999999985 555555554221 11346678895 588 999 78876654
Q ss_pred eee-cCCCCCChHHHHHHHHHHhc
Q 024107 102 SKF-LLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 102 ~~~-~~~g~~~~~~i~~fi~~~~~ 124 (272)
..+ .+.|..+.+.+.+-+...++
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHh
Confidence 433 46899999999998888765
No 225
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.01 E-value=5.6e-05 Score=55.45 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=55.5
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc------cc------------------chhHHhhc
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE------DL------------------AKPFLTLF 83 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~------~~------------------~~~l~~~~ 83 (272)
++++++|.||+.| ++|.+..|.+.++++++.+ .+.++.|+.... +. ...+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 4578999999999 9999999999999999985 377777765210 00 13466677
Q ss_pred CCCCCCceEEEEEeCCcceeecCCC
Q 024107 84 GLEESKNTVVTAFDNKAISKFLLES 108 (272)
Q Consensus 84 ~i~~~~P~i~~~~~~~~~~~~~~~g 108 (272)
++.+. |+. .+++.++...+.+.|
T Consensus 102 ~v~~~-P~~-~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYW-PAL-YLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcC-CeE-EEECCCCcEEEEEec
Confidence 88887 888 677655444554433
No 226
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.98 E-value=0.00013 Score=57.14 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=35.0
Q ss_pred CCcE-EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeC
Q 024107 160 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 202 (272)
Q Consensus 160 ~~~~-lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~ 202 (272)
++++ ++.+|++||++|+...|.+.++.+++++. .+.+..|++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~ 82 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPC 82 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEec
Confidence 5554 55669999999999999999999999864 488888875
No 227
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00013 Score=53.93 Aligned_cols=87 Identities=21% Similarity=0.330 Sum_probs=64.9
Q ss_pred hcCCCcEEEEEECCCChhHHHhHHHHH---HHHHHhcCCCceEEEEEeCCCC-C----------------C-CCCcccCC
Q 024107 157 LNSHKDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASAN-E----------------H-PKLQVEEY 215 (272)
Q Consensus 157 ~~~~~~~lv~f~~~~C~~c~~~~~~~~---~~a~~~~~~~~v~~~~id~~~~-~----------------~-~~~~v~~~ 215 (272)
...++..+++|.++.|.+|..+...+. .+-+.+.+ ++.+++++++.. . + ..++++++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 345788999999999999999997763 45555676 789999888653 1 2 14589999
Q ss_pred CeEEEEeCCCCcCceEeeCCCCHHHHHHHHH
Q 024107 216 PTLLFYPAGDKANPIKVSARSSSKNIAAFIK 246 (272)
Q Consensus 216 P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~ 246 (272)
|++++|+..++. -....|.+..+.++.-++
T Consensus 117 PtfvFfdk~Gk~-Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 117 PTFVFFDKTGKT-ILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ceEEEEcCCCCE-EEecCCCCCHHHHHHHHH
Confidence 999999665443 225678888888776655
No 228
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=9.1e-05 Score=61.02 Aligned_cols=114 Identities=13% Similarity=0.290 Sum_probs=85.9
Q ss_pred CCCeEEecccchhHHhhcCCC--cEEEEEECC----CChhHHHhHHHHHHHHHHhcCCC------ceEEEEEeCCCC-CC
Q 024107 141 NANVQIVVGKTFDDLVLNSHK--DVLLEVYTP----WCVTCETTSKQIEKLAKHFKGLD------NLVIAKIDASAN-EH 207 (272)
Q Consensus 141 ~~~v~~l~~~~~~~~v~~~~~--~~lv~f~~~----~C~~c~~~~~~~~~~a~~~~~~~------~v~~~~id~~~~-~~ 207 (272)
+..|..++++.|..++....+ .++|+|.|. .|.-|......+..+|..+.... ++-|+.||.++. +.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 446889999999999976655 357788763 69999999999999999874322 688999999988 44
Q ss_pred -CCCcccCCCeEEEEeCCCC--cCceEeeC---CCCHHHHHHHHHHHcCcCCC
Q 024107 208 -PKLQVEEYPTLLFYPAGDK--ANPIKVSA---RSSSKNIAAFIKEQLKEKDQ 254 (272)
Q Consensus 208 -~~~~v~~~P~l~~~~~~~~--~~~~~~~g---~~~~~~l~~~i~~~~~~~~~ 254 (272)
..++++.+|++++|++... .++..+.+ +..++.+.+|+++......+
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 5889999999999944322 22222222 24489999999998766543
No 229
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.86 E-value=0.00018 Score=57.15 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=65.4
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCC--------cccchhHHhhcCCCCCCceE-------
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIAD--------EDLAKPFLTLFGLEESKNTV------- 92 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~--------~~~~~~l~~~~~i~~~~P~i------- 92 (272)
++++++|.|+++| +.|.+..|.+.++++++.++ +.|+.|+|+. .+...++++++|+. + |.+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-f-pvl~d~~v~g 115 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-Y-NFFEPIEVNG 115 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-c-eeeeeeeccC
Confidence 4678999999999 99999999999999999864 8899998742 11125677777752 2 322
Q ss_pred --------------------------------EEEEeCCcceeecCCCCCChHHHHHHHHHHhc
Q 024107 93 --------------------------------VTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 93 --------------------------------~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
..+++.++.....+.|..+.+.+.+.+...++
T Consensus 116 ~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 116 ENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 02444443344445677777888888887765
No 230
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.85 E-value=0.00022 Score=57.95 Aligned_cols=93 Identities=18% Similarity=0.075 Sum_probs=66.1
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCc--------ccchhHH-hhcCCC------------
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE--------DLAKPFL-TLFGLE------------ 86 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~--------~~~~~l~-~~~~i~------------ 86 (272)
.+++++|.||++| +.|....|.+.++++++.++ +.++.|+|+.. ....+++ +++|+.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 4578999999999 99999999999999999864 88888887421 0112333 344432
Q ss_pred ----------------------CCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhc
Q 024107 87 ----------------------ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 87 ----------------------~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
.. |+. .+++.++...+.+.|..+.+.+.+.|.+.++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~-Ptt-fLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWN-FEK-FLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccC-ceE-EEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 12 555 5566555556666788888888888888764
No 231
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.85 E-value=0.00032 Score=54.33 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=73.0
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc-----cc---------------------chhHHh
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE-----DL---------------------AKPFLT 81 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~-----~~---------------------~~~l~~ 81 (272)
.+++++++||++| +.|....+.+.++++++.+ .+.|+.|..+.. +. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 5678999999999 9999999999999999984 588888877541 00 235678
Q ss_pred hcCCCCCCceEEEEEeCCcceeecC---------CCCCChHHHHHHHHHHhcCc
Q 024107 82 LFGLEESKNTVVTAFDNKAISKFLL---------ESDLTPSNIEEFCSRLLHGT 126 (272)
Q Consensus 82 ~~~i~~~~P~i~~~~~~~~~~~~~~---------~g~~~~~~i~~fi~~~~~~~ 126 (272)
.||+... |++ .+++.++...|.. .+..+...+.+-|...+.|.
T Consensus 104 ~~~v~~~-P~~-~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 104 AYGAACT-PDF-FLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HcCCCcC-CcE-EEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 8999988 999 8887665444432 12356788999999998875
No 232
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.85 E-value=8.7e-05 Score=50.37 Aligned_cols=75 Identities=20% Similarity=0.329 Sum_probs=55.8
Q ss_pred EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-----CCC---CCcccCCCeEEEEeCCCCcCceEeeC
Q 024107 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----EHP---KLQVEEYPTLLFYPAGDKANPIKVSA 234 (272)
Q Consensus 163 ~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-----~~~---~~~v~~~P~l~~~~~~~~~~~~~~~g 234 (272)
-+++|+.+||+.|..+...+.+++.++. ++.+..+|++.+ ++. ..++.++|+++ .+|+.+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i------g 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI------G 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE------c
Confidence 4788999999999999999999987764 577888888764 222 22457899984 466432 2
Q ss_pred CCCHHHHHHHHHHHcC
Q 024107 235 RSSSKNIAAFIKEQLK 250 (272)
Q Consensus 235 ~~~~~~l~~~i~~~~~ 250 (272)
..++|.++++++++
T Consensus 71 --g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 --GCTDFEAYVKENLG 84 (85)
T ss_pred --CHHHHHHHHHHhcc
Confidence 45889999888775
No 233
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.84 E-value=8.9e-05 Score=53.33 Aligned_cols=90 Identities=23% Similarity=0.466 Sum_probs=55.3
Q ss_pred cchhHHhh---cCCCcEEEEEEC-------CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--------CC---C
Q 024107 150 KTFDDLVL---NSHKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------EH---P 208 (272)
Q Consensus 150 ~~~~~~v~---~~~~~~lv~f~~-------~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--------~~---~ 208 (272)
+.|.+++. .++++++|+|++ +||+.|....|.+++.-..... +..++.+.+... .. +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcc
Confidence 34555553 346788999985 4999999999999998888655 677777766432 22 2
Q ss_pred CCcccCCCeEEEEeCCCCcCceEeeCC--CCHHHHHHHHH
Q 024107 209 KLQVEEYPTLLFYPAGDKANPIKVSAR--SSSKNIAAFIK 246 (272)
Q Consensus 209 ~~~v~~~P~l~~~~~~~~~~~~~~~g~--~~~~~l~~~i~ 246 (272)
.++++++|||+-+..++ +..+. .+.+.|..|+.
T Consensus 84 ~~~l~~IPTLi~~~~~~-----rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGE-----RLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp CC---SSSEEEECTSS------EEEHHHHH-HHHHHHHHH
T ss_pred eeeeeecceEEEECCCC-----ccchhhhccHHHHHHHhc
Confidence 57999999999997763 33332 44455555543
No 234
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.81 E-value=9.1e-05 Score=54.15 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=49.3
Q ss_pred cccCCcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcce
Q 024107 27 VHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS 102 (272)
Q Consensus 27 ~~~~~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~ 102 (272)
.-.++++++|.|+++| ++|+.+.... .++++.....+..+.++.+..+ .-....| .++ ||+ .+++.++..
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td---~~~~~~g-~~v-Pti-vFld~~g~v 92 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD---KNLSPDG-QYV-PRI-MFVDPSLTV 92 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC---CCcCccC-ccc-CeE-EEECCCCCC
Confidence 4477899999999999 9999988865 4556666545665566654221 1111234 466 999 888766544
Q ss_pred eecCCC
Q 024107 103 KFLLES 108 (272)
Q Consensus 103 ~~~~~g 108 (272)
..++.|
T Consensus 93 i~~i~G 98 (130)
T cd02960 93 RADITG 98 (130)
T ss_pred cccccc
Confidence 333333
No 235
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.81 E-value=3.7e-05 Score=51.83 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=49.4
Q ss_pred cccCCcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEe
Q 024107 27 VHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 97 (272)
Q Consensus 27 ~~~~~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~ 97 (272)
....+++++|.|+++| +.|+.+...+ .++.+.+..++.++.+|.+.. .......+ .++ |++ .+++
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~---~~~~~~~~-~~~-P~~-~~ld 81 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDE---DPNAQFDR-QGY-PTF-FFLD 81 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTH---HHHHHHHH-CSS-SEE-EEEE
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCC---ChhHHhCC-ccC-CEE-EEeC
Confidence 3467799999999999 9999998887 566665666799999999876 33333222 567 999 7775
No 236
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.81 E-value=0.00016 Score=56.28 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=55.0
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHH-hcCCCceEEEEEeCCCC------------------------------CC-
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASAN------------------------------EH- 207 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~-~~~~~~v~~~~id~~~~------------------------------~~- 207 (272)
++..+|.|||.||++|+...|.+.+++.+ +.-..--....||.++. ..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 89999999999999999999999999653 21100001133344321 11
Q ss_pred CCCcccCCCeE-EEEeCCCCcCceEeeCCCCHHHHHH
Q 024107 208 PKLQVEEYPTL-LFYPAGDKANPIKVSARSSSKNIAA 243 (272)
Q Consensus 208 ~~~~v~~~P~l-~~~~~~~~~~~~~~~g~~~~~~l~~ 243 (272)
..+++.++|+. +++...+.+ ..++.|..+.+.+.+
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkV-v~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKV-KFVKEGALSDSDIQT 174 (184)
T ss_pred HhcCCCCCCceEEEECCCCcE-EEEEeCCCCHHHHHH
Confidence 13578899887 677665555 447889888776655
No 237
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.81 E-value=0.00018 Score=49.96 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=64.4
Q ss_pred ccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcce
Q 024107 24 SASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS 102 (272)
Q Consensus 24 f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~ 102 (272)
.++++.....++|.||.++ . .....|.++|..+++.+.|+.+. . .++.+++++.. |++ .++......
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~---~~~~~~~~~~~--~~i-~l~~~~~~~ 77 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---D---KEVAKKLKVKP--GSV-VLFKPFEEE 77 (97)
T ss_pred HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---h---HHHHHHcCCCC--Cce-EEeCCcccC
Confidence 4556777888999999887 4 45678999999999778898766 2 46777777654 788 666554334
Q ss_pred eecCCCCCChHHHHHHHHH
Q 024107 103 KFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 103 ~~~~~g~~~~~~i~~fi~~ 121 (272)
...|.|..+.++|.+|+..
T Consensus 78 ~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CccCCCCCCHHHHHHHHHh
Confidence 4446888889999999875
No 238
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.79 E-value=3.4e-05 Score=57.63 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=51.6
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCC-ceEEEEEeCCCC--CC-------------------------CCC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN--EH-------------------------PKL 210 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~id~~~~--~~-------------------------~~~ 210 (272)
.++.+.++|.+.||++|+.+.|.+..+.+.++... .+.+..|+.+.. +. .+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 47899999999999999999999999999987743 366666665543 11 135
Q ss_pred cccCCCeEEEEeCCC
Q 024107 211 QVEEYPTLLFYPAGD 225 (272)
Q Consensus 211 ~v~~~P~l~~~~~~~ 225 (272)
.|.+.|++.+.+..+
T Consensus 112 ~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 EVKGIPALVILKPDG 126 (157)
T ss_pred ccCcCceeEEecCCC
Confidence 788999999885554
No 239
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.76 E-value=0.00025 Score=50.75 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=74.3
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHH---hcCCCceEEEEEeCCCCC-C-CCCcccC--CC
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH---FKGLDNLVIAKIDASANE-H-PKLQVEE--YP 216 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~---~~~~~~v~~~~id~~~~~-~-~~~~v~~--~P 216 (272)
|+.++.++..... ..+.+..++|+++ ..-......+.++|+. +++ ++.|+.+|.+... . ..++++. .|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 4567888887755 5555555555533 3346788999999999 998 8999999999983 3 3667776 89
Q ss_pred eEEEEeCCCCcCceE-eeCCCCHHHHHHHHHHHcC
Q 024107 217 TLLFYPAGDKANPIK-VSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 217 ~l~~~~~~~~~~~~~-~~g~~~~~~l~~~i~~~~~ 250 (272)
.+.+.......+ .. +.+..+.++|.+|+.+.+.
T Consensus 76 ~i~i~~~~~~~K-y~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMYL-FPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcCc-CCCCccccCHHHHHHHHHHHhc
Confidence 999986643221 12 5678899999999998764
No 240
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.76 E-value=0.00016 Score=50.29 Aligned_cols=86 Identities=15% Similarity=0.329 Sum_probs=62.3
Q ss_pred hhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCcccCCCeEEEEeCCCCcCce
Q 024107 152 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDKANPI 230 (272)
Q Consensus 152 ~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~v~~~P~l~~~~~~~~~~~~ 230 (272)
+.+++ .....++|-|+..+|+ .....+.++|..++. .+.|+.+.-. ++ .++.+ .-|++++|+..... ++
T Consensus 10 l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~~~--~~~~~~~~-~~~~i~l~~~~~~~-~~ 79 (97)
T cd02981 10 LEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTSDK--EVAKKLKV-KPGSVVLFKPFEEE-PV 79 (97)
T ss_pred HHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEEChH--HHHHHcCC-CCCceEEeCCcccC-Cc
Confidence 44443 5677788888888876 466789999999987 6888777632 23 23444 34889999765333 45
Q ss_pred EeeCCCCHHHHHHHHHH
Q 024107 231 KVSARSSSKNIAAFIKE 247 (272)
Q Consensus 231 ~~~g~~~~~~l~~~i~~ 247 (272)
.|.|..+.+.|.+||..
T Consensus 80 ~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 80 EYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 79999999999999975
No 241
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.74 E-value=0.00018 Score=54.05 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=60.7
Q ss_pred cCCcceEEEEEEc-c-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCccc------------------chhHHhhcCCC-
Q 024107 29 SSPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDL------------------AKPFLTLFGLE- 86 (272)
Q Consensus 29 ~~~~~~~v~fy~~-~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~~~------------------~~~l~~~~~i~- 86 (272)
-++++++|.||+. | ++|....|.+.++++.++++ +.++.|..+.... ...+.+.+|+.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3567899999999 9 99999999999999997754 7776666554322 24688889988
Q ss_pred --------CCCceEEEEEeCCcceeecCCCCCC
Q 024107 87 --------ESKNTVVTAFDNKAISKFLLESDLT 111 (272)
Q Consensus 87 --------~~~P~i~~~~~~~~~~~~~~~g~~~ 111 (272)
++ |++ .+++.++...+...|..+
T Consensus 106 ~~~~~~~~~~-P~~-~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGI-PTT-FLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSS-SEE-EEEETTSBEEEEEESSBT
T ss_pred ccccccCCee-cEE-EEEECCCEEEEEEeCCCC
Confidence 88 999 677766655665555433
No 242
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00054 Score=56.60 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=89.8
Q ss_pred hhHHHHHhhcCCCceEeeCcccccccccCC---cceEEEEEEcc-----cchHHHHHHHHHHHHHhcC--------ceEE
Q 024107 2 DKILQFLNYNKFPLVTKLTDINSASVHSSP---IKLQVYVFAKA-----DDLKSLLEPLEDIARNFKG--------KIMF 65 (272)
Q Consensus 2 ~~l~~fi~~~s~~~v~~l~~~~f~~~~~~~---~~~~v~fy~~~-----~~c~~~~~~~~~~a~~~~~--------~i~~ 65 (272)
|++.+..+-.+..-|..+++++|.+++..+ ...+|+|-+.. .-|.+....+.-+|..+.. ++-|
T Consensus 28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF 107 (331)
T KOG2603|consen 28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF 107 (331)
T ss_pred HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence 345555555778889999999999988644 23356666555 3578888899989887762 5899
Q ss_pred EEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeec---C---CCCCChHHHHHHHHHHhcCc
Q 024107 66 TAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFL---L---ESDLTPSNIEEFCSRLLHGT 126 (272)
Q Consensus 66 ~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~---~---~g~~~~~~i~~fi~~~~~~~ 126 (272)
..||.++. ++..+.++++.. |++ .+|.+..+.+-+ + +-...+|++.+|+++...-+
T Consensus 108 ~~Vd~~e~---p~~Fq~l~ln~~-P~l-~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 108 CMVDYDES---PQVFQQLNLNNV-PHL-VLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN 169 (331)
T ss_pred EEEecccc---HHHHHHhcccCC-CeE-EEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence 99999999 999999999999 999 888655433221 1 22255999999999986543
No 243
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.73 E-value=9.8e-05 Score=56.68 Aligned_cols=85 Identities=25% Similarity=0.389 Sum_probs=70.6
Q ss_pred eEEec-ccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC--CCCcccCCCeEEE
Q 024107 144 VQIVV-GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLF 220 (272)
Q Consensus 144 v~~l~-~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~--~~~~v~~~P~l~~ 220 (272)
...+. ..+|-+.+ ..+..|+++||-|.-..|+-|-..++.+|+.+-+ .+|+.||+....+ .+++|..+|++.+
T Consensus 68 y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 68 YEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred EEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 45555 45666665 4567899999999999999999999999999985 7999999999854 4899999999999
Q ss_pred EeCCCCcCceEeeC
Q 024107 221 YPAGDKANPIKVSA 234 (272)
Q Consensus 221 ~~~~~~~~~~~~~g 234 (272)
|++|.... ++.|
T Consensus 144 ~k~g~~~D--~iVG 155 (211)
T KOG1672|consen 144 FKNGKTVD--YVVG 155 (211)
T ss_pred EEcCEEEE--EEee
Confidence 99998765 4554
No 244
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.72 E-value=0.00032 Score=56.31 Aligned_cols=82 Identities=6% Similarity=0.079 Sum_probs=61.8
Q ss_pred CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCC---------CcccchhHHhhcCCCCCCceEEEEEeCCc
Q 024107 31 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA---------DEDLAKPFLTLFGLEESKNTVVTAFDNKA 100 (272)
Q Consensus 31 ~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~---------~~~~~~~l~~~~~i~~~~P~i~~~~~~~~ 100 (272)
.+.-+++||... +.|+...|+++.+++++.=.+..+.+|.. .. ..+.+++||..+ |++ .+++..+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~---~g~~~~l~v~~~-Pal-~Lv~~~~ 194 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPD---PGQAKRLGVKVT-PAL-FLVNPNT 194 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCC---HHHHHHcCCCcC-CEE-EEEECCC
Confidence 345689999999 99999999999999999644444555432 22 689999999999 999 7777665
Q ss_pred ceeecC-CCCCChHHHHH
Q 024107 101 ISKFLL-ESDLTPSNIEE 117 (272)
Q Consensus 101 ~~~~~~-~g~~~~~~i~~ 117 (272)
...++. .|-++.++|.+
T Consensus 195 ~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELED 212 (215)
T ss_pred CeEEEEeeecCCHHHHHH
Confidence 444433 67788887764
No 245
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.71 E-value=0.00088 Score=49.33 Aligned_cols=106 Identities=12% Similarity=0.193 Sum_probs=73.2
Q ss_pred eEEecccch-hHHhhcCCCcEEEEEECC--CChh--HHHhHHHHHHHHHHhcCCCc-eEEEEEeCCCC-CC-CCCccc--
Q 024107 144 VQIVVGKTF-DDLVLNSHKDVLLEVYTP--WCVT--CETTSKQIEKLAKHFKGLDN-LVIAKIDASAN-EH-PKLQVE-- 213 (272)
Q Consensus 144 v~~l~~~~~-~~~v~~~~~~~lv~f~~~--~C~~--c~~~~~~~~~~a~~~~~~~~-v~~~~id~~~~-~~-~~~~v~-- 213 (272)
+.+|+.++. ++.- ..+..-+|.|.-. .|.. -......+.++|+.+++ + +.|+.+|.+.. .+ ..+++.
T Consensus 4 ~~~l~~~~~~~~~C-~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg--k~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 4 IIELTSEDVFEETC-EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK--KPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred eEEecCHHHHHhhc-cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEeCcccHHHHHHcCCCcc
Confidence 667777655 3322 2233334444221 1222 25677889999999999 7 99999999998 44 467875
Q ss_pred CCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCcCC
Q 024107 214 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 253 (272)
Q Consensus 214 ~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 253 (272)
.+|+++++...+. +...+.|..+.++|.+|+.+.+.-..
T Consensus 81 ~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCc
Confidence 5899999977543 22236789999999999999986543
No 246
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.70 E-value=9.1e-05 Score=56.25 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=36.9
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~ 203 (272)
+++++|.||++||+ |....|.++++.+++++. ++.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence 68999999999999 999999999999999764 5888888653
No 247
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.69 E-value=0.00079 Score=48.50 Aligned_cols=92 Identities=12% Similarity=0.087 Sum_probs=68.6
Q ss_pred cCCcceEEEEEEc----c-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCc---
Q 024107 29 SSPIKLQVYVFAK----A-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA--- 100 (272)
Q Consensus 29 ~~~~~~~v~fy~~----~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~--- 100 (272)
..+|..+|+++++ | ..|+.... =.++.+.++..+.+...|....+. .+++..+++.++ |++ .+....+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~~~~~-P~~-~~l~~~~~~~ 90 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEG-YRVSQALRERTY-PFL-AMIMLKDNRM 90 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHH-HHHHHHhCCCCC-CEE-EEEEecCCce
Confidence 5678999999999 6 66654321 155666666779999999986644 799999999999 999 6663222
Q ss_pred ceeecCCCCCChHHHHHHHHHHhc
Q 024107 101 ISKFLLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 101 ~~~~~~~g~~~~~~i~~fi~~~~~ 124 (272)
....++.|.++++++...+....+
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 123456899999999999988754
No 248
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.69 E-value=3.4e-05 Score=56.70 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=43.3
Q ss_pred ccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC---CcccCCCeEEEEeC
Q 024107 149 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK---LQVEEYPTLLFYPA 223 (272)
Q Consensus 149 ~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~---~~v~~~P~l~~~~~ 223 (272)
.+....+....+...++.|..+||+.|....|.+.++++... ++.+-.+..+.+ ++ .+ .+..++|+++++..
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 333333333335567888999999999999999999999864 455555555544 32 33 37888999999965
Q ss_pred C
Q 024107 224 G 224 (272)
Q Consensus 224 ~ 224 (272)
+
T Consensus 107 ~ 107 (129)
T PF14595_consen 107 D 107 (129)
T ss_dssp T
T ss_pred C
Confidence 5
No 249
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.67 E-value=0.00031 Score=50.60 Aligned_cols=91 Identities=9% Similarity=0.079 Sum_probs=65.2
Q ss_pred hcCCCcEEEEEECC----CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC---CC-CCcccCCCeEEEEe-CCCCc
Q 024107 157 LNSHKDVLLEVYTP----WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---HP-KLQVEEYPTLLFYP-AGDKA 227 (272)
Q Consensus 157 ~~~~~~~lv~f~~~----~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~---~~-~~~v~~~P~l~~~~-~~~~~ 227 (272)
....|.++|++|++ ||..|+.... =.++.+-+.. ++.+...|+...+ ++ .+++.++|++.++. .++..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 45688999999999 8899965541 1334444444 6888888998763 33 67999999999983 12221
Q ss_pred C-ceEeeCCCCHHHHHHHHHHHcC
Q 024107 228 N-PIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 228 ~-~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
. .-+..|..+.+.|+..+...+.
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 1 2268999999999999987654
No 250
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.64 E-value=0.00072 Score=53.31 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEe-------------CC--CcccchhHHhhcCCCCCCceEE
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVD-------------IA--DEDLAKPFLTLFGLEESKNTVV 93 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd-------------~~--~~~~~~~l~~~~~i~~~~P~i~ 93 (272)
++++++|.||++| +.|++..|.+.++.+.....+.++..| .. ......++.+.||+... |+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~-P~~- 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI-PYG- 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc-ceE-
Confidence 5678999999999 999999999999987764334443311 00 00001467788899888 998
Q ss_pred EEEeCCcceeecCCCC-CChHHHHHHHHHHhcC
Q 024107 94 TAFDNKAISKFLLESD-LTPSNIEEFCSRLLHG 125 (272)
Q Consensus 94 ~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~ 125 (272)
.+++.++...+ .|. .+.+.+.+.+.....|
T Consensus 151 ~lID~~G~I~~--~g~~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 151 VLLDQDGKIRA--KGLTNTREHLESLLEADREG 181 (189)
T ss_pred EEECCCCeEEE--ccCCCCHHHHHHHHHHHHcC
Confidence 77776544444 343 4567777777765444
No 251
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.63 E-value=0.00017 Score=53.77 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=57.1
Q ss_pred CCcEEEEEE-CCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----------------------CCcccCC
Q 024107 160 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----------------------KLQVEEY 215 (272)
Q Consensus 160 ~~~~lv~f~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~----------------------~~~v~~~ 215 (272)
+++++|+|| +.||+.|....+.+.++..++... ++.+..|..+.. .+. .+++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 688999999 589999999999999999998754 577777766442 111 1355555
Q ss_pred ---------CeEEEEeCCCCcCceEeeCCCCHHHHHH
Q 024107 216 ---------PTLLFYPAGDKANPIKVSARSSSKNIAA 243 (272)
Q Consensus 216 ---------P~l~~~~~~~~~~~~~~~g~~~~~~l~~ 243 (272)
|+.+++..++.+ ...+.|......+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v-~~~~~g~~~~~~~~~ 137 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKI-VKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccCCcceeEEEECCCCEE-EEEEecCCccchHHH
Confidence 888888655544 225777766555544
No 252
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00059 Score=48.20 Aligned_cols=72 Identities=17% Similarity=0.383 Sum_probs=53.3
Q ss_pred cchhHHhh--cCCCcEEEEEEC--------CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC--------CC-CC
Q 024107 150 KTFDDLVL--NSHKDVLLEVYT--------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------HP-KL 210 (272)
Q Consensus 150 ~~~~~~v~--~~~~~~lv~f~~--------~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~--------~~-~~ 210 (272)
+.|.+++. .+++.++|+|++ +||+.|....|.+.++-+.... ++.|..+++.+-. +. ..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence 44555553 235568899986 5999999999999999886655 7899999887642 11 22
Q ss_pred cc-cCCCeEEEEeC
Q 024107 211 QV-EEYPTLLFYPA 223 (272)
Q Consensus 211 ~v-~~~P~l~~~~~ 223 (272)
++ +++||++=|++
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 44 89999999975
No 253
>PLN02412 probable glutathione peroxidase
Probab=97.58 E-value=0.00062 Score=52.56 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=37.5
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 71 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~ 71 (272)
.+++++|.||++| +.|.+..|.+.++.++|.++ +.+..|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 4578999999999 99999999999999999965 899999875
No 254
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.57 E-value=0.00027 Score=63.47 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=77.2
Q ss_pred EeeCcc-cccccccCCc--ceEEEEEEcc-cchHHHHHHHH---HHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCC
Q 024107 17 TKLTDI-NSASVHSSPI--KLQVYVFAKA-DDLKSLLEPLE---DIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEES 88 (272)
Q Consensus 17 ~~l~~~-~f~~~~~~~~--~~~v~fy~~~-~~c~~~~~~~~---~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~ 88 (272)
..+++. ..++....++ ++++.||++| -.|+.+.+..- ++..+..+ +...++|.++++. ..++.++||+-+-
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 445555 6666665555 9999999999 99999887543 44444545 8889999885543 3578899999999
Q ss_pred CceEEEEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 89 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 89 ~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
|++ .+|+.++...-...|.++.+.+.+++++.
T Consensus 536 -P~~-~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 -PTY-LFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -CEE-EEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 999 88885544444468889999999999875
No 255
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.56 E-value=0.00045 Score=43.02 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=48.2
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHh---hcCCCCCCceEEEEEeCC
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLT---LFGLEESKNTVVTAFDNK 99 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~---~~~i~~~~P~i~~~~~~~ 99 (272)
++.|+.+| ++|.++.+.+.++ ......+.+..++++.. ..... .+++... |++ .+++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-P~~-~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDED---PALEKELKRYGVGGV-PTL-VVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCC---hHHhhHHHhCCCccc-cEE-EEEeCC
Confidence 46899999 9999999999999 45555699999999988 45554 7888888 999 777655
No 256
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.56 E-value=0.00015 Score=48.91 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=40.6
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC------CC-CCcccCCCeEEEEeCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE------HP-KLQVEEYPTLLFYPAGD 225 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~------~~-~~~v~~~P~l~~~~~~~ 225 (272)
++.|+++||++|..+.+.+.++. ... .+.+..+|.+.+. +. ..++.++|++ |-+|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 47899999999999999998876 322 4777777776542 21 3477899998 44554
No 257
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0017 Score=48.18 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=71.1
Q ss_pred ccCCcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCccc-------------chhHHhhcCCCCCCc
Q 024107 28 HSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDL-------------AKPFLTLFGLEESKN 90 (272)
Q Consensus 28 ~~~~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~~~~~~-------------~~~l~~~~~i~~~~P 90 (272)
.-.++..+++|-++. ..|.++...+ .++-+-+.+.+.++.+|...++. ..+|++.|+++++ |
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst-P 117 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST-P 117 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC-c
Confidence 345567788888888 9999987765 45555666678888887764432 2589999999999 9
Q ss_pred eEEEEEeCCcceeecCCCCCChHHHHHHHHHHhcC
Q 024107 91 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 125 (272)
Q Consensus 91 ~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~ 125 (272)
++ .+|+..+...+...|.+.++++..-+.=.-.|
T Consensus 118 tf-vFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 118 TF-VFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred eE-EEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99 89987766667678889888877655544333
No 258
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.52 E-value=0.0013 Score=49.87 Aligned_cols=41 Identities=12% Similarity=0.005 Sum_probs=36.7
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDI 70 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~ 70 (272)
++++++|.|+++| +.|....|.+.++++++.+ .+.|..|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 4567899999999 9999999999999999985 489999987
No 259
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.52 E-value=0.001 Score=54.63 Aligned_cols=91 Identities=9% Similarity=0.011 Sum_probs=68.1
Q ss_pred cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc------chhHHhhcCCCCCCceEEEEEeCCcceee
Q 024107 32 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL------AKPFLTLFGLEESKNTVVTAFDNKAISKF 104 (272)
Q Consensus 32 ~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~------~~~l~~~~~i~~~~P~i~~~~~~~~~~~~ 104 (272)
+.-+|+||... +.|+++.|+++.+++++.=.+..+.+|..-... ...+++++|+..+ |++ .+.+..++..+
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~-Pal-~Lv~~~t~~~~ 228 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF-PAL-YLVNPKSQKMS 228 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC-ceE-EEEECCCCcEE
Confidence 35689999998 999999999999999998555556666552200 0358899999999 999 77776655444
Q ss_pred cC-CCCCChHHHHHHHHHHhc
Q 024107 105 LL-ESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 105 ~~-~g~~~~~~i~~fi~~~~~ 124 (272)
+. .|-++.++|.+=+.....
T Consensus 229 pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 229 PLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEeeccCCHHHHHHHHHHHHh
Confidence 43 678998888777666654
No 260
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.51 E-value=0.00074 Score=48.26 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=67.2
Q ss_pred ecccchhHHhhcCCCcEEEEEE----CCCChhHHHhHHHHHHHHHHhc-CCCceEEEEEeCCCC-CC-CCCccc--C--C
Q 024107 147 VVGKTFDDLVLNSHKDVLLEVY----TPWCVTCETTSKQIEKLAKHFK-GLDNLVIAKIDASAN-EH-PKLQVE--E--Y 215 (272)
Q Consensus 147 l~~~~~~~~v~~~~~~~lv~f~----~~~C~~c~~~~~~~~~~a~~~~-~~~~v~~~~id~~~~-~~-~~~~v~--~--~ 215 (272)
++.++..... ..+.++.|+ +..-..-......+.++|+.++ + ++.|+.+|.+.. .. ..++++ . .
T Consensus 4 ~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 4 RTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 4566666653 344455554 2344455678899999999999 7 799999999987 33 456776 4 9
Q ss_pred CeEEEEeCCCCcCceEeeCCC-CHHHHHHHHHHH
Q 024107 216 PTLLFYPAGDKANPIKVSARS-SSKNIAAFIKEQ 248 (272)
Q Consensus 216 P~l~~~~~~~~~~~~~~~g~~-~~~~l~~~i~~~ 248 (272)
|.+.++..++ .+ ....+.. +.++|.+|+.+.
T Consensus 79 P~~~i~~~~~-~K-Y~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KK-YVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-Cc-cCCCcccCCHHHHHHHHHHh
Confidence 9999987543 22 1246677 999999999875
No 261
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.48 E-value=0.00081 Score=47.58 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=55.8
Q ss_pred CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCC-CcccchhHHhhcC--CCCCCceEEEEEeCC
Q 024107 31 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFG--LEESKNTVVTAFDNK 99 (272)
Q Consensus 31 ~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~-~~~~~~~l~~~~~--i~~~~P~i~~~~~~~ 99 (272)
++++++.||++| ++|+.+.|.+.++++.+...+.+..+|.. .. +.+...++ +..+ |++ .++..+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~-p~~-~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDEN---PDLAAEFGVAVRSI-PTL-LLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCC---hHHHHHHhhhhccC-CeE-EEEeCc
Confidence 567888889999 99999999999999999977999999997 56 79999999 8898 999 555444
No 262
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.43 E-value=0.0017 Score=52.97 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=69.0
Q ss_pred ceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc------chhHHhhcCCCCCCceEEEEEeCCcceeec
Q 024107 33 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL------AKPFLTLFGLEESKNTVVTAFDNKAISKFL 105 (272)
Q Consensus 33 ~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~------~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~ 105 (272)
.-+++||... +.|.++.|++..+++++.=.+..+.+|..-... .....+++|+..+ |++ .+.+..++..++
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~-PAl-~Lv~~~t~~~~p 222 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF-PAL-MLVDPKSGSVRP 222 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc-ceE-EEEECCCCcEEE
Confidence 5688999998 999999999999999998656666776632200 0347789999999 999 788777655444
Q ss_pred C-CCCCChHHHHHHHHHHhcC
Q 024107 106 L-ESDLTPSNIEEFCSRLLHG 125 (272)
Q Consensus 106 ~-~g~~~~~~i~~fi~~~~~~ 125 (272)
. .|-++.++|.+=+.....+
T Consensus 223 v~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EeeccCCHHHHHHHHHHHHhc
Confidence 3 6788999888777766554
No 263
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.42 E-value=0.0011 Score=43.08 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=50.5
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCCh
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP 112 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~ 112 (272)
+..|+++| ++|+++.+.|.+. .+.+..+|.+.... ..++++.+|+.+. |++ .+. + .. +.| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~v-P~~-~~~--~--~~--~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGV-PVI-VIG--H--KI--IVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcc-cEE-EEC--C--EE--Eee-CCH
Confidence 56799999 9999998888652 37888899886521 1246788999999 999 553 2 22 244 577
Q ss_pred HHHHHHH
Q 024107 113 SNIEEFC 119 (272)
Q Consensus 113 ~~i~~fi 119 (272)
+.|.+|+
T Consensus 67 ~~i~~~i 73 (74)
T TIGR02196 67 EKLDQLL 73 (74)
T ss_pred HHHHHHh
Confidence 8888776
No 264
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.39 E-value=0.0011 Score=45.33 Aligned_cols=96 Identities=26% Similarity=0.345 Sum_probs=69.7
Q ss_pred Eecc-cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC---CC-CCccc----CCC
Q 024107 146 IVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---HP-KLQVE----EYP 216 (272)
Q Consensus 146 ~l~~-~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~---~~-~~~v~----~~P 216 (272)
.+++ .+|.+++ .....++|.|..+--..- .....+.++|...++ .-.++.|||...+ ++ ++.++ .-|
T Consensus 5 ~i~d~KdfKKLL-RTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 5 DISDHKDFKKLL-RTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred cccchHHHHHHH-hhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 3444 6788876 446677777765543333 334488999999999 6799999999853 33 56666 344
Q ss_pred -eEEEEeCCCCcCceEeeCCCCHHHHHHHHHH
Q 024107 217 -TLLFYPAGDKANPIKVSARSSSKNIAAFIKE 247 (272)
Q Consensus 217 -~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 247 (272)
.+..|++|.-.. .|....+..+|+.|+++
T Consensus 81 ~~LkHYKdG~fHk--dYdR~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDGDFHT--EYNRQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCCCccc--cccchhhHHHHHHHhhC
Confidence 366889998765 79999999999999986
No 265
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.35 E-value=0.0013 Score=47.72 Aligned_cols=45 Identities=9% Similarity=0.226 Sum_probs=38.9
Q ss_pred CCcceEEEEEEc-c-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc
Q 024107 30 SPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED 74 (272)
Q Consensus 30 ~~~~~~v~fy~~-~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~ 74 (272)
.+++++|.||.. | +.|....+.+.++..+++. .+.+..|..+..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~ 71 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE 71 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc
Confidence 557999999999 9 9999999999999999985 3888888887553
No 266
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.32 E-value=0.0024 Score=42.26 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=53.5
Q ss_pred EEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCC-CCChH
Q 024107 36 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES-DLTPS 113 (272)
Q Consensus 36 v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g-~~~~~ 113 (272)
|.+++++ +.|..+...+.+++..+ + +.+-.+|..+. +++ .+||+.+. |++ .+ ++ ..++ .| -.+.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~---~~~-~~ygv~~v-Pal-vI-ng--~~~~--~G~~p~~~ 69 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDF---EEI-EKYGVMSV-PAL-VI-NG--KVVF--VGRVPSKE 69 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTH---HHH-HHTT-SSS-SEE-EE-TT--EEEE--ESS--HHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCH---HHH-HHcCCCCC-CEE-EE-CC--EEEE--EecCCCHH
Confidence 3447888 99999999999999999 4 77778887665 566 99999999 999 44 32 1333 67 67888
Q ss_pred HHHHHHH
Q 024107 114 NIEEFCS 120 (272)
Q Consensus 114 ~i~~fi~ 120 (272)
.|.+|+.
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8888874
No 267
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.29 E-value=0.0019 Score=48.96 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=35.7
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA 71 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~ 71 (272)
++++++|.|+++| + |..-.|.+.++++++.+ .+.|..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 3678999999999 7 99999999999999975 4888888764
No 268
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.22 E-value=0.0014 Score=47.48 Aligned_cols=68 Identities=21% Similarity=0.452 Sum_probs=53.1
Q ss_pred CCCcEEEEEECC-CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC-CC----------------------CCccc-
Q 024107 159 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP----------------------KLQVE- 213 (272)
Q Consensus 159 ~~~~~lv~f~~~-~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~-~~----------------------~~~v~- 213 (272)
.+++++|.||+. ||+.|....+.+.++..+++.. ++.+..|..+..+ +. .+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 468999999999 9999999999999999999864 5888888886531 11 13455
Q ss_pred -----CCCeEEEEeCCCCc
Q 024107 214 -----EYPTLLFYPAGDKA 227 (272)
Q Consensus 214 -----~~P~l~~~~~~~~~ 227 (272)
.+|+++++..++.+
T Consensus 103 ~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTTSEESEEEEEEETTSBE
T ss_pred ccCCceEeEEEEECCCCEE
Confidence 78888888776643
No 269
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.20 E-value=0.0011 Score=49.53 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=39.0
Q ss_pred CCCcEEEEEECCCChh-HHHhHHHHHHHHHHhcCCC--ceEEEEEeCCC
Q 024107 159 SHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKGLD--NLVIAKIDASA 204 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~-c~~~~~~~~~~a~~~~~~~--~v~~~~id~~~ 204 (272)
.+++++|.||++||+. |....+.+.++..+++..+ ++.+..|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999999997 9999999999999997642 48888887654
No 270
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.15 E-value=0.0067 Score=47.01 Aligned_cols=105 Identities=20% Similarity=0.321 Sum_probs=77.5
Q ss_pred CCCCeEEecccchhHHhhcC--CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCe
Q 024107 140 TNANVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT 217 (272)
Q Consensus 140 ~~~~v~~l~~~~~~~~v~~~--~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~ 217 (272)
.-+.|..|++..|.+.|... +-.|+|..|...-+.|.-+...++.+|.+|. .++|..+-.... ++.|--...||
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp---~iKFVki~at~c-IpNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP---QIKFVKIPATTC-IPNYPESNLPT 164 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC---cceEEecccccc-cCCCcccCCCe
Confidence 45579999999999888543 4578999999999999999999999999998 477777654433 23344456799
Q ss_pred EEEEeCCCCcC----ceEeeCC-CCHHHHHHHHHHH
Q 024107 218 LLFYPAGDKAN----PIKVSAR-SSSKNIAAFIKEQ 248 (272)
Q Consensus 218 l~~~~~~~~~~----~~~~~g~-~~~~~l~~~i~~~ 248 (272)
+++|..|.-.+ +..+.|. .+.+++..++-+.
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 99999986543 2224444 5567777777654
No 271
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.13 E-value=0.0017 Score=48.64 Aligned_cols=68 Identities=9% Similarity=0.110 Sum_probs=49.8
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc---eEEEEEeCCCccc----------------------chhHHhhc
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK---IMFTAVDIADEDL----------------------AKPFLTLF 83 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~---i~~~~vd~~~~~~----------------------~~~l~~~~ 83 (272)
.++.+.++|-+-| ++|+++.|.+.+..+..... +-++.|..+.... ..+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4578999999999 99999999998888888765 4444444443221 45677888
Q ss_pred CCCCCCceEEEEEeCC
Q 024107 84 GLEESKNTVVTAFDNK 99 (272)
Q Consensus 84 ~i~~~~P~i~~~~~~~ 99 (272)
++.+. |++ .+..++
T Consensus 112 ~v~~i-P~l-~i~~~d 125 (157)
T KOG2501|consen 112 EVKGI-PAL-VILKPD 125 (157)
T ss_pred ccCcC-cee-EEecCC
Confidence 88888 888 555443
No 272
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00025 Score=55.86 Aligned_cols=76 Identities=25% Similarity=0.449 Sum_probs=65.3
Q ss_pred cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCCcCceEeeCC
Q 024107 158 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSAR 235 (272)
Q Consensus 158 ~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~~~~~~~~g~ 235 (272)
...+..++.||++||..|..+...+..+++..+ ++.+..++.+.. ++. .+.+...|.+.++..|.++. +..|.
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~--~l~~~ 89 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD--RLSGA 89 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh--hhhcc
Confidence 367889999999999999999999999999994 799999999998 775 77999999999998888775 56665
Q ss_pred CCH
Q 024107 236 SSS 238 (272)
Q Consensus 236 ~~~ 238 (272)
...
T Consensus 90 ~~~ 92 (227)
T KOG0911|consen 90 DPP 92 (227)
T ss_pred CcH
Confidence 443
No 273
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.13 E-value=0.0012 Score=42.78 Aligned_cols=65 Identities=15% Similarity=0.367 Sum_probs=43.2
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCC----cccCCCeEEEEeCCCCcCceEeeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKL----QVEEYPTLLFYPAGDKANPIKVSARSS 237 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~----~v~~~P~l~~~~~~~~~~~~~~~g~~~ 237 (272)
+++|+++||+.|..+...+.+. ++.+..++++.+ .. ..+ +..++|++++ +|. ...| .+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~-----~i~g-~~ 65 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE-----HLSG-FR 65 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE-----EEec-CC
Confidence 5789999999999988777652 466667777665 22 222 5678999975 332 2334 45
Q ss_pred HHHHHHH
Q 024107 238 SKNIAAF 244 (272)
Q Consensus 238 ~~~l~~~ 244 (272)
...|.++
T Consensus 66 ~~~l~~~ 72 (73)
T cd02976 66 PDKLRAL 72 (73)
T ss_pred HHHHHhh
Confidence 5666655
No 274
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.12 E-value=0.0019 Score=48.44 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCcE-EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 160 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 160 ~~~~-lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
++++ +++|++.||+.|+...+.+.++..++... ++.++.|..+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCH
Confidence 3455 55456999999999999999999999753 588888887765
No 275
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.07 E-value=0.0054 Score=47.82 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEE------EEEeCCCcc-----------------c---------c
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMF------TAVDIADED-----------------L---------A 76 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~------~~vd~~~~~-----------------~---------~ 76 (272)
.++..+|.|++.| ++|+.-+|.+..++.+ .+.+ ..||.++.. + .
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 3788999999999 9999999999999754 1333 444444310 0 1
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHH
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCS 120 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~ 120 (272)
..+...+|+.+. |+...+++.++...+...|..+.+++.+.+.
T Consensus 135 g~v~~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 135 GAVKNAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred chHHHhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 245678888888 7773477776666777789999888877433
No 276
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.06 E-value=0.001 Score=50.49 Aligned_cols=75 Identities=15% Similarity=0.374 Sum_probs=49.1
Q ss_pred cccchhHHhhcCCCcEEEEEECCCChhHHHhHHH-H--HHHHHHhcCCCceEEEEEeCCCC-CCC-CC--------cccC
Q 024107 148 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN-EHP-KL--------QVEE 214 (272)
Q Consensus 148 ~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~-~--~~~a~~~~~~~~v~~~~id~~~~-~~~-~~--------~v~~ 214 (272)
..+.|... ...+++++|.++++||..|..|... + .++|..+.. ++.-+.+|.++. ++. .| +..+
T Consensus 26 ~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gG 102 (163)
T PF03190_consen 26 GEEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGG 102 (163)
T ss_dssp SHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---
T ss_pred CHHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCC
Confidence 33445553 4669999999999999999999864 3 577888876 788999999988 664 33 5679
Q ss_pred CCeEEEEeCCC
Q 024107 215 YPTLLFYPAGD 225 (272)
Q Consensus 215 ~P~l~~~~~~~ 225 (272)
+|+.++.....
T Consensus 103 wPl~vfltPdg 113 (163)
T PF03190_consen 103 WPLTVFLTPDG 113 (163)
T ss_dssp SSEEEEE-TTS
T ss_pred CCceEEECCCC
Confidence 99999985544
No 277
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.06 E-value=0.0019 Score=43.82 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=50.7
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC-----CC-CCc--ccCCCeEEEEeCCCCcCceEeeCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----HP-KLQ--VEEYPTLLFYPAGDKANPIKVSAR 235 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~-----~~-~~~--v~~~P~l~~~~~~~~~~~~~~~g~ 235 (272)
+++|+.+||++|..++..+.++..... .+.+..+|+.... +. ..+ ..++|.++ -+|+. .|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~------ig- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH------VG- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE------ec-
Confidence 678999999999999998888765543 3666677776431 21 223 36889983 35542 22
Q ss_pred CCHHHHHHHHHHHcCc
Q 024107 236 SSSKNIAAFIKEQLKE 251 (272)
Q Consensus 236 ~~~~~l~~~i~~~~~~ 251 (272)
..++|.++++++.+.
T Consensus 70 -G~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 70 -GCTDFEQLVKENFDI 84 (86)
T ss_pred -CHHHHHHHHHhcccc
Confidence 348888888887653
No 278
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.013 Score=41.93 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=73.0
Q ss_pred cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecC-
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL- 106 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~- 106 (272)
+..+.+++.|=..| +.|-++...+.++|+...+-..++.+|.++- +++.+-|++... |++ ++|-++..-+..+
T Consensus 21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV---~~~~~~~~l~~p-~tv-mfFfn~kHmkiD~g 95 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV---PDFVKMYELYDP-PTV-MFFFNNKHMKIDLG 95 (142)
T ss_pred ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh---hhhhhhhcccCC-ceE-EEEEcCceEEEeeC
Confidence 44466777888999 9999999999999999998888899999988 899999999998 999 6665544444433
Q ss_pred CCC--------CChHHHHHHHHHHhcCc
Q 024107 107 ESD--------LTPSNIEEFCSRLLHGT 126 (272)
Q Consensus 107 ~g~--------~~~~~i~~fi~~~~~~~ 126 (272)
.|+ .+.+.+..-+.-+..|.
T Consensus 96 tgdn~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 96 TGDNNKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHhh
Confidence 222 45777777777776654
No 279
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.01 E-value=0.0027 Score=48.15 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=36.3
Q ss_pred CCCcEEEEEECC-CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 159 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 159 ~~~~~lv~f~~~-~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
.+++++|.||+. ||+.|....+.+.++.+++++. ++.+..|..+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 467899999975 7888999999999999998764 57888887654
No 280
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.98 E-value=0.0056 Score=43.17 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=63.1
Q ss_pred CcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeC
Q 024107 20 TDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 98 (272)
Q Consensus 20 ~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~ 98 (272)
+.+..++++......+|.||.+. .. ....|.++|..+++...|+.... ..+...+++ . |++ .++.+
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~~---~~~~F~~vA~~~R~d~~F~~~~~------~~~~~~~~~--~-~~i-vl~~p 73 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDSK---LLSEFLKAADTLRESFRFAHTSD------KQLLEKYGY--G-EGV-VLFRP 73 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCch---HHHHHHHHHHhhhhcCEEEEECh------HHHHHhcCC--C-Cce-EEEec
Confidence 34446666777778888999887 43 45678999999987788866332 357788888 5 777 56632
Q ss_pred C------cceeecCCCCCChHHHHHHHHH
Q 024107 99 K------AISKFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 99 ~------~~~~~~~~g~~~~~~i~~fi~~ 121 (272)
. ......|.|+.+.+.|.+|+..
T Consensus 74 ~~~~~k~de~~~~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 74 PRLSNKFEDSSVKFDGDLDSSKIKKFIRE 102 (104)
T ss_pred hhhhcccCcccccccCcCCHHHHHHHHHh
Confidence 1 1223346888899999999986
No 281
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.98 E-value=0.011 Score=48.09 Aligned_cols=79 Identities=16% Similarity=0.306 Sum_probs=54.3
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC----------------------------------
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA---------------------------------- 204 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~---------------------------------- 204 (272)
+.+..++.|..|.|++|+.+.+.+.++.+. ++.+..+....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 467789999999999999999888776431 23332221110
Q ss_pred ----------C-CC-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHH
Q 024107 205 ----------N-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 205 ----------~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
+ .+ .+++|+++|+++ +.+|. ...|..+.+.|.++|++.
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~-----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGT-----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHHcCCccccEEE-EcCCe-----EeeCCCCHHHHHHHHHHc
Confidence 0 00 023789999998 66664 457889999999999864
No 282
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.94 E-value=0.0026 Score=42.44 Aligned_cols=56 Identities=11% Similarity=0.247 Sum_probs=39.4
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----CCcccCCCeEEEEeCCC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KLQVEEYPTLLFYPAGD 225 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~----~~~v~~~P~l~~~~~~~ 225 (272)
.+.-+++|+.+||++|...+..|... ++.+-.+|++.+ +.. ..+...+|.++ -+|.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCE
Confidence 44557889999999999999888643 466667777766 222 23678899984 3554
No 283
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.94 E-value=0.01 Score=54.80 Aligned_cols=98 Identities=11% Similarity=0.135 Sum_probs=74.3
Q ss_pred hhHHhhcCCCc-EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcC
Q 024107 152 FDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKAN 228 (272)
Q Consensus 152 ~~~~v~~~~~~-~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~ 228 (272)
+.+.+..-.++ .++.|+.+.|..|..+...+++++ .+.+ ++.+-..|...+ +. .++++...|++.++..++...
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~--~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~ 433 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE--KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYT 433 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC--cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCccc
Confidence 44444334566 477888889999999999999998 4444 788888887776 44 488999999999996444333
Q ss_pred ceEeeCCCCHHHHHHHHHHHcCcC
Q 024107 229 PIKVSARSSSKNIAAFIKEQLKEK 252 (272)
Q Consensus 229 ~~~~~g~~~~~~l~~~i~~~~~~~ 252 (272)
.++|.|-..-..+..||...+...
T Consensus 434 ~i~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 434 GLKFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred ceEEEecCccHhHHHHHHHHHHhc
Confidence 689999999888888888876554
No 284
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.94 E-value=0.0025 Score=47.93 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=35.5
Q ss_pred CcEEEEEE-CCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 161 KDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 161 ~~~lv~f~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
++++|.|| ++||+.|....+.+.++.++++.. ++.+..|..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCC
Confidence 67777777 899999999999999999999753 57787777654
No 285
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.91 E-value=0.0026 Score=42.66 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=55.6
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHH
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNI 241 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l 241 (272)
+++|..+.|.-|..+...+..++... .+.+-.+|++.+ ++ .+|+. .+|.+.+=..++........+..+.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 67899999999999988888764444 489999999988 55 47774 7898655432222223367888999999
Q ss_pred HHHHH
Q 024107 242 AAFIK 246 (272)
Q Consensus 242 ~~~i~ 246 (272)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
No 286
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.90 E-value=0.013 Score=45.48 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=62.9
Q ss_pred CCcceEEEEE-Ecc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc-------------------------cchhHHh
Q 024107 30 SPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLT 81 (272)
Q Consensus 30 ~~~~~~v~fy-~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~-------------------------~~~~l~~ 81 (272)
+++.++|.|| ..| +.|....+.+.+++++|.. .+.+..|.++... ....+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3568888898 788 9999999999999999974 3666666554210 0135667
Q ss_pred hcCCC------CCCceEEEEEeCCcceeecC----CCCCChHHHHHHHHHH
Q 024107 82 LFGLE------ESKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRL 122 (272)
Q Consensus 82 ~~~i~------~~~P~i~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 122 (272)
.||+. .. |+. .+++.++...+.+ ....+.+++.+.++..
T Consensus 108 ~~gv~~~~~~~~~-p~~-~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVAL-RGT-FIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCcee-eEE-EEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88876 34 788 7777665555554 2235677788888765
No 287
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.0044 Score=48.47 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=81.0
Q ss_pred CeEEecc-cchhHHhhcC--CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCcccCCCeE
Q 024107 143 NVQIVVG-KTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTL 218 (272)
Q Consensus 143 ~v~~l~~-~~~~~~v~~~--~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~v~~~P~l 218 (272)
.|.++++ +.|...+... .-.++|+.|-+.-..|..+...+.-+|..+. .++|..+-.+.-.. ..|..+.+|++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNTGASDRFSLNVLPTL 215 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccccchhhhcccCCceE
Confidence 4667755 7888888544 3356889999999999999999999999997 69999998877744 58899999999
Q ss_pred EEEeCCCCcCceE-----eeCCCCHHHHHHHHHHH
Q 024107 219 LFYPAGDKANPIK-----VSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 219 ~~~~~~~~~~~~~-----~~g~~~~~~l~~~i~~~ 248 (272)
++|++|+-+..+. +....-..+|..|++++
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999998764221 22245668889999975
No 288
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.87 E-value=0.0057 Score=41.00 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=51.4
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC----CCCcccCCCeEEEEeCCCCcCceEeeCCCCH
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----PKLQVEEYPTLLFYPAGDKANPIKVSARSSS 238 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~----~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~ 238 (272)
+..|..+||++|..++..|.+. ++.|-.+|++.+ +. ...+...+|.+++ ++. ..++.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~------~~~Gf~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL------SWSGFRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE------EEecCCH
Confidence 6788899999999988877542 578888888876 32 1236678899954 331 2346788
Q ss_pred HHHHHHHHHHcC
Q 024107 239 KNIAAFIKEQLK 250 (272)
Q Consensus 239 ~~l~~~i~~~~~ 250 (272)
+.|.+.+..+..
T Consensus 67 ~~l~~~~~~~~~ 78 (81)
T PRK10329 67 DMINRLHPAPHA 78 (81)
T ss_pred HHHHHHHHhhhh
Confidence 999999887754
No 289
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.83 E-value=0.014 Score=40.94 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=64.1
Q ss_pred Cccccccccc-CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEe
Q 024107 20 TDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 97 (272)
Q Consensus 20 ~~~~f~~~~~-~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~ 97 (272)
+.+.++.+++ .....+|.||... .+ ....|.++|..+++...|+.... ..+.+.+++. . |.+ .++.
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~~---~~~~F~~vA~~~R~d~~F~~~~~------~~~~~~~~~~-~-~~i-~l~~ 74 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDSE---HYKAFEEAAEEFHPYIKFFATFD------SKVAKKLGLK-M-NEV-DFYE 74 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCCH---HHHHHHHHHHhhhcCCEEEEECc------HHHHHHcCCC-C-CcE-EEeC
Confidence 4455777887 7778888888776 53 34569999999988788865332 3566777765 4 888 6665
Q ss_pred CCcceeecC-CCCCChHHHHHHHHHH
Q 024107 98 NKAISKFLL-ESDLTPSNIEEFCSRL 122 (272)
Q Consensus 98 ~~~~~~~~~-~g~~~~~~i~~fi~~~ 122 (272)
........| .|..+.+.|.+|+...
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 422233446 7788999999999763
No 290
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.82 E-value=0.0025 Score=49.82 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=37.3
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
+++++|.|+|+||+.|.+ .+.++++.++|++. .+.+..+.|..
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nq 67 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQ 67 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccc
Confidence 689999999999999975 77999999999864 59999998853
No 291
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.81 E-value=0.037 Score=40.15 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=68.4
Q ss_pred cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecC-
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL- 106 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~- 106 (272)
+..+.+++.|=.+| +.|-++...+.++|++.+.-..++.+|.++- +++.+-|.+. . |.-+++|-.++.-...+
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~V---pdfn~~yel~-d-P~tvmFF~rnkhm~vD~G 92 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEV---PDFNQMYELY-D-PCTVMFFFRNKHMMVDFG 92 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTT---HCCHHHTTS--S-SEEEEEEETTEEEEEESS
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccc---hhhhcccccC-C-CeEEEEEecCeEEEEEec
Confidence 45577888899999 9999999999999999999899999999999 9999999999 5 87657774433333332
Q ss_pred -------CCC-CChHHHHHHHHHHhcC
Q 024107 107 -------ESD-LTPSNIEEFCSRLLHG 125 (272)
Q Consensus 107 -------~g~-~~~~~i~~fi~~~~~~ 125 (272)
.+. .+.+++..-+.-+..|
T Consensus 93 tgnnnKin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 93 TGNNNKINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SSSSSSBCS--SCHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEcCcHHHHHHHHHHHHHH
Confidence 222 3567777777666544
No 292
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.81 E-value=0.035 Score=43.44 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=44.8
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCC--------cccchhHHh-hcCCCCCCceE
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIAD--------EDLAKPFLT-LFGLEESKNTV 92 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~--------~~~~~~l~~-~~~i~~~~P~i 92 (272)
.+++++|.|++.| +.|.+ .+.+.++.++|.++ +.+..+.|+. ......+|+ ++|++ + |.+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-F-pv~ 94 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-F-PMF 94 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-c-eeE
Confidence 3578999999999 98875 78999999999853 9999998853 111245665 57753 5 766
No 293
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.79 E-value=0.0021 Score=45.26 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=62.8
Q ss_pred ceEeeCcccccccccCCcceEEEEEEcc---cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCce
Q 024107 15 LVTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 91 (272)
Q Consensus 15 ~v~~l~~~~f~~~~~~~~~~~v~fy~~~---~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~ 91 (272)
-+..++.++++.++..+...+++|..++ +.+..+.=++-++.+.+.+.+..+.+.-..+ ..+..+||+... |+
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e---~~L~~r~gv~~~-Pa 85 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE---RALAARFGVRRW-PA 85 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH---HHHHHHHT-TSS-SE
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH---HHHHHHhCCccC-Ce
Confidence 3567788899998887756555555555 5566677788999999999888888886666 799999999999 99
Q ss_pred EEEEEeCCcc
Q 024107 92 VVTAFDNKAI 101 (272)
Q Consensus 92 i~~~~~~~~~ 101 (272)
+ .++.++..
T Consensus 86 L-vf~R~g~~ 94 (107)
T PF07449_consen 86 L-VFFRDGRY 94 (107)
T ss_dssp E-EEEETTEE
T ss_pred E-EEEECCEE
Confidence 9 89987753
No 294
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.78 E-value=0.0045 Score=47.05 Aligned_cols=97 Identities=7% Similarity=0.015 Sum_probs=65.3
Q ss_pred hHHHHHhhcCCCceEeeC--cccccccccCCcceEEEEEEcc-cchHHHHH-HH--HHHHHHhcCceEEEEEeCCCcccc
Q 024107 3 KILQFLNYNKFPLVTKLT--DINSASVHSSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLA 76 (272)
Q Consensus 3 ~l~~fi~~~s~~~v~~l~--~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~-~~--~~~a~~~~~~i~~~~vd~~~~~~~ 76 (272)
+-+-||+.++...|.... ++-+++.-..+|+++|.++.+| .-|+.+.. .| .++|+.++..+.-+.||.++.
T Consensus 7 ~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~--- 83 (163)
T PF03190_consen 7 SKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER--- 83 (163)
T ss_dssp ---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----
T ss_pred CCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC---
Confidence 345688888887776654 4567777788899999999999 88998876 33 678888887888899999998
Q ss_pred hhHHhhc--------CCCCCCceEEEEEeCCcceee
Q 024107 77 KPFLTLF--------GLEESKNTVVTAFDNKAISKF 104 (272)
Q Consensus 77 ~~l~~~~--------~i~~~~P~i~~~~~~~~~~~~ 104 (272)
+++-..| |..++ |+. .+.++++...+
T Consensus 84 Pdid~~y~~~~~~~~~~gGw-Pl~-vfltPdg~p~~ 117 (163)
T PF03190_consen 84 PDIDKIYMNAVQAMSGSGGW-PLT-VFLTPDGKPFF 117 (163)
T ss_dssp HHHHHHHHHHHHHHHS---S-SEE-EEE-TTS-EEE
T ss_pred ccHHHHHHHHHHHhcCCCCC-Cce-EEECCCCCeee
Confidence 8998888 77788 999 78877654333
No 295
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.015 Score=41.58 Aligned_cols=95 Identities=16% Similarity=0.298 Sum_probs=72.1
Q ss_pred cchhHHhhc-CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEEEEeCCCC
Q 024107 150 KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK 226 (272)
Q Consensus 150 ~~~~~~v~~-~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~~~~~~~~ 226 (272)
...++.+.. ..+.+++-|.-.|-+.|..+-..+..++..+.+ -..++-+|+++- +. ..|++...|++.+|-+++.
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 455666653 467889999999999999999999999999998 688899999977 55 4679999999999877765
Q ss_pred cCceEe--------eCC-CCHHHHHHHHHH
Q 024107 227 ANPIKV--------SAR-SSSKNIAAFIKE 247 (272)
Q Consensus 227 ~~~~~~--------~g~-~~~~~l~~~i~~ 247 (272)
+ .+.+ ++. .+.+.+++.+.-
T Consensus 90 m-kiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 90 M-KIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred E-EEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 5 2222 222 445667666654
No 296
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.72 E-value=0.0022 Score=40.15 Aligned_cols=49 Identities=16% Similarity=0.413 Sum_probs=37.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----CC-cccCCCeEEE
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLF 220 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~----~~-~v~~~P~l~~ 220 (272)
+++|..++|+.|..+...|.+. ++.+-.+|++.. +.. +. +..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999998888544 678888888887 332 22 8889999975
No 297
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.71 E-value=0.0097 Score=39.03 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=44.7
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhh-----cCCCCCCceEEEEEeCCcceeecCCC
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL-----FGLEESKNTVVTAFDNKAISKFLLES 108 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~-----~~i~~~~P~i~~~~~~~~~~~~~~~g 108 (272)
++.|+++| ++|+++.+.+.+++ +.+..+|.+.. +..... +++.+. |++ . ++++. . -.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~---~~~~~~~~~~~~~~~~v-P~i-~-~~~g~--~---l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEED---EGAADRVVSVNNGNMTV-PTV-K-FADGS--F---LT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCC---HhHHHHHHHHhCCCcee-CEE-E-ECCCe--E---ec
Confidence 57899999 99999999987764 34556787766 444444 377788 998 4 44432 1 12
Q ss_pred CCChHHHHHHH
Q 024107 109 DLTPSNIEEFC 119 (272)
Q Consensus 109 ~~~~~~i~~fi 119 (272)
..+...+.+.+
T Consensus 65 ~~~~~~~~~~l 75 (77)
T TIGR02200 65 NPSAAQVKAKL 75 (77)
T ss_pred CCCHHHHHHHh
Confidence 45555665544
No 298
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.69 E-value=0.0047 Score=43.27 Aligned_cols=90 Identities=12% Similarity=0.197 Sum_probs=59.4
Q ss_pred ccchhHHhhcC-CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC----C-CCcccC-CCeEEE
Q 024107 149 GKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----P-KLQVEE-YPTLLF 220 (272)
Q Consensus 149 ~~~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~----~-~~~v~~-~P~l~~ 220 (272)
.+.+++++..+ .++++++=+++.|+........++.......+ .+.++.+|.-.. ++ + +++|.. -|.+++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 35677776543 78899999999999999999999999888876 599999999887 44 2 668875 599999
Q ss_pred EeCCCCcCceEeeCCCCHHHH
Q 024107 221 YPAGDKANPIKVSARSSSKNI 241 (272)
Q Consensus 221 ~~~~~~~~~~~~~g~~~~~~l 241 (272)
+++|+.+- =...+..+.+.|
T Consensus 85 i~~g~~v~-~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNGKVVW-HASHWDITAEAL 104 (105)
T ss_dssp EETTEEEE-EEEGGG-SHHHH
T ss_pred EECCEEEE-ECccccCCHHhc
Confidence 99997541 012344555554
No 299
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.68 E-value=0.021 Score=44.89 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=61.6
Q ss_pred CCcceEEEEE-Ecc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc----------------c------cchhHHhhcC
Q 024107 30 SPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE----------------D------LAKPFLTLFG 84 (272)
Q Consensus 30 ~~~~~~v~fy-~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~----------------~------~~~~l~~~~~ 84 (272)
.+++++|.|| +.| +.|..-.+.+.++.+++.+ .+.+..|.++.. + ....+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4567888999 999 9999999999999999863 355555554321 0 0147888899
Q ss_pred CC------CCCceEEEEEeCCcceeecC----CCCCChHHHHHHHHHH
Q 024107 85 LE------ESKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRL 122 (272)
Q Consensus 85 i~------~~~P~i~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 122 (272)
+. .. |+. .+++.++...+.+ ...++.+++.+.++..
T Consensus 110 v~~~~~g~~~-p~t-fiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLAD-RGT-FVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCcee-eEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 34 877 6777655444433 2235778887777553
No 300
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.67 E-value=0.028 Score=44.01 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=34.3
Q ss_pred CCcce-EEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCC
Q 024107 30 SPIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 71 (272)
Q Consensus 30 ~~~~~-~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~ 71 (272)
.++++ ++.+++.| ++|.+..|.+.++.+++.++ +.+..|+|+
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 34544 45568999 99999999999999999864 888888874
No 301
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.66 E-value=0.0039 Score=48.33 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=59.9
Q ss_pred CCcEEEEEE-CCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC----C--------------------------C
Q 024107 160 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----H--------------------------P 208 (272)
Q Consensus 160 ~~~~lv~f~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~----~--------------------------~ 208 (272)
++.++|+|| +.||+.|....+.+.++..++... ++.+..|..+... . .
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 578999999 899999999999999999999764 4677777654320 0 0
Q ss_pred CCccc------CCCeEEEEeCCCCcCceEeeC----CCCHHHHHHHHHHH
Q 024107 209 KLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQ 248 (272)
Q Consensus 209 ~~~v~------~~P~l~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~~ 248 (272)
.|++. ..|+.+++..++.+. ..+.+ ..+.+.+++.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~-~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIR-HITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 12443 467888887665542 23322 24567888888764
No 302
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.65 E-value=0.0039 Score=49.04 Aligned_cols=86 Identities=10% Similarity=0.168 Sum_probs=57.6
Q ss_pred CCcEEEEEE-CCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--------------CC-------------CCCc
Q 024107 160 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------EH-------------PKLQ 211 (272)
Q Consensus 160 ~~~~lv~f~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--------------~~-------------~~~~ 211 (272)
+++++|+|| +.||+.|....+.+.++..+++.. ++.+..|..+.. .+ ..|+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 678999999 999999999999999999999754 466666665431 01 0234
Q ss_pred cc------CCCeEEEEeCCCCcCceEee-C--CCCHHHHHHHHH
Q 024107 212 VE------EYPTLLFYPAGDKANPIKVS-A--RSSSKNIAAFIK 246 (272)
Q Consensus 212 v~------~~P~l~~~~~~~~~~~~~~~-g--~~~~~~l~~~i~ 246 (272)
+. ..|+.+++..++.+..+.+. . ..+.+.+++.|+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 43 35888888655544222211 1 247788887774
No 303
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.64 E-value=0.0047 Score=47.62 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=36.0
Q ss_pred CCcEEEEEECCC-ChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 160 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 160 ~~~~lv~f~~~~-C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
+++++|.||+.| |+.|....+.+.++++++. ++.+..|..+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~ 86 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL 86 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence 678999999999 9999999999999999984 57777777654
No 304
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.62 E-value=0.0049 Score=46.01 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCcEEEEEECCC-ChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC
Q 024107 160 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203 (272)
Q Consensus 160 ~~~~lv~f~~~~-C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~ 203 (272)
+++++++||+.| |+.|+...+.+.++..++. ++.+..|+.+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 678999999988 6999999999999999985 5778887775
No 305
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.62 E-value=0.015 Score=43.12 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=33.5
Q ss_pred CcceEEEEE-Ecc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc
Q 024107 31 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE 73 (272)
Q Consensus 31 ~~~~~v~fy-~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~ 73 (272)
+++++|.|| +.| +.|....+.+.++..++.+ .+.++.|..+..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~ 68 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV 68 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 578888998 577 8999999999999998874 366766665533
No 306
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.61 E-value=0.017 Score=45.73 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHH
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEK 184 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~ 184 (272)
+.+..++.|+.+.|++|+.+.+.+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 36788999999999999999988876
No 307
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.60 E-value=0.013 Score=53.62 Aligned_cols=110 Identities=11% Similarity=-0.055 Sum_probs=80.3
Q ss_pred hhHHHHHhh--cCCCceEeeCcccccccccCCcce-EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccch
Q 024107 2 DKILQFLNY--NKFPLVTKLTDINSASVHSSPIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAK 77 (272)
Q Consensus 2 ~~l~~fi~~--~s~~~v~~l~~~~f~~~~~~~~~~-~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~ 77 (272)
+|+.+||.. +....-..|+++..+.+-.-.+++ +..|+++. +.|.++...+.++|.... .|.+-.+|...+ +
T Consensus 84 ~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~---~ 159 (517)
T PRK15317 84 HEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALF---Q 159 (517)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhC---H
Confidence 456666654 223334555776666555444455 66788888 999999999999999655 699999999999 9
Q ss_pred hHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 78 PFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 78 ~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
++.++|++.+. |++ .+ ++. .. +.|..+.+.+.+.+...
T Consensus 160 ~~~~~~~v~~V-P~~-~i-~~~--~~--~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 160 DEVEARNIMAV-PTV-FL-NGE--EF--GQGRMTLEEILAKLDTG 197 (517)
T ss_pred hHHHhcCCccc-CEE-EE-CCc--EE--EecCCCHHHHHHHHhcc
Confidence 99999999999 999 44 322 22 36888887777777653
No 308
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=96.59 E-value=0.046 Score=37.99 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=73.5
Q ss_pred ceEeeCcccccccccC--CcceEEEEEEcc-cchHHHHHHHHHHHHHhcC--ceEEEEEeCCCcccchhHH----hhcCC
Q 024107 15 LVTKLTDINSASVHSS--PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFL----TLFGL 85 (272)
Q Consensus 15 ~v~~l~~~~f~~~~~~--~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~--~i~~~~vd~~~~~~~~~l~----~~~~i 85 (272)
.+..|+++++.++-.. ....++.|-... +.-.++.+.++++|+...+ ++.|+-||-+.. +-+. +-|||
T Consensus 2 tlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F---Pllv~yWektF~I 78 (120)
T cd03074 2 TLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF---PLLVPYWEKTFGI 78 (120)
T ss_pred chhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC---chhhHHHHhhcCc
Confidence 3445556554443321 134666777777 8889999999999999885 599999999998 4444 56789
Q ss_pred CCCCceEEEEEeCCc--ceeecCCCC---CChHHHHHHHHHHh
Q 024107 86 EESKNTVVTAFDNKA--ISKFLLESD---LTPSNIEEFCSRLL 123 (272)
Q Consensus 86 ~~~~P~i~~~~~~~~--~~~~~~~g~---~~~~~i~~fi~~~~ 123 (272)
+-++|+| .+.+-.. +.=+.+.+. .+++.+..|+.+.+
T Consensus 79 Dl~~PqI-GVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 79 DLFRPQI-GVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ccCCCce-eeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 8555999 7776432 333444443 78999999999863
No 309
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.59 E-value=0.0049 Score=45.71 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCCcEEEEEE-CCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 159 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 159 ~~~~~lv~f~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
.+++++|+|| +.||..|....+.+.++..+++.. ++.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 4788899999 789999999999999999999543 57888887654
No 310
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.58 E-value=0.0066 Score=40.64 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=39.8
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc--chhHHhhcCCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--AKPFLTLFGLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~--~~~l~~~~~i~~~~P~i 92 (272)
++.|+++| ++|+++.+.+.+++ ..+.+.+..+|.+.... ...+.+..|+.+. |++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v-P~v 58 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV-PNI 58 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC-CeE
Confidence 47899999 99999999999987 33446666666654310 0126677788898 999
No 311
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.56 E-value=0.0085 Score=39.01 Aligned_cols=64 Identities=11% Similarity=0.244 Sum_probs=43.4
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC-CC----CCcccCCCeEEEEeCCCCcCceEeeCCCCH
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP----KLQVEEYPTLLFYPAGDKANPIKVSARSSS 238 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~-~~----~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~ 238 (272)
+++|..+||+.|...+..+.+. ++.+-.+|++.+. .. ..+...+|.+ |-+|.. .| ..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~------ig--g~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGEL------IG--GS 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEE------Ee--CH
Confidence 6789999999999998877753 4667777777663 21 1267789997 445542 22 25
Q ss_pred HHHHHHH
Q 024107 239 KNIAAFI 245 (272)
Q Consensus 239 ~~l~~~i 245 (272)
++|.+|+
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 6666664
No 312
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.56 E-value=0.0084 Score=44.74 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=45.3
Q ss_pred CCcceEEEEEEcc--cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 30 SPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 30 ~~~~~~v~fy~~~--~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
.++++++.||..| ++|....+.+.++++++.+ +.|+.|+.+.......+.+.+++..+ |.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~~~~~-~~l 87 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEGVDNV-TTL 87 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcCCCCc-eEe
Confidence 4568999999988 7899999999999999874 88888888654211345566665455 533
No 313
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.46 E-value=0.0059 Score=39.21 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=36.7
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC----CcccCCCeEEEEeCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVEEYPTLLFYPAGD 225 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~----~~v~~~P~l~~~~~~~ 225 (272)
++.|+++||+.|+.+...+.+. ++.+..+|+..+ +. .. .+..++|+++ .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL--------GIEFEEIDILEDGELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 5678999999999999888876 366677788776 33 22 2556778773 3543
No 314
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.42 E-value=0.02 Score=45.55 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=61.0
Q ss_pred CCcEEE-EEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--------------C----CC-----------C
Q 024107 160 HKDVLL-EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------E----HP-----------K 209 (272)
Q Consensus 160 ~~~~lv-~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--------------~----~~-----------~ 209 (272)
++.+++ +|++.||+.|....+.+.++..+|+.. ++.+..+.++.. . ++ .
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 455554 688999999999999999999999754 467777766531 0 00 1
Q ss_pred Cccc------CCCeEEEEeCCCCcCceE-e--eCCCCHHHHHHHHHHHcC
Q 024107 210 LQVE------EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 210 ~~v~------~~P~l~~~~~~~~~~~~~-~--~g~~~~~~l~~~i~~~~~ 250 (272)
|++. .+|+++++..++.+..+. | .+..+.+.++..|+....
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 2442 479999997666552211 1 345789999999886543
No 315
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.34 E-value=0.013 Score=45.18 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=45.2
Q ss_pred CCcceEEEEEEcc--cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 024107 30 SPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 88 (272)
Q Consensus 30 ~~~~~~v~fy~~~--~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~ 88 (272)
.+++++|.||..| ++|..-.+.+.++++++. .+.++.|.++......++++.+|+..+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~ 102 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENV 102 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCc
Confidence 4568999999999 789999999999999985 588888887753222567777776644
No 316
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.22 E-value=0.0078 Score=40.14 Aligned_cols=54 Identities=11% Similarity=0.337 Sum_probs=36.8
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC--C----C-CCcccCCCeEEEEeCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H----P-KLQVEEYPTLLFYPAGD 225 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~--~----~-~~~v~~~P~l~~~~~~~ 225 (272)
++.|+++||+.|..+...+.++.. .+.+..++...+. . . ..+..++|.+ |-+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 578999999999999988888744 2455566655431 1 1 2367788997 44554
No 317
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.16 E-value=0.091 Score=41.27 Aligned_cols=93 Identities=9% Similarity=-0.036 Sum_probs=63.9
Q ss_pred CCcceEEEEE-Ecc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCccc----------------------chhHHhhcC
Q 024107 30 SPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDL----------------------AKPFLTLFG 84 (272)
Q Consensus 30 ~~~~~~v~fy-~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~----------------------~~~l~~~~~ 84 (272)
.++++++.|| +.| +.|..-.+.+.++++++.+ .+.+..|..+.... ...+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3457888889 899 9999999999999999863 25555555442100 147889999
Q ss_pred CC----CC-CceEEEEEeCCcceeecC----CCCCChHHHHHHHHHHh
Q 024107 85 LE----ES-KNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRLL 123 (272)
Q Consensus 85 i~----~~-~P~i~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~ 123 (272)
+. +. .|+. .+.+.++..++.+ ...++.+++.+.++.+-
T Consensus 110 v~~~~~g~~~r~t-fIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRAT-FVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 83 21 1787 6777665544433 33478999999987764
No 318
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.16 E-value=0.0094 Score=41.62 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=35.3
Q ss_pred EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-C---C-CC----CcccCCCeEEEEeCCC
Q 024107 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E---H-PK----LQVEEYPTLLFYPAGD 225 (272)
Q Consensus 163 ~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~---~-~~----~~v~~~P~l~~~~~~~ 225 (272)
-++.|..+||++|..++..+.+. ++.+..+|++.. + . .. .+..++|.+ |-+|+
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK 70 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence 37778999999999988877655 344455666554 2 1 11 156788997 55664
No 319
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.07 E-value=0.044 Score=38.42 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=59.3
Q ss_pred EEecc-cchhHHhh-cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEe
Q 024107 145 QIVVG-KTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYP 222 (272)
Q Consensus 145 ~~l~~-~~~~~~v~-~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~ 222 (272)
..+++ +.++.++. .....++.+|-... . .....+.++|..++. .+.|+......- ...+++ ..|++++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~-~---~~~~~F~~vA~~~R~--d~~F~~~~~~~~-~~~~~~-~~~~i~l~~ 74 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSED-S---EHYKAFEEAAEEFHP--YIKFFATFDSKV-AKKLGL-KMNEVDFYE 74 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCC-C---HHHHHHHHHHHhhhc--CCEEEEECcHHH-HHHcCC-CCCcEEEeC
Confidence 44533 55778774 33344444443323 2 456689999999987 677755433321 123333 468999997
Q ss_pred CCCCcCceEe-eCCCCHHHHHHHHHHH
Q 024107 223 AGDKANPIKV-SARSSSKNIAAFIKEQ 248 (272)
Q Consensus 223 ~~~~~~~~~~-~g~~~~~~l~~~i~~~ 248 (272)
..... ++.| .|..+.+.|.+||..+
T Consensus 75 ~~~e~-~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEE-PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCC-CcccCCCCCCHHHHHHHHHHh
Confidence 64332 4568 7788999999999865
No 320
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.04 E-value=0.049 Score=49.95 Aligned_cols=110 Identities=11% Similarity=0.002 Sum_probs=80.1
Q ss_pred hhHHHHHhh--cCCCceEeeCcccccccccCCcce-EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccch
Q 024107 2 DKILQFLNY--NKFPLVTKLTDINSASVHSSPIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAK 77 (272)
Q Consensus 2 ~~l~~fi~~--~s~~~v~~l~~~~f~~~~~~~~~~-~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~ 77 (272)
+|+.+||.. +....-..|+++..+.+-.-.+++ +-.|+++. +.|.++...+.+++.... +|..-.+|...+ +
T Consensus 85 ~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~---~ 160 (515)
T TIGR03140 85 HEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALF---Q 160 (515)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhC---H
Confidence 355666654 223234666777766655444454 66788888 999999999999999876 588999999999 9
Q ss_pred hHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 78 PFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 78 ~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
++..+|++.+. |++ .+ ++. .. +.|..+.+.+.+.+...
T Consensus 161 ~~~~~~~v~~V-P~~-~i-~~~--~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 161 DEVEALGIQGV-PAV-FL-NGE--EF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred HHHHhcCCccc-CEE-EE-CCc--EE--EecCCCHHHHHHHHhhc
Confidence 99999999999 999 44 332 22 36788877776666554
No 321
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.03 E-value=0.034 Score=41.55 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=39.5
Q ss_pred CcceEEEEE-Ecc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCC
Q 024107 31 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGL 85 (272)
Q Consensus 31 ~~~~~v~fy-~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i 85 (272)
+++++|.|| +.| +.|....+.+.++.+.+.+ .+.++.|..+.......+++.+++
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 346666665 889 9999999999999999964 488888888765221224455444
No 322
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.01 E-value=0.062 Score=41.82 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=75.5
Q ss_pred HHHHHhhcCCCceEeeCcccccccc---cCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhH
Q 024107 4 ILQFLNYNKFPLVTKLTDINSASVH---SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPF 79 (272)
Q Consensus 4 l~~fi~~~s~~~v~~l~~~~f~~~~---~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l 79 (272)
+..--.......|.+++-..|.+-+ +.+..++|..|.+. +.|.-+...+.++|.+|.. +.|+.+-....
T Consensus 81 ~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c------ 153 (240)
T KOG3170|consen 81 WRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC------ 153 (240)
T ss_pred HHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc------
Confidence 3334455677888899888887744 45566788899999 9999999999999999997 88887766544
Q ss_pred HhhcCCCCCCceEEEEEeCCcce-ee----cCCCC-CChHHHHHHHHH
Q 024107 80 LTLFGLEESKNTVVTAFDNKAIS-KF----LLESD-LTPSNIEEFCSR 121 (272)
Q Consensus 80 ~~~~~i~~~~P~i~~~~~~~~~~-~~----~~~g~-~~~~~i~~fi~~ 121 (272)
...|-=... ||+ .++..|... .+ .+.|. .+.+++..|+.+
T Consensus 154 IpNYPe~nl-PTl-~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 154 IPNYPESNL-PTL-LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred cCCCcccCC-CeE-EEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 111222344 999 666555322 22 23443 578888888877
No 323
>PHA03050 glutaredoxin; Provisional
Probab=96.00 E-value=0.016 Score=41.14 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=35.7
Q ss_pred EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC----C----CC-CCcccCCCeEEEEeCCC
Q 024107 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----E----HP-KLQVEEYPTLLFYPAGD 225 (272)
Q Consensus 163 ~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~----~----~~-~~~v~~~P~l~~~~~~~ 225 (272)
-++.|..+||++|......|.+..-... .+-.+|++.. + +. .-+..++|.+ |-+|+
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~-----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~ 78 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG-----AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKT 78 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC-----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCE
Confidence 3778999999999998888877632221 3444555542 1 11 1266789998 44554
No 324
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.97 E-value=0.014 Score=38.07 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=43.1
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-C---CCcccCCCeEEEEeCCCCcCceEeeCCCCHH
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-P---KLQVEEYPTLLFYPAGDKANPIKVSARSSSK 239 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~---~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~ 239 (272)
.+|..++|+.|+..+..+.+. ++.+-.+|++.+ +. . ..+..++|.+++ +|. ..-++.+.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~-----~~~~G~~~~ 66 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD-----LSWSGFRPD 66 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC-----cEEeccCHH
Confidence 568889999999998888753 577777888776 22 2 336678999754 332 134445666
Q ss_pred HHHH
Q 024107 240 NIAA 243 (272)
Q Consensus 240 ~l~~ 243 (272)
.|.+
T Consensus 67 ~~~~ 70 (72)
T TIGR02194 67 KLKA 70 (72)
T ss_pred HHHh
Confidence 5544
No 325
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.97 E-value=0.014 Score=40.54 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=37.4
Q ss_pred CCcEEEEEEC----CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-C----CcccCCCeEEEEeCCC
Q 024107 160 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K----LQVEEYPTLLFYPAGD 225 (272)
Q Consensus 160 ~~~~lv~f~~----~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~----~~v~~~P~l~~~~~~~ 225 (272)
.++++|+-.+ |||++|..+...+... ++.+..+|+..+ +.. . .+...+|.+ |-+|+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~ 76 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGE 76 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 4566665542 8999999998888775 466777888766 322 1 256688988 44554
No 326
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.95 E-value=0.0086 Score=39.76 Aligned_cols=52 Identities=10% Similarity=0.262 Sum_probs=35.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC----CcccCCCeEEEEeCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVEEYPTLLFYPAGD 225 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~----~~v~~~P~l~~~~~~~ 225 (272)
+++|+.++|+.|...+..+.+. ++.+-.+|++.+ +. .+ .+..++|++ |-+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 3578899999999999888753 455666666665 22 22 266788997 44553
No 327
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.95 E-value=0.013 Score=38.19 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=37.3
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC----CcccCCCeEEEEeCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVEEYPTLLFYPAGD 225 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~----~~v~~~P~l~~~~~~~ 225 (272)
++.|+.++|+.|+.+...+.+. ++.+-.+|+..+ +. .+ .+...+|.+ |-+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 5778899999999998888763 577778888876 32 12 245677988 44554
No 328
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.92 E-value=0.015 Score=39.81 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=37.6
Q ss_pred CCcEEEEEEC----CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-----CCcccCCCeEEEEeCCC
Q 024107 160 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-----KLQVEEYPTLLFYPAGD 225 (272)
Q Consensus 160 ~~~~lv~f~~----~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-----~~~v~~~P~l~~~~~~~ 225 (272)
+++++|+-.+ |||++|......+... ++.+..+|+..+ ++. ..+..++|.+ |-+|.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 4566666543 7999999888877775 466777777666 332 1266788997 44554
No 329
>PRK15000 peroxidase; Provisional
Probab=95.87 E-value=0.075 Score=42.23 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=63.6
Q ss_pred CCcceEEEEEEc-c-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc-------------------------cchhHHh
Q 024107 30 SPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLT 81 (272)
Q Consensus 30 ~~~~~~v~fy~~-~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~-------------------------~~~~l~~ 81 (272)
+++.+++.||.. | +.|..-.+.|.+++++|.. .+.+..|.++... ....+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 466888889985 7 9999999999999999974 2556666555220 0135667
Q ss_pred hcCCC------CCCceEEEEEeCCcceeecC----CCCCChHHHHHHHHHHh
Q 024107 82 LFGLE------ESKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRLL 123 (272)
Q Consensus 82 ~~~i~------~~~P~i~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~ 123 (272)
.||+. +. |+. .+.+.++..++.+ ..+++.+++.+.++.+.
T Consensus 113 ~ygv~~~~~g~~~-r~t-fiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 113 AYGIEHPDEGVAL-RGS-FLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HcCCccCCCCcEE-eEE-EEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 78876 45 888 6777655444433 33478899998887753
No 330
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.84 E-value=0.016 Score=37.86 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=36.5
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC----Cccc-CCCeEEEEeCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVE-EYPTLLFYPAGD 225 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~----~~v~-~~P~l~~~~~~~ 225 (272)
+++|..++|+.|..++..+.+. ++.+-.+|++.+ +. .+ .+.. ++|++ |-+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCE
Confidence 5678899999999998888763 567777788776 32 22 2444 88977 44553
No 331
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.82 E-value=0.022 Score=44.79 Aligned_cols=87 Identities=9% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCcEEEEEE-CCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-C-------------------------C-CCCc
Q 024107 160 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-------------------------H-PKLQ 211 (272)
Q Consensus 160 ~~~~lv~f~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~-------------------------~-~~~~ 211 (272)
+++++++|| +.||+.|....+.+.+...++... ++.+..|..+.. . + ..|+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 568999999 999999999999999999999754 466777765542 1 1 0234
Q ss_pred c----cCC--CeEEEEeCCCCcCceE-e--eCCCCHHHHHHHHHH
Q 024107 212 V----EEY--PTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKE 247 (272)
Q Consensus 212 v----~~~--P~l~~~~~~~~~~~~~-~--~g~~~~~~l~~~i~~ 247 (272)
+ .+. |+.+++..++.+..+. + ....+.+.+++.|+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 4 244 9999997555442221 1 123678999988864
No 332
>PRK10824 glutaredoxin-4; Provisional
Probab=95.81 E-value=0.012 Score=42.23 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=36.3
Q ss_pred CCcEEEEEEC----CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-C----CcccCCCeEEEEeCCCC
Q 024107 160 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K----LQVEEYPTLLFYPAGDK 226 (272)
Q Consensus 160 ~~~~lv~f~~----~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~----~~v~~~P~l~~~~~~~~ 226 (272)
.++++|+--+ |+|++|......|... .+.+..+|...+ ++. . -+...+|.+ |-+|+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~--------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G~~ 80 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC--------GERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGEL 80 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc--------CCCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 4556655443 6999999998888776 244445566655 332 1 166788887 556643
No 333
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.81 E-value=0.13 Score=37.34 Aligned_cols=94 Identities=15% Similarity=0.253 Sum_probs=65.4
Q ss_pred cchhHHhh-cCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeEE-EEeCCC
Q 024107 150 KTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL-FYPAGD 225 (272)
Q Consensus 150 ~~~~~~v~-~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l~-~~~~~~ 225 (272)
-..++.++ +..+.+++-|.-.|-+.|..+-..+.++|.+.++ -..++.+|.++- ++ ..|.+. -|.-+ +|-+++
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 45566665 4478899999999999999999999999999998 689999999977 55 356777 77744 443555
Q ss_pred CcCceEe--------eCC-CCHHHHHHHHHH
Q 024107 226 KANPIKV--------SAR-SSSKNIAAFIKE 247 (272)
Q Consensus 226 ~~~~~~~--------~g~-~~~~~l~~~i~~ 247 (272)
.+ .+.+ .+. .+.++++..+.-
T Consensus 86 hm-~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 86 HM-MVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EE-EEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EE-EEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 44 2222 222 346777766654
No 334
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.80 E-value=0.043 Score=38.60 Aligned_cols=90 Identities=12% Similarity=0.194 Sum_probs=56.6
Q ss_pred cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeCCC----
Q 024107 150 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGD---- 225 (272)
Q Consensus 150 ~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~---- 225 (272)
+..++++.. .+.++|-|+...-. .....+.++|..++. ++.|+......- ...+++ .|++++|++..
T Consensus 9 ~~l~~f~~~-~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~~~~~-~~~~~~--~~~ivl~~p~~~~~k 79 (104)
T cd03069 9 AEFEKFLSD-DDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHTSDKQL-LEKYGY--GEGVVLFRPPRLSNK 79 (104)
T ss_pred HHHHHHhcc-CCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEEChHHH-HHhcCC--CCceEEEechhhhcc
Confidence 456676643 44444444443222 456788999999987 677765544321 235566 67888884311
Q ss_pred -CcCceEeeCCCCHHHHHHHHHHH
Q 024107 226 -KANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 226 -~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
..+.+.|.|..+.+.|.+||..+
T Consensus 80 ~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 80 FEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcccccccCcCCHHHHHHHHHhh
Confidence 12244699998999999999875
No 335
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.78 E-value=0.042 Score=40.37 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=41.7
Q ss_pred ceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhc---CCCCCCceEEEEEeCC
Q 024107 33 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLF---GLEESKNTVVTAFDNK 99 (272)
Q Consensus 33 ~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~---~i~~~~P~i~~~~~~~ 99 (272)
..++.|..+| ++|.+..|.+.++|+... .+.+..+--+++ +++...| |.... |++ .+++.+
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~---~el~~~~lt~g~~~I-P~~-I~~d~~ 107 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDEN---KELMDQYLTNGGRSI-PTF-IFLDKD 107 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHH---HHHTTTTTT-SS--S-SEE-EEE-TT
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCC---hhHHHHHHhCCCeec-CEE-EEEcCC
Confidence 4677899999 999999999999999865 477766666655 5666655 34455 999 788655
No 336
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.64 E-value=0.047 Score=36.77 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=52.8
Q ss_pred eEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHhhcCC--CCCCceEEEEEeCCcceeecCCCC
Q 024107 34 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGL--EESKNTVVTAFDNKAISKFLLESD 109 (272)
Q Consensus 34 ~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~-~~~~l~~~~~i--~~~~P~i~~~~~~~~~~~~~~~g~ 109 (272)
.+++|..+| +.|+++...+++++.++.+ +.+..+|..... ...++.+..|- ... |++ . .++. .. |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~v-P~i-f-i~g~---~i---g- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETV-PQI-F-VDQK---HI---G- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcC-CEE-E-ECCE---EE---c-
Confidence 367888999 9999999999999987754 888888887541 01245555553 567 999 4 3322 22 2
Q ss_pred CChHHHHHHHHHHh
Q 024107 110 LTPSNIEEFCSRLL 123 (272)
Q Consensus 110 ~~~~~i~~fi~~~~ 123 (272)
..++|.++.+..+
T Consensus 71 -g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 -GCTDFEAYVKENL 83 (85)
T ss_pred -CHHHHHHHHHHhc
Confidence 3456777766643
No 337
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.58 E-value=0.072 Score=38.40 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=44.7
Q ss_pred cCCcceEEEEEE-------cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc----chhHHh--hcCCCCCCceEEE
Q 024107 29 SSPIKLQVYVFA-------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL----AKPFLT--LFGLEESKNTVVT 94 (272)
Q Consensus 29 ~~~~~~~v~fy~-------~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~----~~~l~~--~~~i~~~~P~i~~ 94 (272)
.++.+++|+|++ +| ++|....|.+.++-....+...|+.+....... ...+-. .+++++. ||+ +
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~I-PTL-i 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGI-PTL-I 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SS-SEE-E
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeec-ceE-E
Confidence 455788889985 48 999999999999998877778888777643310 013444 6999999 999 5
Q ss_pred EEeCC
Q 024107 95 AFDNK 99 (272)
Q Consensus 95 ~~~~~ 99 (272)
-+.++
T Consensus 95 ~~~~~ 99 (119)
T PF06110_consen 95 RWETG 99 (119)
T ss_dssp ECTSS
T ss_pred EECCC
Confidence 55544
No 338
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.56 E-value=0.18 Score=41.55 Aligned_cols=82 Identities=12% Similarity=0.220 Sum_probs=52.9
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC----------------C------------------
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS----------------A------------------ 204 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~----------------~------------------ 204 (272)
+.+.+++.|..+.|++|+++...+..+.+. + ++.+..+... .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 356789999999999999998887665432 1 2333222210 0
Q ss_pred -C------C----------C-CCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHH
Q 024107 205 -N------E----------H-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK 246 (272)
Q Consensus 205 -~------~----------~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~ 246 (272)
. + + .+++++++|++++-...+. .....|..+.+.|.+.+.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~--~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGT--LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--EEEecCCCCHHHHHHHhC
Confidence 0 0 0 0247899999988864332 225788888898888764
No 339
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.52 E-value=0.017 Score=40.67 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=59.7
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECC--CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcccCCCeE
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTP--WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL 218 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~--~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v~~~P~l 218 (272)
....++..+++.++. .....+++|.+. .|.-+....-++-++.+.+.+ .+..+.+.-... .+ .+|++..+|++
T Consensus 10 g~~~vd~~~ld~~l~-~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 10 GWPRVDADTLDAFLA-APGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp TEEEE-CCCHHHHHH-CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred CCeeechhhHHHHHh-CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeE
Confidence 356788899999874 455555555442 244455555678888888988 788877773333 55 48899999999
Q ss_pred EEEeCCCCcCceEeeCCC
Q 024107 219 LFYPAGDKANPIKVSARS 236 (272)
Q Consensus 219 ~~~~~~~~~~~~~~~g~~ 236 (272)
++|++|.... ...|..
T Consensus 87 vf~R~g~~lG--~i~gi~ 102 (107)
T PF07449_consen 87 VFFRDGRYLG--AIEGIR 102 (107)
T ss_dssp EEEETTEEEE--EEESSS
T ss_pred EEEECCEEEE--EecCee
Confidence 9999997654 344443
No 340
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.44 E-value=0.17 Score=38.13 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=38.6
Q ss_pred CCcceEEEEEEcc--cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcC
Q 024107 30 SPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFG 84 (272)
Q Consensus 30 ~~~~~~v~fy~~~--~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~ 84 (272)
++++++|.||..| +.|....+.+.++++.+.+ .+.|+.|..+......+++++++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 4568899999765 7799999999999999875 37777777654422233344444
No 341
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.39 E-value=0.049 Score=40.80 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=40.8
Q ss_pred cceEEEEE-Ecc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCC
Q 024107 32 IKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGL 85 (272)
Q Consensus 32 ~~~~v~fy-~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i 85 (272)
++++|.|| +.| +.|....+.+.++++++.+ .+.++.|..+.......+.+++++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 57777887 899 9999999999999999974 488888887754222445556553
No 342
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.38 E-value=0.066 Score=37.53 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=54.7
Q ss_pred CcccccccccC--CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceEEEE
Q 024107 20 TDINSASVHSS--PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTA 95 (272)
Q Consensus 20 ~~~~f~~~~~~--~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i~~~ 95 (272)
+.+.+++++.. .++++|+=-+.. +-...+...|++.+....+.+.++.+|.-++-. -..++.+|||.+-+|.+ .+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~-il 84 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV-IL 84 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE-EE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE-EE
Confidence 45567777755 556655555555 666777778888888877779999999975500 02567899999666999 78
Q ss_pred EeCCcceeecCCCCCChHHH
Q 024107 96 FDNKAISKFLLESDLTPSNI 115 (272)
Q Consensus 96 ~~~~~~~~~~~~g~~~~~~i 115 (272)
+.+|+..-..-..+++.++|
T Consensus 85 i~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EETTEEEEEEEGGG-SHHHH
T ss_pred EECCEEEEECccccCCHHhc
Confidence 88775322111334665554
No 343
>PRK15000 peroxidase; Provisional
Probab=95.37 E-value=0.039 Score=43.89 Aligned_cols=87 Identities=9% Similarity=0.156 Sum_probs=61.6
Q ss_pred CCCcEEEEEECC-CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC-----------------C--C----------
Q 024107 159 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----------------H--P---------- 208 (272)
Q Consensus 159 ~~~~~lv~f~~~-~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~-----------------~--~---------- 208 (272)
.+++++++||+. ||..|....+.+.+.+.+|+.. ++.+..+.++... + +
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 467999999994 9999999999999999999765 5777777766320 0 0
Q ss_pred -CCccc------CCCeEEEEeCCCCcCceEeeC----CCCHHHHHHHHHH
Q 024107 209 -KLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKE 247 (272)
Q Consensus 209 -~~~v~------~~P~l~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~ 247 (272)
.|++. ..|..+++...+.+.. .+.| ..+.+.+++.++.
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~-~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRH-QVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHH
Confidence 13444 5799899975554422 2333 3678888888865
No 344
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.37 E-value=0.13 Score=36.37 Aligned_cols=90 Identities=12% Similarity=0.164 Sum_probs=59.1
Q ss_pred CcccccccccCC-cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEe
Q 024107 20 TDINSASVHSSP-IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 97 (272)
Q Consensus 20 ~~~~f~~~~~~~-~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~ 97 (272)
+.+.+++++... ...+|.||.+. .. ....|.++|..+++...|+.... ..+.+++++.. |.+ .++.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~~---~~~~F~~vA~~~Rdd~~F~~t~~------~~~~~~~~~~~--~~v-vl~r 74 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEEDP---AYQLYQDAANSLREDYKFHHTFD------SEIFKSLKVSP--GQL-VVFQ 74 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCCH---HHHHHHHHHHhcccCCEEEEECh------HHHHHhcCCCC--Cce-EEEC
Confidence 444566666665 67888888876 42 44668999999988888866433 35677888764 666 5663
Q ss_pred CCc------ceeecCCCC-CChHH-HHHHHHH
Q 024107 98 NKA------ISKFLLESD-LTPSN-IEEFCSR 121 (272)
Q Consensus 98 ~~~------~~~~~~~g~-~~~~~-i~~fi~~ 121 (272)
+.. .....|.|. .+.+. |..|+++
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 321 122334666 56655 9999874
No 345
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.21 E-value=0.27 Score=40.66 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCcceEEEEE-Ecc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCc----------------cc---------chhHHh
Q 024107 30 SPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE----------------DL---------AKPFLT 81 (272)
Q Consensus 30 ~~~~~~v~fy-~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~----------------~~---------~~~l~~ 81 (272)
+++.+++.|| +.| +.|..-.+.|.++.+++.+. +.+..|.++.. .. ...+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 3456777778 788 99999999999999999742 55555554431 00 247889
Q ss_pred hcCCC-----CCCceEEEEEeCCcceeec----CCCCCChHHHHHHHHHHh
Q 024107 82 LFGLE-----ESKNTVVTAFDNKAISKFL----LESDLTPSNIEEFCSRLL 123 (272)
Q Consensus 82 ~~~i~-----~~~P~i~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~~ 123 (272)
.||+. .. |+. .+.+.++..++. ...+++.+++.+.++.+.
T Consensus 177 ayGv~~~~g~a~-R~t-FIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSH-RAS-VLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCcee-cEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 99985 35 888 777765544433 345678999998888764
No 346
>PRK10638 glutaredoxin 3; Provisional
Probab=95.03 E-value=0.039 Score=37.01 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=34.5
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-C----CcccCCCeEE
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K----LQVEEYPTLL 219 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~----~~v~~~P~l~ 219 (272)
+++|..++|++|..++..+.+. .+.+..+|++.+ +.. . .+...+|+++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5678889999999998887764 466667788766 332 2 2567789873
No 347
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.99 E-value=0.12 Score=33.05 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=42.3
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCCh
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP 112 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~ 112 (272)
++.|+++| ++|.++...+.+. .+.+..+|.+.... ...+.+..+..+. |++ .+ ++ ... ++.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~v-P~i-~~-~~---~~i---~g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSV-PVV-VI-GD---EHL---SGFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCccc-CEE-EE-CC---EEE---ecCCH
Confidence 56788899 9999988887763 26677777765410 0123333366788 999 44 22 222 33566
Q ss_pred HHHHHH
Q 024107 113 SNIEEF 118 (272)
Q Consensus 113 ~~i~~f 118 (272)
+.|.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 666654
No 348
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.11 Score=37.00 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=50.8
Q ss_pred ccCCcceEEEEEE--------cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc----chhHHhhcCC-CCCCceEE
Q 024107 28 HSSPIKLQVYVFA--------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL----AKPFLTLFGL-EESKNTVV 93 (272)
Q Consensus 28 ~~~~~~~~v~fy~--------~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~----~~~l~~~~~i-~~~~P~i~ 93 (272)
+++++.++|+|++ +| +.|-++.|++.++-+....++.|+.++..+... ...+-...++ .+. ||++
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~v-PTLl 100 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAV-PTLL 100 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeec-ceee
Confidence 3556678888984 57 999999999999999888889999999875421 0246666677 677 9995
Q ss_pred EE
Q 024107 94 TA 95 (272)
Q Consensus 94 ~~ 95 (272)
.+
T Consensus 101 rw 102 (128)
T KOG3425|consen 101 RW 102 (128)
T ss_pred EE
Confidence 44
No 349
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.99 E-value=0.074 Score=39.82 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 202 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~ 202 (272)
+.+..++.|+.++|++|+.+.+.+..+...+. ++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeC
Confidence 35678999999999999999999998877664 455555544
No 350
>PRK13190 putative peroxiredoxin; Provisional
Probab=94.88 E-value=0.26 Score=39.22 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=63.0
Q ss_pred CcceEE-EEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc--------------c----------cchhHHhhc
Q 024107 31 PIKLQV-YVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE--------------D----------LAKPFLTLF 83 (272)
Q Consensus 31 ~~~~~v-~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~--------------~----------~~~~l~~~~ 83 (272)
++.+++ .|.+.| +.|..-.+.+.++..++.. .+.+..|.++.. . ....+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 444444 467888 9999999999999999874 255666555421 0 024778888
Q ss_pred CCC------CCCceEEEEEeCCcceeec----CCCCCChHHHHHHHHHHhc
Q 024107 84 GLE------ESKNTVVTAFDNKAISKFL----LESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 84 ~i~------~~~P~i~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~~~ 124 (272)
|+. .. |+. .+++.++..++. ..+.++.+++.+.++.+..
T Consensus 107 gv~~~~~g~~~-p~~-fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 107 NLIDENSGATV-RGV-FIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred CCccccCCcEE-eEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 884 35 888 777766544433 3556899999999988653
No 351
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.81 E-value=0.85 Score=31.88 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=78.3
Q ss_pred eEEecccchhHHhhcC-CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC--C----CCccc-CC
Q 024107 144 VQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P----KLQVE-EY 215 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~-~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~--~----~~~v~-~~ 215 (272)
+++++.+++-+....+ +...++.|-.+--+...++.++++++|+...+++++.|+-||-+...+ + .|+|. .-
T Consensus 3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 4567777777766443 677888898888888999999999999999988899999999998833 2 34444 24
Q ss_pred CeEEEEeCCCCcCceEe--eC---CCCHHHHHHHHHHHc
Q 024107 216 PTLLFYPAGDKANPIKV--SA---RSSSKNIAAFIKEQL 249 (272)
Q Consensus 216 P~l~~~~~~~~~~~~~~--~g---~~~~~~l~~~i~~~~ 249 (272)
|.+-+..-.... .+-+ .+ ..+.+.|..||.+.+
T Consensus 83 PqIGVV~vtdad-SvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 83 PQIGVVNVTDAD-SVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred CceeeEeccccc-ceeEecccccccCcHHHHHHHHHhhC
Confidence 998888655443 3333 22 377899999998764
No 352
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.80 E-value=0.27 Score=39.18 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=58.7
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcc------------------------cchhHHhhcCCC--
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED------------------------LAKPFLTLFGLE-- 86 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~~------------------------~~~~l~~~~~i~-- 86 (272)
++.|.++| +.|....+.|.++++++.+. +.+..|.++... ....+++.||+.
T Consensus 30 lf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~ 109 (203)
T cd03016 30 LFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDP 109 (203)
T ss_pred EEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccc
Confidence 44577888 99999999999999999743 667666655310 014678889876
Q ss_pred --CC---CceEEEEEeCCcceeecC----CCCCChHHHHHHHHHH
Q 024107 87 --ES---KNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRL 122 (272)
Q Consensus 87 --~~---~P~i~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 122 (272)
+. .|+. .+++.++..++.+ ...++.+++.+.+...
T Consensus 110 ~~~~~~~~r~~-fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 110 DAGSTLTVRAV-FIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cCCCCceeeEE-EEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 22 0346 5677665444332 3357888898888775
No 353
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.72 E-value=0.1 Score=38.52 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=36.4
Q ss_pred CCcceEEEEE-Ecc-cchHHHHHHHHHHHHHhc-CceEEEEEeCCCc
Q 024107 30 SPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE 73 (272)
Q Consensus 30 ~~~~~~v~fy-~~~-~~c~~~~~~~~~~a~~~~-~~i~~~~vd~~~~ 73 (272)
.+++++|.|| +.| +.|....+.+.+++.++. ..+.|+.|..+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 5678899998 678 999999999999999985 3488888887654
No 354
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.074 Score=35.46 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=34.4
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC--CC-----CC-cccCCCeEE
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HP-----KL-QVEEYPTLL 219 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~--~~-----~~-~v~~~P~l~ 219 (272)
++.|..++|++|...+..|... .+.+..++.+..+ -. +. +..++|.++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~ 58 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF 58 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE
Confidence 6778899999999988877733 5677777776664 11 22 568899874
No 355
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.60 E-value=0.084 Score=43.65 Aligned_cols=89 Identities=9% Similarity=0.127 Sum_probs=59.4
Q ss_pred CCCcEEEEEE-CCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-----------------CC--C----------
Q 024107 159 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------EH--P---------- 208 (272)
Q Consensus 159 ~~~~~lv~f~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-----------------~~--~---------- 208 (272)
.++.++++|| +.||+.|....+.+.+...+++.. ++.+..|.++.- .+ +
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 3567777777 899999999999999999999764 466666666541 00 0
Q ss_pred -CCccc-----CCCeEEEEeCCCCcCceE-e--eCCCCHHHHHHHHHHH
Q 024107 209 -KLQVE-----EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKEQ 248 (272)
Q Consensus 209 -~~~v~-----~~P~l~~~~~~~~~~~~~-~--~g~~~~~~l~~~i~~~ 248 (272)
.|++. ..|+.+++..++.+.... + ....+.+.++..|...
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 12443 479999997555442221 2 2246788888887643
No 356
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.52 E-value=0.52 Score=38.39 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=54.8
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEE----------------------------------------
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV---------------------------------------- 68 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~v---------------------------------------- 68 (272)
.++..++.|..+. +.|+++.+.+.++.+. + +.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 3456677788888 9999999888876541 1 222211
Q ss_pred eCCC--cccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 69 DIAD--EDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 69 d~~~--~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
.|.. .. ..++++++||+++ |++ . +.++ ... .|..+.+.|.+++...
T Consensus 183 ~c~~~v~~-~~~la~~lgi~gT-Pti-v-~~~G--~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIAD-HYALGVQFGVQGT-PAI-V-LSNG--TLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHH-hHHHHHHcCCccc-cEE-E-EcCC--eEe--eCCCCHHHHHHHHHHc
Confidence 1110 00 3688999999999 999 4 4433 333 6888999999998863
No 357
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.31 E-value=0.08 Score=42.19 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=34.3
Q ss_pred cEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 162 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 162 ~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
.+++.|++.||+.|....+.+.++..+|+.. ++.+..+.++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 3455788999999999999999999999764 47777777664
No 358
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.18 E-value=0.21 Score=37.80 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=36.2
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~ 203 (272)
+.+.+|+.|....|++|..+.+.+..+...+-+.+++.+...+..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 356789999999999999999999999999833337888888773
No 359
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.14 E-value=0.11 Score=38.47 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=35.6
Q ss_pred CCcceEEEEEEcc-cc-hHHHHHHHHHHHHHhcC----ceEEEEEeCC
Q 024107 30 SPIKLQVYVFAKA-DD-LKSLLEPLEDIARNFKG----KIMFTAVDIA 71 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~-c~~~~~~~~~~a~~~~~----~i~~~~vd~~ 71 (272)
.+++++|.|++.| +. |....+.+++++..+.+ ++.+..|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4678999999999 86 99999999999999975 3778777765
No 360
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.14 E-value=0.1 Score=41.93 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCcEE-EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC---C-------------------------C
Q 024107 160 HKDVL-LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH---P-------------------------K 209 (272)
Q Consensus 160 ~~~~l-v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~---~-------------------------~ 209 (272)
++.++ ++|++.||..|....+.+.+++.+|+.. ++.+..+.++.. .. . .
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 45555 4778999999999999999999999754 477777777643 10 0 1
Q ss_pred Ccc-------cCCCeEEEEeCCCCcCceEe-e--CCCCHHHHHHHHHHH
Q 024107 210 LQV-------EEYPTLLFYPAGDKANPIKV-S--ARSSSKNIAAFIKEQ 248 (272)
Q Consensus 210 ~~v-------~~~P~l~~~~~~~~~~~~~~-~--g~~~~~~l~~~i~~~ 248 (272)
|++ ...|..+++..++.+..+.+ . -..+.+.++..|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 232 13588888876665532211 1 236889999888754
No 361
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=93.99 E-value=1.3 Score=30.41 Aligned_cols=74 Identities=9% Similarity=0.190 Sum_probs=51.9
Q ss_pred CCcE-EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeCCCCcCceEeeCCCCH
Q 024107 160 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSS 238 (272)
Q Consensus 160 ~~~~-lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~ 238 (272)
.+++ ++.|..+. ..|..+...++++|..-. ++.+-..+... ..|++.+..+|+.. .++|.|-+.-
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~---------~~P~~~i~~~~~~~-gIrF~GiP~G 83 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE---------RKPSFSINRPGEDT-GIRFAGIPMG 83 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC---------CCCEEEEecCCCcc-cEEEEecCCc
Confidence 4555 55555555 899988888888877653 45554333221 46999999887543 6899999998
Q ss_pred HHHHHHHHH
Q 024107 239 KNIAAFIKE 247 (272)
Q Consensus 239 ~~l~~~i~~ 247 (272)
..+..||..
T Consensus 84 hEf~Slila 92 (94)
T cd02974 84 HEFTSLVLA 92 (94)
T ss_pred hhHHHHHHH
Confidence 888888864
No 362
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.93 E-value=0.13 Score=40.80 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=35.5
Q ss_pred CCcEEEEEEC-CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 160 HKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 160 ~~~~lv~f~~-~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
++.++|+||. .||..|......+.+++.+|... ++.+..|+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~ 80 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDS 80 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCC
Confidence 5688889995 78999988888999999999865 57777777654
No 363
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.12 Score=36.23 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=36.7
Q ss_pred EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--CCCCC-----cccCCCeEEEEeCCC
Q 024107 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-----QVEEYPTLLFYPAGD 225 (272)
Q Consensus 163 ~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--~~~~~-----~v~~~P~l~~~~~~~ 225 (272)
-+|.|..+||.+|..++..|.. +.. ...+..+|-..+ ++.+. +-.++|.+ |-+|+
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk 76 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGK 76 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCE
Confidence 3566889999999998877777 433 566777776655 34321 34478887 44554
No 364
>PRK13599 putative peroxiredoxin; Provisional
Probab=93.86 E-value=0.11 Score=41.79 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=59.8
Q ss_pred CCc-EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC----------------C------------CC-C
Q 024107 160 HKD-VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------E------------HP-K 209 (272)
Q Consensus 160 ~~~-~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~----------------~------------~~-~ 209 (272)
++. +|+.|++.||+.|....+.+.++..+|+.. ++.+..+.++.. . +. .
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 445 467888999999999999999999999754 477777766652 0 00 1
Q ss_pred Ccc-------cCCCeEEEEeCCCCcCceEe-e--CCCCHHHHHHHHHHH
Q 024107 210 LQV-------EEYPTLLFYPAGDKANPIKV-S--ARSSSKNIAAFIKEQ 248 (272)
Q Consensus 210 ~~v-------~~~P~l~~~~~~~~~~~~~~-~--g~~~~~~l~~~i~~~ 248 (272)
|++ ...|+++++..++.+..+.+ . ...+.+.+++.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 243 25799999976655533222 1 235788888888753
No 365
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=93.85 E-value=0.56 Score=32.69 Aligned_cols=87 Identities=20% Similarity=0.297 Sum_probs=61.0
Q ss_pred ceEEEEEEcc--cchHHHHHHHHHHHHHhc------C----ceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCc
Q 024107 33 KLQVYVFAKA--DDLKSLLEPLEDIARNFK------G----KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA 100 (272)
Q Consensus 33 ~~~v~fy~~~--~~c~~~~~~~~~~a~~~~------~----~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~ 100 (272)
|.+|+|-... +..+...+.++.+|++.. + .+-|+.+|.+.- ..+....++.---|.+ .+.+-..
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~t---dsLRDf~nL~d~~P~L-viLDip~ 91 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMT---DSLRDYTNLPEAAPLL-TILDMSA 91 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHH---HHHHHhcCCCccCceE-EEEeccc
Confidence 6777887665 468888888888887654 1 144555665554 4566666777333999 7777666
Q ss_pred ceeecCC-CCCChHHHHHHHHHHh
Q 024107 101 ISKFLLE-SDLTPSNIEEFCSRLL 123 (272)
Q Consensus 101 ~~~~~~~-g~~~~~~i~~fi~~~~ 123 (272)
..+|+.. .+++.+++.+|+.+++
T Consensus 92 r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 92 RAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred cceEeCchHhcCHHHHHHHHHHhh
Confidence 6777763 4699999999999985
No 366
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.75 E-value=0.86 Score=37.62 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=27.8
Q ss_pred hHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHH
Q 024107 78 PFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCS 120 (272)
Q Consensus 78 ~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~ 120 (272)
.+.+.+|++++ |++ .+.++ ++......|....+.|.+.+.
T Consensus 210 ~l~~~lGv~GT-Pai-v~~d~-~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 210 KLMDDLGANAT-PAI-YYMDK-DGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHcCCCCC-CEE-EEECC-CCCEEEecCCCCHHHHHHHhC
Confidence 47788999999 999 55553 333223368888888877653
No 367
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.74 E-value=0.77 Score=36.37 Aligned_cols=90 Identities=9% Similarity=0.101 Sum_probs=59.5
Q ss_pred CcceEEEEEE-cc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc-------------------------cchhHHhh
Q 024107 31 PIKLQVYVFA-KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLTL 82 (272)
Q Consensus 31 ~~~~~v~fy~-~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~-------------------------~~~~l~~~ 82 (272)
++.+++.||. .| +.|....+.+.+++++|.. .+.+..|+++... ....+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 4677778885 56 9999888999999999985 3677776665321 01367888
Q ss_pred cCCC------CCCceEEEEEeCCcceeecC----CCCCChHHHHHHHHHH
Q 024107 83 FGLE------ESKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRL 122 (272)
Q Consensus 83 ~~i~------~~~P~i~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 122 (272)
||+. .+ |+. .+++.++..++.. ...++.+++.+.+...
T Consensus 116 ygv~~~~~g~~~-r~~-fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YGVLEEEQGVAY-RGL-FIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cCCcccCCCceE-EEE-EEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8875 34 777 6777665433322 2346666777666654
No 368
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.61 E-value=0.69 Score=36.53 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=26.5
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
..+++.+||.+. |++ . +.++ ... .|..+.+.|.+++
T Consensus 162 ~~l~~~~gi~gt-Pti-i-~~~G--~~~--~G~~~~~~l~~~L 197 (197)
T cd03020 162 LALGRQLGVNGT-PTI-V-LADG--RVV--PGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHcCCCcc-cEE-E-ECCC--eEe--cCCCCHHHHHhhC
Confidence 578999999999 999 4 5443 333 6777778777663
No 369
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=93.55 E-value=0.32 Score=32.39 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=53.9
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcce-eecCCCCCCh
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS-KFLLESDLTP 112 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~-~~~~~g~~~~ 112 (272)
+++|-.+. .=|..+...+.+++.... +.+..||.++. +.+..+||. .. |.+ .+-...+.. .....+..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d---~~l~~~Y~~-~I-PVl-~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDED---PELFEKYGY-RI-PVL-HIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTT---HHHHHHSCT-ST-SEE-EETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCC---HHHHHHhcC-CC-CEE-EEcCcccccccceeCCCCCH
Confidence 34555556 899999999888766654 88999999988 899999995 56 998 553321111 2223567888
Q ss_pred HHHHHHHH
Q 024107 113 SNIEEFCS 120 (272)
Q Consensus 113 ~~i~~fi~ 120 (272)
+.+.+|+.
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99988874
No 370
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.48 E-value=0.17 Score=39.01 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=35.6
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~ 203 (272)
+.+..++.|+.+.|++|+.+.+.+..+..++.+ ++.+..+...
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCc
Confidence 467889999999999999999999999998865 6766655543
No 371
>PRK13189 peroxiredoxin; Provisional
Probab=92.97 E-value=0.18 Score=40.72 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred CCcE-EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-C---------------------------CC-C
Q 024107 160 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E---------------------------HP-K 209 (272)
Q Consensus 160 ~~~~-lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~---------------------------~~-~ 209 (272)
++.+ |++|++.||..|....+.+.+++.+|+.. ++.+..+.++.. . +. .
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 5544 45677999999999999999999999754 466766666532 0 00 1
Q ss_pred Cccc-------CCCeEEEEeCCCCcCceEe---eCCCCHHHHHHHHHHH
Q 024107 210 LQVE-------EYPTLLFYPAGDKANPIKV---SARSSSKNIAAFIKEQ 248 (272)
Q Consensus 210 ~~v~-------~~P~l~~~~~~~~~~~~~~---~g~~~~~~l~~~i~~~ 248 (272)
|++. .+|+.+++...+.+..+.+ ....+.+.++..|+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 2332 4688888876555522222 1346788888888754
No 372
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=92.89 E-value=0.42 Score=32.25 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=50.7
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHhhcCC--CCCCceEEEEEeCCcceeecCCCCC
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGL--EESKNTVVTAFDNKAISKFLLESDL 110 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~-~~~~l~~~~~i--~~~~P~i~~~~~~~~~~~~~~~g~~ 110 (272)
+++|..+| +.|.++...+.++...+.+ +.+..+|..... ....+....|- .+. |++ .+ ++. .. |
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tV-P~i-fi-~g~---~i---g-- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETV-PQI-FV-DEK---HV---G-- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCc-CeE-EE-CCE---Ee---c--
Confidence 56788888 9999999999998766544 777788876431 01356666664 566 999 43 321 11 2
Q ss_pred ChHHHHHHHHHHh
Q 024107 111 TPSNIEEFCSRLL 123 (272)
Q Consensus 111 ~~~~i~~fi~~~~ 123 (272)
..++|.+++++..
T Consensus 70 G~~dl~~~~~~~~ 82 (86)
T TIGR02183 70 GCTDFEQLVKENF 82 (86)
T ss_pred CHHHHHHHHHhcc
Confidence 2357777777743
No 373
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.68 E-value=1.3 Score=35.64 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=59.6
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc------------------------cchhHHhhcCCC--
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED------------------------LAKPFLTLFGLE-- 86 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~------------------------~~~~l~~~~~i~-- 86 (272)
++.|.++| +.|..-.+.+.+++.+|.. .+.+..|.++... ....+++.||+.
T Consensus 33 L~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~ 112 (215)
T PRK13599 33 LFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHP 112 (215)
T ss_pred EEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCcc
Confidence 55677888 9999999999999999964 2666666665320 014678888873
Q ss_pred -----CCCceEEEEEeCCcceeec----CCCCCChHHHHHHHHHH
Q 024107 87 -----ESKNTVVTAFDNKAISKFL----LESDLTPSNIEEFCSRL 122 (272)
Q Consensus 87 -----~~~P~i~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~ 122 (272)
.. |++ .+.+.++..++. ...+++.+++.+.++..
T Consensus 113 ~~~~~~~-R~t-fIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 113 GKGTNTV-RAV-FIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCCCcee-eEE-EEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 45 888 677765544332 23357888998888765
No 374
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.47 E-value=0.31 Score=32.91 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=30.1
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
+..|+++.|+.|..+.+.+.++.....+ ++.+.......
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~ 39 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPL 39 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEecccc
Confidence 4679999999999999999999865555 56666655433
No 375
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.44 E-value=0.22 Score=44.19 Aligned_cols=49 Identities=8% Similarity=0.214 Sum_probs=35.5
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC-C----C---------CcccCCCeEEE
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-P----K---------LQVEEYPTLLF 220 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~-~----~---------~~v~~~P~l~~ 220 (272)
++.|..+||++|...+..+.+. ++.+-.+|+++..- . + .+..++|++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999888777764 56777788875531 1 1 24567899844
No 376
>PRK13189 peroxiredoxin; Provisional
Probab=92.44 E-value=1 Score=36.35 Aligned_cols=92 Identities=12% Similarity=0.029 Sum_probs=60.0
Q ss_pred CCcceEE-EEEEcc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcc------------------------cchhHHhh
Q 024107 30 SPIKLQV-YVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED------------------------LAKPFLTL 82 (272)
Q Consensus 30 ~~~~~~v-~fy~~~-~~c~~~~~~~~~~a~~~~~~-i~~~~vd~~~~~------------------------~~~~l~~~ 82 (272)
.++.+++ .|.++| +.|..-.+.|.+++.+|... +.+..|.++... ....+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 3444444 455888 99999999999999999742 555555544210 02467888
Q ss_pred cCCC-------CCCceEEEEEeCCcceeec----CCCCCChHHHHHHHHHHh
Q 024107 83 FGLE-------ESKNTVVTAFDNKAISKFL----LESDLTPSNIEEFCSRLL 123 (272)
Q Consensus 83 ~~i~-------~~~P~i~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~~ 123 (272)
||+. .. |+. .+.+.++..++. ...+++.+++.+.++.+.
T Consensus 114 ygv~~~~~~~~~~-r~t-fIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTV-RAV-FIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCce-eEE-EEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8875 23 777 677765543332 245678889988888763
No 377
>PRK13191 putative peroxiredoxin; Provisional
Probab=92.41 E-value=1.3 Score=35.67 Aligned_cols=90 Identities=10% Similarity=0.044 Sum_probs=59.7
Q ss_pred CcceEE-EEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCccc------------------------chhHHhhc
Q 024107 31 PIKLQV-YVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDL------------------------AKPFLTLF 83 (272)
Q Consensus 31 ~~~~~v-~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~------------------------~~~l~~~~ 83 (272)
++.+++ .|.++| +.|..-.+.|.+++.+|.. .+.+..|.++.... ...+++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 444444 556888 9999999999999999964 26666666652210 13566777
Q ss_pred CCC-------CCCceEEEEEeCCcceeec----CCCCCChHHHHHHHHHH
Q 024107 84 GLE-------ESKNTVVTAFDNKAISKFL----LESDLTPSNIEEFCSRL 122 (272)
Q Consensus 84 ~i~-------~~~P~i~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~ 122 (272)
|+- .. |+. .+.+.++..++. ....++.+++.+.++.+
T Consensus 113 gv~~~~~~~~~~-r~t-fIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 113 GMIHAESSTATV-RAV-FIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred CCcccccCCcee-EEE-EEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 763 23 777 677766544443 23357999999998875
No 378
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=92.33 E-value=0.46 Score=31.33 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=37.2
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc--chhHHhhcCCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--AKPFLTLFGLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~--~~~l~~~~~i~~~~P~i 92 (272)
++.|+++| +.|+.+.+.+.++... ..+..++...... ...+.+..|..++ |++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~-P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTV-PNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCC-CeE
Confidence 57888999 9999999999988763 4455555553310 0235566788888 998
No 379
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.21 E-value=0.84 Score=29.45 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=42.0
Q ss_pred EEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHH
Q 024107 36 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSN 114 (272)
Q Consensus 36 v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~ 114 (272)
.+|..++ +.|+++...|.+. .+.|..+|.+......+.....|..+. |++ .+ ++. .. -++.+.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~v-P~v-~~-~g~--~~---~~G~~~~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQV-PVI-VA-DGD--LS---WSGFRPDK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCccc-CEE-EE-CCC--cE---EeccCHHH
Confidence 3556677 9999998888752 378888888866211233334477777 999 44 322 11 24466666
Q ss_pred HHH
Q 024107 115 IEE 117 (272)
Q Consensus 115 i~~ 117 (272)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 654
No 380
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.11 E-value=0.67 Score=28.63 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=36.1
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCc-ccchhHHhhcCCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-DLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~-~~~~~l~~~~~i~~~~P~i 92 (272)
+++|..++ ++|.++...|++. .+.+..+|.+.. .....+.+..|..+. |++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~-P~v 53 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTV-PQV 53 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSS-SEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCcc-CEE
Confidence 45777788 9999998888432 277888888765 222344444588899 999
No 381
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.86 E-value=1.3 Score=29.42 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=49.0
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChH
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPS 113 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~ 113 (272)
+.+|..++ +.|+++...|.+ .+ |.|..+|.+........++..|.... |++ .+ ++ .. -++.+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g~~~v-Pvv-~i-~~---~~---~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQGFRQL-PVV-IA-GD---LS---WSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcCCCCc-CEE-EE-CC---EE---EecCCHH
Confidence 45667788 999998888854 23 88889999876211223344566677 999 44 22 12 2357888
Q ss_pred HHHHHHHHHh
Q 024107 114 NIEEFCSRLL 123 (272)
Q Consensus 114 ~i~~fi~~~~ 123 (272)
.|.+.+.+..
T Consensus 68 ~l~~~~~~~~ 77 (81)
T PRK10329 68 MINRLHPAPH 77 (81)
T ss_pred HHHHHHHhhh
Confidence 8888887754
No 382
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=91.75 E-value=0.64 Score=30.69 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=39.2
Q ss_pred ceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 33 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 33 ~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
..+++|..+| +.|.++...|.+. .+.+..+|.+.......+.+..|.... |++
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~v-P~i 61 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTV-PQV 61 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCc-CeE
Confidence 4577888899 9999999988643 266777787755333456666688888 999
No 383
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=7.9 Score=33.52 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=104.4
Q ss_pred EEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHH
Q 024107 37 YVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNI 115 (272)
Q Consensus 37 ~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i 115 (272)
.-..+. ...+++...++++|..-. ++++-..+. .... |.| .+-+.+.....+|-|-.--.++
T Consensus 24 ~asldds~~s~~~~~ll~eia~~S~-kis~~~~~~--------------~~Rk-pSF-~i~r~g~~~gv~FAglPlGHEf 86 (520)
T COG3634 24 VASLDDSEKSKEIKELLDEIASLSD-KISLEEDSD--------------LVRK-PSF-SINRPGEDQGVRFAGLPLGHEF 86 (520)
T ss_pred EEecCcccccHHHHHHHHHHHhhcc-ceeeeecCc--------------cccC-Cce-eecCCCcccceEEecCcccchH
Confidence 333344 667888889999988764 455543211 1233 888 7777665554555565444455
Q ss_pred HHHHHHHh--cCccccccccCCCCCCCCCCeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCC
Q 024107 116 EEFCSRLL--HGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD 193 (272)
Q Consensus 116 ~~fi~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~ 193 (272)
..++.-.+ +|.. | ++..+-+++.-.-++...+=-|++-.|..|......+..++-.-.
T Consensus 87 tSlVLaLlqv~G~p---------p--------k~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp--- 146 (520)
T COG3634 87 TSLVLALLQVGGHP---------P--------KEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP--- 146 (520)
T ss_pred HHHHHHHHHhcCCC---------C--------chhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCC---
Confidence 55555544 2321 1 122233333322335555667778899999988888877765433
Q ss_pred ceEEEEEeCCCC--CCCCCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHH
Q 024107 194 NLVIAKIDASAN--EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 247 (272)
Q Consensus 194 ~v~~~~id~~~~--~~~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 247 (272)
++.-..||.... +...-+|-++|++ |-+|+.. -.|.++.+.|+.-|..
T Consensus 147 ~I~H~~IdGa~Fq~Evear~IMaVPtv--flnGe~f----g~GRmtleeilaki~~ 196 (520)
T COG3634 147 RIKHTAIDGALFQDEVEARNIMAVPTV--FLNGEEF----GQGRMTLEEILAKIDT 196 (520)
T ss_pred CceeEEecchhhHhHHHhccceecceE--EEcchhh----cccceeHHHHHHHhcC
Confidence 688888888876 4445589999998 4566543 3677888888887764
No 384
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=91.65 E-value=1.3 Score=31.29 Aligned_cols=97 Identities=12% Similarity=0.196 Sum_probs=55.7
Q ss_pred EEecc-cchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeC
Q 024107 145 QIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPA 223 (272)
Q Consensus 145 ~~l~~-~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~ 223 (272)
..+++ +.+++++......++|-|+...-. .....+.++|..++. ++.|+......- ..++++. .|.+++|++
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~~~~~-~~~~~~~-~~~vvl~rp 75 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTFDSEI-FKSLKVS-PGQLVVFQP 75 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEEChHHH-HHhcCCC-CCceEEECc
Confidence 34433 457776644424444444443222 456678999999987 677865544311 1244443 466777733
Q ss_pred CCC-----cCceEeeCC-CCHHH-HHHHHHHH
Q 024107 224 GDK-----ANPIKVSAR-SSSKN-IAAFIKEQ 248 (272)
Q Consensus 224 ~~~-----~~~~~~~g~-~~~~~-l~~~i~~~ 248 (272)
..- -+...|.|. .+.++ |.+||+++
T Consensus 76 ~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 76 EKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 211 124468887 57655 99999864
No 385
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=91.63 E-value=0.56 Score=29.64 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=35.8
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHhhcCCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~-~~~~l~~~~~i~~~~P~i 92 (272)
++.|.++| ++|+++...+.+.. +.+..+|..... ....+.+..|.... |++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~-P~~ 54 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTV-PQI 54 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCc-CEE
Confidence 56788888 99999999888765 667778887652 11234444566677 988
No 386
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=90.40 E-value=0.19 Score=41.97 Aligned_cols=87 Identities=8% Similarity=0.139 Sum_probs=66.3
Q ss_pred CcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCC
Q 024107 31 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD 109 (272)
Q Consensus 31 ~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~ 109 (272)
.-++-..||+.| +..+...|.++-....+.. +....++-. -+.+...+++|+++. |++ .+.+..-... |.|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~--~~lpsv~s~~~~~~~-ps~-~~~n~t~~~~--~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEES--QALPSVFSSYGIHSE-PSN-LMLNQTCPAS--YRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHH--hhcccchhccccccC-Ccc-eeeccccchh--hccc
Confidence 356677899999 8888888998888888873 444443332 223789999999999 999 6666553344 4899
Q ss_pred CChHHHHHHHHHHhc
Q 024107 110 LTPSNIEEFCSRLLH 124 (272)
Q Consensus 110 ~~~~~i~~fi~~~~~ 124 (272)
++..++.+|..++++
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999999875
No 387
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.27 E-value=1.1 Score=30.01 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=43.0
Q ss_pred EEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-----------------------------chhHHhhcCC
Q 024107 36 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-----------------------------AKPFLTLFGL 85 (272)
Q Consensus 36 v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~-----------------------------~~~l~~~~~i 85 (272)
+.|+++. ++|..+.+.+.++.....+++.+......-... ...+...+|+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 5678888 999999999999987777777776665432210 0246788999
Q ss_pred CCCCceEEEEE
Q 024107 86 EESKNTVVTAF 96 (272)
Q Consensus 86 ~~~~P~i~~~~ 96 (272)
.+. |++ .+.
T Consensus 82 ~g~-Pt~-v~~ 90 (98)
T cd02972 82 TGT-PTF-VVN 90 (98)
T ss_pred CCC-CEE-EEC
Confidence 999 999 553
No 388
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.26 E-value=1.1 Score=35.48 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=64.1
Q ss_pred CceEeeCc-ccccccccCC---cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 024107 14 PLVTKLTD-INSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 88 (272)
Q Consensus 14 ~~v~~l~~-~~f~~~~~~~---~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~ 88 (272)
..|.+++. ..|-+.+.+. ..++|+.|-+- +.|..+-..+.=||..+.- +.|..+....- ....+|..+..
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~~----gas~~F~~n~l 212 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSNT----GASDRFSLNVL 212 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeeccc----cchhhhcccCC
Confidence 35667744 4466655433 45688999999 9999999999999999986 89999887765 67889999999
Q ss_pred CceEEEEEeCCc
Q 024107 89 KNTVVTAFDNKA 100 (272)
Q Consensus 89 ~P~i~~~~~~~~ 100 (272)
|++ .|+.++.
T Consensus 213 -P~L-liYkgGe 222 (273)
T KOG3171|consen 213 -PTL-LIYKGGE 222 (273)
T ss_pred -ceE-EEeeCCc
Confidence 999 8888775
No 389
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.98 E-value=2.3 Score=27.35 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=35.9
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i 92 (272)
++.|..++ +.|+++...|.+. .+.+..+|...... ..++.+..|-... |++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~v-P~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVV-PQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCc-CEE
Confidence 45777788 9999998888862 37788888886521 1245555566677 999
No 390
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=88.46 E-value=2.7 Score=34.12 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=48.2
Q ss_pred CCCCeEEecccc---hhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 140 TNANVQIVVGKT---FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 140 ~~~~v~~l~~~~---~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
++.++..+++++ +.++. ..++|.++.|.+-.|++-..-...+++++++|.+ .+.|..|-+.+
T Consensus 80 Pns~vv~l~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d--~adFl~VYI~E 144 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD--VADFLIVYIEE 144 (237)
T ss_pred CCCceEeeCCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh--hhheehhhHhh
Confidence 355788888876 44443 5689999999999999999999999999999987 45565555533
No 391
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=88.32 E-value=0.2 Score=41.81 Aligned_cols=85 Identities=14% Similarity=0.251 Sum_probs=66.5
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--CC-CCCcccCCCeEEEEeCCCCcCceEeeCCC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EH-PKLQVEEYPTLLFYPAGDKANPIKVSARS 236 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--~~-~~~~v~~~P~l~~~~~~~~~~~~~~~g~~ 236 (272)
..++-+.||+.||+..+...+.+.-....+.. +....++-... .. .++++.+.|++.+....- +.+|-|..
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~---~~~~~~~r 149 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC---PASYRGER 149 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeecccc---chhhcccc
Confidence 55788999999999999999999888888873 33333433333 22 378999999999886655 44799999
Q ss_pred CHHHHHHHHHHHcC
Q 024107 237 SSKNIAAFIKEQLK 250 (272)
Q Consensus 237 ~~~~l~~~i~~~~~ 250 (272)
+..+|++|..+.+.
T Consensus 150 ~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 150 DLASLVNFYTEITP 163 (319)
T ss_pred cHHHHHHHHHhhcc
Confidence 99999999999886
No 392
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=87.94 E-value=3.1 Score=32.29 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=20.7
Q ss_pred EEEEcc-cchHHHHHHHHHHHHHhcCceEEEEE
Q 024107 37 YVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV 68 (272)
Q Consensus 37 ~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~v 68 (272)
+|..|. +.|-...|.|+++...+.+++.|-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 566666 77777777777777777776555443
No 393
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=87.57 E-value=4.1 Score=27.50 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=53.2
Q ss_pred eEEEEEEcc-cchHHHHHHHHHHHHH-hcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCC
Q 024107 34 LQVYVFAKA-DDLKSLLEPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLT 111 (272)
Q Consensus 34 ~~v~fy~~~-~~c~~~~~~~~~~a~~-~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~ 111 (272)
.+=+|++.. +...+....+.++.+. +.+...+-.||..+. +.+++.++|-+. ||++...+ ...++. .|+.+
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q---P~lAE~~~IvAT-PtLIK~~P-~P~rri--iGdls 77 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN---PQLAEEDKILAT-PTLSKILP-PPVRKI--IGDLS 77 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC---HhHHhHCCEEEe-cHHhhcCC-CCccee--ecccc
Confidence 344577777 8888888888887765 446688889999999 999999999999 99965543 333444 57654
No 394
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=87.29 E-value=2.8 Score=26.86 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=35.3
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
+++|..++ +.|.++...+.+. .+.+..+|.+.......+....|.... |.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~v-P~i 54 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTV-PQV 54 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCc-CeE
Confidence 56777888 9999998888753 366777777755221334444577788 999
No 395
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.16 E-value=0.88 Score=31.89 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=42.1
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCC--CC----cccCCCeEEEEeCC-CCcCce--EeeCC
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAG-DKANPI--KVSAR 235 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~--~~----~v~~~P~l~~~~~~-~~~~~~--~~~g~ 235 (272)
..|+.++|+.|+.....+.+. ++.+-.+|...+... ++ +-.+.+.--++... ..-... .-...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 578899999999888777664 466667777665221 11 22222222233222 111000 01245
Q ss_pred CCHHHHHHHHHHH
Q 024107 236 SSSKNIAAFIKEQ 248 (272)
Q Consensus 236 ~~~~~l~~~i~~~ 248 (272)
.+.++++++|.++
T Consensus 74 ls~~e~~~~l~~~ 86 (105)
T cd02977 74 LSDEEALELMAEH 86 (105)
T ss_pred CCHHHHHHHHHhC
Confidence 6778888888775
No 396
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=86.97 E-value=1.1 Score=35.85 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=32.1
Q ss_pred CCcEEEEEECCCChhHHHhHHHH---HHHHHHhcCCCceEEEEEeC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDA 202 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~id~ 202 (272)
+++.++.|++-.|++|..+.+.+ ..+.+.+.+ ++.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecc
Confidence 45779999999999999999866 677777766 566665544
No 397
>PRK09301 circadian clock protein KaiB; Provisional
Probab=86.68 E-value=4.7 Score=28.12 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=54.5
Q ss_pred ceEEEEEEcc-cchHHHHHHHHHHHHH-hcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCC
Q 024107 33 KLQVYVFAKA-DDLKSLLEPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 110 (272)
Q Consensus 33 ~~~v~fy~~~-~~c~~~~~~~~~~a~~-~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~ 110 (272)
..+-+|++.. +...+....++++.+. +.+...+-.||..+. +.++..++|-+. ||++...+ ...++. .|+.
T Consensus 7 ~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q---PelAE~~~IvAT-PTLIK~~P-~P~rri--iGDl 79 (103)
T PRK09301 7 YILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN---PQLAEEDKILAT-PTLAKILP-PPVRKI--IGDL 79 (103)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC---HhHHhHCCeEEe-cHHhhcCC-CCccee--eccc
Confidence 4455677777 8888888888888765 446688889999999 999999999999 99965553 333444 6776
Q ss_pred C
Q 024107 111 T 111 (272)
Q Consensus 111 ~ 111 (272)
+
T Consensus 80 s 80 (103)
T PRK09301 80 S 80 (103)
T ss_pred c
Confidence 4
No 398
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=85.83 E-value=9.2 Score=26.27 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=49.8
Q ss_pred cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceeecCCCCC
Q 024107 32 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 110 (272)
Q Consensus 32 ~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~ 110 (272)
.++.+.+|.+. +.|+.+...+.++|.--. +|.+...+. . . .. |++ .+..++.....+|.|-.
T Consensus 19 ~pV~l~~f~~~~~~~~e~~~ll~e~a~lSd-kI~~~~~~~--~----~--------~~-P~~-~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 19 NPVELVASLDDSEKSAELLELLEEIASLSD-KITLEEDND--D----E--------RK-PSF-SINRPGEDTGIRFAGIP 81 (94)
T ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhCC-ceEEEEecC--C----C--------CC-CEE-EEecCCCcccEEEEecC
Confidence 45666666666 999999999999998764 466543221 1 1 35 999 77665533345557877
Q ss_pred ChHHHHHHHHHH
Q 024107 111 TPSNIEEFCSRL 122 (272)
Q Consensus 111 ~~~~i~~fi~~~ 122 (272)
.-.++..|+..+
T Consensus 82 ~GhEf~Slilai 93 (94)
T cd02974 82 MGHEFTSLVLAL 93 (94)
T ss_pred CchhHHHHHHHh
Confidence 778888887654
No 399
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=85.67 E-value=4.2 Score=26.07 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=34.2
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHhhcCCC-CCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLE-ESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~-~~~~l~~~~~i~-~~~P~i 92 (272)
+++|..++ +.|.++...|.+. .+.|..+|.+... ....+.+..|.. .. |++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~v-P~v 55 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTV-PQI 55 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCcc-CEE
Confidence 45677788 9999998888763 3677778887651 112333445666 67 988
No 400
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=85.13 E-value=4.5 Score=26.15 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=39.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC---CCCCCcccCCCeEEEEeCCCCcCceEeeCCCCHHH
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKN 240 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~---~~~~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~ 240 (272)
+..|+.+.|+.|+..+-.+.+. + +.+-.++.+.. ++..-....+|++..=..|... + ......
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----g---i~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~--~----l~eS~~ 67 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----G---IPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQ--Q----LVDSSV 67 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----C---CceEEEECCchhHHHHHHhCCCccCEEEECCCCCcc--E----EEcHHH
Confidence 4567889999999887544443 2 33333333321 1211233467887543211111 1 235688
Q ss_pred HHHHHHHHcC
Q 024107 241 IAAFIKEQLK 250 (272)
Q Consensus 241 l~~~i~~~~~ 250 (272)
+++++.+.+|
T Consensus 68 I~~yL~~~~~ 77 (77)
T cd03040 68 IISTLKTYLG 77 (77)
T ss_pred HHHHHHHHcC
Confidence 8899988765
No 401
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=2.5 Score=29.20 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCCChhHHHhHHHHHHHHHHhcCCCc-eEEEEEeCCCC-CC----CCC-cccCCCeEEEEeCCC
Q 024107 169 TPWCVTCETTSKQIEKLAKHFKGLDN-LVIAKIDASAN-EH----PKL-QVEEYPTLLFYPAGD 225 (272)
Q Consensus 169 ~~~C~~c~~~~~~~~~~a~~~~~~~~-v~~~~id~~~~-~~----~~~-~v~~~P~l~~~~~~~ 225 (272)
.|.|+........+... . +.|+.+|+-.+ ++ ++| ++.++|.++ -+|+
T Consensus 27 ~P~CGFS~~~vqiL~~~--------g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLy--i~GE 80 (105)
T COG0278 27 FPQCGFSAQAVQILSAC--------GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLY--VNGE 80 (105)
T ss_pred CCCCCccHHHHHHHHHc--------CCcceeEEeeccCHHHHhccHhhcCCCCCceee--ECCE
Confidence 36788877766655544 3 78899999888 55 244 677788774 4553
No 402
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=84.53 E-value=3.2 Score=27.06 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=32.7
Q ss_pred EEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHhhcCCCCCCceE
Q 024107 36 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 36 v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~-~~~~l~~~~~i~~~~P~i 92 (272)
++|..++ +.|.++...|.+.. +.+..+|.+... ...++....|.... |++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g~~~v-P~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSGRRTV-PQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhCCCCc-CEE
Confidence 4566788 99999999987642 556666766551 11233444466677 999
No 403
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=84.52 E-value=1.8 Score=32.52 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=26.7
Q ss_pred EEEEECC------CChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTP------WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~------~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
++.|+++ +|+.|..++..|... ++.+-.+|++.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~ 41 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMD 41 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCC
Confidence 4566677 899999888888765 577888888776
No 404
>PHA03075 glutaredoxin-like protein; Provisional
Probab=84.11 E-value=2.5 Score=30.03 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=24.5
Q ss_pred CcEEEEEECCCChhHHHhHHHHHHHHHHh
Q 024107 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHF 189 (272)
Q Consensus 161 ~~~lv~f~~~~C~~c~~~~~~~~~~a~~~ 189 (272)
+.+++.|.-|.|+-|......+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 46899999999999999998887766555
No 405
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=84.04 E-value=1.7 Score=30.54 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=24.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+.+|+.|+|+.|+.....+.+- ++.+-.+|..+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccC
Confidence 3578899999999887666654 466666676665
No 406
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=83.66 E-value=2.3 Score=32.55 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=34.6
Q ss_pred CCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCC
Q 024107 30 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA 71 (272)
Q Consensus 30 ~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~ 71 (272)
..+..++.|+... ++|..+.+.+.++.+++.+++.|..+...
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 4557788888888 99999999999999999877777765554
No 407
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=83.06 E-value=3.9 Score=28.34 Aligned_cols=52 Identities=13% Similarity=-0.033 Sum_probs=34.1
Q ss_pred eEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhH----HhhcCCCCCCceE
Q 024107 34 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPF----LTLFGLEESKNTV 92 (272)
Q Consensus 34 ~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l----~~~~~i~~~~P~i 92 (272)
.++.|..+| +.|.++...|.+.. +.+..+|.+..+.+.++ .+..|-... |++
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tv-P~V 65 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAV-PAV 65 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCc-CeE
Confidence 467888899 99999988887653 45556666644222233 233355677 998
No 408
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=82.96 E-value=3.1 Score=30.84 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=29.0
Q ss_pred cceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeC
Q 024107 32 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI 70 (272)
Q Consensus 32 ~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~ 70 (272)
+..++.|+.++ ++|.++.+.+.++...+. ++.+...+.
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence 45677788888 999999999999887764 466655544
No 409
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=82.67 E-value=2.1 Score=30.36 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=42.9
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCC--CC----cccCCCeEEEEeCCCCc-CceEee---C
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAGDKA-NPIKVS---A 234 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~--~~----~v~~~P~l~~~~~~~~~-~~~~~~---g 234 (272)
..|+.++|+.|+.....+.+- ++.+-.+|...+... ++ +..+.|.--++...+.. ...... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 468899999999888777663 567777777666332 11 33344544444332211 100011 1
Q ss_pred CCCHHHHHHHHHHH
Q 024107 235 RSSSKNIAAFIKEQ 248 (272)
Q Consensus 235 ~~~~~~l~~~i~~~ 248 (272)
..+.+.+++.|.++
T Consensus 74 ~~s~~e~~~~l~~~ 87 (111)
T cd03036 74 SLSEEEALELLSSD 87 (111)
T ss_pred cCCHHHHHHHHHhC
Confidence 24567777777765
No 410
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=81.99 E-value=4.8 Score=30.21 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=33.6
Q ss_pred cceEEEEEEcc-cchHHHHHHHHHHHHHh--cCceEEEEEeCCCc
Q 024107 32 IKLQVYVFAKA-DDLKSLLEPLEDIARNF--KGKIMFTAVDIADE 73 (272)
Q Consensus 32 ~~~~v~fy~~~-~~c~~~~~~~~~~a~~~--~~~i~~~~vd~~~~ 73 (272)
+..++.|++.. ++|.++.+.+.++-+.+ .+++.|...+....
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 34566666666 99999999999999999 78899998888654
No 411
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=81.92 E-value=2.5 Score=31.01 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=24.3
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+.+|+.++|+.|+.....+.+- ++.+-.+|....
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCC
Confidence 5678899999999887666554 455666666544
No 412
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=80.69 E-value=4.1 Score=31.60 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=28.4
Q ss_pred EEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 166 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 166 ~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+|..|.|+.|-.+.|.|.++...+.+ ++.+-.+-...-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~~~~ 39 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPGGLM 39 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE--SS
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEccch
Confidence 68999999999999999999999998 677766655443
No 413
>PHA03050 glutaredoxin; Provisional
Probab=80.04 E-value=4.5 Score=28.60 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=36.5
Q ss_pred eEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc----chhHHhhcCCCCCCceE
Q 024107 34 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL----AKPFLTLFGLEESKNTV 92 (272)
Q Consensus 34 ~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~----~~~l~~~~~i~~~~P~i 92 (272)
.++.|..+| +.|.++...|.+..-... .|..+|.+.... ...+.+.-|-... |++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tV-P~I 73 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTV-PRI 73 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCc-CEE
Confidence 477888999 999999999877754332 355556554211 1245566676677 999
No 414
>PRK12559 transcriptional regulator Spx; Provisional
Probab=79.86 E-value=3.5 Score=30.26 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=23.8
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+.+|+.|+|..|+.....+.+- ++.+-.+|...+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCC
Confidence 5688999999999877665554 455555565544
No 415
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=79.83 E-value=3.1 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=25.6
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
..|+.++|+.|+.....+.+- ++.+-.+|....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCC
Confidence 468899999999988777763 567777777665
No 416
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=78.55 E-value=4.7 Score=28.77 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=25.2
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+.+|+.++|+.|+.....+.+. ++.+-.+|...+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCC
Confidence 4578899999999888777664 466666776655
No 417
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=78.24 E-value=19 Score=24.60 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=42.3
Q ss_pred hhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeCCCCcCceEeeCC
Q 024107 156 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSAR 235 (272)
Q Consensus 156 v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~~g~ 235 (272)
+..+++.++.+|-...-. -...++++|..+++...+-++.-+...+.. ..+-|.+++-+.+. ...+.|.|.
T Consensus 13 id~~kr~iIgYF~~~~~~----eY~~f~kvA~~lr~dC~F~v~~G~~~~~~~----~~~~~~i~frp~~~-~~~~~y~G~ 83 (91)
T cd03070 13 VDRSKRNIIGYFESKDSD----EYDNFRKVANILRDDCSFLVGFGDVTKPER----PPGDNIIYFPPGHN-APDMVYLGS 83 (91)
T ss_pred hCcCCceEEEEEcCCCCh----hHHHHHHHHHHHhhcCeEEEEecccccccc----CCCCCeEEECCCCC-CCceEEccC
Confidence 334566777777665433 345789999999987654444444443211 22235554444433 334689998
Q ss_pred CC
Q 024107 236 SS 237 (272)
Q Consensus 236 ~~ 237 (272)
++
T Consensus 84 ~t 85 (91)
T cd03070 84 LT 85 (91)
T ss_pred CC
Confidence 74
No 418
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=78.13 E-value=11 Score=24.40 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=45.8
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhc-CceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 96 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~-~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~ 96 (272)
+.+|-+.. +...+....++++.+.+. +...+-.||..+. +.++..++|-.. ||++...
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~---P~lAe~~~ivAt-PtLvk~~ 63 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ---PQLAEEDKIVAT-PTLVKVL 63 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC---HhHHhhCCEEEe-chhhhcC
Confidence 34455555 777777777888777764 5689999999999 999999999999 9995443
No 419
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=76.59 E-value=11 Score=24.98 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=33.7
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc--cchhHHhhc-CCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--LAKPFLTLF-GLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~--~~~~l~~~~-~i~~~~P~i 92 (272)
++.|-.++ +.|.+....|.+. .+.|..+|.+... ...+..++- |..+. |+|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tv-P~I 57 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTV-PQI 57 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCc-CEE
Confidence 45566677 9999988888732 2666666666553 223455555 67787 999
No 420
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=76.13 E-value=8.8 Score=29.14 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=41.6
Q ss_pred CCcceEEEEEEcc--cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCceE
Q 024107 30 SPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 30 ~~~~~~v~fy~~~--~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i 92 (272)
.+++++++||=.. +.|..-.-.|++...+|+. ...+.-|-.+...--..+++++|++ + |-+
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f-~LL 92 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-F-PLL 92 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-c-eee
Confidence 3457888888555 9999999999999999885 2445444444222226788888877 5 544
No 421
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=75.94 E-value=10 Score=30.70 Aligned_cols=61 Identities=10% Similarity=0.142 Sum_probs=45.3
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCC--ceEEEEEeCCCC
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD--NLVIAKIDASAN 205 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~--~v~~~~id~~~~ 205 (272)
+...+.+.+... ...+..+||-+...+|..|..-...++.+..+|...+ ++.|..||--..
T Consensus 11 p~W~i~~~~pm~--~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 11 PPWKIGGQDPML--NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred CCceECCchHhh--hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 345566644332 2347788999999999999998889999988885544 799999986543
No 422
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=75.93 E-value=26 Score=25.10 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=54.2
Q ss_pred EEEEEEcc---cchHHHHHHHHHHHHHhcCc-eEEEEE-eCCCccc--------chhHHhhcCCCCCCceEEEEEeCCcc
Q 024107 35 QVYVFAKA---DDLKSLLEPLEDIARNFKGK-IMFTAV-DIADEDL--------AKPFLTLFGLEESKNTVVTAFDNKAI 101 (272)
Q Consensus 35 ~v~fy~~~---~~c~~~~~~~~~~a~~~~~~-i~~~~v-d~~~~~~--------~~~l~~~~~i~~~~P~i~~~~~~~~~ 101 (272)
++..|+|. +..++....+.+....+.+. +.+..+ +-..... ...+.+.|++....-++ .+..-+++
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~-vLiGKDG~ 90 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTV-VLIGKDGG 90 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEE-EEEeCCCc
Confidence 34556655 44566667777766666653 444444 3333310 12789999988542344 44444555
Q ss_pred eeecCCCCCChHHHHHHHHHH
Q 024107 102 SKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 102 ~~~~~~g~~~~~~i~~fi~~~ 122 (272)
.+-.+.+..+.+.|-..|..+
T Consensus 91 vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 91 VKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEecCCCCCHHHHHHHHhCC
Confidence 677778889999999988875
No 423
>PRK10638 glutaredoxin 3; Provisional
Probab=73.58 E-value=14 Score=24.35 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=34.2
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHhhcCCCCCCceE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLEESKNTV 92 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~-~~~~l~~~~~i~~~~P~i 92 (272)
+++|..++ +.|.++...+++. .+.+..+|++... ....+.+..|.... |++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~v-P~i 56 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTV-PQI 56 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCc-CEE
Confidence 44566677 9999998888863 2667777886552 11345555676677 988
No 424
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=73.09 E-value=7.6 Score=28.54 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=24.1
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+..|+.|+|+.|+.....+.+- ++.+-.+|....
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCC
Confidence 4578899999999876555443 466666776655
No 425
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=71.97 E-value=14 Score=23.94 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=37.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC--CC---CC-cccCCCeEEEEeCCCCcCceEeeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HP---KL-QVEEYPTLLFYPAGDKANPIKVSARSS 237 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~--~~---~~-~v~~~P~l~~~~~~~~~~~~~~~g~~~ 237 (272)
+.+++.++|+.|...+-.+.+. ++.+-.+++...+ .+ +. ....+|+++. .+|+.. ...
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~--------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~-------l~e 65 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL--------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQ-------MFE 65 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc--------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeE-------EEc
Confidence 4567788999999777555444 2333334544332 11 22 3356798743 222211 235
Q ss_pred HHHHHHHHHHH
Q 024107 238 SKNIAAFIKEQ 248 (272)
Q Consensus 238 ~~~l~~~i~~~ 248 (272)
...|.+++.+.
T Consensus 66 s~~I~~yL~~~ 76 (77)
T cd03041 66 SADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHHh
Confidence 67788887764
No 426
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=71.32 E-value=14 Score=28.53 Aligned_cols=61 Identities=21% Similarity=0.146 Sum_probs=40.8
Q ss_pred eEEecccchhHHhhcCCCcEEEEEECCCCh-hHHHhHHHHHHHHHHhcCCC-ceEEEEEeCCCC
Q 024107 144 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN 205 (272)
Q Consensus 144 v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~-~c~~~~~~~~~~a~~~~~~~-~v~~~~id~~~~ 205 (272)
+.+-+++.+... .-.+++++|.|.-+.|+ .|..+...+.++.+.+.... ++.+..|.++..
T Consensus 37 L~d~~G~~~~~~-~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 37 LTDQDGKTVTLD-DLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp EEETTSSEEEGG-GGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred EEcCCCCEecHH-HhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 444444444432 12478999999888884 88888778877777775432 688888888765
No 427
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=70.61 E-value=9.1 Score=28.89 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=33.0
Q ss_pred CCcEEEEEE-CCCChhHHHh-HHHHHHHHHHhcCCCce-EEEEEeCCCC
Q 024107 160 HKDVLLEVY-TPWCVTCETT-SKQIEKLAKHFKGLDNL-VIAKIDASAN 205 (272)
Q Consensus 160 ~~~~lv~f~-~~~C~~c~~~-~~~~~~~a~~~~~~~~v-~~~~id~~~~ 205 (272)
+++++++|| ..||+.|... .+.+.+...+|... ++ .+..+..+..
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~ 76 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDP 76 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCH
Confidence 345555555 7899999988 88999999999754 35 4777776654
No 428
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=67.94 E-value=8 Score=27.80 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEEEECCCChhHHHhHHHHHHH
Q 024107 163 VLLEVYTPWCVTCETTSKQIEKL 185 (272)
Q Consensus 163 ~lv~f~~~~C~~c~~~~~~~~~~ 185 (272)
.+..|+.|.|..|+.....+++-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHc
Confidence 46788999999999988777665
No 429
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.89 E-value=5.4 Score=25.97 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=23.2
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
++|++-.|+.|..+...+..+ ++.+-.+++..
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl--------~v~yd~VeIt~ 36 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL--------NVDYDFVEITE 36 (85)
T ss_pred eeeccccCcchHHHHHHHHHc--------CCCceeeehhh
Confidence 679999999998887776665 45555555544
No 430
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=67.81 E-value=6 Score=26.43 Aligned_cols=52 Identities=12% Similarity=0.241 Sum_probs=43.5
Q ss_pred EEEcc-cchHHHHHHHHHHHHHhc-CceEEEEEeCCCcccchhHHhhcCCCCCCceEE
Q 024107 38 VFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 93 (272)
Q Consensus 38 fy~~~-~~c~~~~~~~~~~a~~~~-~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~ 93 (272)
|-+.. +...++...++.+.+.+- +...+-.||..+. +.++..++|-.. ||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~---P~lAe~~~ivAt-PtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ---PELAEEDRIVAT-PTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS---HSHHTTTEEECH-HHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC---HhHHhHCCeeec-ceEe
Confidence 44455 667888888888888744 5799999999999 999999999999 9993
No 431
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=65.95 E-value=26 Score=24.09 Aligned_cols=45 Identities=7% Similarity=0.040 Sum_probs=29.7
Q ss_pred cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceE
Q 024107 41 KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTV 92 (272)
Q Consensus 41 ~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i 92 (272)
+| +.|.++...|.+.. +.|..+|..+... ...+.+..|-... |++
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tv-P~v 71 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTI-PQL 71 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCC-CEE
Confidence 78 99999988887753 5667777765411 1233444555566 998
No 432
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=64.68 E-value=21 Score=26.16 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=36.0
Q ss_pred EEEeCCCCCCCCCcccCCCeEEEEeCCC---------CcCceEeeCCCCHHHHHHHHHHH
Q 024107 198 AKIDASANEHPKLQVEEYPTLLFYPAGD---------KANPIKVSARSSSKNIAAFIKEQ 248 (272)
Q Consensus 198 ~~id~~~~~~~~~~v~~~P~l~~~~~~~---------~~~~~~~~g~~~~~~l~~~i~~~ 248 (272)
+.+.++..-+.+|+|+.+|++++.+++. .....+..|..+.+.-++.+.+.
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 4444555555689999999999998774 00122577889988888888755
No 433
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=64.04 E-value=11 Score=30.02 Aligned_cols=40 Identities=8% Similarity=0.051 Sum_probs=32.5
Q ss_pred CcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeC
Q 024107 31 PIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDI 70 (272)
Q Consensus 31 ~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~ 70 (272)
+++.+|.||+-. ++|..+.+.+ ..+.+.+.+.+.|..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 457799999999 9999999876 788888887777776654
No 434
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=63.97 E-value=10 Score=26.99 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=23.9
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+..|+.|.|..|+.....+.+- ++.+-.+|....
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhcC
Confidence 4578899999999877655543 456666666554
No 435
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=62.52 E-value=12 Score=26.44 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=24.6
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 206 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~ 206 (272)
.+|+.|.|..|++....+++- ++.+-.+|..+..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccCC
Confidence 578899999999887655554 4666667776653
No 436
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=62.51 E-value=29 Score=23.33 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=29.7
Q ss_pred cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHhhcCCCCCCceE
Q 024107 41 KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTV 92 (272)
Q Consensus 41 ~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~-~~~l~~~~~i~~~~P~i 92 (272)
+| +.|.++...|.+.. +.|..+|...... ...+.+..|-... |++
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tv-P~v 67 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTF-PQL 67 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCC-CEE
Confidence 57 99999888887753 5677777654421 1234455566677 999
No 437
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=62.14 E-value=39 Score=21.58 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=41.3
Q ss_pred EEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--CCC-CCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHH
Q 024107 166 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIA 242 (272)
Q Consensus 166 ~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--~~~-~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~ 242 (272)
+++.++|+.|+.+.-. -.+++. .+.+..++.... ++. ......+|++. .+|..+ .+...|+
T Consensus 1 Ly~~~~Sp~~~kv~~~-----l~~~~i-~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l--------~dS~~I~ 64 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLA-----LEEKGI-PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL--------TDSAAII 64 (75)
T ss_dssp EEEETTSHHHHHHHHH-----HHHHTE-EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE--------ESHHHHH
T ss_pred CCCcCCChHHHHHHHH-----HHHcCC-eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE--------eCHHHHH
Confidence 3677899999887733 334432 344455554432 111 12445689986 455422 3668899
Q ss_pred HHHHHHcCc
Q 024107 243 AFIKEQLKE 251 (272)
Q Consensus 243 ~~i~~~~~~ 251 (272)
++|.+..+.
T Consensus 65 ~yL~~~~~~ 73 (75)
T PF13417_consen 65 EYLEERYPG 73 (75)
T ss_dssp HHHHHHSTS
T ss_pred HHHHHHcCC
Confidence 999887653
No 438
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=61.98 E-value=13 Score=26.50 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=25.0
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 206 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~ 206 (272)
.+|+.|.|..|++....+.+- ++.+-.+|..+..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~p 35 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKNP 35 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCCC
Confidence 478899999999887666654 4566667776653
No 439
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=61.30 E-value=22 Score=26.81 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=40.4
Q ss_pred CcceEEEEE-Ecc-cchHHH-HHHHHHHHHHhcCc-e-EEEEEeCCCcccchhHHhhcCCC-CCCceE
Q 024107 31 PIKLQVYVF-AKA-DDLKSL-LEPLEDIARNFKGK-I-MFTAVDIADEDLAKPFLTLFGLE-ESKNTV 92 (272)
Q Consensus 31 ~~~~~v~fy-~~~-~~c~~~-~~~~~~~a~~~~~~-i-~~~~vd~~~~~~~~~l~~~~~i~-~~~P~i 92 (272)
+++++++|| ..| +.|..- .+.|.+...++... + .+..|.++....-.++++++++. .+ |.+
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f-~lL 95 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKI-RFL 95 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcE-EEE
Confidence 345666666 444 999987 99999999998732 4 46666666432225688888873 55 544
No 440
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=61.10 E-value=78 Score=28.19 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=57.4
Q ss_pred CCCcEEEEEECCCChhHHHhH--HHHHH-HHHHhcCCCceEEEEEeCCCCCCC----CCcccCCCeEEEEeCCCCcCceE
Q 024107 159 SHKDVLLEVYTPWCVTCETTS--KQIEK-LAKHFKGLDNLVIAKIDASANEHP----KLQVEEYPTLLFYPAGDKANPIK 231 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~--~~~~~-~a~~~~~~~~v~~~~id~~~~~~~----~~~v~~~P~l~~~~~~~~~~~~~ 231 (272)
.++.++|.|-+........+. ..+.. .+..+-. .+..+.|+......- -|.+..+|+++++...+.. ..+
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtp-Lev 93 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTP-LEV 93 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCce-eEE
Confidence 467788888777777776666 22222 2333333 566677776655332 3577889999999655542 336
Q ss_pred eeCCCCHHHHHHHHHHHc
Q 024107 232 VSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 232 ~~g~~~~~~l~~~i~~~~ 249 (272)
..|..+.++|..-|.+..
T Consensus 94 itg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 94 ITGFVTADELASSIEKVW 111 (506)
T ss_pred eeccccHHHHHHHHHHHH
Confidence 888888999998888754
No 441
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=59.61 E-value=70 Score=23.75 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=52.3
Q ss_pred ceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCC---ceEEEEEeCCcceeecCCC
Q 024107 33 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK---NTVVTAFDNKAISKFLLES 108 (272)
Q Consensus 33 ~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~---P~i~~~~~~~~~~~~~~~g 108 (272)
.-++.+++|. +=|+.+...++ .++ +.+..+..++. ..+-+++||.... =|. +. ..|..+|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~~G-f~Vk~~~~~d~---~alK~~~gIp~e~~SCHT~--VI-----~Gy~vEG 89 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----ANG-FEVKVVETDDF---LALKRRLGIPYEMQSCHTA--VI-----NGYYVEG 89 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----hCC-cEEEEeecCcH---HHHHHhcCCChhhccccEE--EE-----cCEEEec
Confidence 3467788888 99998777765 233 66777777777 6788889998332 333 22 2344588
Q ss_pred CCChHHHHHHHHHH
Q 024107 109 DLTPSNIEEFCSRL 122 (272)
Q Consensus 109 ~~~~~~i~~fi~~~ 122 (272)
..-.+.|..|+.+-
T Consensus 90 HVPa~aI~~ll~~~ 103 (149)
T COG3019 90 HVPAEAIARLLAEK 103 (149)
T ss_pred cCCHHHHHHHHhCC
Confidence 89999999998874
No 442
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=58.75 E-value=46 Score=21.61 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=41.8
Q ss_pred EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEE
Q 024107 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFY 221 (272)
Q Consensus 163 ~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~ 221 (272)
.+..|-+..-.........+..+.+.+.+. .+.+-.||..++ +.+ .+++-++||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~-~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGG-PYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCC-cEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 345555555566666667777777776532 789999999999 664 7799999997643
No 443
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=58.50 E-value=30 Score=26.30 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=31.9
Q ss_pred CCcEEEEEEC-CCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCC
Q 024107 160 HKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 204 (272)
Q Consensus 160 ~~~~lv~f~~-~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~ 204 (272)
+++++++||- .+++.|-.-.-.++....+|+.. +..+.-|..+.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds 74 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDS 74 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence 6689999984 56777877777888888888765 45666665544
No 444
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=58.19 E-value=18 Score=25.71 Aligned_cols=44 Identities=5% Similarity=0.116 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeC
Q 024107 178 TSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPA 223 (272)
Q Consensus 178 ~~~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~ 223 (272)
+.+.+..+.+........ ..+.++..-+.+|+|+.+|++++-++
T Consensus 37 ~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 37 FKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 344444444444332111 55666666667999999999999987
No 445
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=58.17 E-value=1.1e+02 Score=25.40 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=39.3
Q ss_pred EeeCcccccccccCCcceEEEEEEcc-------cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhh----cCC
Q 024107 17 TKLTDINSASVHSSPIKLQVYVFAKA-------DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL----FGL 85 (272)
Q Consensus 17 ~~l~~~~f~~~~~~~~~~~v~fy~~~-------~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~----~~i 85 (272)
..|++.+-+-+-+-..++-|.+|.+. ..-+.+...+++.+..-.++|.+-.+|-... +...++ +||
T Consensus 10 ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~---~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 10 YSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN---PSEAEEKAKEYGI 86 (271)
T ss_pred ccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC---hHHHHHHHHhcCC
Confidence 34455444333334456655555444 2224455555555555556899999999655 455555 888
Q ss_pred CC
Q 024107 86 EE 87 (272)
Q Consensus 86 ~~ 87 (272)
..
T Consensus 87 ~~ 88 (271)
T PF09822_consen 87 QP 88 (271)
T ss_pred Cc
Confidence 87
No 446
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=56.79 E-value=36 Score=26.20 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=31.4
Q ss_pred EEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC
Q 024107 163 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203 (272)
Q Consensus 163 ~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~ 203 (272)
.+.+|+...|+.|....+.+.++...+.+. .+.+.-+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccccc
Confidence 367899999999999999999999999432 4555555543
No 447
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=56.32 E-value=67 Score=26.49 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=29.9
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHHHHHHHHhcC
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG 191 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~ 191 (272)
...+++..++ ...+++.+++..+.||+.|...+=.+-.+-.+|..
T Consensus 45 ~~~kvsn~d~----~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 45 NFFKVSNQDL----APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred ceeeecCccc----CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 3455555432 25689999999999999997766444444445553
No 448
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.39 E-value=18 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.6
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhc
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFK 190 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~ 190 (272)
+.+|+.+.|+.|....+.+.++...+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668899999999999999999999984
No 449
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=54.85 E-value=45 Score=20.03 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=27.7
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC---CC-CCcccCCCeEEE
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---HP-KLQVEEYPTLLF 220 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~---~~-~~~v~~~P~l~~ 220 (272)
.+|+.++|+.|....-.+... +. .+....++..... .. ...-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-----~i-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-----GL-PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-----CC-CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 357788999999777555544 21 2344444433321 11 234556787753
No 450
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=54.74 E-value=28 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCeEEEEeCCCC-cCceEeeCCCCHHHHHHHHHHHc
Q 024107 215 YPTLLFYPAGDK-ANPIKVSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 215 ~P~l~~~~~~~~-~~~~~~~g~~~~~~l~~~i~~~~ 249 (272)
-|+++++...+. ... .-...++.+.+.+|+.+..
T Consensus 42 ~P~L~l~d~~g~~~E~-i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 42 PPELVLLDEDGEEVER-INIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp --EEEEE-SSS--SEE-EE-SSSSHCHHHHHHHHHT
T ss_pred CCEEEEEcCCCCEEEE-EEcccCCHHHHHHHHHHhC
Confidence 499999975544 332 2346789999999999864
No 451
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=54.73 E-value=36 Score=27.16 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=34.1
Q ss_pred CCCcEEEEEECCCCh-hHHHhHHHHHHHHHHhc-CCC-ceEEEEEeCCCC
Q 024107 159 SHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFK-GLD-NLVIAKIDASAN 205 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~-~c~~~~~~~~~~a~~~~-~~~-~v~~~~id~~~~ 205 (272)
.+++++|+|.=+.|+ .|-.+...+..+-+++. ... ++.+..|.++..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPe 115 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPE 115 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCC
Confidence 588999999878887 78888877877777776 322 566666666554
No 452
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=53.22 E-value=91 Score=23.08 Aligned_cols=94 Identities=7% Similarity=0.074 Sum_probs=61.3
Q ss_pred cCCcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCcccc---------------hhHHhhcCCCCCC
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLA---------------KPFLTLFGLEESK 89 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~~~~~~~---------------~~l~~~~~i~~~~ 89 (272)
...|+.+|+..++. ..+..+-... +.+.+-+++++.+..-|....+|+ ....+.++...+
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f- 97 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL- 97 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC-
Confidence 34578899999888 6665443333 556666667788888888776431 234566778888
Q ss_pred ceEEEEEeCCcc--eeecCCCCCChHHHHHHHHHHh
Q 024107 90 NTVVTAFDNKAI--SKFLLESDLTPSNIEEFCSRLL 123 (272)
Q Consensus 90 P~i~~~~~~~~~--~~~~~~g~~~~~~i~~fi~~~~ 123 (272)
|.++.+....+. ..-+..|..+++++.+-+...+
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 999544433321 1223488999998887776643
No 453
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.91 E-value=38 Score=27.39 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=34.8
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHHhcCc
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGT 126 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~ 126 (272)
...++.+||++. |++ .+ + .+|...|..+.+.+..-+.+.++.+
T Consensus 174 ~~~A~e~gI~gV-P~f-v~---d--~~~~V~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 174 EAAAQEMGIRGV-PTF-VF---D--GKYAVSGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHHCCCccC-ceE-EE---c--CcEeecCCCCHHHHHHHHHHHHhcc
Confidence 467899999999 999 45 2 3455589999999999999998754
No 454
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=48.99 E-value=1.1e+02 Score=22.69 Aligned_cols=89 Identities=10% Similarity=0.181 Sum_probs=56.5
Q ss_pred CCCcEEEEEECCCCh----hHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC--------------------CCCCcccC
Q 024107 159 SHKDVLLEVYTPWCV----TCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------------------HPKLQVEE 214 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~----~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~--------------------~~~~~v~~ 214 (272)
..|..+|+.++|... .|+...- =..+..-+++ ++.+..-|+...+ ...++...
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 478899999988653 4554420 0233333444 6777777776653 11346889
Q ss_pred CCeEEEEeCC-CCcCce-EeeCCCCHHHHHHHHHHHcC
Q 024107 215 YPTLLFYPAG-DKANPI-KVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 215 ~P~l~~~~~~-~~~~~~-~~~g~~~~~~l~~~i~~~~~ 250 (272)
+|.+.+.-.. +....+ +..|..+.+.|++-+.+.++
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 9998888433 222111 57899999999998887653
No 455
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=48.87 E-value=24 Score=28.77 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=45.8
Q ss_pred ceEeeCccc---ccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCc
Q 024107 15 LVTKLTDIN---SASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE 73 (272)
Q Consensus 15 ~v~~l~~~~---f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~ 73 (272)
.|..++..+ +-++...++|.++.|=+-. ++...-.+.|++++++|.+...|..|...+-
T Consensus 83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EA 145 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEA 145 (237)
T ss_pred ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhh
Confidence 455566655 3345677889999998888 9999999999999999998767777666544
No 456
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.60 E-value=34 Score=27.69 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=32.2
Q ss_pred CCcccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCcCCC
Q 024107 209 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ 254 (272)
Q Consensus 209 ~~~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 254 (272)
+++|+++|++++ +++ ....|..+.+-+..-|.+.++....
T Consensus 179 e~gI~gVP~fv~--d~~----~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 179 EMGIRGVPTFVF--DGK----YAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HCCCccCceEEE--cCc----EeecCCCCHHHHHHHHHHHHhcccc
Confidence 569999999999 332 2578999999999999998875543
No 457
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=48.26 E-value=23 Score=22.29 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=27.7
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--CCCCC-cccCCCeEE
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-QVEEYPTLL 219 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--~~~~~-~v~~~P~l~ 219 (272)
.+|+.++|+.|...+-.+.+. +. .+.+..+|.... +..+. ....+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl-~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GI-TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CC-CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 467789999998776444433 32 345555555322 12122 345678884
No 458
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=47.63 E-value=50 Score=29.45 Aligned_cols=53 Identities=9% Similarity=-0.040 Sum_probs=35.8
Q ss_pred EEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhh---------cCCCCCCceEEEE
Q 024107 35 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL---------FGLEESKNTVVTA 95 (272)
Q Consensus 35 ~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~---------~~i~~~~P~i~~~ 95 (272)
++.|..+| ++|.++...+.+. + |.|..+|.++.....++.++ .|..+. |++ .+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g-i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tv-P~i-fi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D-IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTV-PQI-FV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CCeEEEECCCChhHHHHHHHHhhccccccCCCCcc-CeE-EE
Confidence 56788888 9999988887774 3 77888888755211133333 355677 999 44
No 459
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=46.93 E-value=68 Score=24.57 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=41.3
Q ss_pred eCcccccccccCCcceEEEEEEcc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCC
Q 024107 19 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIAD 72 (272)
Q Consensus 19 l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~-~i~~~~vd~~~ 72 (272)
+.+.+|.-.-..+....+.++++. +-|.-+.-.++.+|+.|.+ .|.+-.++|.+
T Consensus 115 ~~~P~f~~~~~~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~~ 170 (171)
T PF07700_consen 115 AKPPSFRCEEEDDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECMH 170 (171)
T ss_dssp SS--EEEEEEEETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred CcCCeEEEEECCCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecccC
Confidence 344455444444556777888888 9999999999999999998 89999988875
No 460
>PRK10026 arsenate reductase; Provisional
Probab=46.67 E-value=28 Score=25.92 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=18.0
Q ss_pred EEEEECCCChhHHHhHHHHHHH
Q 024107 164 LLEVYTPWCVTCETTSKQIEKL 185 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~ 185 (272)
+.+|+.|.|..|++....+.+-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5678899999999988777654
No 461
>PRK10853 putative reductase; Provisional
Probab=46.31 E-value=26 Score=25.13 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=24.4
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+..|+.|.|..|++....+.+- ++.+-.+|.-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ--------GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc--------CCCcEEeehccC
Confidence 4578899999999887766653 456666666554
No 462
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.88 E-value=1.1e+02 Score=29.16 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=59.5
Q ss_pred CeEEecccchhHHhhcCCCcEEEEEECCCChhHHHhHHHH---HHHHHHhcCCCceEEEEEeCCCC-CCCCC--------
Q 024107 143 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN-EHPKL-------- 210 (272)
Q Consensus 143 ~v~~l~~~~~~~~v~~~~~~~lv~f~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~id~~~~-~~~~~-------- 210 (272)
....-..+.|.+. ...++|+++.....||.=|.-|...= .++|..++. ++.-++||-++- ++..+
T Consensus 27 ~W~pW~~eAf~~A-~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~ 103 (667)
T COG1331 27 DWYPWGEEAFAKA-KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAI 103 (667)
T ss_pred cccccCHHHHHHH-HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHh
Confidence 3455677778875 46799999999999999999887553 578888887 788899999887 66422
Q ss_pred -cccCCCeEEEEeCCC
Q 024107 211 -QVEEYPTLLFYPAGD 225 (272)
Q Consensus 211 -~v~~~P~l~~~~~~~ 225 (272)
+--+.|.-++..++.
T Consensus 104 tG~GGWPLtVfLTPd~ 119 (667)
T COG1331 104 TGQGGWPLTVFLTPDG 119 (667)
T ss_pred ccCCCCceeEEECCCC
Confidence 334789877774443
No 463
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=43.33 E-value=38 Score=24.66 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=23.5
Q ss_pred EEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 164 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 164 lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
+.+|+.|.|..|++....+.+- ++.+-.+|.-+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~--------gi~~~~~d~~~~ 36 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS--------GHDVEVQDILKE 36 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCcEEEeccCC
Confidence 5678889999999988776654 345555555443
No 464
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=43.27 E-value=1.5e+02 Score=23.58 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred CCcceEEEEEEcc--cchHHHHHHHHHHHHHhc----Cc--eEEEEEeCCCcccchhHHhhcCC-CCCCceE
Q 024107 30 SPIKLQVYVFAKA--DDLKSLLEPLEDIARNFK----GK--IMFTAVDIADEDLAKPFLTLFGL-EESKNTV 92 (272)
Q Consensus 30 ~~~~~~v~fy~~~--~~c~~~~~~~~~~a~~~~----~~--i~~~~vd~~~~~~~~~l~~~~~i-~~~~P~i 92 (272)
.+++++|.|.-.. .-|-.....+.++-+++. .+ +.|+.+|-+..+ +++.++|+. .-. |.+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt--p~~lk~Y~~~~~~-~~~ 134 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT--PEVLKKYAELNFD-PRW 134 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC--HHHHHHHhcccCC-CCe
Confidence 6678888877555 788777777777776666 23 555666665443 899999998 444 766
No 465
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=42.72 E-value=55 Score=24.28 Aligned_cols=73 Identities=14% Similarity=0.274 Sum_probs=46.3
Q ss_pred cEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCccc----CCCeEEEEeCCCCcCceEeeCC
Q 024107 162 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVE----EYPTLLFYPAGDKANPIKVSAR 235 (272)
Q Consensus 162 ~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~----~~P~l~~~~~~~~~~~~~~~g~ 235 (272)
.-++.+++|.|+=|..-...++. + .+.+-.+..+.. .+. +++|. +-=|.+ -+|. -.+|-
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~---Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy-----~vEGH 90 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----N---GFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGY-----YVEGH 90 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----C---CcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCE-----EEecc
Confidence 44788999999999855444432 2 477777776666 343 56553 222222 2332 35778
Q ss_pred CCHHHHHHHHHHHc
Q 024107 236 SSSKNIAAFIKEQL 249 (272)
Q Consensus 236 ~~~~~l~~~i~~~~ 249 (272)
...+++..++++.-
T Consensus 91 VPa~aI~~ll~~~p 104 (149)
T COG3019 91 VPAEAIARLLAEKP 104 (149)
T ss_pred CCHHHHHHHHhCCC
Confidence 88999999998653
No 466
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=40.99 E-value=51 Score=23.06 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=21.4
Q ss_pred EECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCCC
Q 024107 167 VYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH 207 (272)
Q Consensus 167 f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~~ 207 (272)
|+.|.|..|+.....+.+- ++.+-.+|..+..+
T Consensus 1 Y~~~~C~t~rka~~~L~~~--------gi~~~~~d~~k~p~ 33 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN--------GIEYEFIDYKKEPL 33 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT--------T--EEEEETTTS--
T ss_pred CcCCCCHHHHHHHHHHHHc--------CCCeEeehhhhCCC
Confidence 5789999999988777753 57777888877643
No 467
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.53 E-value=69 Score=25.35 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=29.6
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCcceeecC-CC--CCChHHHHHHHHHHh
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKAISKFLL-ES--DLTPSNIEEFCSRLL 123 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~-~g--~~~~~~i~~fi~~~~ 123 (272)
..+|++.|+.++ ||+ .+-.++. .+.. .| -.+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~Gf-PTl-~le~ng~--~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGF-PTL-ALERNGT--MYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCC-Cee-eeeeCCc--eEeccCCcccCCcHHHHHHHHHHH
Confidence 579999999999 999 7766654 3332 33 246677777766643
No 468
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=40.26 E-value=47 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=26.9
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
......+||.+. |++ .+ +++ +.+.|....+.|.+.+
T Consensus 157 ~~~a~~~gv~Gv-P~~-vv--~g~---~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGV-PTF-VV--NGK---YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSS-SEE-EE--TTT---EEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCccc-CEE-EE--CCE---EEEECCCCHHHHHHHh
Confidence 467789999999 999 55 332 5557888888887765
No 469
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=39.65 E-value=31 Score=21.56 Aligned_cols=21 Identities=5% Similarity=-0.154 Sum_probs=15.6
Q ss_pred EEEECCCChhHHHhHHHHHHH
Q 024107 165 LEVYTPWCVTCETTSKQIEKL 185 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~ 185 (272)
.+|+.++|+.|+.++-.+...
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 467789999999887555544
No 470
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=38.79 E-value=2.8e+02 Score=24.88 Aligned_cols=93 Identities=6% Similarity=0.056 Sum_probs=58.1
Q ss_pred cCCcceEEEEEEcc-cchHHHH-HHHHHH--HHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeCCcceee
Q 024107 29 SSPIKLQVYVFAKA-DDLKSLL-EPLEDI--ARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKF 104 (272)
Q Consensus 29 ~~~~~~~v~fy~~~-~~c~~~~-~~~~~~--a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~~~~~~~ 104 (272)
..++.++|.|.+.. .+.+++. -.|.+. +..+-..++-+.|+...... ..|..-|-+... |.+ .+....+..-.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa-~qFs~IYp~v~v-Ps~-ffIg~sGtpLe 92 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAA-TQFSAIYPYVSV-PSI-FFIGFSGTPLE 92 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhh-hhhhhhcccccc-cce-eeecCCCceeE
Confidence 45567888888888 7777766 233332 23333446666777765433 577777777787 999 44443333334
Q ss_pred cCCCCCChHHHHHHHHHHhc
Q 024107 105 LLESDLTPSNIEEFCSRLLH 124 (272)
Q Consensus 105 ~~~g~~~~~~i~~fi~~~~~ 124 (272)
...|-.++++|..-|.+..-
T Consensus 93 vitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 93 VITGFVTADELASSIEKVWL 112 (506)
T ss_pred EeeccccHHHHHHHHHHHHH
Confidence 44777888888877776543
No 471
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=38.11 E-value=65 Score=23.63 Aligned_cols=43 Identities=5% Similarity=0.064 Sum_probs=29.9
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCc----------ceeecCCCCCChHHHHHHHHH
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKA----------ISKFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~----------~~~~~~~g~~~~~~i~~fi~~ 121 (272)
|.+.++|+|+.. |++ .+..++. .......|+.+.+.-.+.+.+
T Consensus 61 P~lF~~f~I~~V-Pa~-V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 61 PQWFKQFDITAV-PAF-VVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred hHHHhhcCceEc-CEE-EEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 789999999999 999 5665442 012223678877776666664
No 472
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.14 E-value=1.1e+02 Score=24.83 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=27.7
Q ss_pred CcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC
Q 024107 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203 (272)
Q Consensus 161 ~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~ 203 (272)
...++.|....|++|+...+.+.+........ ++.+..+...
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~-~~~~~~~~f~ 126 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV-RLVLREFPFL 126 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCC-ceEEEEeecC
Confidence 67799999999999988877777744444332 3444444333
No 473
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=36.09 E-value=1.1e+02 Score=22.95 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=32.7
Q ss_pred EEEEEEc------c-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHhhcCC----CCCCceE
Q 024107 35 QVYVFAK------A-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGL----EESKNTV 92 (272)
Q Consensus 35 ~v~fy~~------~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~-~~~~l~~~~~i----~~~~P~i 92 (272)
+|+|.++ + ++|+++...|+.. .|.|..+|.+... ...++.+.++- ... |.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tv-PqV 64 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSL-PRV 64 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCC-CEE
Confidence 3455555 6 9999998888765 2677778886541 11345555554 355 888
No 474
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=35.87 E-value=44 Score=20.87 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=35.4
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC--CCCCC-cccCCCeEEEEeCCCCcCceEeeCCCCHHHH
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-QVEEYPTLLFYPAGDKANPIKVSARSSSKNI 241 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~--~~~~~-~v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l 241 (272)
..|+.++|+.|+...-.+... +. .+....+|.... +..+. ....+|++. .+|.. ......+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~-----gi-~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~--------l~es~aI 65 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK-----GV-SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV--------LYESRII 65 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc-----CC-ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE--------EEcHHHH
Confidence 467889999999887555443 22 233334443322 12122 334678663 23211 1345677
Q ss_pred HHHHHH
Q 024107 242 AAFIKE 247 (272)
Q Consensus 242 ~~~i~~ 247 (272)
.+++.+
T Consensus 66 ~~yL~~ 71 (73)
T cd03059 66 MEYLDE 71 (73)
T ss_pred HHHHHh
Confidence 777765
No 475
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=35.76 E-value=66 Score=26.07 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=28.6
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHHH
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 122 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 122 (272)
..+.+.+|+.++ ||+ .+ +++ .+.|..+.+.+.+.+...
T Consensus 205 ~~~a~~~gv~gT-Pt~-~v-~~~-----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGT-PTF-IV-NGK-----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcC-CeE-EE-CCe-----eecCCCCHHHHHHHHHHh
Confidence 467789999999 999 44 433 347888888888888764
No 476
>COG3411 Ferredoxin [Energy production and conversion]
Probab=34.93 E-value=93 Score=19.64 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcCcC
Q 024107 215 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 252 (272)
Q Consensus 215 ~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 252 (272)
=|.+++|++| ...+..+.++..+++++++..-
T Consensus 17 gPvl~vYpeg------vWY~~V~p~~a~rIv~~hl~~G 48 (64)
T COG3411 17 GPVLVVYPEG------VWYTRVDPEDARRIVQSHLLGG 48 (64)
T ss_pred CCEEEEecCC------eeEeccCHHHHHHHHHHHHhCC
Confidence 4999999998 2344568899999999998643
No 477
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=33.17 E-value=1.2e+02 Score=26.16 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=51.6
Q ss_pred CChhHHHhH----HHHHHHHHHhcCCC-ceEEEEEeCCCC---CC--CCCcccC--CCeEEEEeCCCCcCceEeeCCCCH
Q 024107 171 WCVTCETTS----KQIEKLAKHFKGLD-NLVIAKIDASAN---EH--PKLQVEE--YPTLLFYPAGDKANPIKVSARSSS 238 (272)
Q Consensus 171 ~C~~c~~~~----~~~~~~a~~~~~~~-~v~~~~id~~~~---~~--~~~~v~~--~P~l~~~~~~~~~~~~~~~g~~~~ 238 (272)
.|+.|-... ..+.++-+.+.+.. .+.++-+-|--| +- +.+++.. -|...+|..|+.++ +..+..-.
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~--~~~~~~~~ 340 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIK--KLPEEDIV 340 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEE--ecChhhHH
Confidence 477774433 33444445555443 488888888776 22 3556553 69999999998765 56666667
Q ss_pred HHHHHHHHHHcCc
Q 024107 239 KNIAAFIKEQLKE 251 (272)
Q Consensus 239 ~~l~~~i~~~~~~ 251 (272)
+.|...+.++...
T Consensus 341 eel~~~i~~~~~~ 353 (361)
T COG0821 341 EELEALIEAYAEE 353 (361)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777653
No 478
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=31.28 E-value=1.2e+02 Score=21.68 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=27.1
Q ss_pred ccCCCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 212 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 212 v~~~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
...+|.+++|++.+.+| -+.--.+...|.+-+.+.++
T Consensus 80 wp~~PiL~YFkE~qsiH--FlPiiFd~~~L~~~l~~r~~ 116 (116)
T PF11317_consen 80 WPGFPILFYFKETQSIH--FLPIIFDPKQLREQLEERCG 116 (116)
T ss_pred cCCCCEEEEEecCCcce--eeeeecCHHHHHHHHHHhCc
Confidence 45899999999998775 23334677778877777664
No 479
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=31.18 E-value=45 Score=20.85 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=14.3
Q ss_pred EEECCCChhHHHhHHHHHHH
Q 024107 166 EVYTPWCVTCETTSKQIEKL 185 (272)
Q Consensus 166 ~f~~~~C~~c~~~~~~~~~~ 185 (272)
.++.++|++|...+-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 56778999999877544443
No 480
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=2e+02 Score=27.40 Aligned_cols=94 Identities=9% Similarity=-0.019 Sum_probs=67.7
Q ss_pred HHHHhhcCCCceEe--eCcccccccccCCcceEEEEEEcc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCcccchh
Q 024107 5 LQFLNYNKFPLVTK--LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKP 78 (272)
Q Consensus 5 ~~fi~~~s~~~v~~--l~~~~f~~~~~~~~~~~v~fy~~~-~~c~~~~~~~---~~~a~~~~~~i~~~~vd~~~~~~~~~ 78 (272)
+-|++.++...|.. ..++-|.+--..++|+++-.=..| -=|.-+...= .++|+.++..++-++||-++. |+
T Consensus 15 SpYL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREER---PD 91 (667)
T COG1331 15 SPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREER---PD 91 (667)
T ss_pred CHHHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhc---cC
Confidence 45677776665544 467778888889999999887778 7787766532 688999998888899998877 65
Q ss_pred HHhhc-------CCCCCCceEEEEEeCCcce
Q 024107 79 FLTLF-------GLEESKNTVVTAFDNKAIS 102 (272)
Q Consensus 79 l~~~~-------~i~~~~P~i~~~~~~~~~~ 102 (272)
+-+.| ...+-+|-- +|.+++...
T Consensus 92 vD~~Ym~~~q~~tG~GGWPLt-VfLTPd~kP 121 (667)
T COG1331 92 VDSLYMNASQAITGQGGWPLT-VFLTPDGKP 121 (667)
T ss_pred HHHHHHHHHHHhccCCCCcee-EEECCCCce
Confidence 55444 445433988 677776543
No 481
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=28.49 E-value=2.1e+02 Score=20.02 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=33.2
Q ss_pred eEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcC----CCCCCceE
Q 024107 34 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFG----LEESKNTV 92 (272)
Q Consensus 34 ~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~----i~~~~P~i 92 (272)
.+|.|..++ +.|..+...|.+ +.....+..+|-.... .++-+.+. -... |.+
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g--~eiq~~l~~~tg~~tv-P~v 71 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDG--SEIQKALKKLTGQRTV-PNV 71 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCc--HHHHHHHHHhcCCCCC-CEE
Confidence 567888899 999998888877 4434556666665432 34433332 3355 888
No 482
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=28.21 E-value=90 Score=24.03 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=36.8
Q ss_pred CCCCChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHhhcC-CCcEEEEEEC
Q 024107 107 ESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNS-HKDVLLEVYT 169 (272)
Q Consensus 107 ~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~-~~~~lv~f~~ 169 (272)
+|+.-+..-.+.+.+-++++-...-...|. .++++.+-++++.. +.|++|+|=.
T Consensus 7 DGD~~A~ravE~aa~~iGgRCIS~S~GNPT---------~lsG~elV~lIk~a~~DPV~VMfDD 61 (180)
T PF14097_consen 7 DGDEYAKRAVEIAAKNIGGRCISQSAGNPT---------PLSGEELVELIKQAPHDPVLVMFDD 61 (180)
T ss_pred CChHHHHHHHHHHHHHhCcEEEeccCCCCC---------cCCHHHHHHHHHhCCCCCEEEEEeC
Confidence 455556666777777778775544333333 46889988888654 7799999954
No 483
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=27.93 E-value=1.3e+02 Score=22.90 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=36.1
Q ss_pred CCCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCC
Q 024107 159 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 203 (272)
Q Consensus 159 ~~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~ 203 (272)
+++.+.+.++++.++.|.-+...++.+|+.|.+. ++.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~-~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFEL-DVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEE-EEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCC-CeEEEEeccc
Confidence 4567788899999999999999999999999863 4777666654
No 484
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.91 E-value=87 Score=24.30 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=25.8
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHH
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 119 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi 119 (272)
...+...||.+. |++ .+ ++ +|...|..+.+.+.+-+
T Consensus 165 ~~~a~~~gv~G~-Pt~-vv-~g----~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGV-PFF-VF-NG----KYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcC-CEE-EE-CC----eEeecCCCCHHHHHHHh
Confidence 456778899999 999 44 32 34457888888776654
No 485
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=27.88 E-value=2.2e+02 Score=20.06 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=36.3
Q ss_pred CCcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 024107 160 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 205 (272)
Q Consensus 160 ~~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~ 205 (272)
++.+||.=.|+.|+.-. ....++++.++|+.. .+.+..+-|...
T Consensus 21 Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-gl~ILaFPcnqF 64 (108)
T PF00255_consen 21 GKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-GLEILAFPCNQF 64 (108)
T ss_dssp TSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-TEEEEEEEBSTT
T ss_pred CCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-CeEEEeeehHHh
Confidence 67788888899999888 666899999999864 588988888665
No 486
>PRK09301 circadian clock protein KaiB; Provisional
Probab=27.48 E-value=2.2e+02 Score=19.94 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=51.5
Q ss_pred CcEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCCcCceEeeCCCC-
Q 024107 161 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSS- 237 (272)
Q Consensus 161 ~~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~~~~~~~~g~~~- 237 (272)
..++=.|.+..-...+.....+..+-+.+... .+.+-.||+.++ +.+ .+++-++||++=.-..-.. +..|..+
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~r---riiGDlsd 81 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVR---KIIGDLSD 81 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcc---eeeccccc
Confidence 44555666666666666666777776655443 588888999999 664 7799999997644333211 5778755
Q ss_pred HHHHH
Q 024107 238 SKNIA 242 (272)
Q Consensus 238 ~~~l~ 242 (272)
.+.++
T Consensus 82 ~~kVL 86 (103)
T PRK09301 82 REKVL 86 (103)
T ss_pred HHHHH
Confidence 34443
No 487
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.37 E-value=2.4e+02 Score=21.57 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCcceEEEEEEcc--cchHHHHHHHHHHHHHhcC---ceEEEEEeCCC-cccchhHHhhcC
Q 024107 30 SPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKG---KIMFTAVDIAD-EDLAKPFLTLFG 84 (272)
Q Consensus 30 ~~~~~~v~fy~~~--~~c~~~~~~~~~~a~~~~~---~i~~~~vd~~~-~~~~~~l~~~~~ 84 (272)
.++.++|.|.-.. .-|-.....+.++.+.+.. ++.++.|..+- .+. ++.+++|.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DT-p~~L~~Y~ 110 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDT-PEVLKKYA 110 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC--HHHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCC-HHHHHHHH
Confidence 4567777766555 7887777777776666552 34444444441 111 45555544
No 488
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=27.13 E-value=85 Score=21.90 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=31.7
Q ss_pred EECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCcc--cCCCeEEEE-eCCC
Q 024107 167 VYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQV--EEYPTLLFY-PAGD 225 (272)
Q Consensus 167 f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~-~~~~v--~~~P~l~~~-~~~~ 225 (272)
||...|+.|......+... .....+.|..+..... ++ ..+++ ...-+.++. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7899999999887776666 2111577776633333 32 23333 334544443 4554
No 489
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=26.70 E-value=63 Score=20.24 Aligned_cols=49 Identities=29% Similarity=0.442 Sum_probs=27.3
Q ss_pred EEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCCC--CC---CC-cccCCCeEE
Q 024107 165 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HP---KL-QVEEYPTLL 219 (272)
Q Consensus 165 v~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~~--~~---~~-~v~~~P~l~ 219 (272)
.+|+.++|+.|+..+-.+... +. .+....++....+ .+ +. ....+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----gi-~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----GL-ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----CC-CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 467889999998766544443 22 3444455543321 12 22 234679885
No 490
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=26.70 E-value=2.4e+02 Score=19.99 Aligned_cols=46 Identities=4% Similarity=0.160 Sum_probs=28.0
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHhhcCCCCCCceEEEEEeC
Q 024107 43 DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 98 (272)
Q Consensus 43 ~~c~~~~~~~~~~a~~~~~~i~~~~vd~~~~~~~~~l~~~~~i~~~~P~i~~~~~~ 98 (272)
+........+.++..+-... .+..-. |.+.++|+|+.. |++ .+..+
T Consensus 35 g~~~~t~~~~~~l~~~~~~~-----~~v~Id---P~~F~~y~I~~V-Pa~-V~~~~ 80 (113)
T PF09673_consen 35 GSFKPTAKAIQELLRKDDPC-----PGVQID---PRLFRQYNITAV-PAF-VVVKD 80 (113)
T ss_pred CCHHHHHHHHHHHhhccCCC-----cceeEC---hhHHhhCCceEc-CEE-EEEcC
Confidence 43344444444444444332 223334 789999999999 999 56555
No 491
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=25.78 E-value=1.4e+02 Score=22.01 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCeEEEEeCCCCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 215 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 215 ~P~l~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
-|.+.+..++++.+-......++.+.+.+|+++.++
T Consensus 117 ~P~l~llDadgk~kE~lsI~kWntdtl~eff~ekle 152 (154)
T KOG3384|consen 117 DPVLKLLDADGKHKESLSIDKWNTDTLEEFFREKLE 152 (154)
T ss_pred CCeeEeecCCCCccceeeecccChHHHHHHHHHHhc
Confidence 388899987777754456678999999999998764
No 492
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=25.43 E-value=2.5e+02 Score=19.89 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCcEEEEEECCC-ChhHHHhHHHHHHHHHHh------cCCC--ceEEEEEeCCCCC-CCCC-cc-cCCCeEEEEeCCCCc
Q 024107 160 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHF------KGLD--NLVIAKIDASANE-HPKL-QV-EEYPTLLFYPAGDKA 227 (272)
Q Consensus 160 ~~~~lv~f~~~~-C~~c~~~~~~~~~~a~~~------~~~~--~v~~~~id~~~~~-~~~~-~v-~~~P~l~~~~~~~~~ 227 (272)
..+.+|+|-..- -+.-...++.++.+|++. ++++ .+.|+..+.+.-+ +..| +. ...|.+++..=-...
T Consensus 14 ~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r~ 93 (116)
T cd03071 14 EGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARA 93 (116)
T ss_pred CCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEeccccc
Confidence 456666676433 335677778888887764 2322 2334444433332 2333 44 356888888432221
Q ss_pred CceEeeCCCCHHHHHHHHHHHc
Q 024107 228 NPIKVSARSSSKNIAAFIKEQL 249 (272)
Q Consensus 228 ~~~~~~g~~~~~~l~~~i~~~~ 249 (272)
..+.-...++.+.+.+|+.+.+
T Consensus 94 ~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 94 KYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred eEeCchHhcCHHHHHHHHHHhh
Confidence 1222235688999999999875
No 493
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=25.16 E-value=1.5e+02 Score=23.58 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=29.0
Q ss_pred hhHHhhcCCCCCCceEEEEEeCCcceeecCCCCCChHHHHHHHHH
Q 024107 77 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR 121 (272)
Q Consensus 77 ~~l~~~~~i~~~~P~i~~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 121 (272)
|.+.+.|+|+.. |+| .+....+..+ ..|.++...-.+.+..
T Consensus 152 P~lF~~F~I~~V-Paf-Vv~C~~~yD~--I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 152 PTLFSQYGIRSV-PAL-VVFCSQGYDI--IRGNLRVGQALEKVAA 192 (212)
T ss_pred HHHHHhcCCccc-cEE-EEEcCCCCCE--EEecccHHHHHHHHHh
Confidence 789999999999 999 5655443222 2678877666666554
No 494
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=24.95 E-value=1e+02 Score=26.83 Aligned_cols=76 Identities=22% Similarity=0.378 Sum_probs=43.8
Q ss_pred CChhHHHhHHHHHHHHHH----hcCCC-ceEEEEEeCCCC---CC--CCCccc-CC-CeEEEEeCCCCcCceEe-eCCCC
Q 024107 171 WCVTCETTSKQIEKLAKH----FKGLD-NLVIAKIDASAN---EH--PKLQVE-EY-PTLLFYPAGDKANPIKV-SARSS 237 (272)
Q Consensus 171 ~C~~c~~~~~~~~~~a~~----~~~~~-~v~~~~id~~~~---~~--~~~~v~-~~-P~l~~~~~~~~~~~~~~-~g~~~ 237 (272)
.|+.|-...-.+.+++.+ +.+.. .++++-+-|--| +- +.+++. +- -...+|+.|+.+. +. ....-
T Consensus 270 SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~--k~~~ee~~ 347 (359)
T PF04551_consen 270 SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVK--KVIPEEEI 347 (359)
T ss_dssp E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEE--EE-CSTCH
T ss_pred eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEE--ecCCHHHH
Confidence 467775555445544444 44333 699999999888 33 366766 33 4488899888664 44 45555
Q ss_pred HHHHHHHHHHH
Q 024107 238 SKNIAAFIKEQ 248 (272)
Q Consensus 238 ~~~l~~~i~~~ 248 (272)
.+.|++-|+++
T Consensus 348 vd~L~~~I~~~ 358 (359)
T PF04551_consen 348 VDELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 68888887765
No 495
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=22.96 E-value=2.5e+02 Score=19.00 Aligned_cols=72 Identities=15% Similarity=-0.009 Sum_probs=47.6
Q ss_pred cEEEEEECCCChhHHHhHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCcccCCCeEEEEeCCCCcCceEeeCCCC
Q 024107 162 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSS 237 (272)
Q Consensus 162 ~~lv~f~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~id~~~~-~~~-~~~v~~~P~l~~~~~~~~~~~~~~~g~~~ 237 (272)
.++=.|.+..-..+......+..+.+..... .+.+-.||..++ +.+ .+++-++||++=--..-.. +..|.++
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~r---riiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVR---KIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcc---eeecccc
Confidence 3444555666666666666777776655432 588888999999 664 7799999997644333221 5777755
No 496
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=21.82 E-value=2.3e+02 Score=24.36 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCCCCCcccCCCeEEEEeC-CCCcCceEeeCCCCHHHHHHHHHHHcC
Q 024107 180 KQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPA-GDKANPIKVSARSSSKNIAAFIKEQLK 250 (272)
Q Consensus 180 ~~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~v~~~P~l~~~~~-~~~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (272)
|.++++...-. ++.++++|...+++.+.++.++ |.+|+. -.....+......+.+++.+.+...+.
T Consensus 25 P~ik~Ild~as---hva~Y~fd~~~~eWnKtdiEGt--ffvY~R~~~p~~gf~i~NR~~~~nf~e~lt~d~~ 91 (335)
T KOG2868|consen 25 PYIKSILDVAS---HVALYTFDFGANEWNKTDIEGT--FFVYKRDASPRHGFLIVNRLSPDNFVEPLTKDLI 91 (335)
T ss_pred HHHHHHHhhcc---ceeEEEeccccchhhhccceeE--EEEEEccCCCccceEeecCCChhhhhhhcCCCee
Confidence 34444444333 6888899888887776666664 666653 333334445566777777777766544
No 497
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=21.64 E-value=1.2e+02 Score=23.63 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHhcCccccccccCCCCCCCCCCeEEecccchhHHhhcCCCcEEEEEECCC
Q 024107 110 LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPW 171 (272)
Q Consensus 110 ~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~v~~~~~~~lv~f~~~~ 171 (272)
-+.++..+.+.+.. |+-+..+....-+ .-..++-..+.+.+.+.++|+++.|.+.|
T Consensus 88 ~sle~a~~~I~~~~-G~~P~~v~TsAr~-----~~~~is~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 88 DSLEEAIEDIEEEE-GKRPLLVATSARK-----YPNTISYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp SSHHHHHHHHHHHH-SS--EEEE--SS-------SS-B-HHHHHHHHHH--S-EEEEE--TT
T ss_pred hhHHHHHHHHHHHh-CCCCEEEEecCcC-----CCCCcCHHHHHHHHhccCCeEEEEecCCC
Confidence 46777777777763 3332222221111 12235666777777778999999999988
No 498
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=21.60 E-value=3e+02 Score=24.07 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=43.6
Q ss_pred ChhHHHhH----HHHHHHHHHhcCCC-ceEEEEEeCCCCCC-----CCCcccCC-CeEEEEeCCCCcCceEeeCCCCHHH
Q 024107 172 CVTCETTS----KQIEKLAKHFKGLD-NLVIAKIDASANEH-----PKLQVEEY-PTLLFYPAGDKANPIKVSARSSSKN 240 (272)
Q Consensus 172 C~~c~~~~----~~~~~~a~~~~~~~-~v~~~~id~~~~~~-----~~~~v~~~-P~l~~~~~~~~~~~~~~~g~~~~~~ 240 (272)
|+.|.... ....++-+.|.+.+ .++++.+-|.-|.+ ..+++.+- +...+|..|+.+. ...+..-.+.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~--kv~~~~~~~~ 348 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIK--TLPEENIVEE 348 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEee--eeChHhHHHH
Confidence 55554333 44455556666654 58999999965522 35677654 5577888887654 3333333445
Q ss_pred HHHHHHHH
Q 024107 241 IAAFIKEQ 248 (272)
Q Consensus 241 l~~~i~~~ 248 (272)
|.+-|.+.
T Consensus 349 l~~~i~~~ 356 (360)
T PRK00366 349 LEAEIEAY 356 (360)
T ss_pred HHHHHHHH
Confidence 55544433
No 499
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=3.4e+02 Score=20.57 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=38.6
Q ss_pred ceEEEEEEcc-cchHHHHHHHHHHHHHhcCceEEEEEeCC---CcccchhHHhhcCCCCC
Q 024107 33 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA---DEDLAKPFLTLFGLEES 88 (272)
Q Consensus 33 ~~~v~fy~~~-~~c~~~~~~~~~~a~~~~~~i~~~~vd~~---~~~~~~~l~~~~~i~~~ 88 (272)
.++..|=+-. +-|..-...|.+.|.++.+ +.+..|-.+ .- .++|...||+..
T Consensus 47 ~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~DLPFAq---~RfC~aeGi~nv 102 (158)
T COG2077 47 KVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMDLPFAQ---KRFCGAEGIENV 102 (158)
T ss_pred EEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCCChhHH---hhhhhhcCcccc
Confidence 4444455555 9999999999999999998 555555444 33 689999999876
Done!