BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024108
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZ6|D Chain D, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 265
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/263 (88%), Positives = 248/263 (94%), Gaps = 7/263 (2%)
Query: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYRE
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 61 VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
VI+ILMQRHVLVD KVRTDKTYPAGFMDV+SIPKT EN+RLLYDTKGRFRL S++DE+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 121 ALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFI 180
FKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKANDTIK+DLETNKI +FI
Sbjct: 121 -------FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFI 173
Query: 181 KFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTK 240
KFDVGNVVMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG K
Sbjct: 174 KFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNK 233
Query: 241 PWVSLPKGKGIKLSIIEEARKRQ 263
PWVSLPKGKGIKLSIIEE RKR
Sbjct: 234 PWVSLPKGKGIKLSIIEEQRKRD 256
>pdb|3IZB|D Chain D, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5C|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 261
Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/264 (65%), Positives = 209/264 (79%), Gaps = 7/264 (2%)
Query: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL RE
Sbjct: 1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGRE 60
Query: 61 VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
V AILMQRHV VD KVRTD TYPAGFMDV+++ TNENFRL+YD KGRF +H I DEEA
Sbjct: 61 VKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEA- 119
Query: 121 ALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFI 180
+KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL + KIT+FI
Sbjct: 120 ------SYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFI 173
Query: 181 KFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTK 240
KFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+ K
Sbjct: 174 KFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGK 233
Query: 241 PWVSLPKGKGIKLSIIEEARKRQA 264
P++SLPKGKGIKLSI EE +R+A
Sbjct: 234 PYISLPKGKGIKLSIAEERDRRRA 257
>pdb|2XZM|W Chain W, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|W Chain W, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 260
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 188/265 (70%), Gaps = 10/265 (3%)
Query: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
MARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL R+
Sbjct: 1 MARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRD 60
Query: 61 VIAIL--MQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEE 118
V IL +++V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L S+ EE
Sbjct: 61 VTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEE 120
Query: 119 AKALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITE 178
AK +KL KV + G IPYI T+D RTIR+P+P IK DT+K DL NKI
Sbjct: 121 AK-------YKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIEN 173
Query: 179 FIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKG 238
F + GNV + G N GRVGII++ EKH+GSF+ H++DA G+ FATRLGN+F +G+G
Sbjct: 174 FAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQG 233
Query: 239 TKPWVSLPKGKGIKLSIIEEARKRQ 263
K W+ LP G G++ +I+EE RKR+
Sbjct: 234 KKSWIELPSGDGVRETILEE-RKRK 257
>pdb|3ZEY|1 Chain 1, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 273
Score = 258 bits (659), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/254 (53%), Positives = 170/254 (66%), Gaps = 8/254 (3%)
Query: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAIL 65
KKHLKRL APK WML KL G FAP+P +GPHK RECL L++I+RNRLKYAL E IL
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRAGPHKLRECLSLLIIIRNRLKYALNALEAQMIL 62
Query: 66 MQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKALILL 125
Q V VD K R D YPAGFMDVV IPKT + FR+LYD KGRF L +R EA++ I
Sbjct: 63 RQGLVCVDGKPRKDGKYPAGFMDVVEIPKTGDRFRILYDVKGRFAL--VRVSEAESSI-- 118
Query: 126 FQFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVG 185
K+ KV +V G IP T+DG IRYPDP DT+ D++ K+ + IK G
Sbjct: 119 ---KMMKVVNVYTGTGRIPVAVTHDGHRIRYPDPRTSRGDTLVYDVKEKKVLDLIKIGNG 175
Query: 186 NVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPW-VS 244
VVMVTGG NRGR+G I + E+H G+F+ ++DA GHEFATR N+F IGK V+
Sbjct: 176 KVVMVTGGANRGRIGEIVSIERHPGAFDIARLKDASGHEFATRATNIFVIGKDMSSVPVT 235
Query: 245 LPKGKGIKLSIIEE 258
LPK +G+++++I+E
Sbjct: 236 LPKQQGLRINVIQE 249
>pdb|3J20|E Chain E, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 243
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 15/252 (5%)
Query: 1 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYR 59
MAR G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T R
Sbjct: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
Query: 60 EVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEA 119
E IL + LVD +VR D +P G MDVVSIP+T E++R+L + G+ LH I ++EA
Sbjct: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEA 120
Query: 120 KALILLFQFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNK 175
K ++R+ + + +N +DG +I D + T+ + + +
Sbjct: 121 -------FIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSY-TVLMKVPERE 172
Query: 176 ITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFT 234
I E + F+ G V VT G+N R G I++ + G + + I+D G F T F
Sbjct: 173 ILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFV 232
Query: 235 IGKGTKPWVSLP 246
+G KP +SLP
Sbjct: 233 VGT-DKPKISLP 243
>pdb|3KBG|A Chain A, Crystal Structure Of The 30s Ribosomal Protein S4e From
Thermoplasma Acidophilum. Northeast Structural Genomics
Consortium Target Tar28
Length = 213
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 97/213 (45%), Gaps = 14/213 (6%)
Query: 36 HKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKT 95
H + + L+ I+R+ LK + RE IL V VD K +K + GF DV+ I
Sbjct: 2 HPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFXDVIEI--N 59
Query: 96 NENFRLLYDTKGRFRLHSIRDEEAKALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIR 155
E++R++Y+ +G L E A KL KVRS + T+DGRT
Sbjct: 60 GESYRVVYNDQGALVLXKETKERASX-------KLLKVRSKVIAPGNRIQLGTHDGRTFI 112
Query: 156 YPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET- 214
D IK D + + + KI+E IK GN +T G + + G I E +GS
Sbjct: 113 TDDKSIKVGDVLAVSVPDXKISEIIKXQPGNKAYITAGSHVNQTGTISKIEAKEGSSANL 172
Query: 215 IHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 247
+H Q+ F+T +VF IG +V P+
Sbjct: 173 VHFQEG----FSTIKDHVFXIGSSKFSFVLSPE 201
>pdb|4H3V|A Chain A, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
pdb|4H3V|B Chain B, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
Length = 390
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM-DVVSIPKTNENFRLLYDTKGRF 109
R TYR V AI + R ++ D K+ T + A ++ D ++ P+ ++RL D G
Sbjct: 131 RSXVGFTYRRVPAIALARKLVADGKIGTVRHVRAQYLQDWIADPEAPLSWRLDKDKAGSG 190
Query: 110 RLHSI 114
L I
Sbjct: 191 ALGDI 195
>pdb|2AE7|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AEC|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man-
Beta-Or
pdb|2AEC|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man-
Beta-Or
pdb|2AEC|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man-
Beta-Or
pdb|2AES|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man-
Beta-Or
pdb|2AES|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man-
Beta-Or
pdb|2AES|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man-
Beta-Or
pdb|2AGD|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man-
Beta-Or
pdb|2AGD|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man-
Beta-Or
pdb|2AGD|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man-
Beta-Or
pdb|2AH9|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2FY7|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-galactosyltransferase Mutant M339h In Apo Form
pdb|2FYA|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1, 4-Galactosyltransferase Mutant M339h Complex
With Manganese
pdb|2FYB|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-Galactosyltransferase Mutant M339h In Complex
With Mn And Udp-Galactose In Open Conformation
pdb|3EE5|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|4EE3|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE4|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE5|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EEA|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEG|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEM|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEO|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
Length = 287
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTY 58
K+GG +AP+ PHK + +I+ RNR LKY L Y
Sbjct: 51 KMGGRYAPRDCVSPHK----VAIIIPFRNRQEHLKYWLYY 86
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 46 LILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDT 105
++L RL Y L R+V LVDA + PA V K F L YDT
Sbjct: 234 VMLSTRLPYVLLRRDVY------RPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDT 287
Query: 106 K 106
K
Sbjct: 288 K 288
>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NHE|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
Length = 286
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPXDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1,
4-Galactosyltransferase In Complex With
Alpha-Lactalbumin, Glucose, Mn, And Udp-N-
Acetylgalactosamine
pdb|2FYD|D Chain D, Catalytic Domain Of Bovine Beta 1,
4-Galactosyltransferase In Complex With
Alpha-Lactalbumin, Glucose, Mn, And Udp-N-
Acetylgalactosamine
Length = 286
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase
Mutant Arg228lys In Complex With Alpha-Lactalbumin In
The Presence Of Udp-Galactose And Mn
pdb|1YRO|D Chain D, Crystal Structure Of Beta14,-Galactosyltransferase
Mutant Arg228lys In Complex With Alpha-Lactalbumin In
The Presence Of Udp-Galactose And Mn
Length = 286
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NMM|D Chain D, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1O0R|A Chain A, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
pdb|1O0R|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
Length = 286
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
pdb|1FR8|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
Length = 288
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 52 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 97
>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And
Manganese
pdb|1TVY|B Chain B, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And
Manganese
pdb|1TW1|A Chain A, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And
Magnesium
pdb|1TW1|B Chain B, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And
Magnesium
pdb|1TW5|A Chain A, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|1TW5|B Chain B, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|2FYC|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYC|D Chain D, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
Length = 286
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NF5|D Chain D, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NKH|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
And Manganese
pdb|1NKH|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
And Manganese
pdb|1NQI|B Chain B, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NQI|D Chain D, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NWG|B Chain B, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1NWG|D Chain D, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1O23|B Chain B, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1O23|D Chain D, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1OQM|B Chain B, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1OQM|D Chain D, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
Length = 286
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
pdb|1FGX|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
Length = 288
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 52 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 97
>pdb|1PZY|B Chain B, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZY|D Chain D, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZT|A Chain A, Crystal Structure Of
W314a-beta-1,4-galactosyltransferase (b4gal-t1)
Catalytic Domain Without Substrate
Length = 286
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 71
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,053,172
Number of Sequences: 62578
Number of extensions: 331392
Number of successful extensions: 681
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 19
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)