Query 024108
Match_columns 272
No_of_seqs 110 out of 331
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 2E-121 5E-126 838.5 20.5 264 1-271 1-264 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 8E-121 3E-125 832.4 18.3 260 1-267 1-260 (261)
3 2xzm_W 40S ribosomal protein S 100.0 2E-118 7E-123 816.0 26.5 257 1-264 1-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 6E-109 2E-113 748.6 22.0 238 1-246 1-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 7.9E-84 2.7E-88 574.8 20.3 203 35-251 1-204 (213)
6 2cqj_A BRMS2, U3 small nucleol 96.8 0.00064 2.2E-08 50.4 2.7 43 52-94 17-61 (71)
7 1p9k_A ORF, hypothetical prote 96.8 0.00051 1.7E-08 51.0 2.2 57 42-101 21-77 (79)
8 3j20_D 30S ribosomal protein S 96.1 0.0026 9.1E-08 55.2 2.8 44 52-95 112-157 (180)
9 1c05_A Ribosomal protein S4 de 95.9 0.0086 2.9E-07 50.4 4.9 50 44-94 53-102 (159)
10 3bbn_D Ribosomal protein S4; s 95.8 0.0091 3.1E-07 52.6 5.1 43 52-94 98-140 (201)
11 2vqe_D 30S ribosomal protein S 95.2 0.018 6.2E-07 50.6 4.8 43 52-94 108-150 (209)
12 3u5c_J 40S ribosomal protein S 95.1 0.0063 2.1E-07 53.7 1.4 44 52-95 116-161 (197)
13 2xzm_D Ribosomal protein S4 co 95.0 0.01 3.5E-07 51.4 2.5 43 51-93 115-159 (181)
14 1dm9_A Hypothetical 15.5 KD pr 95.0 0.059 2E-06 44.0 7.0 61 39-101 6-66 (133)
15 1ksk_A Ribosomal small subunit 94.8 0.043 1.5E-06 47.8 5.9 65 41-107 3-73 (234)
16 3r8n_D 30S ribosomal protein S 94.5 0.012 4E-07 52.1 1.7 43 52-94 104-146 (205)
17 2do3_A Transcription elongatio 94.4 0.067 2.3E-06 40.0 5.3 46 182-231 18-63 (69)
18 2ckk_A KIN17; beta barrel, rib 94.4 0.091 3.1E-06 43.0 6.6 41 164-207 56-96 (127)
19 1vio_A Ribosomal small subunit 94.1 0.053 1.8E-06 47.6 5.0 65 42-108 3-73 (243)
20 3dh3_A Ribosomal large subunit 93.4 0.11 3.7E-06 47.6 5.9 67 40-109 5-79 (290)
21 2k6p_A Uncharacterized protein 93.2 0.023 7.9E-07 42.8 0.9 53 46-100 5-57 (92)
22 1v9f_A Ribosomal large subunit 91.6 0.069 2.4E-06 48.9 2.1 53 40-93 15-67 (325)
23 2ktl_A Tyrosyl-tRNA synthetase 91.3 0.17 5.9E-06 43.3 4.2 75 43-118 51-139 (164)
24 3iz6_C 40S ribosomal protein S 91.0 0.0064 2.2E-07 53.5 -5.2 42 52-93 118-159 (195)
25 2jan_A Tyrosyl-tRNA synthetase 90.6 0.5 1.7E-05 45.7 7.1 66 43-114 357-422 (432)
26 3hp7_A Hemolysin, putative; st 90.0 0.17 5.8E-06 46.3 3.1 52 42-94 7-60 (291)
27 1h3f_A Tyrosyl-tRNA synthetase 88.5 0.57 1.9E-05 45.2 5.7 44 41-85 368-411 (432)
28 1jil_A Tyrrs, tyrosyl-tRNA syn 85.0 0.18 6E-06 48.5 0.0 48 41-89 352-399 (420)
29 1vq8_T 50S ribosomal protein L 83.9 1.3 4.3E-05 36.2 4.6 56 178-236 39-101 (120)
30 3u5e_Y L33, YL33, 60S ribosoma 83.8 1.5 5E-05 36.2 5.0 56 178-236 46-108 (127)
31 3j21_U 50S ribosomal protein L 83.6 1.8 6E-05 35.4 5.4 55 179-236 43-104 (121)
32 1nz9_A Transcription antitermi 83.5 1.7 5.9E-05 30.1 4.7 43 180-224 3-45 (58)
33 3iz5_Y 60S ribosomal protein L 78.8 2.8 9.5E-05 35.5 5.1 72 178-261 45-123 (150)
34 2ts1_A Tyrosyl-tRNA synthetase 78.1 0.44 1.5E-05 45.9 0.0 44 42-86 352-395 (419)
35 3r8s_U 50S ribosomal protein L 69.4 4.1 0.00014 32.2 3.6 27 181-207 3-29 (102)
36 3v2d_Y 50S ribosomal protein L 68.6 3.2 0.00011 33.2 2.9 29 180-208 5-33 (110)
37 4a17_S RPL26, 60S ribosomal pr 68.4 6 0.00021 32.9 4.6 56 178-236 45-107 (135)
38 2ftc_N Mitochondrial ribosomal 67.0 6.4 0.00022 30.7 4.3 23 185-207 1-23 (96)
39 2zjr_R 50S ribosomal protein L 66.6 4.2 0.00014 32.7 3.2 36 181-219 15-50 (115)
40 2zkr_t 60S ribosomal protein L 64.1 3.8 0.00013 34.4 2.7 55 179-236 46-108 (145)
41 4a18_F RPL14; ribosome, eukary 64.1 5 0.00017 33.0 3.3 32 182-217 7-38 (126)
42 2e6z_A Transcription elongatio 56.4 4.6 0.00016 28.4 1.6 28 179-206 5-32 (59)
43 2wg5_A General control protein 55.7 27 0.00094 27.2 6.1 50 141-190 49-104 (109)
44 3iz5_N 60S ribosomal protein L 54.8 6.5 0.00022 32.6 2.4 26 182-207 7-32 (134)
45 4a18_N RPL27, ribosomal protei 46.7 12 0.00042 31.4 2.9 27 182-208 5-31 (144)
46 3izc_N 60S ribosomal protein R 46.4 10 0.00036 31.5 2.4 32 182-217 15-46 (138)
47 3j21_5 50S ribosomal protein L 46.0 9.1 0.00031 29.0 1.8 25 182-206 4-28 (83)
48 2joy_A 50S ribosomal protein L 45.1 11 0.00039 29.0 2.3 51 182-236 4-58 (96)
49 2jvv_A Transcription antitermi 43.7 25 0.00084 29.1 4.4 30 179-208 125-154 (181)
50 3p8b_B Transcription antitermi 42.4 13 0.00046 30.0 2.5 29 180-208 90-118 (152)
51 2in0_A Endonuclease PI-MTUI; h 38.6 52 0.0018 25.6 5.4 27 211-237 53-79 (139)
52 3m9b_A Proteasome-associated A 37.4 53 0.0018 29.8 5.7 51 159-224 133-183 (251)
53 2laq_A Accessory gland-specifi 36.4 17 0.00058 23.7 1.7 18 17-37 2-19 (36)
54 2x1d_A Acyl-coenzyme A\:6-amin 34.2 73 0.0025 28.4 6.2 28 40-68 177-204 (357)
55 1i3z_A EWS/FLI1 activated tran 31.0 1.4E+02 0.0048 21.8 6.5 54 55-112 9-66 (103)
56 2iwa_A Glutamine cyclotransfer 29.4 1.3E+02 0.0045 26.5 7.0 46 135-183 141-191 (266)
57 1d4t_A T cell signal transduct 26.4 1.3E+02 0.0043 22.2 5.5 54 55-112 10-67 (104)
58 2qf4_A Cell shape determining 24.9 2.4E+02 0.0081 23.3 7.4 60 158-237 106-166 (172)
59 1ka6_A SH2 domain protein 1A; 23.8 1.3E+02 0.0043 23.3 5.2 53 56-112 11-67 (128)
60 3zv0_C H/ACA ribonucleoprotein 22.9 2.1E+02 0.0071 24.8 6.8 96 29-139 45-151 (195)
61 3gvz_A Uncharacterized protein 22.5 50 0.0017 29.8 3.0 30 38-67 103-132 (299)
62 4gop_B Putative uncharacterize 21.8 2.7E+02 0.0091 21.7 6.8 84 68-154 27-114 (136)
63 3hrd_D Nicotinate dehydrogenas 21.4 53 0.0018 27.5 2.6 53 40-96 21-81 (160)
64 3iuw_A Activating signal coint 21.4 56 0.0019 24.8 2.5 17 154-170 31-47 (83)
65 2j5u_A MREC protein; bacterial 20.1 1.7E+02 0.0059 25.7 5.9 60 158-237 167-227 (255)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-121 Score=838.52 Aligned_cols=264 Identities=90% Similarity=1.412 Sum_probs=199.3
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccc
Q 024108 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDK 80 (272)
Q Consensus 1 MarG~kkHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~ 80 (272)
|||||++|||||+||+||||+||+++|||+||||||++++||||++||||+|+||+|++||++||+||+|+||||||||+
T Consensus 1 Marg~kkHlKRl~AP~~W~l~kk~~~fa~rpspGPHkl~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~ 80 (265)
T 3iz6_D 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDK 80 (265)
T ss_dssp ------------------------------------------CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCT
T ss_pred CCCCcccccccccCCcccccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChHhHhhhhccceeeEEEEEeEEEeeCCceEEEccCCeeeecCCCC
Q 024108 81 TYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL 160 (272)
Q Consensus 81 k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~~~~~~~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ 160 (272)
+||||||||||||+|||+|||+||++|+|.+|+|++|||+ ||||||++|+++++|+|||+|||||||+||||.
T Consensus 81 ~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~-------~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ 153 (265)
T 3iz6_D 81 TYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK-------FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPI 153 (265)
T ss_dssp TCCCCTTCEEECCSSCCEEEEEECTTSCEEEEEECHHHHT-------CEEEEEEEEECCSSSCCEEEETTSCCCBSCSSC
T ss_pred CCCCcEEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcc-------eEEEEEEEEEEccCCceEEEeecceEEecCCCC
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cccCCeEEEecCCCceeeEEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCC
Q 024108 161 IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTK 240 (272)
Q Consensus 161 ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIGk~~k 240 (272)
||+||||+||||+++|+|||||++||+||||||+|+|++|+|++|++|+|||++||++|++|++|+|+++||||||++++
T Consensus 154 ik~~DTv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~k 233 (265)
T 3iz6_D 154 IKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNK 233 (265)
T ss_dssp CCTTCEEEECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSC
T ss_pred cccCCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ceeeCCCCcceeeehHHHHHHHHHHHhhhhc
Q 024108 241 PWVSLPKGKGIKLSIIEEARKRQALATSAAA 271 (272)
Q Consensus 241 p~Islp~~~gi~~~~~e~~~~~~~~~~~~~~ 271 (272)
||||||++|||+|+++|||++|++++++++.
T Consensus 234 p~IsLp~~kg~~~~~~eer~~~~~~~~~~~~ 264 (265)
T 3iz6_D 234 PWVSLPKGKGIKLSIIEEQRKRDAAAQAAAN 264 (265)
T ss_dssp CCCCCCCCC----------------------
T ss_pred eeEeCCCCCceeeehHHhHHHHHHHhhhhcC
Confidence 9999999999999999999999999998763
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=7.9e-121 Score=832.43 Aligned_cols=260 Identities=67% Similarity=1.105 Sum_probs=256.4
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccc
Q 024108 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDK 80 (272)
Q Consensus 1 MarG~kkHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~ 80 (272)
|||||++|||||+||+||||+||+++|||+||||||++++||||++||||+|+||+|++||++||+||+|+||||||||+
T Consensus 1 Marg~kkHlKRl~AP~~W~l~kk~~~fa~rps~GPH~l~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~ 80 (261)
T 3u5c_E 1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDT 80 (261)
T ss_dssp -CCSCCCCCBTTTSCGGGCCCSSSSSBCCCCCSSSSCGGGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCT
T ss_pred CCCCcccccccccCCcccccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChHhHhhhhccceeeEEEEEeEEEeeCCceEEEccCCeeeecCCCC
Q 024108 81 TYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL 160 (272)
Q Consensus 81 k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~~~~~~~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ 160 (272)
+||||||||||||+|||+|||+||++|+|.+|+|++|||+ ||||||++|+++++|+|||+|||||||+||||.
T Consensus 81 ~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~-------~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ 153 (261)
T 3u5c_E 81 TYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEAS-------YKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPN 153 (261)
T ss_dssp TCEEETTCEEEETTTTEEEECCBCSSSCBCCEECCTTGGG-------CEECCEEEEEECGGGCEEEEETTTEEEESCCSS
T ss_pred CCCCceEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcc-------eEEEEEEEEEEecCCceEEEEecceEEecCCCC
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cccCCeEEEecCCCceeeEEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCC
Q 024108 161 IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTK 240 (272)
Q Consensus 161 ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIGk~~k 240 (272)
||+||||+||||+++|+|||||++||+||||||+|+|++|+|++|++|+|||++||++|++|++|+|+++||||||++++
T Consensus 154 ik~~Dtv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~k 233 (261)
T 3u5c_E 154 IKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGK 233 (261)
T ss_dssp CCTTCEEEECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSC
T ss_pred cccCCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ceeeCCCCcceeeehHHHHHHHHHHHh
Q 024108 241 PWVSLPKGKGIKLSIIEEARKRQALAT 267 (272)
Q Consensus 241 p~Islp~~~gi~~~~~e~~~~~~~~~~ 267 (272)
||||||++|||+|+++|||++|++++.
T Consensus 234 p~IsLp~~kg~~~~~~eer~~~~~~~~ 260 (261)
T 3u5c_E 234 PYISLPKGKGIKLSIAEERDRRRAQQG 260 (261)
T ss_dssp CSSCCCTTTTCCCCHHHHHHHHTTTTC
T ss_pred eeEeCCCCCceeeehHHhHHHHHHhcc
Confidence 999999999999999999999997653
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=2.1e-118 Score=816.03 Aligned_cols=257 Identities=56% Similarity=0.975 Sum_probs=253.6
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhcccccHHHHHHHHhC--ceEEECCEEec
Q 024108 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQ--RHVLVDAKVRT 78 (272)
Q Consensus 1 MarG~kkHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~--g~V~VDGkvr~ 78 (272)
|||||++|||||+||+||||+||+++|||+||||||+++|||||++||||+|+||+|++||++||+| |+|+||||||+
T Consensus 1 marG~kkHlKRl~AP~~W~l~kk~~~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~ 80 (260)
T 2xzm_W 1 MARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRR 80 (260)
T ss_dssp -CCSCCCCCBGGGSCGGGTCCSSSCSBCCCCCSSSSCSSSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECC
T ss_pred CCCCccccccceeCCccceeccccceEccCCCCCCCccceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChHhHhhhhccceeeEEEEEeEEEeeCCceEEEccCCeeeecCC
Q 024108 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD 158 (272)
Q Consensus 79 D~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~~~~~~~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d 158 (272)
|++||||||||||||+|||+|||+||++|+|.+|+|++|||+ ||||||++|+++++|+|||+|||||||+|+|
T Consensus 81 D~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~-------~KLcKV~~k~~~k~G~~ql~~HDGrti~~~d 153 (260)
T 2xzm_W 81 DKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAK-------YKLLKVTAKAIGPNQIPYIVTHDSRTIRFPN 153 (260)
T ss_dssp CTTCEECTTCEEEEGGGTEEEEEEECSSSCEEEEECCTTGGG-------EEEEEEEEEEEETTTEEEEEETTTEEEESCC
T ss_pred cCCCCCcEEEEEeEcCCCCEEEEEEcCCccEEEEEcChHHcc-------cEEEEEEEEEEccCCceEEEecCCceEeccC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcccCCeEEEecCCCceeeEEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccC
Q 024108 159 PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKG 238 (272)
Q Consensus 159 ~~ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIGk~ 238 (272)
|.||+||||+||||+++|+|||||++||+||||||+|+|++|+|+++++++||+|+||++|++|++|+|+++||||||++
T Consensus 154 ~~ik~~Dtv~idl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~ 233 (260)
T 2xzm_W 154 PEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQG 233 (260)
T ss_dssp SSCCTTBEEEEETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEEST
T ss_pred CcCccCCeEEEeCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeeCCCCcceeeehHHHHHHHHH
Q 024108 239 TKPWVSLPKGKGIKLSIIEEARKRQA 264 (272)
Q Consensus 239 ~kp~Islp~~~gi~~~~~e~~~~~~~ 264 (272)
++||||||+++|||||++|||+++++
T Consensus 234 ~kp~Islp~~kgi~l~i~eer~~~~~ 259 (260)
T 2xzm_W 234 KKSWIELPSGDGVRETILEERKRKFS 259 (260)
T ss_dssp TCCSSCCSSSSSCCCCHHHHHHHHTC
T ss_pred CceeEecCCCCCeecchhhhhhhhhc
Confidence 79999999999999999999999874
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6e-109 Score=748.61 Aligned_cols=238 Identities=36% Similarity=0.576 Sum_probs=234.5
Q ss_pred CCC-CcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEecc
Q 024108 1 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTD 79 (272)
Q Consensus 1 Mar-G~kkHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D 79 (272)
||| |||+|||||+||+||||+||+++|||+||||||++++||||++||||+|+||+|.|||++||+||+|+||||+|+|
T Consensus 1 Mar~g~kkHlKRl~AP~~W~l~kk~~~~a~rps~GPH~~~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d 80 (243)
T 3j20_E 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKD 80 (243)
T ss_dssp --CCSCCCCBCSTTSCTTSCCCTTSSSCBCCCCSCSSCSTTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCC
T ss_pred CCCcCcccccccccCCcccccccccceeccCCCCCCCccccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEecc
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChHhHhhhhccceeeEEEEEeEEEeeCCceEEEccCCeeeecC--
Q 024108 80 KTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIRYP-- 157 (272)
Q Consensus 80 ~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~~~~~~~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~-- 157 (272)
++|||||||||||++++|+||++||++|+|.+|+|++|||+ ||||||++|+++++|+|||+|||||||+||
T Consensus 81 ~~ypvG~mDVIsI~kt~e~fr~i~d~kGr~~~~~I~~eea~-------~KLcKV~~k~~~~~G~~~l~~hDgr~i~~p~~ 153 (243)
T 3j20_E 81 YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAF-------IKPLRIRNKRMIKGARVQLNFHDGTNHIVSIA 153 (243)
T ss_dssp SSCEECTTCEEEETTTTEEEEEEECSSSCEEEEEECTTTTT-------EEEECCSCEEEETTTEEEECCSSCCCEECSSS
T ss_pred ccCCcccceEEEecccCceeEEEecCCCceEEEEeChhhcc-------ceEEEEeeeEEccCCeeEEEecCCceEEcccc
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred -CCCcccCCeEEEecCCCceeeEEeecCCcEEEEECCCcceeEEEEEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEE
Q 024108 158 -DPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTI 235 (272)
Q Consensus 158 -d~~ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s-~~~V~i~d~~g~~F~T~~~~vfvI 235 (272)
||.||+||||+||||++||+||||||+||+||||||+|+|++|+|++|++|+|| +|+||++|++|++|+|+++|||||
T Consensus 154 ~d~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvI 233 (243)
T 3j20_E 154 EKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVV 233 (243)
T ss_dssp SCSSCSSCEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEE
T ss_pred cCCCcccCCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEE
Confidence 999999999999999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred ccCCCceeeCC
Q 024108 236 GKGTKPWVSLP 246 (272)
Q Consensus 236 Gk~~kp~Islp 246 (272)
|+ ++||||||
T Consensus 234 Gk-~kp~islp 243 (243)
T 3j20_E 234 GT-DKPKISLP 243 (243)
T ss_dssp ES-SCSCCSCC
T ss_pred CC-CCccccCC
Confidence 98 99999997
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=7.9e-84 Score=574.79 Aligned_cols=203 Identities=33% Similarity=0.474 Sum_probs=189.9
Q ss_pred CCCCcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEc
Q 024108 35 PHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI 114 (272)
Q Consensus 35 PH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I 114 (272)
.|++++||||++||||+||||+|.|||++||+||+|+||||+|+|++||||||||||| ++|+||++||++|||.+|+|
T Consensus 1 ~Hkl~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I 78 (213)
T 3kbg_A 1 MHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKE 78 (213)
T ss_dssp ---CCSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE--TTEEEEEEECTTSCEEEEEC
T ss_pred CCcchhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe--cCceeEEEecCCCcEEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChHhHhhhhccceeeEEEEEeEEEeeCCceEEEccCCeeeecCCCCcccCCeEEEecCCCceeeEEeecCCcEEEEECCC
Q 024108 115 RDEEAKALILLFQFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGR 194 (272)
Q Consensus 115 ~~eEa~~~~~~~~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~ 194 (272)
++|||+ ||||||++|+++++|+|||+|||||||+||||.||+||||++|||++||+|||||++||+||||||+
T Consensus 79 ~~eea~-------~KLcKV~~k~~~~~G~~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~ 151 (213)
T 3kbg_A 79 TKERAS-------MKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGS 151 (213)
T ss_dssp CTTGGG-------EEEEEEEEEEEEGGGEEEEEETTSCEEEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSST
T ss_pred ChhHcc-------ceEEEEEEEEEecCCeeEEEecCccEEEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceeeCCCCcce
Q 024108 195 NRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGI 251 (272)
Q Consensus 195 n~G~vG~I~~i~~~~~s-~~~V~i~d~~g~~F~T~~~~vfvIGk~~kp~Islp~~~gi 251 (272)
|+|++|+|++|++++|| +|+||++ ++|+|+++||||||+ ++|||.++++.=|
T Consensus 152 n~GriG~I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~~p~~~~ 204 (213)
T 3kbg_A 152 HVNQTGTISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVLSPEEVI 204 (213)
T ss_dssp TTTCEEEEEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-------
T ss_pred cceEEEEEEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEeChHHcc
Confidence 99999999999999999 5999997 679999999999998 7999987766544
No 6
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.00064 Score=50.39 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=38.7
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcc--eeEEEecc
Q 024108 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGF--MDVVSIPK 94 (272)
Q Consensus 52 LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~--mDVIsI~k 94 (272)
+++|.|.++|++.+++|.|.|||++++.+.|.|-. -|.|++..
T Consensus 17 ~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 17 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp TTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred hCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 69999999999999999999999999999999876 67887543
No 7
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=96.79 E-value=0.00051 Score=51.05 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=48.2
Q ss_pred chHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEE
Q 024108 42 LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRL 101 (272)
Q Consensus 42 lPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRv 101 (272)
+-|--+|.+. +++.+.+||++.+.+|.|+|||++.++..+.+---|+|++. ++.+.+
T Consensus 21 ~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~--~~~~~~ 77 (79)
T 1p9k_A 21 VELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA--GHSVQV 77 (79)
T ss_dssp CCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET--TEEEEE
T ss_pred chHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEEC--CEEEEE
Confidence 6788888875 89889999999999999999999999998888777999994 454443
No 8
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.09 E-value=0.0026 Score=55.24 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=40.4
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eEEEeccC
Q 024108 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM--DVVSIPKT 95 (272)
Q Consensus 52 LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~m--DVIsI~kt 95 (272)
+++|.|.++|++.|.+|.|.|||.+++++.|.|-.- |+|++...
T Consensus 112 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~ 157 (180)
T 3j20_D 112 KGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYART 157 (180)
T ss_dssp HTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSC
T ss_pred CcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCC
Confidence 589999999999999999999999999999999886 99999653
No 9
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=95.86 E-value=0.0086 Score=50.43 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=41.5
Q ss_pred HHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 024108 44 LILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (272)
Q Consensus 44 L~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~k 94 (272)
|--+|.. +++|.+.++|++.+.+|.|.|||++++++.|.+---|+|++..
T Consensus 53 LD~~L~~-~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 53 LDNLVYR-LGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHHHH-TTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHHHH-cCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 3334443 4688999999999999999999999999999887779999954
No 10
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=95.82 E-value=0.0091 Score=52.56 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=39.3
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 024108 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (272)
Q Consensus 52 LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~k 94 (272)
+++|.|..+|++.+.+|.|.|||++++++.|.|---|+|++..
T Consensus 98 ~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 98 LGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp TTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECS
T ss_pred cCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEcc
Confidence 4678899999999999999999999999999998889999964
No 11
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=95.23 E-value=0.018 Score=50.60 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=38.7
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 024108 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (272)
Q Consensus 52 LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~k 94 (272)
+++|.+.++|++++.+|.|+|||+++++..|.|---|+|++..
T Consensus 108 ~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 108 LGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp TTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred hcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcC
Confidence 4578899999999999999999999999999987789999954
No 12
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=95.08 E-value=0.0063 Score=53.67 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=39.4
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eEEEeccC
Q 024108 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM--DVVSIPKT 95 (272)
Q Consensus 52 LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~m--DVIsI~kt 95 (272)
+++|.|..+|++.+.+|.|.|||++++++.|.|-.= |.|++..+
T Consensus 116 ~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~ 161 (197)
T 3u5c_J 116 LGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPT 161 (197)
T ss_dssp SSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSS
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCC
Confidence 689999999999999999999999999999998775 67888654
No 13
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=95.01 E-value=0.01 Score=51.44 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=37.6
Q ss_pred hhcccccHHHHHHHHhCceEEECCEEeccccCCCccee--EEEec
Q 024108 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD--VVSIP 93 (272)
Q Consensus 51 ~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mD--VIsI~ 93 (272)
.+++|.|.++|+..+.+|.|.|||++++++.|.|-.-| .|++.
T Consensus 115 ~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~ 159 (181)
T 2xzm_D 115 KLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFA 159 (181)
T ss_dssp HTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECT
T ss_pred hccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEe
Confidence 36899999999999999999999999999999986554 67763
No 14
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=95.01 E-value=0.059 Score=44.03 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=48.2
Q ss_pred cccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEE
Q 024108 39 RECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRL 101 (272)
Q Consensus 39 ~~slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRv 101 (272)
.+++-|--||... .+..+...|+.++.+|.|.|||++. ...+.|-.-|+|+|...++.|.+
T Consensus 6 ~~~~RLDk~L~~~-~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~ 66 (133)
T 1dm9_A 6 AVEVRLDKWLWAA-RFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTV 66 (133)
T ss_dssp TTCCBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEE
T ss_pred ccchhHHHHHHHC-CCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeE
Confidence 3456777888764 3346999999999999999999986 78888877899999776655543
No 15
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=94.78 E-value=0.043 Score=47.76 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=49.2
Q ss_pred cchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc-----C-CceEEEEEcCCC
Q 024108 41 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK-----T-NENFRLLYDTKG 107 (272)
Q Consensus 41 slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~k-----t-~e~yRvl~d~kg 107 (272)
++-|--+|.... ..+.++|++.+.+|.|+|||+++++..+++---|+|++.. . +++|=++.-+.|
T Consensus 3 ~~RLd~~L~~~~--~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~i~~e~d~~~lvvnKP~G 73 (234)
T 1ksk_A 3 HMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQG 73 (234)
T ss_dssp CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTEEECCCCCCCEEEEEECTT
T ss_pred cccHHHHHHHcC--CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeCeEeecCCCCEEEEEECCCC
Confidence 456777887753 6789999999999999999999987777776569999853 2 445555555555
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=94.53 E-value=0.012 Score=52.09 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=39.0
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 024108 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (272)
Q Consensus 52 LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~k 94 (272)
+++|.|.++|++++.+|.|.|||++++++.|.|---|+|+|..
T Consensus 104 ~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 104 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp TSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred hcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecC
Confidence 4678899999999999999999999999988887779999954
No 17
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=94.41 E-value=0.067 Score=40.02 Aligned_cols=46 Identities=30% Similarity=0.422 Sum_probs=35.3
Q ss_pred ecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeece
Q 024108 182 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 231 (272)
Q Consensus 182 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~ 231 (272)
|++|+.+-|++|+|.|+.|.|..++.. -++.+-|...+++.-...+
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d----~v~v~SD~t~~Ei~V~~~d 63 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEEN----FVILFSDLTMHELKVLPRD 63 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSS----CEEEEESSSCSEEEECTTS
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCC----EEEEEeCCCCCEEEEEhHH
Confidence 789999999999999999999999631 2444666777776655444
No 18
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=94.39 E-value=0.091 Score=42.99 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=32.1
Q ss_pred CCeEEEecCCCceeeEEeecCCcEEEEECCCcceeEEEEEeEEE
Q 024108 164 NDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREK 207 (272)
Q Consensus 164 ~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~ 207 (272)
++.| .+....+--.+| ..|+.+||+.|.+.|.+|++.++..
T Consensus 56 g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 56 GDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4554 444445555666 8999999999999999999999954
No 19
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=94.11 E-value=0.053 Score=47.59 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=50.2
Q ss_pred chHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc-----CCce-EEEEEcCCCc
Q 024108 42 LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK-----TNEN-FRLLYDTKGR 108 (272)
Q Consensus 42 lPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~k-----t~e~-yRvl~d~kgr 108 (272)
+-|--+|.... ..+.+++++.+.+|.|+|||+++++..+++---|+|+++. .+++ |-++.-+.|-
T Consensus 3 ~RLd~~L~~~~--~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~i~~ed~~~~lvvnKP~G~ 73 (243)
T 1vio_A 3 LRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGC 73 (243)
T ss_dssp EEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTEECCSSCCCCEEEEEECTTC
T ss_pred ccHHHHHHHcC--CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEeccccccCCCCEEEEEECCCCC
Confidence 45667787763 6789999999999999999999988888887778998853 3455 6666666553
No 20
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=93.42 E-value=0.11 Score=47.55 Aligned_cols=67 Identities=16% Similarity=0.093 Sum_probs=53.9
Q ss_pred ccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc--------CCceEEEEEcCCCce
Q 024108 40 ECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK--------TNENFRLLYDTKGRF 109 (272)
Q Consensus 40 ~slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~k--------t~e~yRvl~d~kgrf 109 (272)
+++-|--+|.+. +++ +.++|++.+.+|.|.|||+++ +..+.+---|+|++.. .+++|-++.-+.|-.
T Consensus 5 ~g~RLdk~La~~-g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~~~ed~~~lvvnKP~G~~ 79 (290)
T 3dh3_A 5 SSVRLNKYISES-GIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIV 79 (290)
T ss_dssp CCEEHHHHHHTT-TSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTTCB
T ss_pred cchHHHHHHHhC-CCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccccccccceEEEEECCCccc
Confidence 467788889886 555 999999999999999999998 7888776669999852 356777887777744
No 21
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=93.18 E-value=0.023 Score=42.78 Aligned_cols=53 Identities=8% Similarity=-0.043 Sum_probs=38.5
Q ss_pred HHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEE
Q 024108 46 LILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFR 100 (272)
Q Consensus 46 i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yR 100 (272)
-+|.. ++++.+...|++++.+|.|+|||+++ +..|.+---|+|+|...++.+.
T Consensus 5 ~~L~~-~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~ 57 (92)
T 2k6p_A 5 KFLQS-VGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEE 57 (92)
T ss_dssp HHSTT-TTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEE
T ss_pred HHHHH-CCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEE
Confidence 34544 24444555699999999999999997 6778886669999965554443
No 22
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=91.56 E-value=0.069 Score=48.90 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=0.0
Q ss_pred ccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 024108 40 ECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 93 (272)
Q Consensus 40 ~slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~ 93 (272)
.++.|--+|...+ ...+.++|++.+.+|.|+|||+++++..+.+---|+|++.
T Consensus 15 ~g~RLd~~L~~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 15 LGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp ------------------------------------------------------
T ss_pred CCchHHHHHHhhc-cccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 3456777777654 3568899999999999999999978888888777999985
No 23
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=91.32 E-value=0.17 Score=43.32 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=54.4
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEE-----------Eec---cCCceEEEEEcCCCc
Q 024108 43 PLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVV-----------SIP---KTNENFRLLYDTKGR 108 (272)
Q Consensus 43 PL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVI-----------sI~---kt~e~yRvl~d~kgr 108 (272)
+|+=+|- ..++|.+.+||++.|.+|-|+|||....|..-|.|+||-- .+. -.+..|-+|---|.+
T Consensus 51 ~ivdlLv-~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~~~~~~~tpi~d~~~~it~~dli~g~~liLRkGKK~ 129 (164)
T 2ktl_A 51 TFSKVLW-SAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASKTQEFIIDGDLLILKLGKWK 129 (164)
T ss_dssp SHHHHHH-HHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSSCSSSCCCCCCCCSHHHHHHHTTCSSCEEEEESSSC
T ss_pred cHHHHHH-HhCcccCHHHHHHHHHhCCEEECCEecccccccccccccccccccccccccccCHHHhcCCcEEEEEcCCee
Confidence 4444454 3699999999999999999999998888854477777641 112 135677788888888
Q ss_pred eEEEEcChHh
Q 024108 109 FRLHSIRDEE 118 (272)
Q Consensus 109 f~l~~I~~eE 118 (272)
|.+..+..+|
T Consensus 130 ~~lI~~~~de 139 (164)
T 2ktl_A 130 MKLVSIVSDE 139 (164)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEEeccH
Confidence 8877765444
No 24
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=90.99 E-value=0.0064 Score=53.53 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=38.7
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 024108 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 93 (272)
Q Consensus 52 LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~ 93 (272)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.=|++.|.
T Consensus 118 ~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 118 AGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp CCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSC
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEE
Confidence 589999999999999999999999999999999888887774
No 25
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=90.62 E-value=0.5 Score=45.71 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=49.4
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEc
Q 024108 43 PLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI 114 (272)
Q Consensus 43 PL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I 114 (272)
+++=+|.. .++|.+..||++.+.||-|+|||..++|..+.+.--|.+ +..|-+|---|.+|.+..+
T Consensus 357 ~~~~ll~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~-----~~~~~~l~~GKk~~~~v~~ 422 (432)
T 2jan_A 357 GIVDLLVA-SGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFL-----HGRWLVLRRGKRSIAGVER 422 (432)
T ss_dssp SHHHHHHH-HTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSB-----TTTEEEEESSSSCEEEEEE
T ss_pred hHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhcc-----CCcEEEEEeCCeeEEEEEE
Confidence 56666764 799999999999999999999999999999877544332 2244455555666655554
No 26
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=89.96 E-value=0.17 Score=46.27 Aligned_cols=52 Identities=6% Similarity=-0.190 Sum_probs=42.7
Q ss_pred chHHHHHHhhhcccccHHHHHHHHhCceEEECC-E-EeccccCCCcceeEEEecc
Q 024108 42 LPLILILRNRLKYALTYREVIAILMQRHVLVDA-K-VRTDKTYPAGFMDVVSIPK 94 (272)
Q Consensus 42 lPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDG-k-vr~D~k~PvG~mDVIsI~k 94 (272)
+-|-.+|-. .+++.+..+|++.|++|.|.||| + +.+++.+.|---|.|++..
T Consensus 7 ~RLD~~L~~-~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 7 ERVDVLAYK-QGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp EEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred hhHHHHHHH-cCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 345566655 37889999999999999999999 8 8888888877779999963
No 27
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=88.53 E-value=0.57 Score=45.20 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=38.3
Q ss_pred cchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCc
Q 024108 41 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAG 85 (272)
Q Consensus 41 slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG 85 (272)
.++++=+|.. .++|.+..||++.+.||-|+|||..++|..+-+.
T Consensus 368 ~~~~~~~l~~-~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~ 411 (432)
T 1h3f_A 368 RIWVARLFTL-AGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVD 411 (432)
T ss_dssp EEEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEE
T ss_pred cCcHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEecCccceec
Confidence 4567777775 6999999999999999999999999999987554
No 28
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=84.96 E-value=0.18 Score=48.51 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred cchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeE
Q 024108 41 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDV 89 (272)
Q Consensus 41 slPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDV 89 (272)
.++|.=+|.. .++|.+..|||+.|.+|-|+|||.+.+|..+.+.--|.
T Consensus 352 ~i~l~~lL~~-agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl 399 (420)
T 1jil_A 352 TTNIVEVLIE-TGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDK 399 (420)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHH-cCCccCHHHHHHHHHhCCEEECCEEecccccccCcccc
Confidence 4567777764 69999999999999999999999999999876654443
No 29
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=83.88 E-value=1.3 Score=36.23 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=41.0
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcC-----CCCeEeE--eeceEEEEc
Q 024108 178 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFAT--RLGNVFTIG 236 (272)
Q Consensus 178 ~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~-----~g~~F~T--~~~~vfvIG 236 (272)
..+++..|+.++|+.|..-|..|+|..+.. ..+.|+|+.- +|.+++- ..+||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457888999999999999999999999853 2345666554 3445443 357887765
No 30
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=83.83 E-value=1.5 Score=36.23 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=39.1
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 024108 178 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 236 (272)
Q Consensus 178 ~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d-----~~g~~F~--T~~~~vfvIG 236 (272)
-.++...|+.++|+.|+.-|..|+|..+... .+.|+|+. .+|.+.+ .-.+||+++-
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 108 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRL---KFAVQVDKVTKEKVNGASVPINLHPSKLVITK 108 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGG---GTEEEEETCEEECSSSCEEECCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECC---CCEEEEeCeEEECCCCcEEEcccchHHEEEEc
Confidence 3577888999999999999999999998543 23555553 4554433 3345666554
No 31
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.65 E-value=1.8 Score=35.36 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=38.0
Q ss_pred EEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEE-----cCCCCeEe--EeeceEEEEc
Q 024108 179 FIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ-----DALGHEFA--TRLGNVFTIG 236 (272)
Q Consensus 179 ~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~-----d~~g~~F~--T~~~~vfvIG 236 (272)
.+++..|+.+.|+.|+.-|..|+|..+... .+.|+|+ ..+|.+.+ ...+||+++-
T Consensus 43 ~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VEgvn~~k~~G~~~e~pIh~SNV~l~~ 104 (121)
T 3j21_U 43 NLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVEGATLRKTNGTEVFYPIHPSNVMIIE 104 (121)
T ss_dssp EEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEeCeEEEecCCcEEEcccCHHHeEEEc
Confidence 578889999999999999999999998642 2445554 34453322 2335666554
No 32
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=83.47 E-value=1.7 Score=30.07 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=31.4
Q ss_pred EeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 024108 180 IKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 224 (272)
Q Consensus 180 ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~ 224 (272)
+.|++|+.+.|+.|.-.|..|+|.++....+ .-.|.+ +.-|.+
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~-~v~V~v-~~~Gr~ 45 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERG-KVKVMV-TIFGRE 45 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTT-EEEEEE-ESSSSE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCC-EEEEEE-EeCCCE
Confidence 4689999999999999999999999964322 234434 345554
No 33
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=78.80 E-value=2.8 Score=35.51 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=47.0
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEE-----cCCCCeEe--EeeceEEEEccCCCceeeCCCCcc
Q 024108 178 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ-----DALGHEFA--TRLGNVFTIGKGTKPWVSLPKGKG 250 (272)
Q Consensus 178 ~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~-----d~~g~~F~--T~~~~vfvIGk~~kp~Islp~~~g 250 (272)
-.+++..|+.++|+.|+.-|..|+|..+... .+.|+|+ ..+|.+.+ .-.+||+++-- .+ ++
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~------k~--dk- 112 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTKL------KL--DK- 112 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEEC------CC--CS-
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEcc------cC--Ch-
Confidence 3578889999999999999999999998543 2344443 35665433 33467776652 12 22
Q ss_pred eeeehHHHHHH
Q 024108 251 IKLSIIEEARK 261 (272)
Q Consensus 251 i~~~~~e~~~~ 261 (272)
-|..++|.+.+
T Consensus 113 ~R~~~lerk~~ 123 (150)
T 3iz5_Y 113 DRKAILDRKAS 123 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccchh
Confidence 55666666553
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=78.07 E-value=0.44 Score=45.86 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred chHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcc
Q 024108 42 LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGF 86 (272)
Q Consensus 42 lPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~ 86 (272)
++++=+|.. .++|.+..||++.+.||-|+|||..++|..+.+.-
T Consensus 352 ~~~~~~l~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~ 395 (419)
T 2ts1_A 352 VPLVELLVS-AGISPSKRQAREDIQNGAIYVNGERLQDVGAILTA 395 (419)
T ss_dssp ---------------------------------------------
T ss_pred ccHHHHHHH-hCCCCCHHHHHHHHHhCCEEECCEEecCcccccCh
Confidence 456666664 69999999999999999999999999999876643
No 35
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=69.39 E-value=4.1 Score=32.22 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.8
Q ss_pred eecCCcEEEEECCCcceeEEEEEeEEE
Q 024108 181 KFDVGNVVMVTGGRNRGRVGIIKNREK 207 (272)
Q Consensus 181 kf~~G~~~~v~gG~n~G~vG~I~~i~~ 207 (272)
++..|+.++|+.|+.-|..|+|.++..
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 29 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLS 29 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEe
Confidence 456799999999999999999999864
No 36
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=68.60 E-value=3.2 Score=33.24 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=25.5
Q ss_pred EeecCCcEEEEECCCcceeEEEEEeEEEe
Q 024108 180 IKFDVGNVVMVTGGRNRGRVGIIKNREKH 208 (272)
Q Consensus 180 ikf~~G~~~~v~gG~n~G~vG~I~~i~~~ 208 (272)
+++..|+.+.|+.|+.-|..|+|..+...
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 33 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPK 33 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECC
Confidence 46778999999999999999999998653
No 37
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=68.38 E-value=6 Score=32.88 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=38.1
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 024108 178 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 236 (272)
Q Consensus 178 ~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d-----~~g~~F~--T~~~~vfvIG 236 (272)
-.++...|+.++|+.|+.-|..|+|..+... .+.|+|+. .+|.+.+ .-.+||+++-
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 107 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRK---KWAIHVEKISKNKLNGAPYQIPLSASQLVLTK 107 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETT---TTEEEETTCCEEETTTEEECCCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcC---CCEEEEeCeEEEcCCCCEEEcccchHHEEEEc
Confidence 3567888999999999999999999998532 23455433 4554322 3345666555
No 38
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=66.97 E-value=6.4 Score=30.72 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.1
Q ss_pred CcEEEEECCCcceeEEEEEeEEE
Q 024108 185 GNVVMVTGGRNRGRVGIIKNREK 207 (272)
Q Consensus 185 G~~~~v~gG~n~G~vG~I~~i~~ 207 (272)
|+.++|+.|+.-|..|+|.++..
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~ 23 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIR 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEC
Confidence 78999999999999999999864
No 39
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=66.56 E-value=4.2 Score=32.74 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=29.0
Q ss_pred eecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 024108 181 KFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 219 (272)
Q Consensus 181 kf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d 219 (272)
++..|+.+.|+.|+.-|..|+|..+.. ..+.|+++.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~---~~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALP---RDQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEET---TTTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEC---CCCEEEEeC
Confidence 788899999999999999999999853 234555554
No 40
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=64.12 E-value=3.8 Score=34.36 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=38.4
Q ss_pred EEeecCCcEEEEECCCcceeE-EEEEeEEEecCCccEEEEEcC-----CCCeEe--EeeceEEEEc
Q 024108 179 FIKFDVGNVVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDA-----LGHEFA--TRLGNVFTIG 236 (272)
Q Consensus 179 ~ikf~~G~~~~v~gG~n~G~v-G~I~~i~~~~~s~~~V~i~d~-----~g~~F~--T~~~~vfvIG 236 (272)
.+++..|+.+.|+.|..-|.. |+|..+.. ..+.|+|+.- +|.+.+ ...+||+++-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~---k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYR---KKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEET---TTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEEC---CCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 367888999999999999999 99999853 2345555543 343333 2346777665
No 41
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=64.12 E-value=5 Score=33.02 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=27.0
Q ss_pred ecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 024108 182 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHI 217 (272)
Q Consensus 182 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i 217 (272)
.|+|-+|++..|.+.|+.++|++|..+ +.|.|
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~----nrvLV 38 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ----NRILI 38 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT----TEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC----CeEEE
Confidence 478999999999999999999999653 45545
No 42
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.43 E-value=4.6 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=25.5
Q ss_pred EEeecCCcEEEEECCCcceeEEEEEeEE
Q 024108 179 FIKFDVGNVVMVTGGRNRGRVGIIKNRE 206 (272)
Q Consensus 179 ~ikf~~G~~~~v~gG~n~G~vG~I~~i~ 206 (272)
.+.|++|+.+-|+.|.=.|..|+|.+++
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 3568999999999999999999999985
No 43
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=55.70 E-value=27 Score=27.25 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=32.6
Q ss_pred CCceEEEccCCeeeecC-----C-CCcccCCeEEEecCCCceeeEEeecCCcEEEE
Q 024108 141 KGIPYINTYDGRTIRYP-----D-PLIKANDTIKLDLETNKITEFIKFDVGNVVMV 190 (272)
Q Consensus 141 ~g~~ql~~hDGrni~~~-----d-~~ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v 190 (272)
++..-+.+..|+++.++ | ..+++|++|-++-.+..|++..|++.+..+.+
T Consensus 49 ~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~ 104 (109)
T 2wg5_A 49 DGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYG 104 (109)
T ss_dssp TSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC---------
T ss_pred CCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchh
Confidence 45555667778886443 3 36999999999999999999999999877643
No 44
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=54.82 E-value=6.5 Score=32.60 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=23.8
Q ss_pred ecCCcEEEEECCCcceeEEEEEeEEE
Q 024108 182 FDVGNVVMVTGGRNRGRVGIIKNREK 207 (272)
Q Consensus 182 f~~G~~~~v~gG~n~G~vG~I~~i~~ 207 (272)
.++|-+|++..|++.|+..+|++|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD 32 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC
Confidence 47899999999999999999999954
No 45
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=46.67 E-value=12 Score=31.36 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.0
Q ss_pred ecCCcEEEEECCCcceeEEEEEeEEEe
Q 024108 182 FDVGNVVMVTGGRNRGRVGIIKNREKH 208 (272)
Q Consensus 182 f~~G~~~~v~gG~n~G~vG~I~~i~~~ 208 (272)
+++|-.|+|..|+++|+-++|..+-..
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 578999999999999999999988543
No 46
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=46.45 E-value=10 Score=31.50 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=26.6
Q ss_pred ecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 024108 182 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHI 217 (272)
Q Consensus 182 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i 217 (272)
.++|-+|++..|+..|+..+|++|..+ +.|.|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~----~rVLV 46 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ----KKVLI 46 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC----CEEEE
Confidence 468999999999999999999999542 45555
No 47
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.99 E-value=9.1 Score=29.01 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=23.0
Q ss_pred ecCCcEEEEECCCcceeEEEEEeEE
Q 024108 182 FDVGNVVMVTGGRNRGRVGIIKNRE 206 (272)
Q Consensus 182 f~~G~~~~v~gG~n~G~vG~I~~i~ 206 (272)
+++|.+|++..|+..|+..+|.++.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~ii 28 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDII 28 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEc
Confidence 6789999999999999999999873
No 48
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=45.11 E-value=11 Score=29.01 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=33.8
Q ss_pred ecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCC----CCeEeEeeceEEEEc
Q 024108 182 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAL----GHEFATRLGNVFTIG 236 (272)
Q Consensus 182 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~----g~~F~T~~~~vfvIG 236 (272)
+++|-+|++..|++.|+..+|.++.. + +.|.+-|.+ ...-.....++....
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD--~--~~vLV~gp~~~~~~~rk~~n~khl~~T~ 58 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID--D--NFVLVTGPKDITGVKRRRVNILHLEPTD 58 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS--S--SCEEEECCTTTTCCCCEEESCSSCEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC--C--CEEEEECCcccCCcCCEEEchHHEEEee
Confidence 57899999999999999999998832 1 245454432 122344455555544
No 49
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=43.66 E-value=25 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.5
Q ss_pred EEeecCCcEEEEECCCcceeEEEEEeEEEe
Q 024108 179 FIKFDVGNVVMVTGGRNRGRVGIIKNREKH 208 (272)
Q Consensus 179 ~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~ 208 (272)
...|++|+.+-|+.|.=.|..|+|.++...
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYE 154 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETT
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCC
Confidence 347889999999999999999999998643
No 50
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=42.42 E-value=13 Score=30.04 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=26.4
Q ss_pred EeecCCcEEEEECCCcceeEEEEEeEEEe
Q 024108 180 IKFDVGNVVMVTGGRNRGRVGIIKNREKH 208 (272)
Q Consensus 180 ikf~~G~~~~v~gG~n~G~vG~I~~i~~~ 208 (272)
..|++|+.+-|+.|.-.|..|+|.++...
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 56899999999999999999999999754
No 51
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=38.61 E-value=52 Score=25.64 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=18.4
Q ss_pred CccEEEEEcCCCCeEeEeeceEEEEcc
Q 024108 211 SFETIHIQDALGHEFATRLGNVFTIGK 237 (272)
Q Consensus 211 s~~~V~i~d~~g~~F~T~~~~vfvIGk 237 (272)
...++.|+.++|.+..+-.+.-|...+
T Consensus 53 ~~~~~~i~t~~G~~i~~T~~H~~~t~~ 79 (139)
T 2in0_A 53 TRDVIGLRIAGGAILWATPDHKVLTEY 79 (139)
T ss_dssp EEEEEEEEETTSCEEEECTTCEEEETT
T ss_pred CcEEEEEEeCCCCEEEecCCCeEEecC
Confidence 346777777788777777677666543
No 52
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.43 E-value=53 Score=29.80 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=35.6
Q ss_pred CCcccCCeEEEecCCCceeeEEeecCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 024108 159 PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 224 (272)
Q Consensus 159 ~~ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~ 224 (272)
..+++|++|.++ ++..|++..+|+. +|.+-++.|+- .+ .+.+.|.+..|++
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l--~d-~~R~lV~~~~~ee 183 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL--AD-GHRALVVGHADEE 183 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC--TT-SSEEEEECSSSCE
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe--cC-CCEEEEecCCCce
Confidence 479999999996 8999999999987 46677766663 11 1234445555544
No 53
>2laq_A Accessory gland-specific peptide 70A; hydroxiproline rich, signaling protein; HET: HYP; NMR {Drosophila melanogaster}
Probab=36.36 E-value=17 Score=23.69 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=13.0
Q ss_pred ceecccccceeccCCCCCCCC
Q 024108 17 HWMLDKLGGAFAPKPSSGPHK 37 (272)
Q Consensus 17 ~W~i~kk~~~~a~kpspGPH~ 37 (272)
+|+..|+..+| |-|||.+
T Consensus 2 ~wp~~~~~~~~---~ip~p~~ 19 (36)
T 2laq_A 2 EWPWNRKPTKF---PIPSPNP 19 (36)
T ss_dssp CSCCCSCCCSC---SSSSCST
T ss_pred CCcccCcCCCC---cCCCCcc
Confidence 69999999888 3444444
No 54
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=34.20 E-value=73 Score=28.44 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=25.9
Q ss_pred ccchHHHHHHhhhcccccHHHHHHHHhCc
Q 024108 40 ECLPLILILRNRLKYALTYREVIAILMQR 68 (272)
Q Consensus 40 ~slPL~i~LRd~LkyA~t~rEak~Il~~g 68 (272)
..+|...++|..|. +.|.+||..+|.+-
T Consensus 177 ~g~~~~~~~r~vL~-~~tv~eav~~l~~~ 204 (357)
T 2x1d_A 177 TGVPSHIALRIALE-STSPSQAYDRIVEQ 204 (357)
T ss_dssp TSBCHHHHHHHHHT-CSSHHHHHHHHHHT
T ss_pred CCccHhHHHHHHhc-CCCHHHHHHHHHHh
Confidence 57999999999999 99999999999854
No 55
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=31.00 E-value=1.4e+02 Score=21.81 Aligned_cols=54 Identities=24% Similarity=0.536 Sum_probs=34.7
Q ss_pred cccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 024108 55 ALTYREVIAILMQRHVLVDAK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 112 (272)
Q Consensus 55 A~t~rEak~Il~~g~V~VDGk--vr~D~k~PvG~mDVIsI~kt~--e~yRvl~d~kgrf~l~ 112 (272)
..+..||..+|.++. .||- ||.....|--+ ++|+-..+ .|||+..+..|.|.+-
T Consensus 9 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 9 CLTKRECEALLLKGG--VDGNFLIRDSESVPGAL--CLCVSFKKLVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp SCCHHHHHHHHHTTC--STTEEEEEECSSSTTCE--EEEEECSSSEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHhhcC--CCceEEEEeCCCCCCCE--EEEEEECCEEEEEEEEECCCCeEEEe
Confidence 347889999998633 4665 55544444223 67764433 5888888778887653
No 56
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=29.44 E-value=1.3e+02 Score=26.48 Aligned_cols=46 Identities=7% Similarity=0.214 Sum_probs=31.8
Q ss_pred eEEEeeCCce-----EEEccCCeeeecCCCCcccCCeEEEecCCCceeeEEeec
Q 024108 135 SVQFGQKGIP-----YINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFD 183 (272)
Q Consensus 135 ~k~~~~~g~~-----ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~~~ikf~ 183 (272)
.+.++.+|.| .+.+.||+ + |. +....++..+||..+++++..|++.
T Consensus 141 ~I~Vg~~~~p~~~~nele~~dg~-l-yv-n~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYINGE-V-WA-NIWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EEECEETTEECCCEEEEEEETTE-E-EE-EETTSSEEEEEETTTCCEEEEEECH
T ss_pred EEEECCCCcccccceeEEEECCE-E-EE-ecCCCCeEEEEECCCCcEEEEEECC
Confidence 3445555555 34455885 2 32 2356788999999999999999985
No 57
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=26.37 E-value=1.3e+02 Score=22.17 Aligned_cols=54 Identities=11% Similarity=0.277 Sum_probs=33.8
Q ss_pred cccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 024108 55 ALTYREVIAILMQRHVLVDAK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 112 (272)
Q Consensus 55 A~t~rEak~Il~~g~V~VDGk--vr~D~k~PvG~mDVIsI~kt~--e~yRvl~d~kgrf~l~ 112 (272)
..+..||..+|.+.. .||- ||.....|-.+ ++|+--.+ .|||+..+..|.|.+.
T Consensus 10 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (104)
T 1d4t_A 10 KISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (104)
T ss_dssp SCCHHHHHHHHHHHC--CTTEEEEEECSSSTTCE--EEEEEETTEEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHHhcC--CCCEEEEeeCCCCCCCE--EEEEEECCeEEEEEEEECCCCeEEEe
Confidence 347889999997432 3554 45443344323 66664333 5888888888888654
No 58
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=24.89 E-value=2.4e+02 Score=23.25 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=40.4
Q ss_pred CCCcccCCeEEEecCCCceeeEEeecCCcEEEEECCCcceeEEEEEeEEEec-CCccEEEEEcCCCCeEeEeeceEEEEc
Q 024108 158 DPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALGHEFATRLGNVFTIG 236 (272)
Q Consensus 158 d~~ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~-~s~~~V~i~d~~g~~F~T~~~~vfvIG 236 (272)
+.+++.||.|+-+=-++.-..=+ -||+|.+++... +.+..+.++=+.. -..+++|+||-
T Consensus 106 ~~~i~~GD~vvTSGl~g~fP~Gi-----------------pVG~V~~v~~~~~~~~~~i~v~p~ad---~~~l~~V~Vi~ 165 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNFNVADI-----------------PVGEVVATTHSTDYLTREVTVKLSAD---THNVDVIELVG 165 (172)
T ss_dssp CCCCCTTCEEEEECCSSSCCEEE-----------------EEEEEEEEESTTCSSCCEEEEEESCC---CTTCCEEEEEE
T ss_pred CCCCCCCCEEEECCCCCcCCCCC-----------------EEEEEEEEecCCCCcEEEEEEEECCC---cccCeEEEEEe
Confidence 45688888887775554322222 389999998766 4567777775432 34678999998
Q ss_pred c
Q 024108 237 K 237 (272)
Q Consensus 237 k 237 (272)
.
T Consensus 166 ~ 166 (172)
T 2qf4_A 166 N 166 (172)
T ss_dssp E
T ss_pred C
Confidence 5
No 59
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=23.80 E-value=1.3e+02 Score=23.33 Aligned_cols=53 Identities=11% Similarity=0.285 Sum_probs=34.3
Q ss_pred ccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 024108 56 LTYREVIAILMQRHVLVDAK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 112 (272)
Q Consensus 56 ~t~rEak~Il~~g~V~VDGk--vr~D~k~PvG~mDVIsI~kt~--e~yRvl~d~kgrf~l~ 112 (272)
.+..||.++|.+.. .||- ||.....|-.+ ++|+-..+ .|||+..+..|.|.+.
T Consensus 11 isR~eAe~lL~~~~--~~G~FLVR~S~~~~g~y--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (128)
T 1ka6_A 11 ISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (128)
T ss_dssp CCHHHHHHHHHHHC--CTTCEEEEECSSSTTCE--EEEEESSSCEEEEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHhcCC--CCCEEEEeecCCCCCCE--EEEEEeCCEEEEEEEEECCCCeEEEe
Confidence 47889999997432 3553 44443344333 77775433 5899998888888765
No 60
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=22.86 E-value=2.1e+02 Score=24.84 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=53.0
Q ss_pred cCCCCCCCCCccc--------chHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEE
Q 024108 29 PKPSSGPHKSREC--------LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFR 100 (272)
Q Consensus 29 ~kpspGPH~~~~s--------lPL~i~LRd~LkyA~t~rEak~Il~~g~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yR 100 (272)
..|.+-|++.+.- +|+-..|...=.+....--++.|++-..++..|.+.-+..|..| |+|.|
T Consensus 45 ~~~~~~~~~~~k~~l~~wI~~~P~E~aL~~~g~VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~G--D~V~V-------- 114 (195)
T 3zv0_C 45 YTPIPAGSSPLKRDLKSYISSGPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELY--DEIVL-------- 114 (195)
T ss_dssp --------CCCCCCHHHHBCSSCGGGGGTTSEEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTT--CEEEE--------
T ss_pred EEecCCCCChHHHHHHHHHhhccHHHHhccCCeEEECHHHHHHHhcCCCccCCCcEecCCCcCCC--CEEEE--------
Confidence 4456667777655 77777777655555555555666654478888888887777776 56655
Q ss_pred EEEcCCCceE---EEEcChHhHhhhhccceeeEEEEEeEEEe
Q 024108 101 LLYDTKGRFR---LHSIRDEEAKALILLFQFKLCKVRSVQFG 139 (272)
Q Consensus 101 vl~d~kgrf~---l~~I~~eEa~~~~~~~~~KLcKV~~k~~~ 139 (272)
+|.+|++. ....+++|..+ .=.=+.++++.+.+-
T Consensus 115 --~~~~G~~IAvG~a~~sS~Ei~~---~~kG~aVkv~rVimd 151 (195)
T 3zv0_C 115 --ITTKGEAIAVAIAQMSTVDLAS---CDHGVVASVKRCIME 151 (195)
T ss_dssp --ECTTCCEEEEEEESSCHHHHHH---CSSSEEEEEEEECBC
T ss_pred --EcCCCCEEEEEEEcCCHHHHhh---cCCcEEEEEEEEEeC
Confidence 35556643 33456776541 001246666665543
No 61
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=22.54 E-value=50 Score=29.80 Aligned_cols=30 Identities=17% Similarity=-0.041 Sum_probs=21.9
Q ss_pred CcccchHHHHHHhhhcccccHHHHHHHHhC
Q 024108 38 SRECLPLILILRNRLKYALTYREVIAILMQ 67 (272)
Q Consensus 38 ~~~slPL~i~LRd~LkyA~t~rEak~Il~~ 67 (272)
.+...|...++|..|.++.|..||..+|.+
T Consensus 103 ~~~g~p~~~~~r~iL~~~aTv~EAv~~L~~ 132 (299)
T 3gvz_A 103 LRADSARHGVLTRLLRDYGSLDEVASAADK 132 (299)
T ss_dssp TC------CCHHHHHHHCCSHHHHHHTHHH
T ss_pred ccCCCCHhHHHHHHHhcCCCHHHHHHHHHh
Confidence 445669999999999999999999999984
No 62
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=21.85 E-value=2.7e+02 Score=21.72 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=50.2
Q ss_pred ceEEECCEEeccccCCCcceeEEEeccCCceEEEE-EcCCCceEEEEcC-hHhHh--hhhccceeeEEEEEeEEEeeCCc
Q 024108 68 RHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIR-DEEAK--ALILLFQFKLCKVRSVQFGQKGI 143 (272)
Q Consensus 68 g~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl-~d~kgrf~l~~I~-~eEa~--~~~~~~~~KLcKV~~k~~~~~g~ 143 (272)
+...+||...+-..+ ||. |.++.....++.+. -|..|.+....-. .+++. +.-.+=.=.++||.+.-..-+|.
T Consensus 27 ~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~ 103 (136)
T 4gop_B 27 AEFILDGAELGQLTF-VAV--VRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNR 103 (136)
T ss_dssp CCCBSSSSBCCEEEE-EEE--EEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTE
T ss_pred CcEEECCEEEEEEEE-EEE--EEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCE
Confidence 567888877766654 455 56666655555543 4667877665433 23210 00011113789999988888999
Q ss_pred eEEEccCCeee
Q 024108 144 PYINTYDGRTI 154 (272)
Q Consensus 144 ~ql~~hDGrni 154 (272)
+||+.+.=|.+
T Consensus 104 ~qi~~~~ir~v 114 (136)
T 4gop_B 104 RSISSGHMRPV 114 (136)
T ss_dssp EEEEESEEEEC
T ss_pred EEEEEEEEEEC
Confidence 99988654444
No 63
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=21.43 E-value=53 Score=27.50 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=40.8
Q ss_pred ccchHHHHHHhhhcccccHHHHHHHHhCc-----eEEECCEEeccccCCCcc---eeEEEeccCC
Q 024108 40 ECLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGF---MDVVSIPKTN 96 (272)
Q Consensus 40 ~slPL~i~LRd~LkyA~t~rEak~Il~~g-----~V~VDGkvr~D~k~PvG~---mDVIsI~kt~ 96 (272)
...+|+=+||+.|++-.+ |.=+.+| .|+|||+++.---.|+.- ++|++|+-.+
T Consensus 21 p~~tLLd~LR~~lgltgt----k~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~ 81 (160)
T 3hrd_D 21 PNKRLLDLLREDFGLTSV----KEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVA 81 (160)
T ss_dssp SSSBHHHHHHTTSCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTS
T ss_pred CCCCHHHHHHHhcCCCcc----ccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCC
Confidence 367899999998876433 3335555 899999999999999865 5789997654
No 64
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=21.39 E-value=56 Score=24.83 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.5
Q ss_pred eecCCCCcccCCeEEEe
Q 024108 154 IRYPDPLIKANDTIKLD 170 (272)
Q Consensus 154 i~~~d~~ik~~Dtv~i~ 170 (272)
||..|.+|++||.|.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 46678889999988764
No 65
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.05 E-value=1.7e+02 Score=25.69 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=39.7
Q ss_pred CCCcccCCeEEEecCCCceeeEEeecCCcEEEEECCCcceeEEEEEeEEEec-CCccEEEEEcCCCCeEeEeeceEEEEc
Q 024108 158 DPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALGHEFATRLGNVFTIG 236 (272)
Q Consensus 158 d~~ik~~Dtv~i~l~~~kI~~~ikf~~G~~~~v~gG~n~G~vG~I~~i~~~~-~s~~~V~i~d~~g~~F~T~~~~vfvIG 236 (272)
+.+++.||.|+-+=-++ .|-.|= -||+|.+++... +.+-.+.++=+.. -..+++|+||-
T Consensus 167 ~~~i~~GD~VvTSGl~g------ifP~Gi-----------pVG~V~~V~~~~~~~~~~i~v~P~ad---~~~l~~V~Vi~ 226 (255)
T 2j5u_A 167 DMKFKKGQKVVTSGLGG------KFPAGI-----------FIGTIEKVETDKMGLSQTAFIKPGAD---MYDLNHVTVLK 226 (255)
T ss_dssp TSCCCTTCEEEECCTTS------SSCTTC-----------EEEEEEEEEECTTSSEEEEEEEESSC---CSSCCEEEEEE
T ss_pred CCCCCCCCEEEECCCCC------cCCCCC-----------EEEEEEEEeeCCCCceEEEEEEECCC---cccCeEEEEEe
Confidence 44677777776654433 233332 489999998876 4567777875432 35678999998
Q ss_pred c
Q 024108 237 K 237 (272)
Q Consensus 237 k 237 (272)
.
T Consensus 227 ~ 227 (255)
T 2j5u_A 227 R 227 (255)
T ss_dssp E
T ss_pred c
Confidence 6
Done!