Query         024109
Match_columns 272
No_of_seqs    117 out of 374
Neff          5.4 
Searched_HMMs 46136
Date          Fri Mar 29 09:02:34 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024109hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG3106 ER lumen protein retai 100.0 8.8E-84 1.9E-88  560.9  15.5  211   45-269     1-212 (212)
  2 COG5196 ERD2 ER lumen protein  100.0 2.1E-70 4.5E-75  470.4  16.8  211   46-269     2-214 (214)
  3 PF00810 ER_lumen_recept:  ER l 100.0 4.3E-55 9.3E-60  371.0  13.1  144   72-216     1-147 (147)
  4 TIGR00951 2A43 Lysosomal Cysti  96.2    0.48   1E-05   42.9  16.6  137   56-194    15-171 (220)
  5 KOG3211 Predicted endoplasmic   95.8    0.15 3.3E-06   46.2  11.6  172   64-255    50-224 (230)
  6 PF04193 PQ-loop:  PQ loop repe  93.5    0.41 8.9E-06   34.0   6.7   54  162-215     2-55  (61)
  7 PF04193 PQ-loop:  PQ loop repe  92.2    0.23   5E-06   35.3   3.9   45   49-93      6-50  (61)
  8 smart00679 CTNS Repeated motif  84.2    0.73 1.6E-05   28.6   1.7   22   64-85      7-28  (32)
  9 PHA02246 hypothetical protein   75.1      27 0.00059   30.7   8.9  153   63-247    23-179 (192)
 10 smart00679 CTNS Repeated motif  58.6     8.7 0.00019   23.6   2.0   26  175-200     1-26  (32)
 11 TIGR00951 2A43 Lysosomal Cysti  51.8      57  0.0012   29.5   6.9   39  172-210    14-52  (220)
 12 KOG2913 Predicted membrane pro  47.8 2.1E+02  0.0047   26.7  10.2   44  168-211   172-215 (260)
 13 KOG1623 Multitransmembrane pro  42.5 2.9E+02  0.0062   25.8  14.2  181   48-247     6-204 (243)
 14 PTZ00154 40S ribosomal protein  38.1      23 0.00049   30.1   2.0   27   49-82     49-75  (134)
 15 COG4095 Uncharacterized conser  35.2 1.6E+02  0.0035   23.4   6.2   48  167-214    10-57  (89)
 16 COG4095 Uncharacterized conser  34.1 1.6E+02  0.0036   23.4   6.1   39   51-89     11-49  (89)
 17 PF09586 YfhO:  Bacterial membr  29.7 6.3E+02   0.014   26.7  11.5   60   13-74    109-169 (843)
 18 PF02790 COX2_TM:  Cytochrome C  28.9      67  0.0015   23.7   3.1   42  113-154    38-80  (84)
 19 KOG2489 Transmembrane protein   26.1      24 0.00052   36.2   0.2   54  138-191   440-498 (592)
 20 PF06363 Picorna_P3A:  Picornav  21.7 1.3E+02  0.0029   24.2   3.6   21   50-70     74-94  (100)
 21 KOG0187 40S ribosomal protein   21.1      75  0.0016   26.9   2.1   27   49-82     49-75  (134)

No 1  
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00  E-value=8.8e-84  Score=560.94  Aligned_cols=211  Identities=45%  Similarity=0.791  Sum_probs=203.9

Q ss_pred             ChhHHHHhhHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHhhhhccee-eehhHHHHHHHHHHHHHHHHHHHhhc
Q 024109           45 HDNLFVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFV-MEYDIHTLLDLATLATTLWVIYMIRF  123 (272)
Q Consensus        45 ~~~~~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~Ly~lVf~~Rl~~~~~-~~y~~~~~~k~~~l~~s~~iiyli~~  123 (272)
                      +|.||++||++|++|+++|++||+|+|||+|||+|||+|||+||++||+|.|. .++++|++||++++++|.+++|+|++
T Consensus         1 mn~fr~~gd~~H~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~   80 (212)
T KOG3106|consen    1 MNNFRFAGDLSHLAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRF   80 (212)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999886 56778999999999999999999999


Q ss_pred             ccccccccccccchhhhhHHHHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHH
Q 024109          124 NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGV  203 (272)
Q Consensus       124 kyk~Tyd~~~Dtf~~~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqktg~ve~lTshYv~~LG~  203 (272)
                      |+|+|||+|+|||+++|+++||+++|+++||+.   .+.|++||||+|||||||||||+|+||+||+|++|+||+||||+
T Consensus        81 k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~---t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~  157 (212)
T KOG3106|consen   81 KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSF---TILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGL  157 (212)
T ss_pred             HHHHHHhcccCceeEEEEehhheeeeeeecCCc---cHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHH
Confidence            999999999999999999999999999999984   48999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccchhhccCCCcchHHHHHHHHHHHHHhhhhhhhhhhhcCCceeeecCC
Q 024109          204 ARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS  269 (272)
Q Consensus       204 yR~lyl~nWi~ry~~~~~~~~~~~g~g~~~~~~ii~givQt~ly~DFfy~Y~~~v~~G~~~~~LP~  269 (272)
                      ||++|++|||+|+.+|+          +||++++++|+|||++|+||||+|++++++|++ ++||+
T Consensus       158 yR~ly~~~WI~r~~~e~----------~~~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~-~~LP~  212 (212)
T KOG3106|consen  158 YRALYIANWIYRYVTED----------FWDPIAIVAGIVQTVLYADFFYLYVTKVLQGKK-LKLPA  212 (212)
T ss_pred             HHHHHHHHHHHHHHhhc----------cccchHHHHHHHHHHHHHhHHHHHHHHHHcCCc-CCCCC
Confidence            99999999999998873          799999999999999999999999999999999 99995


No 2  
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00  E-value=2.1e-70  Score=470.36  Aligned_cols=211  Identities=31%  Similarity=0.583  Sum_probs=196.0

Q ss_pred             hhHHHHhhHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHhhhhcceeeeh--hHHHHHHHHHHHHHHHHHHHhhc
Q 024109           46 DNLFVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEY--DIHTLLDLATLATTLWVIYMIRF  123 (272)
Q Consensus        46 ~~~~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~Ly~lVf~~Rl~~~~~~~y--~~~~~~k~~~l~~s~~iiyli~~  123 (272)
                      |.||.+||++|++|+.+|+.||.|+|+|+|+|+|||.||++||++||+|.+...+  -+|.+||++++++++|++++|++
T Consensus         2 ~~Fr~lGD~~Hlasi~vLih~ik~tr~csGlSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~~   81 (214)
T COG5196           2 DTFRFLGDFLHLASIAVLIHKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMRF   81 (214)
T ss_pred             cHHHHHhHHHHHHHHHHHHHHhhhcceecceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999999999999999999988763211  24799999999999999999999


Q ss_pred             ccccccccccccchhhhhHHHHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHH
Q 024109          124 NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGV  203 (272)
Q Consensus       124 kyk~Tyd~~~Dtf~~~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqktg~ve~lTshYv~~LG~  203 (272)
                      ++|+||||..|||+++++++||+++++++|++   ..+.+++||||+|||||||||||+|+||.||.|++|+||++++|+
T Consensus        82 ~~r~tYdk~lDtF~i~~ll~gsav~slff~~~---~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgL  158 (214)
T COG5196          82 KYRSTYDKKLDTFNILTLLVGSAVFSLFFTRG---GTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGL  158 (214)
T ss_pred             cccchHHHhhhhhhhhhhhhhhhhheeeecCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHH
Confidence            99999999999999999999999999999876   569999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccchhhccCCCcchHHHHHHHHHHHHHhhhhhhhhhhhcCCceeeecCC
Q 024109          204 ARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS  269 (272)
Q Consensus       204 yR~lyl~nWi~ry~~~~~~~~~~~g~g~~~~~~ii~givQt~ly~DFfy~Y~~~v~~G~~~~~LP~  269 (272)
                      ||++|++|||+|+..+.++         -+-+++.+|++||++|.|||+.|+|.|.+|++ ++||.
T Consensus       159 YRalYip~wI~r~~~~~kk---------~~~iai~aGivQTlLY~DFf~iYyr~V~rGk~-f~LP~  214 (214)
T COG5196         159 YRALYIPYWILRKVYDIKK---------TGNIAIAAGIVQTLLYLDFFAIYYRYVFRGKS-FSLPS  214 (214)
T ss_pred             HHHhhhhHHHHHhhhcccc---------cccchhHHHHHHHHHHHHhHHhhhhhhhcccc-cCCCC
Confidence            9999999999999655321         23379999999999999999999999999999 99995


No 3  
>PF00810 ER_lumen_recept:  ER lumen protein retaining receptor;  InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known.   The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00  E-value=4.3e-55  Score=370.97  Aligned_cols=144  Identities=40%  Similarity=0.735  Sum_probs=136.5

Q ss_pred             cccccccchhHHHHHHHHhhhhcc--eeee-hhHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhHHHHHHH
Q 024109           72 TCAGLSLKSQELTAIFLAVRLYCS--FVME-YDIHTLLDLATLATTLWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVL  148 (272)
Q Consensus        72 S~~GiSlkTQ~Ly~lVf~~Rl~~~--~~~~-y~~~~~~k~~~l~~s~~iiyli~~kyk~Tyd~~~Dtf~~~~liiP~~vL  148 (272)
                      ||+|+|+|||+||++||++||+|+  +... ..+|++||++++++|++++|+|+.|||+|||+++|+|+..++++||++|
T Consensus         1 S~~GlSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~~~~~Ty~~~~D~f~~~~li~p~~vL   80 (147)
T PF00810_consen    1 SCSGLSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFFKYKSTYDKEIDTFRLEYLIVPCFVL   80 (147)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhheeehhhhhccccchhhhHHHHHHHHH
Confidence            899999999999999999999998  4321 1257999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 024109          149 ALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQV  216 (272)
Q Consensus       149 ali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqktg~ve~lTshYv~~LG~yR~lyl~nWi~ry  216 (272)
                      |+++|| .+++++.|++||||+|||||||+|||+|+||+||+|++|+||+++||+||++|++|||+||
T Consensus        81 a~i~~p-~~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY  147 (147)
T PF00810_consen   81 ALIFHP-LNSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWIYRY  147 (147)
T ss_pred             HHHHhc-cccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999 6789999999999999999999999999999999999999999999999999999999996


No 4  
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.18  E-value=0.48  Score=42.89  Aligned_cols=137  Identities=17%  Similarity=0.181  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhhcccccccccchhHHHHHHHHhh-------hhcce-eeehh---HHHHHHHHH-----HHHHHHHHH
Q 024109           56 HSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR-------LYCSF-VMEYD---IHTLLDLAT-----LATTLWVIY  119 (272)
Q Consensus        56 hl~s~~iLl~KI~~~KS~~GiSlkTQ~Ly~lVf~~R-------l~~~~-~~~y~---~~~~~k~~~-----l~~s~~iiy  119 (272)
                      ...+..-=+.|++|+||++|+|+..-.+-.+.+++-       +++.. ..+|.   +....|-++     ++.++.+++
T Consensus        15 ~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~~~   94 (220)
T TIGR00951        15 WSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIVLH   94 (220)
T ss_pred             HHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence            555666667999999999999999987655555433       22111 11111   111112222     223333333


Q ss_pred             Hhhcccccccccccccch--h--hhhHHHHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchh
Q 024109          120 MIRFNLRSSYMEDKDNFA--I--YYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFT  194 (272)
Q Consensus       120 li~~kyk~Tyd~~~Dtf~--~--~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqktg~ve~lT  194 (272)
                      .+. ++.+..++...+..  .  .++.+.+..+..+..+ ...-.+.+.++.-.+-+-.++-+||..+-.|.+..+.+-
T Consensus        95 q~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glS  171 (220)
T TIGR00951        95 QCG-DYERGWQRVSNPWILRILVALLACFATLLVALLSP-ITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLS  171 (220)
T ss_pred             HHh-hccccccccchhHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCC
Confidence            322 22211111111111  1  1222323333333332 233456777777888888889999999999886554443


No 5  
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.84  E-value=0.15  Score=46.22  Aligned_cols=172  Identities=19%  Similarity=0.229  Sum_probs=101.3

Q ss_pred             HHHHhhcccccccccchhHHHHHHHHhhhhcceeeehhHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhHH
Q 024109           64 IYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDLATLATTLWVIYMIRFNLRSSYMEDKDNFAIYYVVV  143 (272)
Q Consensus        64 l~KI~~~KS~~GiSlkTQ~Ly~lVf~~Rl~~~~~~~y~~~~~~k~~~l~~s~~iiyli~~kyk~Tyd~~~Dtf~~~~lii  143 (272)
                      +.||..+||+.|+|+.+|+|=.+-++.-+--.+.+-|+-.+.+|..++..+..++-++.+.|+-. .-..|.+-..+.++
T Consensus        50 I~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~gE~~fLl~Q~vili~~if~f~~~-~~~~v~~l~~~~~v  128 (230)
T KOG3211|consen   50 IMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSYGEYPFLLLQAVILILCIFHFSGQ-TVTVVQFLGYIALV  128 (230)
T ss_pred             HHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhHHHHHHHHHHHHHHHHHHHHhccc-eeehhhHHHHHHHH
Confidence            58999999999999999998777776443212223333446789999999998888888887711 11223344344444


Q ss_pred             HHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhc---CCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024109          144 PCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNT---KIVEPFTAHYVFALGVARFLSCAHWVLQVLDSR  220 (272)
Q Consensus       144 P~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqkt---g~ve~lTshYv~~LG~yR~lyl~nWi~ry~~~~  220 (272)
                      +....+...     +.++.+..=+-.+-.-.++=+||+.-..|+   |...-+|..--+.=.+.|.++=      ..|.+
T Consensus       129 ~~~~~sk~~-----p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts------iq~t~  197 (230)
T KOG3211|consen  129 VSVLASKAL-----PLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS------IQETG  197 (230)
T ss_pred             HHHHHHhhh-----hHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH------HHhcC
Confidence            433222111     122333333333334457889999988876   5666677666666667776642      23322


Q ss_pred             ccchhhccCCCcchHHHHHHHHHHHHHhhhhhhhh
Q 024109          221 GHLLVALGYGLWPSMVLISEIVQTFILADFCYYYV  255 (272)
Q Consensus       221 ~~~~~~~g~g~~~~~~ii~givQt~ly~DFfy~Y~  255 (272)
                      + ...+       .--+++-..+-.+.+.++.|+=
T Consensus       198 d-~~ml-------l~~v~s~~~Ng~i~aq~l~Y~s  224 (230)
T KOG3211|consen  198 D-FLML-------LRFVISLALNGLITAQVLRYWS  224 (230)
T ss_pred             C-hhhH-------HHHHHHHHHhHHHHHHHHHHHh
Confidence            1 1111       0123455567777777776653


No 6  
>PF04193 PQ-loop:  PQ loop repeat 
Probab=93.47  E-value=0.41  Score=33.99  Aligned_cols=54  Identities=17%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 024109          162 NRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQ  215 (272)
Q Consensus       162 ~eilWtFSiyLEsVAILPQL~mlqktg~ve~lTshYv~~LG~yR~lyl~nWi~r  215 (272)
                      .+++...+..+++++-+||+....|++.+|.+.--++.......++.+++.+..
T Consensus         2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~   55 (61)
T PF04193_consen    2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS   55 (61)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            467888999999999999999999999999999999999999999988887765


No 7  
>PF04193 PQ-loop:  PQ loop repeat 
Probab=92.22  E-value=0.23  Score=35.31  Aligned_cols=45  Identities=24%  Similarity=0.073  Sum_probs=35.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHhhhh
Q 024109           49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLY   93 (272)
Q Consensus        49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~Ly~lVf~~Rl~   93 (272)
                      -.++-..-+++.+-=++|.+|+||+.|+|..+..+..+..+.+.+
T Consensus         6 g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~   50 (61)
T PF04193_consen    6 GIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVL   50 (61)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence            344555666677777899999999999999999988887777754


No 8  
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=84.20  E-value=0.73  Score=28.62  Aligned_cols=22  Identities=32%  Similarity=0.249  Sum_probs=18.5

Q ss_pred             HHHHhhcccccccccchhHHHH
Q 024109           64 IYKLMKEKTCAGLSLKSQELTA   85 (272)
Q Consensus        64 l~KI~~~KS~~GiSlkTQ~Ly~   85 (272)
                      ++|++|+||+.|+|+-+..+-.
T Consensus         7 i~~~~~~ks~~glS~~~~~l~~   28 (32)
T smart00679        7 IIKNYRRKSTEGLSILFVLLWL   28 (32)
T ss_pred             HHHHHHcCCcCcCCHHHHHHHH
Confidence            6899999999999998866543


No 9  
>PHA02246 hypothetical protein
Probab=75.14  E-value=27  Score=30.73  Aligned_cols=153  Identities=18%  Similarity=0.234  Sum_probs=82.8

Q ss_pred             HHHHHhhcccccccccchhHHHHHHHHhhh--hcceeeehhHHHHHHHHH--HHHHHHHHHHhhcccccccccccccchh
Q 024109           63 LIYKLMKEKTCAGLSLKSQELTAIFLAVRL--YCSFVMEYDIHTLLDLAT--LATTLWVIYMIRFNLRSSYMEDKDNFAI  138 (272)
Q Consensus        63 Ll~KI~~~KS~~GiSlkTQ~Ly~lVf~~Rl--~~~~~~~y~~~~~~k~~~--l~~s~~iiyli~~kyk~Tyd~~~Dtf~~  138 (272)
                      -+..+.++||..|+|-  -.-|++++..-.  .+.....-   +...+++  +-..+-++.+.-..|     +.+|-|..
T Consensus        23 gL~slvk~~nv~GvS~--~FWYLi~~tvgiSfyNlL~T~~---~~fqi~svg~nl~lgivcLlv~~~-----rkkd~f~~   92 (192)
T PHA02246         23 GLVALVKAESVKGVSN--YFWYLIVATVGISFYNLLLTDA---SVFQIVSVGLNLTLGIVCLLVASY-----RKKDYFSI   92 (192)
T ss_pred             hHHHHhhhcccccHHH--HHHHHHHHHHHHHHHHHHhcCC---ceEEEeeeehhhhhhhhheeeehh-----hccccccc
Confidence            3467889999999983  456777775442  11111000   0001100  011111222222222     34677877


Q ss_pred             hhhHHHHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024109          139 YYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLD  218 (272)
Q Consensus       139 ~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqktg~ve~lTshYv~~LG~yR~lyl~nWi~ry~~  218 (272)
                      .++++-++.+-++-       .+.|+.-+-+.----.|-.||...+.|+++.|....-.-..+|..-++-..+-...  .
T Consensus        93 ~fiiifSLllfll~-------~~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lt--h  163 (192)
T PHA02246         93 PFIIVFSLLLFLLS-------DFTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLT--H  163 (192)
T ss_pred             hHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhh--C
Confidence            77777666553331       12444444444444568899999999999998877665555665544443333221  1


Q ss_pred             ccccchhhccCCCcchHHHHHHHHHHHHH
Q 024109          219 SRGHLLVALGYGLWPSMVLISEIVQTFIL  247 (272)
Q Consensus       219 ~~~~~~~~~g~g~~~~~~ii~givQt~ly  247 (272)
                                   -.+..+++|+++..+.
T Consensus       164 -------------v~~hIiiTEf~N~iLi  179 (192)
T PHA02246        164 -------------TYVHIIATEFVNFVLI  179 (192)
T ss_pred             -------------CcceeeHHHHHHHHHH
Confidence                         1122578999888764


No 10 
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=58.59  E-value=8.7  Score=23.63  Aligned_cols=26  Identities=31%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             hhhhhHHHHHHhcCCccchhHHHHHH
Q 024109          175 VSVLPQLRVMQNTKIVEPFTAHYVFA  200 (272)
Q Consensus       175 VAILPQL~mlqktg~ve~lTshYv~~  200 (272)
                      ++-+||.....|++.++.+..-+++.
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l   26 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLL   26 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence            46799999999999999887666653


No 11 
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=51.83  E-value=57  Score=29.45  Aligned_cols=39  Identities=18%  Similarity=0.057  Sum_probs=28.9

Q ss_pred             HHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Q 024109          172 LEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCA  210 (272)
Q Consensus       172 LEsVAILPQL~mlqktg~ve~lTshYv~~LG~yR~lyl~  210 (272)
                      .=+++-+||+....|++.+|.+.-.++..--..=+.|..
T Consensus        14 ~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~   52 (220)
T TIGR00951        14 AWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVI   52 (220)
T ss_pred             HHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHH
Confidence            345678999999999999999988888844443333333


No 12 
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=47.79  E-value=2.1e+02  Score=26.72  Aligned_cols=44  Identities=11%  Similarity=-0.010  Sum_probs=32.2

Q ss_pred             HHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHH
Q 024109          168 FCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAH  211 (272)
Q Consensus       168 FSiyLEsVAILPQL~mlqktg~ve~lTshYv~~LG~yR~lyl~n  211 (272)
                      -|--++.-+.+||..+-.|.+.+|.++--.-++..+....|.+-
T Consensus       172 l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s  215 (260)
T KOG2913|consen  172 LSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS  215 (260)
T ss_pred             HHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc
Confidence            56678889999999999999999988874444444444444443


No 13 
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=42.50  E-value=2.9e+02  Score=25.76  Aligned_cols=181  Identities=16%  Similarity=0.191  Sum_probs=86.3

Q ss_pred             HHHHhhHHHHHHHH------HHHHHHhhcccccccccchhHHHHHHH--Hhhhhcceeeeh---hHHHHHHHHHHHHHHH
Q 024109           48 LFVAAEAVHSIGIS------VLIYKLMKEKTCAGLSLKSQELTAIFL--AVRLYCSFVMEY---DIHTLLDLATLATTLW  116 (272)
Q Consensus        48 ~~llgdl~hl~s~~------iLl~KI~~~KS~~GiSlkTQ~Ly~lVf--~~Rl~~~~~~~y---~~~~~~k~~~l~~s~~  116 (272)
                      ..++|.+....+++      -..++|+|+||.+|.|--==++-.+.-  ..||-..-...+   ..|      .+.+.+.
T Consensus         6 ~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN------~~G~~ie   79 (243)
T KOG1623|consen    6 LFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITIN------GIGLVIE   79 (243)
T ss_pred             HHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEe------hhcHHHH
Confidence            44567777766654      356899999999999976544333322  233321111011   012      2233333


Q ss_pred             HHHHhhcccccccccccccc---hhhhhHHHHHHHHHHhCCCCCcc-hhhhHHHH--HHHHHHHhhhhhHHHHHHhcCCc
Q 024109          117 VIYMIRFNLRSSYMEDKDNF---AIYYVVVPCAVLALLIHPSTSHN-ILNRIFWA--FCVYLEAVSVLPQLRVMQNTKIV  190 (272)
Q Consensus       117 iiyli~~kyk~Tyd~~~Dtf---~~~~liiP~~vLali~~~~~~~~-~~~eilWt--FSiyLEsVAILPQL~mlqktg~v  190 (272)
                      ++|.+.+-|...-++..+-.   ....+.+-++.....+|.+.++. ..--+|=.  -++|.-..+.++   +-=|++.+
T Consensus        80 ~~Yi~~f~~ya~~k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~---~VIktkSv  156 (243)
T KOG1623|consen   80 TVYISIFLYYAPKKKTVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIR---KVIKTKSV  156 (243)
T ss_pred             HHHHHHHheecCchheeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhh---hheecCce
Confidence            44444443333333311111   11122222222233344332212 22233333  455666666666   44466888


Q ss_pred             cchhHHHHHHHHHHHHHHHHHH-HHHHhhccccchhhccCCCcchHHHHHHHHHHHHH
Q 024109          191 EPFTAHYVFALGVARFLSCAHW-VLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFIL  247 (272)
Q Consensus       191 e~lTshYv~~LG~yR~lyl~nW-i~ry~~~~~~~~~~~g~g~~~~~~ii~givQt~ly  247 (272)
                      |.+----    -+.-++-..-| +|...-.+. . .+..+    .+..+.|++|..+|
T Consensus       157 E~mPf~L----s~a~fl~a~~W~lYGlli~D~-~-IaipN----~iG~~l~~~QL~Ly  204 (243)
T KOG1623|consen  157 EYMPFPL----SFALFLVAVQWLLYGLLIKDF-F-IAIPN----VLGFLLGLIQLILY  204 (243)
T ss_pred             eeechHH----HHHHHHHHHHHHHHHHHhcCe-E-EEccc----HHHHHHHHHHHHHh
Confidence            8775433    33445556667 555443221 1 01111    25778999999999


No 14 
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=38.07  E-value=23  Score=30.11  Aligned_cols=27  Identities=33%  Similarity=0.374  Sum_probs=20.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 024109           49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE   82 (272)
Q Consensus        49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~   82 (272)
                      +++|...|+       .|-.+...+.|||+|.|+
T Consensus        49 rIAGYIThl-------mkri~~gpvrgis~klqe   75 (134)
T PTZ00154         49 KIAGFVTHL-------MKRIQKGPVRGISLKLQE   75 (134)
T ss_pred             HHHHHHHHH-------HhhhccCCccccceehhH
Confidence            567888876       344556689999999998


No 15 
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=35.20  E-value=1.6e+02  Score=23.39  Aligned_cols=48  Identities=25%  Similarity=0.259  Sum_probs=37.5

Q ss_pred             HHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 024109          167 AFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVL  214 (272)
Q Consensus       167 tFSiyLEsVAILPQL~mlqktg~ve~lTshYv~~LG~yR~lyl~nWi~  214 (272)
                      +.+--+-.+|.+||+.-.-|+++..+++--....+..++.+-+++=+-
T Consensus        10 ~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygIL   57 (89)
T COG4095          10 TIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGIL   57 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            344456678999999999999999999888888888888875554433


No 16 
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=34.14  E-value=1.6e+02  Score=23.37  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=30.3

Q ss_pred             HhhHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHH
Q 024109           51 AAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLA   89 (272)
Q Consensus        51 lgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~Ly~lVf~   89 (272)
                      .|...-.++++.=+.|+.|+||.+++|+-+-+...+..+
T Consensus        11 ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~   49 (89)
T COG4095          11 IAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALF   49 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence            456666778888899999999999999988665444443


No 17 
>PF09586 YfhO:  Bacterial membrane protein YfhO;  InterPro: IPR018580  The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins. 
Probab=29.65  E-value=6.3e+02  Score=26.66  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=27.6

Q ss_pred             HHHHhCCCceeehHHHHHHHHHHHHHHHHhccChhHHHHhhHHHHHH-HHHHHHHHhhccccc
Q 024109           13 TWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSIG-ISVLIYKLMKEKTCA   74 (272)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgdl~hl~s-~~iLl~KI~~~KS~~   74 (272)
                      -++|+...+..=+..++.+++=..--|.+...+++.+  .|..=.+- +++-+-|+.++|...
T Consensus       109 ~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~f--ld~~i~lPL~llgie~~~~~~k~~  169 (843)
T PF09586_consen  109 LYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMF--LDAMILLPLLLLGIERLLKEKKWW  169 (843)
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHhcCCcc
Confidence            4566665543223333333332223344444555555  23333333 334456777777643


No 18 
>PF02790 COX2_TM:  Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.;  InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.  The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=28.95  E-value=67  Score=23.70  Aligned_cols=42  Identities=17%  Similarity=0.551  Sum_probs=19.5

Q ss_pred             HHHHHHHHhhc-ccccccccccccchhhhhHHHHHHHHHHhCC
Q 024109          113 TTLWVIYMIRF-NLRSSYMEDKDNFAIYYVVVPCAVLALLIHP  154 (272)
Q Consensus       113 ~s~~iiyli~~-kyk~Tyd~~~Dtf~~~~liiP~~vLali~~~  154 (272)
                      .....++.+.. +..+.+..+.++.-...-++|+.++..+.-|
T Consensus        38 V~~~l~~~~~~~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~p   80 (84)
T PF02790_consen   38 VFYFLIYFLFNSKFPNKFFNHNNKLEIIWTIIPAIILLFLAFP   80 (84)
T ss_dssp             HHHHHHHHHHHSSSS--S---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeecccccccccccccccccchhhhhhhhHHHHHHHHHHHhh
Confidence            33444444444 3333333333333344678888877666544


No 19 
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=26.13  E-value=24  Score=36.23  Aligned_cols=54  Identities=22%  Similarity=0.240  Sum_probs=31.6

Q ss_pred             hhhhHHHHHH----HHHHhCCCCCcc-hhhhHHHHHHHHHHHhhhhhHHHHHHhcCCcc
Q 024109          138 IYYVVVPCAV----LALLIHPSTSHN-ILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVE  191 (272)
Q Consensus       138 ~~~liiP~~v----Lali~~~~~~~~-~~~eilWtFSiyLEsVAILPQL~mlqktg~ve  191 (272)
                      +.|++.|..+    -+++-.|..+.+ |.++.+..+=.----+-++|||+.-.|=+.|.
T Consensus       440 Ls~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVA  498 (592)
T KOG2489|consen  440 LSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVA  498 (592)
T ss_pred             HHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhh
Confidence            4577777443    345544442222 44555554444444456899999999877654


No 20 
>PF06363 Picorna_P3A:  Picornaviridae P3A protein;  InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=21.72  E-value=1.3e+02  Score=24.17  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=15.6

Q ss_pred             HHhhHHHHHHHHHHHHHHhhc
Q 024109           50 VAAEAVHSIGISVLIYKLMKE   70 (272)
Q Consensus        50 llgdl~hl~s~~iLl~KI~~~   70 (272)
                      +.+-++..+||+.|.+|+.+.
T Consensus        74 ~~S~~tS~isIL~LV~~~~KK   94 (100)
T PF06363_consen   74 VVSAVTSFISILLLVTKIFKK   94 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            345566778999999988765


No 21 
>KOG0187 consensus 40S ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=21.05  E-value=75  Score=26.88  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 024109           49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE   82 (272)
Q Consensus        49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~   82 (272)
                      .++|...|+      .-+|.+. -+.|||+|.|+
T Consensus        49 kIAGyvtHL------mkrIqkG-pvRGISiKLQE   75 (134)
T KOG0187|consen   49 KIAGYVTHL------MKRIQKG-PVRGISIKLQE   75 (134)
T ss_pred             HHHHHHHHH------HHHHHcC-CccceeEeecH
Confidence            368888885      4455555 78899999998


Done!