Query 024109
Match_columns 272
No_of_seqs 117 out of 374
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 49.5 8.1 0.00028 31.5 2.1 27 49-82 49-75 (130)
2 1v54_B Cytochrome C oxidase po 13.0 1.6E+02 0.0055 25.5 3.8 19 136-154 61-79 (227)
3 3u5c_R RP51A, 40S ribosomal pr 11.1 1.6E+02 0.0054 24.0 2.9 27 49-82 49-75 (136)
4 2k37_A Chlorosome protein A; b 8.9 1.1E+02 0.0039 21.4 1.1 11 166-176 27-37 (59)
5 2fm8_C Cell invasion protein S 7.5 1.4E+02 0.0047 26.1 1.2 14 169-182 219-232 (240)
6 2ckc_A Chromodomain-helicase-D 7.3 2.6E+02 0.009 20.7 2.5 14 7-20 45-58 (80)
7 2fm9_A Cell invasion protein S 7.1 1.2E+02 0.0042 26.1 0.7 12 171-182 195-206 (215)
8 3iz6_Q 40S ribosomal protein S 6.8 1.9E+02 0.0066 23.6 1.7 27 49-82 49-75 (141)
9 2gsm_B Cytochrome C oxidase su 6.4 3.5E+02 0.012 23.8 3.3 15 140-154 79-93 (262)
10 2lat_A Dolichyl-diphosphooligo 6.4 3.7E+02 0.013 17.0 2.5 14 30-43 16-29 (37)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=49.46 E-value=8.1 Score=31.49 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=21.6
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 024109 49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (272)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~ 82 (272)
+++|...| +.|-.+...+.|||+|-|+
T Consensus 49 kIAGYVTh-------lmkriq~gpvrgis~klqE 75 (130)
T 2xzm_V 49 KIAGFATH-------LMKRIQKGPVRGISLKVQE 75 (130)
T ss_dssp HHHHHHHH-------HHHHTTTSCCTTCCCTTTT
T ss_pred cccchhhh-------HhhhcccCcccccccchhH
Confidence 46888888 3555667789999999998
No 2
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=13.02 E-value=1.6e+02 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.581 Sum_probs=10.8
Q ss_pred chhhhhHHHHHHHHHHhCC
Q 024109 136 FAIYYVVVPCAVLALLIHP 154 (272)
Q Consensus 136 f~~~~liiP~~vLali~~~ 154 (272)
.-..+.++|++++..+.-|
T Consensus 61 lEiiWTiiP~iil~~la~p 79 (227)
T 1v54_B 61 VETIWTILPAIILILIALP 79 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeehHHHHHHHHHHHH
Confidence 3344667777666555433
No 3
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=11.13 E-value=1.6e+02 Score=24.01 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=19.9
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 024109 49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (272)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~ 82 (272)
+++|...|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThL-------mKriq~GpvrgisiklqE 75 (136)
T 3u5c_R 49 KIAGYTTHL-------MKRIQKGPVRGISFKLQE 75 (136)
T ss_dssp HHHHHHHHH-------HHHHTTSCBTTBCCSHHH
T ss_pred ehhhhhhhh-------hcccccCCcccceeehhH
Confidence 467777775 344555678899999998
No 4
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=8.86 E-value=1.1e+02 Score=21.41 Aligned_cols=11 Identities=0% Similarity=0.124 Sum_probs=9.9
Q ss_pred HHHHHHHHHhh
Q 024109 166 WAFCVYLEAVS 176 (272)
Q Consensus 166 WtFSiyLEsVA 176 (272)
|++|.++|+++
T Consensus 27 ~~vg~~le~~g 37 (59)
T 2k37_A 27 ETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHTGGGT
T ss_pred HHHHHHHHHHH
Confidence 78999999986
No 5
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=7.46 E-value=1.4e+02 Score=26.14 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhHHH
Q 024109 169 CVYLEAVSVLPQLR 182 (272)
Q Consensus 169 SiyLEsVAILPQL~ 182 (272)
+==||.+|++|||.
T Consensus 219 aR~Le~~AviP~LL 232 (240)
T 2fm8_C 219 ARHLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 34589999999985
No 6
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=7.34 E-value=2.6e+02 Score=20.69 Aligned_cols=14 Identities=14% Similarity=0.548 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhCCC
Q 024109 7 PIHAVSTWVRRQPP 20 (272)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (272)
+.+...+|||+|+.
T Consensus 45 ~~KdL~dWLrqhP~ 58 (80)
T 2ckc_A 45 KNKDLVEWLKLHPT 58 (80)
T ss_dssp BHHHHHHHHHHCTT
T ss_pred cccCHHHHHHHCCC
Confidence 34558899999986
No 7
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=7.09 E-value=1.2e+02 Score=26.14 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.2
Q ss_pred HHHHhhhhhHHH
Q 024109 171 YLEAVSVLPQLR 182 (272)
Q Consensus 171 yLEsVAILPQL~ 182 (272)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T 2fm9_A 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 378999999985
No 8
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=6.77 E-value=1.9e+02 Score=23.62 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=20.0
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 024109 49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (272)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlkTQ~ 82 (272)
+++|...|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 49 KVAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhhheeeeh-------hhccccCCccccceehhH
Confidence 567777775 344455578999999998
No 9
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=6.43 E-value=3.5e+02 Score=23.80 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHhCC
Q 024109 140 YVVVPCAVLALLIHP 154 (272)
Q Consensus 140 ~liiP~~vLali~~~ 154 (272)
+.++|+++|.++.-|
T Consensus 79 WTiiP~iILi~la~p 93 (262)
T 2gsm_B 79 WTIVPIVILVAIGAF 93 (262)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 556666666555433
No 10
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=6.42 E-value=3.7e+02 Score=17.04 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhc
Q 024109 30 SGMAALVLLRFIVH 43 (272)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (272)
++.++++++||+..
T Consensus 16 ~~~~~LIVlYH~v~ 29 (37)
T 2lat_A 16 VSLFLLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44556678898764
Done!