Query 024109
Match_columns 272
No_of_seqs 117 out of 374
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 18:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024109.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024109hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 24.7 22 0.0016 24.7 2.7 32 124-155 49-80 (90)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 15.5 1.7E+02 0.013 20.2 6.6 14 140-153 81-94 (107)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 12.5 55 0.004 22.7 2.4 17 139-155 74-90 (100)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 9.3 61 0.0044 22.2 1.6 13 140-152 66-78 (91)
5 d2exna1 b.165.1.1 (A:1-128) Hy 7.2 49 0.0036 24.0 0.3 13 68-80 7-19 (128)
6 d2fm9a1 a.257.1.1 (A:49-263) C 7.1 58 0.0042 26.2 0.7 12 171-182 195-206 (215)
7 d2ckca1 d.76.2.1 (A:2563-2622) 3.8 3E+02 0.022 17.5 2.5 14 7-20 25-38 (60)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 2.7 3.9E+02 0.028 15.3 1.9 12 139-150 13-24 (36)
9 d1dq3a3 d.95.2.2 (A:129-226) P 2.6 2.6E+02 0.019 19.2 1.3 13 189-201 80-92 (98)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 2.6 5.5E+02 0.04 14.4 2.7 18 235-252 7-24 (34)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.69 E-value=22 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=17.2
Q ss_pred ccccccccccccchhhhhHHHHHHHHHHhCCC
Q 024109 124 NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPS 155 (272)
Q Consensus 124 kyk~Tyd~~~Dtf~~~~liiP~~vLali~~~~ 155 (272)
++++.+-.+..+.-...-++|+++|..+--|+
T Consensus 49 ~~~~~~~~~~~~lEiiWTiiP~lILi~ia~PS 80 (90)
T d1v54b2 49 KLTHTSTMDAQEVETIWTILPAIILILIALPS 80 (90)
T ss_dssp SCCCCSCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 44333333333344456677777776666554
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=15.46 E-value=1.7e+02 Score=20.17 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHhC
Q 024109 140 YVVVPCAVLALLIH 153 (272)
Q Consensus 140 ~liiP~~vLali~~ 153 (272)
..++|+++|..+.-
T Consensus 81 WTviP~lIL~~lai 94 (107)
T d3ehbb2 81 WTLVPVLILVAIGA 94 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.55 E-value=55 Score=22.71 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHhCCC
Q 024109 139 YYVVVPCAVLALLIHPS 155 (272)
Q Consensus 139 ~~liiP~~vLali~~~~ 155 (272)
...++|+++|..+.-|+
T Consensus 74 iWTviP~lILi~l~~pS 90 (100)
T d3dtub2 74 AWTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36677777766665443
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.28 E-value=61 Score=22.19 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHh
Q 024109 140 YVVVPCAVLALLI 152 (272)
Q Consensus 140 ~liiP~~vLali~ 152 (272)
.-++|++++..+.
T Consensus 66 WtiIP~iil~~ia 78 (91)
T d1fftb2 66 VWTVPILIIIFLA 78 (91)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666555443
No 5
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=7.15 E-value=49 Score=24.00 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=10.2
Q ss_pred hhcccccccccch
Q 024109 68 MKEKTCAGLSLKS 80 (272)
Q Consensus 68 ~~~KS~~GiSlkT 80 (272)
|-=|||.|+|+..
T Consensus 7 ~PIKsc~g~~~~~ 19 (128)
T d2exna1 7 QPIAECGATTQSE 19 (128)
T ss_dssp EEETTTEEECCGG
T ss_pred ecccccCCccccc
Confidence 4459999999854
No 6
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.05 E-value=58 Score=26.17 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.2
Q ss_pred HHHHhhhhhHHH
Q 024109 171 YLEAVSVLPQLR 182 (272)
Q Consensus 171 yLEsVAILPQL~ 182 (272)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 378999999985
No 7
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.75 E-value=3e+02 Score=17.50 Aligned_cols=14 Identities=14% Similarity=0.548 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhCCC
Q 024109 7 PIHAVSTWVRRQPP 20 (272)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (272)
.+....+||++|++
T Consensus 25 ~~~~L~~WL~~hP~ 38 (60)
T d2ckca1 25 KNKDLVEWLKLHPT 38 (60)
T ss_dssp BHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHCCC
Confidence 45558899999986
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.68 E-value=3.9e+02 Score=15.32 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHH
Q 024109 139 YYVVVPCAVLAL 150 (272)
Q Consensus 139 ~~liiP~~vLal 150 (272)
.|+++|+..|-.
T Consensus 13 LFilvPt~FLli 24 (36)
T d2axtm1 13 LFVLVPSVFLII 24 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578888765533
No 9
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.64 E-value=2.6e+02 Score=19.19 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=10.1
Q ss_pred CccchhHHHHHHH
Q 024109 189 IVEPFTAHYVFAL 201 (272)
Q Consensus 189 ~ve~lTshYv~~L 201 (272)
++.++||||+=.|
T Consensus 80 kar~itshy~~ll 92 (98)
T d1dq3a3 80 KARNITSHYLKLL 92 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eecccHHHHHHHH
Confidence 6778999998654
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.64 E-value=5.5e+02 Score=14.41 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 024109 235 MVLISEIVQTFILADFCY 252 (272)
Q Consensus 235 ~~ii~givQt~ly~DFfy 252 (272)
+.-++|+.-+.+.+=|||
T Consensus 7 v~tv~G~~vi~~vG~FfY 24 (34)
T d2axtj1 7 VATVAGMGVIVIVGLFFY 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehhhhhhHhheeeeee
Confidence 456788888888888887
Done!