BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024111
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
          Length = 82

 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 159 RGQATDSHSIAERVRREKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQVEFL 218
           RG+   +H+  E+  R  IN K+  L+DLV G    +  + +L + I+Y+  LQ+  + L
Sbjct: 3   RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62

Query: 219 SME 221
             E
Sbjct: 63  KQE 65


>pdb|4ATI|A Chain A, Mitf:m-Box Complex
 pdb|4ATI|B Chain B, Mitf:m-Box Complex
 pdb|4ATK|A Chain A, Mitf:e-Box Complex
 pdb|4ATK|B Chain B, Mitf:e-Box Complex
          Length = 118

 Score = 33.1 bits (74), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 157 AKRGQATDSHSIAERVRREKINKKMRCLQDLVPGCHK-DM--GMAGMLEEIINYVHSLQ 212
           AK  Q  D+H++ ER RR  IN +++ L  L+P  +  DM      +L+  ++Y+  LQ
Sbjct: 22  AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ 80


>pdb|2CQ1|A Chain A, Solution Structure Of Rna Binding Domain In Ptb-Like
           Protein L
          Length = 101

 Score = 32.3 bits (72), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 136 GKKVSSNEKEEGNPERIIHVRAKRGQATDSHSIAERVRREKI 177
           G   SS +K +G P R++H+R   G+ T++  IA  +   K+
Sbjct: 1   GSSGSSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKV 42


>pdb|1CWV|A Chain A, Crystal Structure Of Invasin: A Bacterial Integrin-Binding
           Protein
          Length = 492

 Score = 31.2 bits (69), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 219 SMELAAACSSNDLNIETESSRKTQGTNSHEALEMEIWAKEAYGEYTSFHSTW 270
           S+E +  C  +D++   ESSR T GT + +     +W +  +G  T++ S W
Sbjct: 406 SLEASRQCQGSDMSAVLESSRATNGTRAPDG---TLWGE--WGSLTAYSSDW 452


>pdb|3DNM|A Chain A, Crystal Structure Hormone-Sensitive Lipase From A
           Metagenome Library
 pdb|3DNM|B Chain B, Crystal Structure Hormone-Sensitive Lipase From A
           Metagenome Library
 pdb|3DNM|C Chain C, Crystal Structure Hormone-Sensitive Lipase From A
           Metagenome Library
 pdb|3DNM|D Chain D, Crystal Structure Hormone-Sensitive Lipase From A
           Metagenome Library
          Length = 336

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 147 GNPERIIHVRAKRGQATDSHSIAERVRREKINKKMRCLQDL 187
           G PE +IHV ++    +DS ++AER     ++ +++   D+
Sbjct: 253 GLPEMLIHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDM 293


>pdb|3K6K|A Chain A, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
           From A Metagenome Library
 pdb|3K6K|B Chain B, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
           From A Metagenome Library
 pdb|3K6K|C Chain C, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
           From A Metagenome Library
 pdb|3K6K|D Chain D, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
           From A Metagenome Library
          Length = 322

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 147 GNPERIIHVRAKRGQATDSHSIAERVRREKINKKMRCLQDL 187
           G PE +IHV ++    +DS ++AER     ++ +++   D+
Sbjct: 239 GLPEMLIHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDM 279


>pdb|1OYV|I Chain I, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
           Complex With Subtilisin Carlsberg
 pdb|1PJU|A Chain A, Unbound Form Of Tomato Inhibitor-Ii
 pdb|1PJU|B Chain B, Unbound Form Of Tomato Inhibitor-Ii
 pdb|1PJU|C Chain C, Unbound Form Of Tomato Inhibitor-Ii
 pdb|1PJU|D Chain D, Unbound Form Of Tomato Inhibitor-Ii
          Length = 123

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 62  GCSYNNSFSNF--QTDSRIVVPRVRTVRGNEDVLYESSRREVTEQSTSISKTMCSSASTS 119
           GC+Y NSF  F  + +S    P   T   + ++ Y  SR   ++  + I  T C++  T 
Sbjct: 36  GCNYYNSFGKFICEGESDPKRPNACTFNCDPNIAY--SRCPRSQGKSLIYPTGCTTCCTG 93

Query: 120 ETQGDTYKNKKIRSRRGKKVSSNEKEE 146
                 YK      + GK V   E +E
Sbjct: 94  ------YKGCYYFGKDGKFVCEGESDE 114


>pdb|1UKL|C Chain C, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|D Chain D, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|E Chain E, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|F Chain F, Crystal Structure Of Importin-Beta And Srebp-2 Complex
          Length = 61

 Score = 27.7 bits (60), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 174 REKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQ 212
           R  IN K+  L+DLV G       +G+L + I+Y+  LQ
Sbjct: 1   RSSINDKIIELKDLVXGTDAKXHKSGVLRKAIDYIKYLQ 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.124    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,427,008
Number of Sequences: 62578
Number of extensions: 271170
Number of successful extensions: 474
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 15
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)