Query 024111
Match_columns 272
No_of_seqs 170 out of 769
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 1.4E-17 4.7E-22 128.0 4.3 62 163-224 7-68 (82)
2 4ati_A MITF, microphthalmia-as 99.7 4.5E-17 1.5E-21 133.0 7.2 71 151-221 16-89 (118)
3 4h10_B Circadian locomoter out 99.6 1.9E-16 6.6E-21 119.8 3.7 57 163-219 9-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.6 2.9E-16 1E-20 115.7 2.8 54 163-216 3-62 (63)
5 1an4_A Protein (upstream stimu 99.6 6.3E-16 2.1E-20 113.3 2.9 56 161-216 4-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 1E-15 3.5E-20 116.1 0.2 53 161-213 8-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.5 4.1E-14 1.4E-18 108.1 6.9 59 164-222 4-63 (83)
8 1hlo_A Protein (transcription 99.5 4.3E-14 1.5E-18 107.5 6.6 60 164-223 14-74 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 9.4E-14 3.2E-18 108.2 6.8 58 165-222 9-68 (88)
10 3u5v_A Protein MAX, transcript 99.4 8.6E-14 2.9E-18 106.1 3.4 57 163-219 6-65 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 7.5E-12 2.6E-16 96.0 7.8 58 165-222 4-63 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.0 1.6E-10 5.6E-15 86.4 5.0 52 165-216 15-67 (68)
13 4f3l_A Mclock, circadian locom 99.0 1.5E-10 5.1E-15 106.7 5.8 54 161-214 11-64 (361)
14 2ql2_B Neurod1, neurogenic dif 99.0 5.1E-10 1.8E-14 81.7 5.7 52 165-216 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 7E-10 2.4E-14 103.6 3.1 54 161-214 12-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 2.1E-08 7.1E-13 78.0 6.2 50 173-222 3-55 (83)
17 2lfh_A DNA-binding protein inh 98.5 3.8E-08 1.3E-12 73.9 1.9 46 168-213 20-67 (68)
18 4aya_A DNA-binding protein inh 97.9 1.5E-05 5E-10 63.5 6.2 49 170-218 33-83 (97)
19 2er8_A Regulatory protein Leu3 37.3 25 0.00087 24.4 3.0 20 206-225 49-68 (72)
20 2wt7_A Proto-oncogene protein 36.0 78 0.0027 22.3 5.4 17 205-221 22-38 (63)
21 3muj_A Transcription factor CO 35.7 39 0.0013 28.2 4.2 35 177-211 96-133 (138)
22 1f1f_A Cytochrome C6; heme, pr 31.2 96 0.0033 21.2 5.3 40 174-214 48-87 (89)
23 1zme_C Proline utilization tra 28.1 46 0.0016 22.8 3.0 19 206-224 44-62 (70)
24 1p3q_Q VPS9P, vacuolar protein 27.1 64 0.0022 22.8 3.6 26 168-193 3-28 (54)
25 3coq_A Regulatory protein GAL4 25.0 52 0.0018 23.5 2.9 27 205-231 44-70 (89)
26 2jee_A YIIU; FTSZ, septum, coi 23.7 82 0.0028 24.0 3.9 24 201-224 15-38 (81)
27 3ph2_B Cytochrome C6; photosyn 23.5 1.6E+02 0.0056 19.7 5.3 39 175-214 46-84 (86)
28 1cyi_A Cytochrome C6, cytochro 23.1 1.6E+02 0.0056 20.1 5.3 39 174-213 46-84 (90)
29 1c6r_A Cytochrome C6; electron 22.5 1.6E+02 0.0055 20.1 5.1 39 174-213 47-85 (89)
30 1gdv_A Cytochrome C6; RED ALGA 22.1 1.8E+02 0.0062 19.4 5.3 37 176-213 46-82 (85)
31 1pyi_A Protein (pyrimidine pat 21.8 83 0.0028 22.8 3.6 22 205-226 47-68 (96)
32 1m2x_A Class B carbapenemase B 20.4 41 0.0014 27.4 1.8 32 185-217 190-221 (223)
33 2ke4_A CDC42-interacting prote 20.2 1.5E+02 0.0051 22.9 4.8 61 164-225 8-88 (98)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.68 E-value=1.4e-17 Score=127.96 Aligned_cols=62 Identities=29% Similarity=0.417 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHhh
Q 024111 163 TDSHSIAERVRREKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQVEFLSMELAA 224 (272)
Q Consensus 163 ~~sHs~aERrRRekIner~~~Lr~LVP~~~K~mdKAsiL~eAIdYIk~LQ~qV~~L~~~~~a 224 (272)
+.+|+++||+||++||++|.+|++|||++..++||++||++||+||++||.+++.|+.+..+
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~ 68 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999666999999999999999999999999987543
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.68 E-value=4.5e-17 Score=133.01 Aligned_cols=71 Identities=25% Similarity=0.375 Sum_probs=51.8
Q ss_pred cchhhcccCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCC---CCChhchHHHHHHHHHHHHHHHHHHHHH
Q 024111 151 RIIHVRAKRGQATDSHSIAERVRREKINKKMRCLQDLVPGCHK---DMGMAGMLEEIINYVHSLQNQVEFLSME 221 (272)
Q Consensus 151 ~~~~~rarR~~~~~sHs~aERrRRekIner~~~Lr~LVP~~~K---~mdKAsiL~eAIdYIk~LQ~qV~~L~~~ 221 (272)
..++..+++++++.+|+++||+||++||++|.+|++|||+|.+ +++|++||++||+||++||.+++.|...
T Consensus 16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888999999999999999999999999999853 5789999999999999999999999865
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=1.9e-16 Score=119.76 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=52.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 024111 163 TDSHSIAERVRREKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQVEFLS 219 (272)
Q Consensus 163 ~~sHs~aERrRRekIner~~~Lr~LVP~~~K~mdKAsiL~eAIdYIk~LQ~qV~~L~ 219 (272)
+.+|+++||+||++||++|.+|++|||++..++||++||+.||+||+.||.++..|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 457999999999999999999999999877669999999999999999999988765
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=2.9e-16 Score=115.72 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhccCCCCC------CCCChhchHHHHHHHHHHHHHHHH
Q 024111 163 TDSHSIAERVRREKINKKMRCLQDLVPGCH------KDMGMAGMLEEIINYVHSLQNQVE 216 (272)
Q Consensus 163 ~~sHs~aERrRRekIner~~~Lr~LVP~~~------K~mdKAsiL~eAIdYIk~LQ~qV~ 216 (272)
+.+|+++||+||++||..|..|+.|||+|. .+++||.||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999999763 346799999999999999998764
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=6.3e-16 Score=113.26 Aligned_cols=56 Identities=25% Similarity=0.454 Sum_probs=50.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhccCCCCCC-----CCChhchHHHHHHHHHHHHHHHH
Q 024111 161 QATDSHSIAERVRREKINKKMRCLQDLVPGCHK-----DMGMAGMLEEIINYVHSLQNQVE 216 (272)
Q Consensus 161 ~~~~sHs~aERrRRekIner~~~Lr~LVP~~~K-----~mdKAsiL~eAIdYIk~LQ~qV~ 216 (272)
..+.+|+++||+||++||+.|.+|++|||+|.. +++|++||.+||+||+.||.+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345679999999999999999999999999873 47999999999999999998753
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=1e-15 Score=116.06 Aligned_cols=53 Identities=28% Similarity=0.515 Sum_probs=47.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhccCCCCC---CCCChhchHHHHHHHHHHHHH
Q 024111 161 QATDSHSIAERVRREKINKKMRCLQDLVPGCH---KDMGMAGMLEEIINYVHSLQN 213 (272)
Q Consensus 161 ~~~~sHs~aERrRRekIner~~~Lr~LVP~~~---K~mdKAsiL~eAIdYIk~LQ~ 213 (272)
+++.+|+++||+||++||+.|.+|+.|||.|. .++|||+||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34567999999999999999999999999873 458999999999999999974
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.49 E-value=4.1e-14 Score=108.06 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=53.2
Q ss_pred CcchHHHHHHHHHHHHHHHHhhccCCCC-CCCCChhchHHHHHHHHHHHHHHHHHHHHHH
Q 024111 164 DSHSIAERVRREKINKKMRCLQDLVPGC-HKDMGMAGMLEEIINYVHSLQNQVEFLSMEL 222 (272)
Q Consensus 164 ~sHs~aERrRRekIner~~~Lr~LVP~~-~K~mdKAsiL~eAIdYIk~LQ~qV~~L~~~~ 222 (272)
..|+..||+||..||+.|..|+++||.+ ..+++|++||..||+||+.|+.+++.|+.+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999985 2348999999999999999999999988654
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=4.3e-14 Score=107.55 Aligned_cols=60 Identities=22% Similarity=0.426 Sum_probs=54.9
Q ss_pred CcchHHHHHHHHHHHHHHHHhhccCCCCC-CCCChhchHHHHHHHHHHHHHHHHHHHHHHh
Q 024111 164 DSHSIAERVRREKINKKMRCLQDLVPGCH-KDMGMAGMLEEIINYVHSLQNQVEFLSMELA 223 (272)
Q Consensus 164 ~sHs~aERrRRekIner~~~Lr~LVP~~~-K~mdKAsiL~eAIdYIk~LQ~qV~~L~~~~~ 223 (272)
..|+..||+||..||+.|..|++|||.+. .+++|+.||..||+||+.|+.+++.|+.+..
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999863 3489999999999999999999999998764
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=9.4e-14 Score=108.15 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=52.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhccCCCCC--CCCChhchHHHHHHHHHHHHHHHHHHHHHH
Q 024111 165 SHSIAERVRREKINKKMRCLQDLVPGCH--KDMGMAGMLEEIINYVHSLQNQVEFLSMEL 222 (272)
Q Consensus 165 sHs~aERrRRekIner~~~Lr~LVP~~~--K~mdKAsiL~eAIdYIk~LQ~qV~~L~~~~ 222 (272)
.|+..||+||..||+.|..|+++||.+. .+++|++||.+||+||++|+.+.+.+....
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999863 458999999999999999999998887653
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.40 E-value=8.6e-14 Score=106.15 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=49.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhccCCC---CCCCCChhchHHHHHHHHHHHHHHHHHHH
Q 024111 163 TDSHSIAERVRREKINKKMRCLQDLVPG---CHKDMGMAGMLEEIINYVHSLQNQVEFLS 219 (272)
Q Consensus 163 ~~sHs~aERrRRekIner~~~Lr~LVP~---~~K~mdKAsiL~eAIdYIk~LQ~qV~~L~ 219 (272)
+..|+..||+||..||+.|..|+.+||. +.|..+|+.||..||+||++||++|++++
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3469999999999999999999999995 44544799999999999999999999875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.28 E-value=7.5e-12 Score=96.01 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=52.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhccCCCCC--CCCChhchHHHHHHHHHHHHHHHHHHHHHH
Q 024111 165 SHSIAERVRREKINKKMRCLQDLVPGCH--KDMGMAGMLEEIINYVHSLQNQVEFLSMEL 222 (272)
Q Consensus 165 sHs~aERrRRekIner~~~Lr~LVP~~~--K~mdKAsiL~eAIdYIk~LQ~qV~~L~~~~ 222 (272)
.|+..||+||..||+.|..|+++||.+. .+++|+.||.+||+||+.|+.+.+.|..+.
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999642 347899999999999999999999888653
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.04 E-value=1.6e-10 Score=86.38 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhccCCCC-CCCCChhchHHHHHHHHHHHHHHHH
Q 024111 165 SHSIAERVRREKINKKMRCLQDLVPGC-HKDMGMAGMLEEIINYVHSLQNQVE 216 (272)
Q Consensus 165 sHs~aERrRRekIner~~~Lr~LVP~~-~K~mdKAsiL~eAIdYIk~LQ~qV~ 216 (272)
.|+..||+|+..||+.|..|+.+||.. +++++|..||..||+||.+||..++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 499999999999999999999999963 4568999999999999999998653
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.04 E-value=1.5e-10 Score=106.74 Aligned_cols=54 Identities=20% Similarity=0.417 Sum_probs=42.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCChhchHHHHHHHHHHHHHH
Q 024111 161 QATDSHSIAERVRREKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQ 214 (272)
Q Consensus 161 ~~~~sHs~aERrRRekIner~~~Lr~LVP~~~K~mdKAsiL~eAIdYIk~LQ~q 214 (272)
.++.+|+++||+||++||+.|.+|+.|||....++||++||..||+||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 344579999999999999999999999996555699999999999999999864
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.99 E-value=5.1e-10 Score=81.69 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhccCCCC--CCCCChhchHHHHHHHHHHHHHHHH
Q 024111 165 SHSIAERVRREKINKKMRCLQDLVPGC--HKDMGMAGMLEEIINYVHSLQNQVE 216 (272)
Q Consensus 165 sHs~aERrRRekIner~~~Lr~LVP~~--~K~mdKAsiL~eAIdYIk~LQ~qV~ 216 (272)
.|+.-||+|+..||+.|..|+.+||.. +++++|..+|..||+||+.|+..++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 389999999999999999999999963 5678999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.86 E-value=7e-10 Score=103.63 Aligned_cols=54 Identities=28% Similarity=0.496 Sum_probs=47.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhccCCCC---CCCCChhchHHHHHHHHHHHHHH
Q 024111 161 QATDSHSIAERVRREKINKKMRCLQDLVPGC---HKDMGMAGMLEEIINYVHSLQNQ 214 (272)
Q Consensus 161 ~~~~sHs~aERrRRekIner~~~Lr~LVP~~---~K~mdKAsiL~eAIdYIk~LQ~q 214 (272)
+++++|+.+||+||++||+.|.+|+.|||.+ ..++||++||..||+|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3456799999999999999999999999942 23489999999999999999843
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.70 E-value=2.1e-08 Score=77.99 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhccCCCCCC---CCChhchHHHHHHHHHHHHHHHHHHHHHH
Q 024111 173 RREKINKKMRCLQDLVPGCHK---DMGMAGMLEEIINYVHSLQNQVEFLSMEL 222 (272)
Q Consensus 173 RRekIner~~~Lr~LVP~~~K---~mdKAsiL~eAIdYIk~LQ~qV~~L~~~~ 222 (272)
-|..||++|.+|..|||.+.. +.+|++||..|||||+.||.+++.+....
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999997642 46899999999999999999888887543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.47 E-value=3.8e-08 Score=73.93 Aligned_cols=46 Identities=24% Similarity=0.396 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCC--CCCCCChhchHHHHHHHHHHHHH
Q 024111 168 IAERVRREKINKKMRCLQDLVPG--CHKDMGMAGMLEEIINYVHSLQN 213 (272)
Q Consensus 168 ~aERrRRekIner~~~Lr~LVP~--~~K~mdKAsiL~eAIdYIk~LQ~ 213 (272)
.-||+|+..||+.|..||.+||. .+++++|.-+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 35788899999999999999997 35678999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.94 E-value=1.5e-05 Score=63.55 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhccCCC--CCCCCChhchHHHHHHHHHHHHHHHHHH
Q 024111 170 ERVRREKINKKMRCLQDLVPG--CHKDMGMAGMLEEIINYVHSLQNQVEFL 218 (272)
Q Consensus 170 ERrRRekIner~~~Lr~LVP~--~~K~mdKAsiL~eAIdYIk~LQ~qV~~L 218 (272)
||.|=..||+.|..||.+||. .+++++|.-+|.-||+||..|+..++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 577888899999999999996 4667999999999999999999887653
No 19
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.34 E-value=25 Score=24.42 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 024111 206 NYVHSLQNQVEFLSMELAAA 225 (272)
Q Consensus 206 dYIk~LQ~qV~~L~~~~~a~ 225 (272)
.||..|+.+|+.|+..+...
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887654
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.01 E-value=78 Score=22.26 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024111 205 INYVHSLQNQVEFLSME 221 (272)
Q Consensus 205 IdYIk~LQ~qV~~L~~~ 221 (272)
.+|+..|+.+|+.|+..
T Consensus 22 k~~~~~Le~~v~~L~~~ 38 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDE 38 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555543
No 21
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=35.75 E-value=39 Score=28.22 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=29.2
Q ss_pred HHHHHHHhhccCCCC---CCCCChhchHHHHHHHHHHH
Q 024111 177 INKKMRCLQDLVPGC---HKDMGMAGMLEEIINYVHSL 211 (272)
Q Consensus 177 Iner~~~Lr~LVP~~---~K~mdKAsiL~eAIdYIk~L 211 (272)
|.-.|..|+.+||.- ..++-|..||..|.|++..|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 889999999999962 23467999999999998876
No 22
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=31.17 E-value=96 Score=21.18 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhchHHHHHHHHHHHHHH
Q 024111 174 REKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQ 214 (272)
Q Consensus 174 RekIner~~~Lr~LVP~~~K~mdKAsiL~eAIdYIk~LQ~q 214 (272)
++.|.+.+..-...+|.....++..- +...|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 44566666665678888665455554 67899999998753
No 23
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=28.10 E-value=46 Score=22.79 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 024111 206 NYVHSLQNQVEFLSMELAA 224 (272)
Q Consensus 206 dYIk~LQ~qV~~L~~~~~a 224 (272)
.||..|+.+|+.|+..+..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777777765543
No 24
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.11 E-value=64 Score=22.76 Aligned_cols=26 Identities=12% Similarity=0.410 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCC
Q 024111 168 IAERVRREKINKKMRCLQDLVPGCHK 193 (272)
Q Consensus 168 ~aERrRRekIner~~~Lr~LVP~~~K 193 (272)
.++|-+|...++-+..|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57888899999999999999999654
No 25
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.01 E-value=52 Score=23.46 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCc
Q 024111 205 INYVHSLQNQVEFLSMELAAACSSNDL 231 (272)
Q Consensus 205 IdYIk~LQ~qV~~L~~~~~a~~~~~~~ 231 (272)
..||..|+.+|+.|+..+....+..++
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~l 70 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPREDL 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 358999999999999888776554333
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.74 E-value=82 Score=23.97 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024111 201 LEEIINYVHSLQNQVEFLSMELAA 224 (272)
Q Consensus 201 L~eAIdYIk~LQ~qV~~L~~~~~a 224 (272)
+..||+-|.-||.+|++|+.+-..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987543
No 27
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=23.46 E-value=1.6e+02 Score=19.73 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhchHHHHHHHHHHHHHH
Q 024111 175 EKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQ 214 (272)
Q Consensus 175 ekIner~~~Lr~LVP~~~K~mdKAsiL~eAIdYIk~LQ~q 214 (272)
+.|-..++.-+..+|.....++..- +...+.||..|..+
T Consensus 46 ~~~~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 46 VAITTVVTNGKAGMPAFKGRLTDDQ-IAAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcccCCCHHH-HHHHHHHHHHhhhc
Confidence 3455555555568888755466554 67899999998653
No 28
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=23.07 E-value=1.6e+02 Score=20.13 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhchHHHHHHHHHHHHH
Q 024111 174 REKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQN 213 (272)
Q Consensus 174 RekIner~~~Lr~LVP~~~K~mdKAsiL~eAIdYIk~LQ~ 213 (272)
++.|...++.-...+|.....++..- +...|.||..|..
T Consensus 46 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 84 (90)
T 1cyi_A 46 VESIIYQVENGKGAMPAWADRLSEEE-IQAVAEYVFKQAT 84 (90)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCHHH-HHHHHHHHHhccc
Confidence 34455555555678888655455554 7889999999875
No 29
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=22.48 E-value=1.6e+02 Score=20.06 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhchHHHHHHHHHHHHH
Q 024111 174 REKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQN 213 (272)
Q Consensus 174 RekIner~~~Lr~LVP~~~K~mdKAsiL~eAIdYIk~LQ~ 213 (272)
.+.|-+.++.-...+|.....++..- +...|.||..|..
T Consensus 47 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 85 (89)
T 1c6r_A 47 LEAITYQVENGKGAMPAWSGTLDDDE-IAAVAAYVYDQAS 85 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCcCCHHH-HHHHHHHHHHHcc
Confidence 34455555555678888665455554 6789999999875
No 30
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=22.13 E-value=1.8e+02 Score=19.44 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHHHHHhhccCCCCCCCCChhchHHHHHHHHHHHHH
Q 024111 176 KINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQN 213 (272)
Q Consensus 176 kIner~~~Lr~LVP~~~K~mdKAsiL~eAIdYIk~LQ~ 213 (272)
.|.+.++.-...+|.....++..- +...+.||..|..
T Consensus 46 ~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 82 (85)
T 1gdv_A 46 AITYQVQNGKNAMPAFGGRLVDED-IEDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHH-HHHHHHHHHHHhh
Confidence 344444444567887654455554 6789999999874
No 31
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.82 E-value=83 Score=22.81 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 024111 205 INYVHSLQNQVEFLSMELAAAC 226 (272)
Q Consensus 205 IdYIk~LQ~qV~~L~~~~~a~~ 226 (272)
-.||..|+.+|+.|+..+....
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999998877654
No 32
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=20.35 E-value=41 Score=27.40 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=22.9
Q ss_pred hccCCCCCCCCChhchHHHHHHHHHHHHHHHHH
Q 024111 185 QDLVPGCHKDMGMAGMLEEIINYVHSLQNQVEF 217 (272)
Q Consensus 185 r~LVP~~~K~mdKAsiL~eAIdYIk~LQ~qV~~ 217 (272)
..++|+=....+ ...|..+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~~-~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWKD-QRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCCS-TTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcCC-HHHHHHHHHHHHHHHHHHhc
Confidence 467787444344 46899999999999998864
No 33
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.15 E-value=1.5e+02 Score=22.92 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=37.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhhccC--------------------CCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHh
Q 024111 164 DSHSIAERVRREKINKKMRCLQDLV--------------------PGCHKDMGMAGMLEEIINYVHSLQNQVEFLSMELA 223 (272)
Q Consensus 164 ~sHs~aERrRRekIner~~~Lr~LV--------------------P~~~K~mdKAsiL~eAIdYIk~LQ~qV~~L~~~~~ 223 (272)
.+|-.-|||| .+|..+|..|+.=| |..+...+...-|.++..-|..|+..+..++.-|+
T Consensus 8 ~s~LPpeqRk-kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 8 FSHLPPEQQR-KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566554 34665555554433 33322234566788888888888888888887766
Q ss_pred hc
Q 024111 224 AA 225 (272)
Q Consensus 224 a~ 225 (272)
.+
T Consensus 87 e~ 88 (98)
T 2ke4_A 87 EA 88 (98)
T ss_dssp HH
T ss_pred HH
Confidence 54
Done!