BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024112
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
GN=ESC PE=2 SV=1
Length = 311
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
Query: 124 KRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAIC 183
KR RGRPPG+ K + + S +A HV+ V+ G DI + +++++ R +
Sbjct: 86 KRPRGRPPGSKNKAKPPIIVTRDSPNA---LRSHVLEVSPGADIVESVSTYARRRGRGVS 142
Query: 184 VLSANGAISTATLRQPSS---------SGGSVTYEGRFEILCLSGSYL 222
VL NG +S TLRQP + GG VT GRFEIL L+G+ L
Sbjct: 143 VLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVL 190
>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
GN=glmU PE=3 SV=1
Length = 621
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 164 GEDIAMKLLSFSQQGP-RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYL 222
G+D+ +L F++Q P +A VLSA G++S ATLR + + E R EIL LSGS
Sbjct: 478 GQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILALSGSLC 536
Query: 223 LSGNGGSRNRSGGLSVSLASPDGRVIGG 250
G L +++A GR GG
Sbjct: 537 PDGV--------HLHLAVADAQGRTWGG 556
>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
Length = 632
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 164 GEDIAMKLLSFSQQGP-RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGS 220
G+D+ +L ++Q P +A VLSA G++S ATLR +G + E R EIL LSGS
Sbjct: 480 GQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILALSGS 536
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio
GN=pds5a PE=2 SV=1
Length = 1320
Score = 37.4 bits (85), Expect = 0.13, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 29/114 (25%)
Query: 24 SGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGS------TIGSTLSVDPSSAISPHGVNVT 77
S +G+ S + P P +N S S +G I +SV A P G
Sbjct: 1161 SETGSNASTNSQPS-SPATNKSRDVSSEVGARENEENPVITKAVSVKKEEAAQPSG---- 1215
Query: 78 ASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPP 131
RKR P G + SVS +PS + P P K RGRPP
Sbjct: 1216 ------------RKRAAPASDGTENSVSS--NPSAGSQP----PLNKPRRGRPP 1251
>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=orc4 PE=1 SV=1
Length = 972
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 34 GSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRG 93
G P +HPL P +Q + G + + +D + I A++ + +P KR RG
Sbjct: 152 GRPRLHPL--PVVQPSVDEGTTQNNLQMGLDEPNIIEGFA---EGHANLSELKP-KRGRG 205
Query: 94 RPRKYGPD--GSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSS 141
RPRK P+ S LSP V + P KRGRGRPP +Q++++
Sbjct: 206 RPRKIKPEEGSSSQNGLSPLV------VLPA-KRGRGRPPLHRSEQKIAN 248
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 90 RKRGRPRKYGP----DGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGES 145
R+RGRPRKY P +GS P KR RGRPP + L +
Sbjct: 101 RRRGRPRKYPPKPIDEGS----------------EPIIKRKRGRPPKIKSSSPSTKLDDP 144
Query: 146 LSGSAGMG 153
L G G
Sbjct: 145 LKPKRGRG 152
>sp|O33641|ICSP_SHIFL Outer membrane protease IcsP OS=Shigella flexneri GN=icsP PE=2 SV=2
Length = 315
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 209 EGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDG-RVIG 249
E R+ + GSY+ S NGGSRN+ G A P G R IG
Sbjct: 156 ESRYSFNAMGGSYIYSENGGSRNKKG------AHPSGERTIG 191
>sp|Q80X44|ZBT24_MOUSE Zinc finger and BTB domain-containing protein 24 OS=Mus musculus
GN=Zbtb24 PE=1 SV=1
Length = 710
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 64 DPSSAISPHGVNVTAS----ASMPQSEPVKRKRGRPRK 97
D SA P +N T + S +++P+KRKRGRPRK
Sbjct: 130 DNHSAPKPPALNCTGTPVVVISNKKNDPLKRKRGRPRK 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,870,960
Number of Sequences: 539616
Number of extensions: 5054399
Number of successful extensions: 14471
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 13952
Number of HSP's gapped (non-prelim): 697
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)