Query 024112
Match_columns 272
No_of_seqs 238 out of 462
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 99.9 2.5E-26 8.4E-31 191.8 14.9 108 154-270 2-110 (142)
2 2hx0_A Putative DNA-binding pr 99.9 2.5E-26 8.7E-31 194.2 14.9 113 149-270 13-126 (154)
3 2dt4_A Hypothetical protein PH 99.9 1.3E-26 4.3E-31 193.1 10.4 110 155-270 10-122 (143)
4 2h6l_A Hypothetical protein; N 99.9 5.1E-26 1.7E-30 190.0 9.6 110 155-271 10-122 (146)
5 3htn_A Putative DNA binding pr 99.9 2.8E-25 9.6E-30 186.9 11.3 110 155-269 16-128 (149)
6 3hwu_A Putative DNA-binding pr 99.9 2.8E-22 9.6E-27 168.1 12.3 110 155-269 13-125 (147)
7 2ezd_A High mobility group pro 97.2 0.00014 4.9E-09 44.8 2.1 17 121-137 2-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 66.4 1.7 6E-05 35.0 1.0 14 88-101 3-16 (140)
9 4i95_A Putative uncharacterize 58.8 9.1 0.00031 32.1 4.0 34 181-216 37-70 (142)
10 4gzv_A Hypothetical protein; A 46.4 19 0.00064 30.2 3.9 34 181-216 37-70 (142)
11 1t3g_A X-linked interleukin-1 42.3 18 0.00061 29.6 3.2 28 161-188 51-78 (159)
12 3fcg_A F1 capsule-anchoring pr 40.6 32 0.0011 26.4 4.2 43 191-247 26-73 (90)
13 1xv2_A ALDC, hypothetical prot 40.2 1.2E+02 0.0043 26.8 8.6 97 164-265 96-203 (237)
14 1fyx_A TOLL-like receptor 2; b 32.0 24 0.00083 28.3 2.4 29 160-188 43-71 (149)
15 2j67_A TOLL like receptor 10; 30.4 27 0.00091 29.2 2.5 29 160-188 73-101 (178)
16 3h16_A TIR protein; bacteria T 20.5 63 0.0022 25.7 2.8 32 160-191 56-87 (154)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.94 E-value=2.5e-26 Score=191.80 Aligned_cols=108 Identities=23% Similarity=0.319 Sum_probs=97.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhCCc-eEEEEeeeceeeeEEEecCCCCCCceeEeeceEEEEeeceeeeCCCCCCCCC
Q 024112 154 FTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNR 232 (272)
Q Consensus 154 ~~phVIrV~~GEDV~~kI~~faqq~~~-aicILSa~GsVSnVTLRqp~s~~~tvt~eG~FEILSLsGt~~~~~~~~~~~~ 232 (272)
|++|++||++||||.++|.+||+++++ +.||++++|++++++||+++.. .+++|+|+|||+||+|||.+. .
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-~------ 73 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-H------ 73 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-C------
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-C------
Confidence 789999999999999999999999886 8999999999999999999964 478899999999999999985 1
Q ss_pred CCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEcc
Q 024112 233 SGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCL 270 (272)
Q Consensus 233 ~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~ 270 (272)
.||||+++|+||+|+||||.+..+...++||++..|.
T Consensus 74 -~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~ 110 (142)
T 2p6y_A 74 -CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYP 110 (142)
T ss_dssp -EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECT
T ss_pred -CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEcc
Confidence 5999999999999999999964555789999998764
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.94 E-value=2.5e-26 Score=194.22 Aligned_cols=113 Identities=18% Similarity=0.314 Sum_probs=101.2
Q ss_pred CCCCCceEEEEEecCCCcHHHHHHHHHHhCCc-eEEEEeeeceeeeEEEecCCCCCCceeEeeceEEEEeeceeeeCCCC
Q 024112 149 SAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNG 227 (272)
Q Consensus 149 ~~g~~~~phVIrV~~GEDV~~kI~~faqq~~~-aicILSa~GsVSnVTLRqp~s~~~tvt~eG~FEILSLsGt~~~~~~~ 227 (272)
+.++.+++|++||++||||+++|.+||+++++ +.|||+++|++++++||+++... +++|+|+|||+||+|||++. .
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-~- 89 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT-G- 89 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT-E-
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC-C-
Confidence 56678999999999999999999999998885 89999999999999999998644 78899999999999999985 1
Q ss_pred CCCCCCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEcc
Q 024112 228 GSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCL 270 (272)
Q Consensus 228 ~~~~~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~ 270 (272)
.||||+|+|.||+|+||||.+..+...++||++..|.
T Consensus 90 ------~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~ 126 (154)
T 2hx0_A 90 ------EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP 126 (154)
T ss_dssp ------EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred ------CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEcc
Confidence 5999999999999999999975555589999998763
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.94 E-value=1.3e-26 Score=193.11 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=97.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN 231 (272)
Q Consensus 155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~~~ 231 (272)
++|++||++||||+++|.+||+++++..|+++++|++++|+||+++... ..++++|+|||+||+|||.+.++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~---- 85 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE---- 85 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence 6999999999999999999999999876677999999999999997644 368899999999999999997542
Q ss_pred CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEcc
Q 024112 232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCL 270 (272)
Q Consensus 232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~ 270 (272)
++.||||+|+|+||+|+||||...+ .. ++||++..|.
T Consensus 86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~ 122 (143)
T 2dt4_A 86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELK 122 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEE
T ss_pred ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcC
Confidence 6789999999999999999999777 45 8889888764
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.93 E-value=5.1e-26 Score=190.04 Aligned_cols=110 Identities=20% Similarity=0.218 Sum_probs=97.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN 231 (272)
Q Consensus 155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~~~ 231 (272)
++|++||++||||+++|.+||+++++..|+++++|++++++||+++... .+++++|+|||+||+|||.+.++ .
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg----~ 85 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K 85 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----C
Confidence 5999999999999999999999998765556999999999999998655 37889999999999999999654 2
Q ss_pred CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccc
Q 024112 232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCLS 271 (272)
Q Consensus 232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~~ 271 (272)
++.||||+|+ .||+|+||||.+.+| .++||++..|..
T Consensus 86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~ 122 (146)
T 2h6l_A 86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSG 122 (146)
T ss_dssp EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBS
T ss_pred ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCC
Confidence 6789999999 999999999998776 699999988753
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.92 E-value=2.8e-25 Score=186.93 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=97.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN 231 (272)
Q Consensus 155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~~~ 231 (272)
+.+++||++||||+++|.+||+++++..|+++++|++++|+||+++... ..++|+|+|||+||+||+++.++ .
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~ 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence 6899999999999999999999999877777999999999999987533 26789999999999999999754 2
Q ss_pred CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEc
Q 024112 232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLC 269 (272)
Q Consensus 232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF 269 (272)
+..||||+|+|+||+|+||||... ++..++||++.-+
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~ 128 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDY 128 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEEC
T ss_pred ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEc
Confidence 678999999999999999999977 5578889998754
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.88 E-value=2.8e-22 Score=168.11 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=95.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN 231 (272)
Q Consensus 155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~~~ 231 (272)
+-+++||++||||+++|.+||+++++..++++++|++++++|+.++... ...+++ ++||+||+||+++.++ .
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence 3589999999999999999999999987888999999999999887533 256788 8999999999998664 2
Q ss_pred CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEc
Q 024112 232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLC 269 (272)
Q Consensus 232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF 269 (272)
++.|||++++|.||+|+||||....|.+.++||++..+
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~ 125 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc
Confidence 67899999999999999999997766656999998753
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.22 E-value=0.00014 Score=44.76 Aligned_cols=17 Identities=59% Similarity=0.954 Sum_probs=14.9
Q ss_pred CcCcCCCCCCCCCCCCc
Q 024112 121 PTQKRGRGRPPGTGRKQ 137 (272)
Q Consensus 121 ~~~kr~RGRP~GS~nK~ 137 (272)
+..||+||||.|||||.
T Consensus 2 ptpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKG 18 (26)
T ss_dssp CSCCCCSSCCTTCCCCS
T ss_pred CCCcCCCCCcCcccccC
Confidence 45799999999999994
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=66.40 E-value=1.7 Score=35.00 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=6.2
Q ss_pred ccccCCCCCCCCCC
Q 024112 88 VKRKRGRPRKYGPD 101 (272)
Q Consensus 88 ~KkKRGRPRKY~pd 101 (272)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 47999999999876
No 9
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=58.81 E-value=9.1 Score=32.09 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=30.0
Q ss_pred eEEEEeeeceeeeEEEecCCCCCCceeEeeceEEEE
Q 024112 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILC 216 (272)
Q Consensus 181 aicILSa~GsVSnVTLRqp~s~~~tvt~eG~FEILS 216 (272)
.+=|||.-|+..|++++ ++ ++.+++.+|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~-~~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIR-PG-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECC-TT-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEe-cC-CCcEEEEeEEEEecC
Confidence 67799999999999999 33 577999999999997
No 10
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=46.37 E-value=19 Score=30.22 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=29.1
Q ss_pred eEEEEeeeceeeeEEEecCCCCCCceeEeeceEEEE
Q 024112 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILC 216 (272)
Q Consensus 181 aicILSa~GsVSnVTLRqp~s~~~tvt~eG~FEILS 216 (272)
..=|||.-|+..|+++..- ++.+++..|.||+.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~--~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPG--ADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTT--SCCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCC--CCcEEEEeEEEEecC
Confidence 5779999999999999553 256899999999997
No 11
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=42.26 E-value=18 Score=29.60 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=25.5
Q ss_pred ecCCCcHHHHHHHHHHhCCceEEEEeee
Q 024112 161 VAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (272)
Q Consensus 161 V~~GEDV~~kI~~faqq~~~aicILSa~ 188 (272)
+.+|++|.+.|.+..++-.+.|+|||-.
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 6799999999999999999999999864
No 12
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=40.59 E-value=32 Score=26.39 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=28.4
Q ss_pred eeeEEEecCCCCCCceeEe-----eceEEEEeeceeeeCCCCCCCCCCCceEEEEeCCCCeE
Q 024112 191 ISTATLRQPSSSGGSVTYE-----GRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRV 247 (272)
Q Consensus 191 VSnVTLRqp~s~~~tvt~e-----G~FEILSLsGt~~~~~~~~~~~~~~hLhISLAg~dGqV 247 (272)
=+.|+|+|-+ .+.|+ |+|||--|.-+ . ..+-|.|.+-+.||++
T Consensus 26 ~A~V~v~qnG----~~iy~~~VppGpF~I~dl~~~----~------~~Gdl~V~v~eadG~~ 73 (90)
T 3fcg_A 26 QARVEVLRDG----YTVSNELVPSGPFELANLPLG----G------GSGELKVIIHESDGTK 73 (90)
T ss_dssp SEEEEEESSS----CEEEEEEECSEEEEECCCC-------------CCEEEEEEEECTTSCE
T ss_pred CcEEEEEECC----EEEEEeEeCCCCeEEcCCccc----C------CceeEEEEEEECCCCE
Confidence 3678889853 44554 99999665321 1 1246999999999875
No 13
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=40.17 E-value=1.2e+02 Score=26.78 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=58.3
Q ss_pred CCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCCC-------ceeEeeceEEEEeecee----eeCCCCCCCCC
Q 024112 164 GEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGG-------SVTYEGRFEILCLSGSY----LLSGNGGSRNR 232 (272)
Q Consensus 164 GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~~-------tvt~eG~FEILSLsGt~----~~~~~~~~~~~ 232 (272)
-+++-+.|.+.. ...-.|-+-..|..++|+.|--..... .+.-+=.|+.--.+||+ +|.--.+- -
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~ 171 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--G 171 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--B
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--C
Confidence 344445555444 445678889999999999997542221 11122335555555555 55432111 1
Q ss_pred CCceEEEEeCCCCeEEeeecCcceEeecceEEE
Q 024112 233 SGGLSVSLASPDGRVIGGGVGGMLIAANNVQVT 265 (272)
Q Consensus 233 ~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVv 265 (272)
-.++|+.+-+.| +-+||||.+--+....|++-
T Consensus 172 v~G~HlHFisdD-r~~GGHVldf~~~~~~~~~~ 203 (237)
T 1xv2_A 172 SAGFHIHFADDE-RAYGGHVLDFEVDDVVVEIQ 203 (237)
T ss_dssp CSEEEEEEEETT-SSCEEEEEEEEEEEEEEEEE
T ss_pred CceeEEEEEcCC-CCCCcceEEEEecceEEEEe
Confidence 236777777655 44999999988877777763
No 14
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=32.03 E-value=24 Score=28.31 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=26.1
Q ss_pred EecCCCcHHHHHHHHHHhCCceEEEEeee
Q 024112 160 TVAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (272)
Q Consensus 160 rV~~GEDV~~kI~~faqq~~~aicILSa~ 188 (272)
.+.+|+++.+.|.+-.++-.+.|+|||-.
T Consensus 43 d~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp HCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred cCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 37899999999999999988999999864
No 15
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=30.42 E-value=27 Score=29.23 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.9
Q ss_pred EecCCCcHHHHHHHHHHhCCceEEEEeee
Q 024112 160 TVAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (272)
Q Consensus 160 rV~~GEDV~~kI~~faqq~~~aicILSa~ 188 (272)
.+.+|++|.+.|.+-.++-.+.|+|||-.
T Consensus 73 D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 73 YFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp HCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred cCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 37799999999999999888999999864
No 16
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=20.47 E-value=63 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=26.8
Q ss_pred EecCCCcHHHHHHHHHHhCCceEEEEeeecee
Q 024112 160 TVAVGEDIAMKLLSFSQQGPRAICVLSANGAI 191 (272)
Q Consensus 160 rV~~GEDV~~kI~~faqq~~~aicILSa~GsV 191 (272)
.+.+|+++.+.|.+-.++-.+.++|+|-.=.-
T Consensus 56 ~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~ 87 (154)
T 3h16_A 56 SLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFK 87 (154)
T ss_dssp EECTTCCHHHHHHHHHTSEEEEEEEEEHHHHT
T ss_pred hCCCccHHHHHHHHHHHhCcEEEEEeCcchhc
Confidence 57899999999999888888899999965443
Done!