BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024113
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43022|YGV8_SCHPO Uncharacterized protein C354.08c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC354.08c PE=4 SV=1
Length = 865
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 29/143 (20%)
Query: 74 SWMPAALQMPEPELIDHAGLDSAVYLRIYLIGLKIFIPIACLGFAVMVPVN--WTNKTLE 131
W+ + + + + G D+ + L +F+ +A + +++P+N TNKTL
Sbjct: 73 GWIEPLWSIKVEDCLYNMGADAVISLLFSRFCRDVFLILAAICCTILIPINIVATNKTLA 132
Query: 132 HSKLKYSNIDLLSISNVPLGSNRMSSLQRFYSNLGSWAFLGNVFFKRFWTHLVMAYVFTF 191
+S + + L SI NV G+W W H+V+ YVF
Sbjct: 133 NSDSQNAYAKL-SIQNV----------------TGNWT----------WAHVVICYVFNV 165
Query: 192 WTCYVLKREYEIVAAMRLHFLAS 214
++L R Y+IV +R + S
Sbjct: 166 LVLFLLARYYQIVMRIRQRYYRS 188
>sp|Q9P1W3|TM63C_HUMAN Transmembrane protein 63C OS=Homo sapiens GN=TMEM63C PE=2 SV=1
Length = 806
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 72 FLSWMPAALQMPEPELIDHAGLDSAVYLRIYLIGLKIFIPIACL-GFAVMVPVNWTNKTL 130
F SW ++ M + +LI+ G D+ +Y+ ++ L IF+ I C+ +++P+N+T L
Sbjct: 106 FCSWFFNSITMKDEDLINKCGDDARIYI-VFQYHLIIFVLIICIPSLGIILPINYTGSVL 164
Query: 131 EHS 133
+ S
Sbjct: 165 DWS 167
>sp|Q09809|YAB9_SCHPO Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=3 SV=2
Length = 793
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 72 FLSWMPAALQMPEPELIDHAGLDSAVYLRIYLIGLKIFIPIACLGFAVMVPVN------- 124
+ W+ + +P+ + + AGLD V+L + +G+K + LG +++PVN
Sbjct: 68 YYKWLMDLVNIPDDVVQNCAGLDGYVFLLFFKMGIKFLSFASLLGVLIIMPVNKHFRGDA 127
Query: 125 WTNKTLEH-SKLKY---SNIDLLSISNVPLGSNRMS--------SLQRFYSNLGSWAFLG 172
+ N TL +K +Y S + SI P+ +N SL NL L
Sbjct: 128 FGNITLSMPAKSEYFFSSPLVKKSIVQSPIIANGSELNVGVLGPSLFNPIGNLSDIPGLP 187
Query: 173 NVFFKRFWTHLVMAYVFTFWTCYVLKREYEIVAAMRLHFLASEHRRPDQ 221
+ +++ Y + + YVL + +A +R +LA ++R D+
Sbjct: 188 QPGDGFLYLYVLFTYFISIFLLYVLFSSTKSIADIRQSYLARQNRLTDR 236
>sp|Q8CBX0|TM63C_MOUSE Transmembrane protein 63C OS=Mus musculus GN=Tmem63c PE=2 SV=1
Length = 802
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 72 FLSWMPAALQMPEPELIDHAGLDSAVYLRIYLIGLKIFIPIACL-GFAVMVPVNWTNKTL 130
F SW +L M + +LI+ G D+ +Y+ + L IF+ I C+ +++PVN+ L
Sbjct: 104 FSSWFFNSLTMRDRDLINKCGDDARIYI-TFQYHLIIFVLILCIPSLGIILPVNYIGTVL 162
Query: 131 E 131
+
Sbjct: 163 D 163
>sp|Q3TWI9|TM63B_MOUSE Transmembrane protein 63B OS=Mus musculus GN=Tmem63b PE=1 SV=1
Length = 832
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 56 TLVSKFVNLDFRSYLRFLSWMPAALQMPEPELIDHAGLDSAVYLRIYLIGLKIFIPIACL 115
T VS V+ D R F SW+ A ++ + E+ D G D+ YL + + + + L
Sbjct: 110 TSVSSSVDFDQRDN-GFCSWLTAIFRIKDDEIRDKCGGDAVHYLSFQRHIIGLLVVVGVL 168
Query: 116 GFAVMVPVNWTNKTLEHSKLKYSNIDLLSISNVPLGSNRMSSLQRFYSNLGSWAFLGNVF 175
+++PVN++ LE++ + +I+N+ G+N +
Sbjct: 169 SVGIVLPVNFSGDLLENNAYSFGRT---TIANLKSGNNLL-------------------- 205
Query: 176 FKRFWTHLVMAYVFTFWTCYVLKR 199
W H A+++ T Y ++R
Sbjct: 206 ----WLHTSFAFLYLLLTVYSMRR 225
>sp|Q5T3F8|TM63B_HUMAN Transmembrane protein 63B OS=Homo sapiens GN=TMEM63B PE=1 SV=1
Length = 832
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 56 TLVSKFVNLDFRSYLRFLSWMPAALQMPEPELIDHAGLDSAVYLRIYLIGLKIFIPIACL 115
T VS V+ D R F SW+ A ++ + E+ D G D+ YL + + + + L
Sbjct: 110 TSVSSSVDFDQRDN-GFCSWLTAIFRIKDDEIRDKCGGDAVHYLSFQRHIIGLLVVVGVL 168
Query: 116 GFAVMVPVNWTNKTLEHSKLKYSNIDLLSISNVPLGSNRMSSLQRFYSNLGSWAFLGNVF 175
+++PVN++ LE++ + +I+N+ G+N +
Sbjct: 169 SVGIVLPVNFSGDLLENNAYSFGRT---TIANLKSGNNLL-------------------- 205
Query: 176 FKRFWTHLVMAYVFTFWTCYVLKR 199
W H A+++ T Y ++R
Sbjct: 206 ----WLHTSFAFLYLLLTVYSMRR 225
>sp|Q27YG9|POLR_NORAV Replication polyprotein OS=Nora virus GN=ORF2 PE=4 SV=2
Length = 2104
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 27 ILRIQPINDRVYFPKWYLKGLRSSPLQTGTLVSKFVN 63
++R+QP + F K YL+ L++SP +TGT+ +K VN
Sbjct: 977 LIRLQPQREVENF-KVYLEDLQASPPKTGTICAKVVN 1012
>sp|O51628|HMDH_BORBU Probable 3-hydroxy-3-methylglutaryl-coenzyme A reductase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=BB_0685 PE=3 SV=1
Length = 431
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 110 IPIACLGFAVMVPVNWTNKTLEHSKLKYSNIDLLSISNVPLGSNRMSSLQRFYSNLGS 167
+PIA +V+ +N+ K LE++ L+YS ++L IS + + S + L + + +LG
Sbjct: 79 LPIATEESSVVAALNFAAKILENADLRYSLGEVLGISQIYIKSEK--DLSKIFVDLGD 134
>sp|Q12252|PHM7_YEAST Phosphate metabolism protein 7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PHM7 PE=1 SV=1
Length = 991
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 16 LSAFAFLSAFAILRIQPINDRVYFPKWYLKGLRSSPLQTGTLVSKFVNLDFRSYLRFLSW 75
L+A F+ F +LR P N RVY P+ LK +++ P + T + W
Sbjct: 19 LTAVVFVWLFLLLR--PKNRRVYEPR-SLKDIQTIPEEERTEPVP---------EGYFGW 66
Query: 76 MPAALQMPEPELIDHAGLDSAVYLR-IYLIGLKIFIPIAC-LGFAVMVPVNWTNKTLEHS 133
+ L P LI H +D LR I ++G F + C L +++PVN TN
Sbjct: 67 VEYLLSKPHSFLIQHTSVDGYFLLRYIGIVGSLSF--VGCLLLLPILLPVNATNGN---- 120
Query: 134 KLKYSNIDLLSISNVPLGSNRMSSLQRFYSNL-GSWAFLG---NVFFKRFWTHLV 184
+LLS SNV ++ RFY+++ SW F G V +K + ++V
Sbjct: 121 --NLQGFELLSFSNV-------TNKNRFYAHVFLSWIFFGLFTYVIYKELYYYVV 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,344,637
Number of Sequences: 539616
Number of extensions: 3737084
Number of successful extensions: 8264
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8253
Number of HSP's gapped (non-prelim): 23
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)