Query 024113
Match_columns 272
No_of_seqs 139 out of 775
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 31.8 75 0.0026 22.9 4.8 31 182-212 16-55 (79)
2 1pi7_A VPU protein, U ORF prot 28.3 75 0.0026 19.6 3.7 28 181-208 9-36 (36)
3 1pfi_A Major coat protein of P 21.1 1.3E+02 0.0043 19.3 3.7 28 3-30 18-45 (46)
4 2ks1_B Epidermal growth factor 20.4 1E+02 0.0035 19.8 3.3 13 19-31 26-38 (44)
5 2lxi_A RNA-binding protein 10; 19.2 22 0.00074 25.4 -0.2 13 221-233 1-13 (91)
6 2e5h_A Zinc finger CCHC-type a 18.4 41 0.0014 23.4 1.2 15 218-232 13-27 (94)
7 2l2t_A Receptor tyrosine-prote 16.6 2.3E+02 0.0077 18.2 4.9 13 19-31 25-37 (44)
8 2fc9_A NCL protein; structure 16.5 54 0.0019 23.2 1.5 15 218-232 12-26 (101)
9 2ytc_A PRE-mRNA-splicing facto 15.9 41 0.0014 22.9 0.6 15 218-232 9-23 (85)
10 4a8x_A RNA-binding protein wit 15.8 34 0.0012 23.4 0.2 14 219-232 2-15 (88)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.83 E-value=75 Score=22.88 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHh
Q 024113 182 HLVMAYVFTFWTCYVLKR---------EYEIVAAMRLHFL 212 (272)
Q Consensus 182 hvv~ayl~t~~~l~lL~~---------e~~~~v~lR~~yl 212 (272)
-++.+.+..++++.++|+ ||++|-+.|+.=-
T Consensus 16 gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~ 55 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666777777777775 8888888887653
No 2
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=28.25 E-value=75 Score=19.64 Aligned_cols=28 Identities=14% Similarity=0.040 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024113 181 THLVMAYVFTFWTCYVLKREYEIVAAMR 208 (272)
Q Consensus 181 ~hvv~ayl~t~~~l~lL~~e~~~~v~lR 208 (272)
+-++.+.+..+.+.-..+.||++..+.|
T Consensus 9 valivalIiaIVVWtiv~ieYrk~~kQ~ 36 (36)
T 1pi7_A 9 VALVVAIIIAIVVWSIVIIEGRGGKKKK 36 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345566677777777889999876543
No 3
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=21.07 E-value=1.3e+02 Score=19.34 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=20.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 024113 3 TLGDIGVAATINILSAFAFLSAFAILRI 30 (272)
Q Consensus 3 ~~~~~~tsl~in~~i~~~~lllF~~LR~ 30 (272)
+.+++.+.+.=.++|-++.=++|.++||
T Consensus 18 Dm~si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 18 DMKAIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666666667777777788999995
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.44 E-value=1e+02 Score=19.82 Aligned_cols=13 Identities=15% Similarity=0.071 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhcC
Q 024113 19 FAFLSAFAILRIQ 31 (272)
Q Consensus 19 ~~~lllF~~LR~r 31 (272)
++.++.|.++|+|
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4445667777765
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=19.22 E-value=22 Score=25.38 Aligned_cols=13 Identities=0% Similarity=-0.092 Sum_probs=11.2
Q ss_pred cceEEeccCCCcc
Q 024113 221 QFTSFACIIHNFE 233 (272)
Q Consensus 221 ~rTVlV~~IP~~~ 233 (272)
+++|+|.|||...
T Consensus 1 S~~i~v~nLp~~~ 13 (91)
T 2lxi_A 1 SNIVMLRMLPQAA 13 (91)
T ss_dssp CCEEEEETCCSSC
T ss_pred CCEEEEeCCCCCC
Confidence 5799999999973
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.43 E-value=41 Score=23.43 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=12.8
Q ss_pred CCccceEEeccCCCc
Q 024113 218 RPDQFTSFACIIHNF 232 (272)
Q Consensus 218 ~~~~rTVlV~~IP~~ 232 (272)
.+..++|.|.+||..
T Consensus 13 ~~~~~~l~V~nlp~~ 27 (94)
T 2e5h_A 13 APSKSTVYVSNLPFS 27 (94)
T ss_dssp CCCTTSEEEESCCTT
T ss_pred CCCCCEEEEECCCCC
Confidence 456799999999986
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=16.60 E-value=2.3e+02 Score=18.19 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhcC
Q 024113 19 FAFLSAFAILRIQ 31 (272)
Q Consensus 19 ~~~lllF~~LR~r 31 (272)
++.++.|.++|+|
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4456667778865
No 8
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.54 E-value=54 Score=23.20 Aligned_cols=15 Identities=7% Similarity=-0.157 Sum_probs=12.7
Q ss_pred CCccceEEeccCCCc
Q 024113 218 RPDQFTSFACIIHNF 232 (272)
Q Consensus 218 ~~~~rTVlV~~IP~~ 232 (272)
....++|.|.+||..
T Consensus 12 ~~~~~~l~V~nLp~~ 26 (101)
T 2fc9_A 12 SGESKTLVLSNLSYS 26 (101)
T ss_dssp SCCCSEEEEESCCTT
T ss_pred CCCCCEEEEeCCCCC
Confidence 346799999999987
No 9
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.89 E-value=41 Score=22.94 Aligned_cols=15 Identities=7% Similarity=-0.097 Sum_probs=12.9
Q ss_pred CCccceEEeccCCCc
Q 024113 218 RPDQFTSFACIIHNF 232 (272)
Q Consensus 218 ~~~~rTVlV~~IP~~ 232 (272)
....+||.|.+||..
T Consensus 9 ~~~~~~l~V~~l~~~ 23 (85)
T 2ytc_A 9 DKTITTLYVGGLGDT 23 (85)
T ss_dssp CSSCCCEEEECCTTT
T ss_pred CCCccEEEEcCCCCC
Confidence 456799999999987
No 10
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=15.85 E-value=34 Score=23.42 Aligned_cols=14 Identities=0% Similarity=-0.254 Sum_probs=12.1
Q ss_pred CccceEEeccCCCc
Q 024113 219 PDQFTSFACIIHNF 232 (272)
Q Consensus 219 ~~~rTVlV~~IP~~ 232 (272)
...+||.|.|||..
T Consensus 2 ~~~~~l~V~nlp~~ 15 (88)
T 4a8x_A 2 MKPTKVHIGRLTRN 15 (88)
T ss_dssp CCCCEEEEECCCTT
T ss_pred CCCCEEEEeCCCCC
Confidence 45689999999987
Done!