Query 024113
Match_columns 272
No_of_seqs 139 out of 775
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 18:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024113.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024113hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b0ga1 d.58.7.1 (A:1-83) Spli 44.2 3.5 0.00026 27.6 1.1 17 217-233 4-20 (83)
2 d2cqba1 d.58.7.1 (A:1-89) Pept 28.7 6.5 0.00047 26.5 0.4 14 219-232 3-16 (89)
3 d2adca2 d.58.7.1 (A:444-531) P 24.0 7.8 0.00057 25.9 0.0 15 219-233 8-22 (88)
4 d1rk8a_ d.58.7.1 (A:) RNA-bind 23.6 11 0.00078 25.3 0.7 17 217-233 3-19 (88)
5 d1zh5a2 d.58.7.1 (A:105-189) L 23.5 7.7 0.00056 26.0 -0.1 14 219-232 4-17 (85)
6 d1x4ha1 d.58.7.1 (A:8-105) RNA 21.4 11 0.00079 25.4 0.4 15 219-233 6-20 (98)
7 d1whya_ d.58.7.1 (A:) Putative 20.3 11 0.00077 25.8 0.1 16 218-233 14-29 (97)
8 d1wf0a_ d.58.7.1 (A:) TAR DNA- 20.1 15 0.0011 24.4 1.0 15 219-233 3-17 (88)
9 d2cq1a1 d.58.7.1 (A:51-138) Po 20.0 18 0.0013 23.9 1.3 15 218-232 5-19 (88)
10 d1wg1a_ d.58.7.1 (A:) Probable 19.7 14 0.001 24.7 0.7 14 220-233 4-17 (88)
No 1
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}
Probab=44.20 E-value=3.5 Score=27.57 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=14.1
Q ss_pred CCCccceEEeccCCCcc
Q 024113 217 RRPDQFTSFACIIHNFE 233 (272)
Q Consensus 217 ~~~~~rTVlV~~IP~~~ 233 (272)
..+.++||.|.|||...
T Consensus 4 ~~pP~~tl~V~nLp~~~ 20 (83)
T d2b0ga1 4 EQPPNQILFLTNLPEET 20 (83)
T ss_dssp CCSCCSEEEEESCCTTC
T ss_pred CCCCCCEEEEECCCCCC
Confidence 45678999999999973
No 2
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.65 E-value=6.5 Score=26.49 Aligned_cols=14 Identities=0% Similarity=-0.140 Sum_probs=12.1
Q ss_pred CccceEEeccCCCc
Q 024113 219 PDQFTSFACIIHNF 232 (272)
Q Consensus 219 ~~~rTVlV~~IP~~ 232 (272)
.+.|||.|.|||..
T Consensus 3 ~~~~tlfV~nLp~~ 16 (89)
T d2cqba1 3 TTKRVLYVGGLAEE 16 (89)
T ss_dssp CCCSCEEEESCCSS
T ss_pred CCCcEEEEeCCCCc
Confidence 35699999999987
No 3
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.96 E-value=7.8 Score=25.89 Aligned_cols=15 Identities=20% Similarity=-0.031 Sum_probs=12.9
Q ss_pred CccceEEeccCCCcc
Q 024113 219 PDQFTSFACIIHNFE 233 (272)
Q Consensus 219 ~~~rTVlV~~IP~~~ 233 (272)
+.++||.|.|||...
T Consensus 8 pPs~tL~V~NLp~~~ 22 (88)
T d2adca2 8 PPSATLHLSNIPPSV 22 (88)
T ss_dssp CSCSEEEEECCCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 567999999999973
No 4
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.64 E-value=11 Score=25.28 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.2
Q ss_pred CCCccceEEeccCCCcc
Q 024113 217 RRPDQFTSFACIIHNFE 233 (272)
Q Consensus 217 ~~~~~rTVlV~~IP~~~ 233 (272)
.+.+.++|.|.|||...
T Consensus 3 ~s~~~~~l~V~nL~~~~ 19 (88)
T d1rk8a_ 3 RSVEGWILFVTSIHEEA 19 (88)
T ss_dssp CCC-CEEEEEESCCTTC
T ss_pred CCCCCCEEEEeCCCCCC
Confidence 45677999999999973
No 5
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.52 E-value=7.7 Score=25.98 Aligned_cols=14 Identities=0% Similarity=-0.244 Sum_probs=12.2
Q ss_pred CccceEEeccCCCc
Q 024113 219 PDQFTSFACIIHNF 232 (272)
Q Consensus 219 ~~~rTVlV~~IP~~ 232 (272)
.++|||.|.|||..
T Consensus 4 ~~~rtvfV~nlp~~ 17 (85)
T d1zh5a2 4 VKNRSVYIKGFPTD 17 (85)
T ss_dssp HHTTEEEEECCCTT
T ss_pred CCcCEEEEECCCCC
Confidence 35799999999997
No 6
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.38 E-value=11 Score=25.36 Aligned_cols=15 Identities=13% Similarity=-0.077 Sum_probs=12.6
Q ss_pred CccceEEeccCCCcc
Q 024113 219 PDQFTSFACIIHNFE 233 (272)
Q Consensus 219 ~~~rTVlV~~IP~~~ 233 (272)
...+||.|.|||...
T Consensus 6 ~~~~tlfV~nLp~~~ 20 (98)
T d1x4ha1 6 TEGKTVFIRNLSFDS 20 (98)
T ss_dssp CCCCCEEEESCCTTC
T ss_pred CCCCEEEEcCCCCcC
Confidence 457999999999873
No 7
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.28 E-value=11 Score=25.81 Aligned_cols=16 Identities=0% Similarity=-0.251 Sum_probs=13.2
Q ss_pred CCccceEEeccCCCcc
Q 024113 218 RPDQFTSFACIIHNFE 233 (272)
Q Consensus 218 ~~~~rTVlV~~IP~~~ 233 (272)
.+.++||.|.|||...
T Consensus 14 ~~Ps~tl~V~nLp~~~ 29 (97)
T d1whya_ 14 ANPTTRLWVGGLGPNT 29 (97)
T ss_dssp CCCCSCEEEECCCSSC
T ss_pred CCCCCEEEEcCCCCCC
Confidence 3567999999999973
No 8
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.07 E-value=15 Score=24.41 Aligned_cols=15 Identities=7% Similarity=-0.197 Sum_probs=12.4
Q ss_pred CccceEEeccCCCcc
Q 024113 219 PDQFTSFACIIHNFE 233 (272)
Q Consensus 219 ~~~rTVlV~~IP~~~ 233 (272)
..+++|.|.|||...
T Consensus 3 ~~s~~lfV~nLp~~~ 17 (88)
T d1wf0a_ 3 SGSSGVFVGRCTGDM 17 (88)
T ss_dssp SCCCEEEEESCCSSS
T ss_pred CCCCEEEEeCCCCCC
Confidence 357999999999873
No 9
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02 E-value=18 Score=23.93 Aligned_cols=15 Identities=0% Similarity=-0.297 Sum_probs=12.9
Q ss_pred CCccceEEeccCCCc
Q 024113 218 RPDQFTSFACIIHNF 232 (272)
Q Consensus 218 ~~~~rTVlV~~IP~~ 232 (272)
.+.++||.|.+||..
T Consensus 5 ~~Ps~~l~V~nLp~~ 19 (88)
T d2cq1a1 5 GAPSRVLHIRKLPGE 19 (88)
T ss_dssp SSCCSEEEEESCCTT
T ss_pred CCCCCEEEEeCCCCC
Confidence 456799999999997
No 10
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.73 E-value=14 Score=24.66 Aligned_cols=14 Identities=0% Similarity=-0.254 Sum_probs=11.7
Q ss_pred ccceEEeccCCCcc
Q 024113 220 DQFTSFACIIHNFE 233 (272)
Q Consensus 220 ~~rTVlV~~IP~~~ 233 (272)
.++||.|.|||...
T Consensus 4 ~s~~i~V~nLp~~~ 17 (88)
T d1wg1a_ 4 GSSGILVKNLPQDS 17 (88)
T ss_dssp CCCCEEEESCCSSC
T ss_pred CCCEEEEeCCCCcc
Confidence 45899999999873
Done!