BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024114
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72
           P +   CRICH E  +  + L  PC C+G++ F H+ C+Q+W        CE+C  E+
Sbjct: 11 TPSSQDICRICHCEGDDE-SPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 33.1 bits (74), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68
          C IC+EE     N     C C+G ++  HR C+  W     NT C+IC
Sbjct: 9  CWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQIC 53


>pdb|2WQS|A Chain A, Crystal Structure Of The C-Terminal Domain Of
           Streptococcus Gordonii Surface Protein Sspb
          Length = 356

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 59  EKGNTTCEICLQEYGPGYTAPSKKSQLIEAA-VTIRDSLQI 98
           EKGN    + +Q+Y     AP K   L++ A +T++ + Q+
Sbjct: 94  EKGNQVSGVSVQQYDSLEAAPKKVQDLLKKANITVKGAFQL 134


>pdb|2WZA|A Chain A, Two Intramolecular Isopeptide Bonds Are Identified In The
           Crystal Structure Of The Streptococcus Gordonii Sspb C-
           Terminal Domain
          Length = 374

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 59  EKGNTTCEICLQEYGPGYTAPSKKSQLIEAA-VTIRDSLQI 98
           EKGN    + +Q+Y     AP K   L++ A +T++ + Q+
Sbjct: 112 EKGNQVSGVSVQQYDSLEAAPKKVQDLLKKANITVKGAFQL 152


>pdb|2WOY|A Chain A, Crystal Structure Of The C-Terminal Domain Of
           Streptococcus Gordonii Surface Protein Sspb
          Length = 356

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 59  EKGNTTCEICLQEYGPGYTAPSKKSQLIEAA-VTIRDSLQI 98
           EKGN    + +Q+Y     AP K   L++ A +T++ + Q+
Sbjct: 94  EKGNQVSGVSVQQYDSLEAAPKKVQDLLKKANITVKGAFQL 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,823,628
Number of Sequences: 62578
Number of extensions: 228856
Number of successful extensions: 657
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 8
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)