Query 024114
Match_columns 272
No_of_seqs 211 out of 762
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 3.3E-42 7.1E-47 284.3 9.1 116 74-225 1-118 (118)
2 KOG1609 Protein involved in mR 99.8 1.4E-19 3.1E-24 163.0 3.2 203 11-245 71-277 (323)
3 PHA02825 LAP/PHD finger-like p 99.7 2.2E-18 4.8E-23 149.1 7.9 62 12-77 2-63 (162)
4 smart00744 RINGv The RING-vari 99.7 1E-17 2.2E-22 118.9 2.8 49 20-69 1-49 (49)
5 PF12906 RINGv: RING-variant d 99.7 1.4E-17 3.1E-22 117.2 1.5 47 21-68 1-47 (47)
6 PHA02862 5L protein; Provision 99.6 1.6E-16 3.4E-21 136.2 3.7 53 18-74 2-54 (156)
7 KOG3053 Uncharacterized conser 99.5 1.5E-14 3.2E-19 133.7 3.2 70 12-81 14-90 (293)
8 COG5183 SSM4 Protein involved 99.4 6.6E-14 1.4E-18 144.3 3.6 61 12-73 6-66 (1175)
9 PF13639 zf-RING_2: Ring finge 97.9 6.5E-06 1.4E-10 56.0 1.8 43 20-69 2-44 (44)
10 KOG4628 Predicted E3 ubiquitin 97.6 7.3E-05 1.6E-09 72.3 4.5 50 19-74 230-279 (348)
11 COG5540 RING-finger-containing 96.9 0.00064 1.4E-08 65.4 3.3 52 16-73 321-372 (374)
12 COG5243 HRD1 HRD ubiquitin lig 96.9 0.0021 4.7E-08 63.3 6.8 61 15-82 284-354 (491)
13 PHA02929 N1R/p28-like protein; 96.7 0.0012 2.5E-08 61.1 2.9 52 17-75 173-229 (238)
14 cd00162 RING RING-finger (Real 96.7 0.0015 3.3E-08 42.1 2.5 44 20-71 1-44 (45)
15 PF11793 FANCL_C: FANCL C-term 96.6 0.00078 1.7E-08 51.0 0.8 54 18-74 2-67 (70)
16 PF12678 zf-rbx1: RING-H2 zinc 96.6 0.0019 4.2E-08 49.0 2.9 45 18-69 19-73 (73)
17 PF13920 zf-C3HC4_3: Zinc fing 96.4 0.0023 5E-08 44.6 2.4 46 18-73 2-48 (50)
18 PLN03208 E3 ubiquitin-protein 96.2 0.004 8.8E-08 56.1 3.2 50 16-73 16-79 (193)
19 smart00184 RING Ring finger. E 96.2 0.0042 9E-08 38.5 2.3 39 21-68 1-39 (39)
20 PF12861 zf-Apc11: Anaphase-pr 96.2 0.0059 1.3E-07 48.7 3.6 54 17-74 20-83 (85)
21 PF00097 zf-C3HC4: Zinc finger 95.9 0.0061 1.3E-07 40.3 2.3 41 21-68 1-41 (41)
22 PHA02926 zinc finger-like prot 95.7 0.0085 1.8E-07 55.6 3.3 54 17-75 169-232 (242)
23 KOG0317 Predicted E3 ubiquitin 95.3 0.02 4.3E-07 54.5 4.1 53 12-74 233-285 (293)
24 KOG0802 E3 ubiquitin ligase [P 95.2 0.012 2.7E-07 59.2 2.6 49 17-72 290-340 (543)
25 KOG0828 Predicted E3 ubiquitin 94.8 0.02 4.2E-07 58.4 2.9 60 8-73 561-634 (636)
26 PF13923 zf-C3HC4_2: Zinc fing 94.0 0.034 7.3E-07 36.9 1.7 38 21-68 1-39 (39)
27 PF06679 DUF1180: Protein of u 93.8 0.072 1.6E-06 47.0 3.8 44 206-249 99-144 (163)
28 smart00504 Ubox Modified RING 93.4 0.099 2.2E-06 37.0 3.4 44 20-73 3-46 (63)
29 PF14634 zf-RING_5: zinc-RING 93.3 0.056 1.2E-06 36.9 1.9 44 20-70 1-44 (44)
30 COG5219 Uncharacterized conser 93.2 0.029 6.2E-07 61.0 0.5 55 16-74 1467-1524(1525)
31 KOG0823 Predicted E3 ubiquitin 91.8 0.21 4.6E-06 46.3 4.1 50 15-72 44-94 (230)
32 KOG0827 Predicted E3 ubiquitin 90.2 0.21 4.6E-06 49.8 2.7 47 17-69 3-52 (465)
33 KOG1734 Predicted RING-contain 89.4 0.11 2.4E-06 49.7 0.0 61 8-73 214-281 (328)
34 TIGR00599 rad18 DNA repair pro 89.1 0.25 5.4E-06 49.0 2.3 47 17-73 25-71 (397)
35 PF09026 CENP-B_dimeris: Centr 88.6 0.13 2.9E-06 42.2 0.0 8 256-263 30-37 (101)
36 PF14851 FAM176: FAM176 family 87.9 0.64 1.4E-05 40.7 3.8 19 207-225 28-46 (153)
37 PLN02189 cellulose synthase 87.6 0.65 1.4E-05 51.0 4.4 53 17-73 33-87 (1040)
38 PF13445 zf-RING_UBOX: RING-ty 87.5 0.4 8.7E-06 33.4 1.8 41 21-66 1-43 (43)
39 PF05883 Baculo_RING: Baculovi 86.7 0.28 6.1E-06 42.2 0.9 44 17-60 25-69 (134)
40 COG5194 APC11 Component of SCF 86.2 0.59 1.3E-05 37.5 2.4 26 46-73 56-81 (88)
41 PLN02436 cellulose synthase A 85.1 1 2.2E-05 49.8 4.2 55 17-75 35-91 (1094)
42 KOG0804 Cytoplasmic Zn-finger 84.9 0.31 6.8E-06 49.3 0.3 44 17-69 174-218 (493)
43 PF14570 zf-RING_4: RING/Ubox 83.6 0.83 1.8E-05 33.0 2.0 46 21-73 1-48 (48)
44 KOG1493 Anaphase-promoting com 83.4 0.51 1.1E-05 37.6 0.9 29 46-74 53-82 (84)
45 KOG1785 Tyrosine kinase negati 82.3 0.47 1E-05 47.8 0.4 46 19-72 370-415 (563)
46 KOG4445 Uncharacterized conser 80.8 1 2.2E-05 43.9 2.0 51 18-73 115-186 (368)
47 KOG0825 PHD Zn-finger protein 80.6 1.2 2.6E-05 48.1 2.7 30 37-73 142-171 (1134)
48 KOG2930 SCF ubiquitin ligase, 75.8 1.6 3.4E-05 36.6 1.5 26 46-73 83-108 (114)
49 TIGR00570 cdk7 CDK-activating 75.3 2.9 6.3E-05 40.4 3.4 50 18-73 3-54 (309)
50 PF05290 Baculo_IE-1: Baculovi 74.7 2 4.4E-05 37.3 1.9 55 17-74 79-133 (140)
51 PF06210 DUF1003: Protein of u 73.7 17 0.00038 29.9 7.1 29 142-170 8-39 (108)
52 PLN02638 cellulose synthase A 71.8 3.9 8.5E-05 45.4 3.7 55 17-74 16-71 (1079)
53 KOG1832 HIV-1 Vpr-binding prot 70.9 2 4.3E-05 47.4 1.2 12 62-73 1213-1224(1516)
54 KOG4265 Predicted E3 ubiquitin 70.7 4.5 9.8E-05 39.8 3.5 51 14-73 286-336 (349)
55 KOG1002 Nucleotide excision re 70.2 3 6.5E-05 43.6 2.3 61 11-79 529-592 (791)
56 PF15227 zf-C3HC4_4: zinc fing 69.2 3 6.5E-05 28.5 1.4 40 21-68 1-42 (42)
57 KOG1645 RING-finger-containing 67.3 4.4 9.5E-05 40.9 2.7 52 17-72 3-55 (463)
58 KOG2177 Predicted E3 ubiquitin 66.8 2.4 5.2E-05 35.8 0.7 45 16-70 11-55 (386)
59 PLN02400 cellulose synthase 66.2 6.7 0.00014 43.7 4.0 56 17-75 35-91 (1085)
60 PF14812 PBP1_TM: Transmembran 65.9 2 4.3E-05 34.2 0.0 19 251-269 37-55 (81)
61 PLN02195 cellulose synthase A 65.4 6.2 0.00014 43.5 3.6 54 17-73 5-59 (977)
62 PF04564 U-box: U-box domain; 61.8 5.9 0.00013 29.7 1.9 45 20-73 6-50 (73)
63 PF08746 zf-RING-like: RING-li 60.6 5.2 0.00011 27.7 1.3 22 47-68 22-43 (43)
64 PRK12766 50S ribosomal protein 60.1 3.5 7.6E-05 38.5 0.5 16 256-271 78-93 (232)
65 COG5432 RAD18 RING-finger-cont 59.6 4 8.7E-05 39.8 0.8 47 17-73 24-70 (391)
66 KOG1039 Predicted E3 ubiquitin 59.1 6.3 0.00014 38.6 2.1 50 17-71 160-219 (344)
67 PF10272 Tmpp129: Putative tra 58.0 11 0.00025 37.1 3.7 34 37-73 307-351 (358)
68 PF14569 zf-UDP: Zinc-binding 56.5 14 0.00029 29.5 3.2 57 16-75 7-64 (80)
69 PF12794 MscS_TM: Mechanosensi 56.5 13 0.00028 35.7 3.7 37 194-231 219-257 (340)
70 PF06524 NOA36: NOA36 protein; 54.7 6.5 0.00014 37.8 1.3 45 93-137 133-185 (314)
71 PTZ00415 transmission-blocking 54.4 4.3 9.3E-05 47.4 0.1 9 122-130 63-71 (2849)
72 KOG0287 Postreplication repair 53.5 4.4 9.6E-05 40.3 0.0 45 18-72 23-67 (442)
73 PF10367 Vps39_2: Vacuolar sor 52.2 5.7 0.00012 30.5 0.5 33 17-55 77-109 (109)
74 PLN02915 cellulose synthase A 50.9 15 0.00032 40.9 3.5 56 16-74 13-69 (1044)
75 COG4420 Predicted membrane pro 50.4 74 0.0016 29.2 7.2 29 142-170 62-93 (191)
76 KOG3130 Uncharacterized conser 49.6 7.5 0.00016 39.4 0.9 14 208-221 234-247 (514)
77 PF02480 Herpes_gE: Alphaherpe 49.4 5.6 0.00012 39.9 0.0 27 209-236 360-386 (439)
78 PF08595 RXT2_N: RXT2-like, N- 49.1 9.3 0.0002 33.3 1.3 12 258-269 74-85 (149)
79 COG5175 MOT2 Transcriptional r 48.8 15 0.00032 36.8 2.8 61 6-73 2-64 (480)
80 PF01528 Herpes_glycop: Herpes 47.7 19 0.00041 35.7 3.4 17 217-233 318-334 (374)
81 KOG1941 Acetylcholine receptor 47.4 8.9 0.00019 38.8 1.1 49 17-70 364-413 (518)
82 KOG1428 Inhibitor of type V ad 46.7 17 0.00037 42.7 3.1 57 12-73 3480-3544(3738)
83 PF12273 RCR: Chitin synthesis 45.7 23 0.0005 29.2 3.1 22 212-233 7-28 (130)
84 KOG1952 Transcription factor N 45.7 19 0.00042 39.4 3.2 55 15-73 188-247 (950)
85 KOG1973 Chromatin remodeling p 45.7 7.2 0.00016 36.5 0.1 40 31-71 228-268 (274)
86 KOG1832 HIV-1 Vpr-binding prot 45.7 9.1 0.0002 42.5 0.9 10 121-130 1300-1309(1516)
87 PF04931 DNA_pol_phi: DNA poly 45.6 8.5 0.00018 40.8 0.7 7 199-205 591-597 (784)
88 PF04889 Cwf_Cwc_15: Cwf15/Cwc 43.8 11 0.00023 35.2 0.9 7 258-264 143-149 (244)
89 PF11368 DUF3169: Protein of u 43.6 44 0.00095 30.4 4.9 13 219-231 61-73 (248)
90 PF07800 DUF1644: Protein of u 42.9 35 0.00076 30.5 3.9 41 18-60 2-49 (162)
91 KOG0956 PHD finger protein AF1 41.8 18 0.00039 39.0 2.3 57 17-73 116-182 (900)
92 PF05191 ADK_lid: Adenylate ki 39.9 13 0.00029 25.0 0.7 17 63-79 2-18 (36)
93 PF03606 DcuC: C4-dicarboxylat 38.9 51 0.0011 33.0 4.9 22 204-225 195-216 (465)
94 smart00782 PhnA_Zn_Ribbon PhnA 38.6 20 0.00044 25.6 1.5 24 59-82 4-28 (47)
95 PF11874 DUF3394: Domain of un 38.0 21 0.00046 32.2 1.9 23 213-235 161-183 (183)
96 PF14941 OAF: Transcriptional 37.8 14 0.0003 34.7 0.7 48 35-82 181-234 (240)
97 PF06524 NOA36: NOA36 protein; 36.8 18 0.00039 34.9 1.2 6 37-42 117-122 (314)
98 KOG2548 SWAP mRNA splicing reg 36.4 17 0.00037 38.0 1.1 26 243-268 179-204 (653)
99 PF08507 COPI_assoc: COPI asso 36.2 1.2E+02 0.0027 25.1 6.1 10 140-149 39-48 (136)
100 PF04931 DNA_pol_phi: DNA poly 35.9 18 0.00039 38.4 1.3 7 210-216 612-618 (784)
101 PRK15091 ABC transporter outer 33.7 25 0.00055 33.1 1.8 15 216-231 208-222 (251)
102 PF04532 DUF587: Protein of un 32.9 16 0.00034 33.8 0.2 29 24-52 93-122 (215)
103 KOG1834 Calsyntenin [Extracell 31.3 24 0.00052 38.1 1.3 9 19-27 685-693 (952)
104 PF09788 Tmemb_55A: Transmembr 30.8 77 0.0017 30.2 4.4 38 126-163 183-221 (256)
105 PF12753 Nro1: Nuclear pore co 30.8 18 0.00039 36.4 0.2 25 248-272 223-249 (404)
106 COG4846 CcdC Membrane protein 29.7 1.3E+02 0.0029 26.6 5.3 24 141-164 97-120 (163)
107 KOG0320 Predicted E3 ubiquitin 29.6 48 0.0011 30.2 2.7 48 17-72 130-177 (187)
108 PF02084 Bindin: Bindin; Inte 28.7 12 0.00025 35.2 -1.3 16 244-259 158-173 (238)
109 KOG2164 Predicted E3 ubiquitin 28.7 51 0.0011 34.2 3.1 49 18-74 186-237 (513)
110 KOG3899 Uncharacterized conser 28.3 38 0.00082 33.3 1.9 27 47-73 328-365 (381)
111 PRK15049 L-asparagine permease 27.9 3.8E+02 0.0082 26.8 9.0 41 208-252 447-487 (499)
112 PF05086 Dicty_REP: Dictyostel 27.6 23 0.0005 38.5 0.4 24 244-267 886-910 (911)
113 KOG2023 Nuclear transport rece 27.5 27 0.00058 37.8 0.8 16 43-58 86-101 (885)
114 PF10628 CotE: Outer spore coa 27.4 27 0.00058 31.7 0.7 16 254-269 159-174 (182)
115 PRK10747 putative protoheme IX 27.0 2.1E+02 0.0047 27.4 6.9 19 206-224 57-75 (398)
116 KOG1100 Predicted E3 ubiquitin 26.9 36 0.00078 30.9 1.5 39 19-71 159-198 (207)
117 PHA03375 hypothetical protein; 26.9 23 0.0005 38.2 0.3 29 24-52 99-128 (844)
118 PF15539 CAF1-p150_C2: CAF1 co 26.8 43 0.00094 32.3 2.0 18 240-257 231-248 (292)
119 KOG2189 Vacuolar H+-ATPase V0 26.8 1.8E+02 0.0039 32.0 6.7 32 202-233 632-663 (829)
120 PF05009 EBV-NA3: Epstein-Barr 26.6 22 0.00047 33.8 0.0 29 241-269 212-241 (255)
121 COG5236 Uncharacterized conser 26.6 62 0.0013 32.6 3.1 63 5-75 48-110 (493)
122 KOG0802 E3 ubiquitin ligase [P 25.5 22 0.00047 36.2 -0.2 44 16-73 477-520 (543)
123 PF13894 zf-C2H2_4: C2H2-type 25.5 28 0.00061 19.3 0.4 10 64-73 2-11 (24)
124 PF05097 DUF688: Protein of un 25.2 33 0.00073 34.9 1.0 12 251-262 227-238 (446)
125 PF10669 Phage_Gp23: Protein g 25.2 1.3E+02 0.0028 25.3 4.3 31 192-224 8-38 (121)
126 PRK10929 putative mechanosensi 25.0 4.1E+02 0.009 30.2 9.3 37 194-231 692-730 (1109)
127 PF11137 DUF2909: Protein of u 25.0 3.1E+02 0.0067 20.8 6.3 19 196-214 42-60 (63)
128 PHA03283 envelope glycoprotein 24.9 65 0.0014 33.7 3.0 34 203-237 402-435 (542)
129 TIGR00993 3a0901s04IAP86 chlor 24.8 1.1E+02 0.0023 33.4 4.6 19 143-161 318-336 (763)
130 PRK10263 DNA translocase FtsK; 24.1 3.8E+02 0.0082 31.3 8.8 11 153-163 38-48 (1355)
131 PF00096 zf-C2H2: Zinc finger, 23.2 32 0.00069 19.7 0.3 11 64-74 2-12 (23)
132 PF02891 zf-MIZ: MIZ/SP-RING z 22.9 53 0.0012 23.3 1.4 36 33-71 10-50 (50)
133 PHA02608 67 prohead core prote 22.7 68 0.0015 25.6 2.1 12 221-232 26-37 (80)
134 KOG3241 Uncharacterized conser 22.4 45 0.00097 30.7 1.2 24 242-265 196-222 (227)
135 PRK11246 hypothetical protein; 22.2 1.3E+02 0.0029 28.0 4.3 15 201-215 165-179 (218)
136 PF00301 Rubredoxin: Rubredoxi 22.2 48 0.0011 23.6 1.1 17 63-79 2-18 (47)
137 PF00558 Vpu: Vpu protein; In 21.9 42 0.00091 26.8 0.8 24 205-228 6-29 (81)
138 KOG2399 K+-dependent Na+:Ca2+ 21.7 2.5E+02 0.0054 29.8 6.5 23 211-233 238-263 (605)
139 KOG0955 PHD finger protein BR1 21.0 33 0.00072 38.3 0.1 52 16-70 217-268 (1051)
140 PF12606 RELT: Tumour necrosis 20.6 1.8E+02 0.004 21.2 3.8 11 227-237 21-31 (50)
141 COG5574 PEX10 RING-finger-cont 20.3 1.1E+02 0.0025 29.3 3.5 46 17-71 214-260 (271)
142 PF01440 Gemini_AL2: Geminivir 20.3 19 0.00041 31.1 -1.5 34 33-69 31-64 (134)
143 KOG1189 Global transcriptional 20.2 48 0.001 36.3 1.1 10 161-170 773-782 (960)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=3.3e-42 Score=284.25 Aligned_cols=116 Identities=53% Similarity=0.882 Sum_probs=110.5
Q ss_pred cCccCCCCCchhhhhhhcccccccccccCCCCCCchhHHHh--hhhccccCCCccccCCCcchhhHHHHHHHHHHHHHHH
Q 024114 74 PGYTAPSKKSQLIEAAVTIRDSLQIPRREHVPRNPRLVAIA--ERLSAESHYPQCSSAAGRTAACCRSLALTFTVLLLVK 151 (272)
Q Consensus 74 ~~yt~p~~~~~~~~~~i~ir~~~~i~r~~~~~~~~~~~a~~--e~~~~~~~y~e~~~~~~~~a~~CRsvAii~m~lLLLr 151 (272)
|+||+|||+.+.++++|+||+||+++|+ |++||+++||+ |+++++++|++|++++++|++||||+|||||+|||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~--d~~~~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllR 78 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRR--DLRDPRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLR 78 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCcccccc--CccchhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999997655 58999999996 5799999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcchhhhhHHHhhhhhhcccccccccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 024114 152 HLFAVLTGNTDDYPFALVTVRICCLLARQQSLSSQVSVSFGFYVVLTLELFLQVLLLRACGIILPMYVLMRTIT 225 (272)
Q Consensus 152 hal~ii~~g~e~ysf~~~tvr~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lra~gillP~Yi~~r~~~ 225 (272)
|+++++++|+++|||++|| +++|||+||+||||||+|+|+
T Consensus 79 hal~l~~~~~~~~s~~lft----------------------------------l~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 79 HALALVTGGAEDYSFTLFT----------------------------------LLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHHHhcCCcccccHHHHH----------------------------------HHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999 999999999999999999985
No 2
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.77 E-value=1.4e-19 Score=162.96 Aligned_cols=203 Identities=22% Similarity=0.322 Sum_probs=134.5
Q ss_pred CCCCCCCCCceeEeccCcccCCC-ccccccccCCCcceecHHHHHHHHHhhCCccccccccccccCccCCCCCchhhhhh
Q 024114 11 FKSNPETTSHCRICHEEEFESCN-SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSKKSQLIEAA 89 (272)
Q Consensus 11 ~~s~se~~~~CRIC~eeeees~~-~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~yt~p~~~~~~~~~~ 89 (272)
....+...+.||||+++.++.+. +++.||.|+|+++|||+.|+++|+..|++..||+|++.|...++.+++........
T Consensus 71 ~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~ 150 (323)
T KOG1609|consen 71 LEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVR 150 (323)
T ss_pred cccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhh
Confidence 33444456899999998765322 79999999999999999999999999999999999999999988877776665555
Q ss_pred hcccccccccccCCCCCCchhHHHh--hhhccccCCCccccCCCcchhhHHHHH-HHHHHHHHHHHHHHHHhCCCCCCcc
Q 024114 90 VTIRDSLQIPRREHVPRNPRLVAIA--ERLSAESHYPQCSSAAGRTAACCRSLA-LTFTVLLLVKHLFAVLTGNTDDYPF 166 (272)
Q Consensus 90 i~ir~~~~i~r~~~~~~~~~~~a~~--e~~~~~~~y~e~~~~~~~~a~~CRsvA-ii~m~lLLLrhal~ii~~g~e~ysf 166 (272)
+...+.|..... .....+..+++. ...++...+.+.....+.++..+++++ +++.++.++++.+.+......
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 225 (323)
T KOG1609|consen 151 SGALSERTLSGM-ILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSG---- 225 (323)
T ss_pred hHhhhheeeehh-hhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHH----
Confidence 444444544332 122333333332 233344444444444455556677666 666666666666655433211
Q ss_pred hhhhhHHHhhhhhhcccccccccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcccccccCCC
Q 024114 167 ALVTVRICCLLARQQSLSSQVSVSFGFYVVLTLELFLQVLLLRACGIILPMYVLMRTITAIHNSIRREYHHVTYDDETS 245 (272)
Q Consensus 167 ~~~tvr~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lra~gillP~Yi~~r~~~~~q~~r~rq~~~~~~~~~~~ 245 (272)
+.-....++..+.++|+.+++++.+++++++.+.|.++.+.+.+......++
T Consensus 226 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (323)
T KOG1609|consen 226 ---------------------------YIFILKSLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGYLLANSLTP 277 (323)
T ss_pred ---------------------------HHHHHHHHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeEEEecccce
Confidence 0001223344477899999999999998777777777777766655444443
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.75 E-value=2.2e-18 Score=149.10 Aligned_cols=62 Identities=24% Similarity=0.610 Sum_probs=54.5
Q ss_pred CCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccCcc
Q 024114 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYT 77 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~yt 77 (272)
++.++..+.||||++++. .+.+||+|+||+||||++||++|++.+++..||+|+++|++...
T Consensus 2 ~~~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~ 63 (162)
T PHA02825 2 EDVSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKN 63 (162)
T ss_pred CCcCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEe
Confidence 355678899999998853 36799999999999999999999999999999999999987643
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.69 E-value=1e-17 Score=118.90 Aligned_cols=49 Identities=49% Similarity=1.249 Sum_probs=44.3
Q ss_pred ceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccc
Q 024114 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (272)
Q Consensus 20 ~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk 69 (272)
+||||++++ ++.++++.||+|+||++|||++||++|+.++++.+||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 599999833 3457899999999999999999999999999999999996
No 5
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.67 E-value=1.4e-17 Score=117.21 Aligned_cols=47 Identities=53% Similarity=1.247 Sum_probs=38.4
Q ss_pred eeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccc
Q 024114 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (272)
Q Consensus 21 CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEIC 68 (272)
||||+++++++ ++|++||.|+||++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~-~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED-EPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS-S-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCC-CceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 99999988764 389999999999999999999999999999999998
No 6
>PHA02862 5L protein; Provisional
Probab=99.62 E-value=1.6e-16 Score=136.20 Aligned_cols=53 Identities=26% Similarity=0.658 Sum_probs=48.1
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
...||||++++++. .+||.|+||+||||++||++|++.+++..||+|+++|.+
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 36899999987543 699999999999999999999999999999999999974
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.5e-14 Score=133.73 Aligned_cols=70 Identities=30% Similarity=0.673 Sum_probs=59.1
Q ss_pred CCCCCCCCceeEeccCcccCC-CccccccccCCCcceecHHHHHHHHHhhC------CccccccccccccCccCCCC
Q 024114 12 KSNPETTSHCRICHEEEFESC-NSLEAPCACSGTVKFAHRDCIQRWCYEKG------NTTCEICLQEYGPGYTAPSK 81 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~-~~Li~PC~C~GSlkyVH~~CL~rWl~~kg------~~~CEICk~~Y~~~yt~p~~ 81 (272)
.++.+.++.||||+..++|.. ..|++||.|+||.||||+.||.+|+.+|. ...|++|+++|.+.|+...+
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~ 90 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGP 90 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccCh
Confidence 456678899999999887643 34999999999999999999999999984 47999999999988755433
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.42 E-value=6.6e-14 Score=144.28 Aligned_cols=61 Identities=38% Similarity=0.922 Sum_probs=54.0
Q ss_pred CCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.+..++...||||+.++.+ .++|.+||+|+||+||+|++||..|+..+++.+|+|||.+|+
T Consensus 6 ~~mN~d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 6 TPMNEDKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CCCCccchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 3445567999999998765 478999999999999999999999999999999999997765
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.88 E-value=6.5e-06 Score=55.99 Aligned_cols=43 Identities=33% Similarity=0.848 Sum_probs=33.9
Q ss_pred ceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccc
Q 024114 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (272)
Q Consensus 20 ~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk 69 (272)
.|-||+++-.++......||. +..|.+|+++|++.++ +|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 699999987555555677763 7999999999998864 999995
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=7.3e-05 Score=72.34 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=42.3
Q ss_pred CceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
..|-||+|+-.+....-+.||+ +..|..|+..|+... ...|++||+.-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 7999999998776555689998 789999999999988 5679999986643
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00064 Score=65.35 Aligned_cols=52 Identities=19% Similarity=0.541 Sum_probs=39.9
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+....|-||.+.--....-++.||+ +-.|..|+.+|+.--. .+|++|+++.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~-~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYS-NKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhc-ccCCccCCCCC
Confidence 3558999998765333345799998 6799999999998322 48999997664
No 12
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0021 Score=63.32 Aligned_cols=61 Identities=25% Similarity=0.636 Sum_probs=43.4
Q ss_pred CCCCCceeEeccCcccC----------CCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccCccCCCCC
Q 024114 15 PETTSHCRICHEEEFES----------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSKK 82 (272)
Q Consensus 15 se~~~~CRIC~eeeees----------~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~yt~p~~~ 82 (272)
.+....|-||.++-..+ ..|-..||. +-.|-.||+.|+..+ .+|+||+.+.-+.-+.|-+.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERq--QTCPICr~p~ifd~~~~~~~ 354 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQ--QTCPICRRPVIFDQSSPTPA 354 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhc--cCCCcccCccccccCCCCcC
Confidence 34678999999873221 123467887 689999999999875 49999998865444444433
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.69 E-value=0.0012 Score=61.07 Aligned_cols=52 Identities=23% Similarity=0.585 Sum_probs=38.0
Q ss_pred CCCceeEeccCcccCCC-----ccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 17 TTSHCRICHEEEFESCN-----SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~-----~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
....|-||++.-.+... ....||. +..|..|+.+|+.. ..+||+|+..+...
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEE
Confidence 46899999987433210 2345665 78999999999975 45899999888643
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.65 E-value=0.0015 Score=42.06 Aligned_cols=44 Identities=36% Similarity=0.825 Sum_probs=32.6
Q ss_pred ceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccc
Q 024114 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQE 71 (272)
Q Consensus 20 ~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~ 71 (272)
.|-||++...+ .....||. +.+|..|+.+|+.. ++..|++|+..
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhC--ceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 48899877522 22455576 56899999999987 56789999864
No 15
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.58 E-value=0.00078 Score=50.96 Aligned_cols=54 Identities=19% Similarity=0.396 Sum_probs=25.4
Q ss_pred CCceeEeccCcccCCC---ccccccccCCCcceecHHHHHHHHHhhC---------Ccccccccccccc
Q 024114 18 TSHCRICHEEEFESCN---SLEAPCACSGTVKFAHRDCIQRWCYEKG---------NTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~---~Li~PC~C~GSlkyVH~~CL~rWl~~kg---------~~~CEICk~~Y~~ 74 (272)
+..|.||+....+... .+-....|. +..|..||.+|+.... .-+|+.|+++...
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4679999976432211 222334675 6899999999997631 1369999987754
No 16
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.56 E-value=0.0019 Score=48.97 Aligned_cols=45 Identities=31% Similarity=0.840 Sum_probs=30.7
Q ss_pred CCceeEeccCcccC----------CCccccccccCCCcceecHHHHHHHHHhhCCccccccc
Q 024114 18 TSHCRICHEEEFES----------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (272)
Q Consensus 18 ~~~CRIC~eeeees----------~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk 69 (272)
...|-||++.-.+. ......+|+ +..|..||.+|++.+. +|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 34599998875321 111234554 7899999999997665 999996
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.43 E-value=0.0023 Score=44.57 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=36.1
Q ss_pred CCceeEeccCcccCCCccccccccCCCcce-ecHHHHHHHHHhhCCccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlky-VH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
...|.||++... +.+..||. +. +-..|+.+|++ +..+|++|+++++
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 357999998754 45889997 45 89999999999 6679999998765
No 18
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.18 E-value=0.004 Score=56.12 Aligned_cols=50 Identities=20% Similarity=0.652 Sum_probs=39.2
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--------------hCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--------------KGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--------------kg~~~CEICk~~Y~ 73 (272)
++...|-||++... .+.++||. +.....||.+|+.. ++...|++|+..+.
T Consensus 16 ~~~~~CpICld~~~---dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVR---DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCC---CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 35688999998754 45788886 67899999999863 23568999998874
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.16 E-value=0.0042 Score=38.52 Aligned_cols=39 Identities=44% Similarity=0.999 Sum_probs=30.1
Q ss_pred eeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccc
Q 024114 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (272)
Q Consensus 21 CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEIC 68 (272)
|.||++.. .+....||. +..|..|+.+|+. .+..+|++|
T Consensus 1 C~iC~~~~---~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67898773 345788877 4689999999998 556678877
No 20
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.15 E-value=0.0059 Score=48.70 Aligned_cols=54 Identities=24% Similarity=0.438 Sum_probs=36.8
Q ss_pred CCCceeEeccCcccC---------CCccccccccCCCcceecHHHHHHHHHhh-CCcccccccccccc
Q 024114 17 TTSHCRICHEEEFES---------CNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYGP 74 (272)
Q Consensus 17 ~~~~CRIC~eeeees---------~~~Li~PC~C~GSlkyVH~~CL~rWl~~k-g~~~CEICk~~Y~~ 74 (272)
....|-||...-+.. .-+++ =+.|+ +-+|..||.+|++.. .+..|++|++++++
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 367888887643210 11111 24554 579999999999874 57899999999864
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.91 E-value=0.0061 Score=40.32 Aligned_cols=41 Identities=32% Similarity=0.861 Sum_probs=33.9
Q ss_pred eeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccc
Q 024114 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (272)
Q Consensus 21 CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEIC 68 (272)
|.||++...+. ....||. +.++..|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~--~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 77898876542 2489988 78999999999998888899987
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=95.74 E-value=0.0085 Score=55.55 Aligned_cols=54 Identities=22% Similarity=0.537 Sum_probs=40.2
Q ss_pred CCCceeEeccCccc------CCCccccccccCCCcceecHHHHHHHHHhh----CCccccccccccccC
Q 024114 17 TTSHCRICHEEEFE------SCNSLEAPCACSGTVKFAHRDCIQRWCYEK----GNTTCEICLQEYGPG 75 (272)
Q Consensus 17 ~~~~CRIC~eeeee------s~~~Li~PC~C~GSlkyVH~~CL~rWl~~k----g~~~CEICk~~Y~~~ 75 (272)
.+.+|-||++.-.+ ....+..||+ +.....|+.+|...+ ....||+|+..|...
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 56899999986322 1123667777 678999999999864 246799999998744
No 23
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.02 Score=54.54 Aligned_cols=53 Identities=34% Similarity=0.876 Sum_probs=42.1
Q ss_pred CCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
.+.++....|-+|++.-.+ +--+||. +..=-.|+..|+.+|. .|++|+..++|
T Consensus 233 ~~i~~a~~kC~LCLe~~~~---pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~p 285 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSN---PSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQP 285 (293)
T ss_pred ccCCCCCCceEEEecCCCC---CCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCC
Confidence 3455677999999998643 3579997 5667899999999987 49999988864
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.012 Score=59.22 Aligned_cols=49 Identities=29% Similarity=0.687 Sum_probs=39.0
Q ss_pred CCCceeEeccCcccCCC--ccccccccCCCcceecHHHHHHHHHhhCCcccccccccc
Q 024114 17 TTSHCRICHEEEFESCN--SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~--~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y 72 (272)
....|.||.++...+.+ +-..||. +-.|..||++|++.+ .+|++|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhhh
Confidence 36789999998654322 5678887 789999999999984 5999999843
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.02 Score=58.39 Aligned_cols=60 Identities=22% Similarity=0.508 Sum_probs=42.7
Q ss_pred eecCCCCCCCCCceeEeccCcc------c--------CCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 8 VEDFKSNPETTSHCRICHEEEF------E--------SCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 8 v~d~~s~se~~~~CRIC~eeee------e--------s~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.++++..-+....|-||...-+ + ..|-|.+||. +..|+.||++|.+..+ ..|+.|+.+.+
T Consensus 561 ~dh~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLP 634 (636)
T KOG0828|consen 561 QDHLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLP 634 (636)
T ss_pred cccccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence 3344444556789999976421 1 2345777998 6899999999998543 68999997765
No 26
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.04 E-value=0.034 Score=36.91 Aligned_cols=38 Identities=29% Similarity=0.858 Sum_probs=28.7
Q ss_pred eeEeccCcccCCCc-cccccccCCCcceecHHHHHHHHHhhCCcccccc
Q 024114 21 CRICHEEEFESCNS-LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (272)
Q Consensus 21 CRIC~eeeees~~~-Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEIC 68 (272)
|-||++...+ + ...||. +.....|+.+|++. +.+|++|
T Consensus 1 C~iC~~~~~~---~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 6789876543 4 578887 78999999999988 3689887
No 27
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=93.78 E-value=0.072 Score=46.95 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=26.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhh-hhhhcccccc-cCCCCCch
Q 024114 206 LLLRACGIILPMYVLMRTITAIHNSI-RREYHHVTYD-DETSNSDE 249 (272)
Q Consensus 206 ~~lra~gillP~Yi~~r~~~~~q~~r-~rq~~~~~~~-~~~~~~~~ 249 (272)
+++=.+..++=+|+++|++..-.+.| .|.|...... ++..|.--
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~~~Em~pL 144 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAENVEMAPL 144 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccceeecccCCCcccceeccc
Confidence 34445556677899999998443222 2677665544 55555533
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.40 E-value=0.099 Score=37.02 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=35.1
Q ss_pred ceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 20 ~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.|.||.+--. +++..||. +.+-+.|+.+|+.. +.+|++|++.+.
T Consensus 3 ~Cpi~~~~~~---~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMK---DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCC---CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 5889987653 35788874 67999999999987 458999998774
No 29
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=93.33 E-value=0.056 Score=36.90 Aligned_cols=44 Identities=25% Similarity=0.616 Sum_probs=35.9
Q ss_pred ceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccc
Q 024114 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (272)
Q Consensus 20 ~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~ 70 (272)
.|-||++...+...+++.+|. +.+..+|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 378998887444567899997 789999999999 66789999984
No 30
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.25 E-value=0.029 Score=60.97 Aligned_cols=55 Identities=22% Similarity=0.550 Sum_probs=37.7
Q ss_pred CCCCceeEeccCcc--cCCCccccccc-cCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEF--ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeee--es~~~Li~PC~-C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
....+|-||..--. +..-| -.-|. |+ .-.|-.||-+|++++++.+||+|+..+++
T Consensus 1467 sG~eECaICYsvL~~vdr~lP-skrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLP-SKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCC-ccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 35689999975321 11100 12222 33 35899999999999999999999977654
No 31
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.21 Score=46.34 Aligned_cols=50 Identities=18% Similarity=0.518 Sum_probs=40.2
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhC-Ccccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKG-NTTCEICLQEY 72 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg-~~~CEICk~~Y 72 (272)
.+..-.|-||++...+ +.+++|. +..==.||-+|+..+. ...|++||...
T Consensus 44 ~~~~FdCNICLd~akd---PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCCceeeeeeccccCC---CEEeecc-----cceehHHHHHHHhhcCCCeeCCcccccc
Confidence 4566789999998754 5899997 5666789999998875 46679999875
No 32
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.21 Score=49.77 Aligned_cols=47 Identities=23% Similarity=0.646 Sum_probs=32.3
Q ss_pred CCCceeEeccCcccCCCcc--ccccccCCCcceecHHHHHHHHHhhCC-ccccccc
Q 024114 17 TTSHCRICHEEEFESCNSL--EAPCACSGTVKFAHRDCIQRWCYEKGN-TTCEICL 69 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~L--i~PC~C~GSlkyVH~~CL~rWl~~kg~-~~CEICk 69 (272)
-...|.||-+ ..+....+ ++.|. +-+|..||.+|+..-.. +.||||+
T Consensus 3 i~A~C~Ic~d-~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 3 IMAECHICID-GRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ccceeeEecc-CCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 3568999933 32222223 33443 57999999999988654 7999999
No 33
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=0.11 Score=49.68 Aligned_cols=61 Identities=21% Similarity=0.518 Sum_probs=45.0
Q ss_pred eecCCCCCCCCCceeEeccCccc---C----CCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 8 VEDFKSNPETTSHCRICHEEEFE---S----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 8 v~d~~s~se~~~~CRIC~eeeee---s----~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.+...++..+...|-+|-..-.. + +|.-...|+ +-.|+-|++-|+.--++.+||.||.+..
T Consensus 214 ~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 214 PSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 45566777788999999643211 1 133345565 6799999999999988899999998765
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.11 E-value=0.25 Score=48.95 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=37.7
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
....|.||++.-. ++.+.||. +.....|+..|+..+ ..|++|+..+.
T Consensus 25 ~~l~C~IC~d~~~---~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~ 71 (397)
T TIGR00599 25 TSLRCHICKDFFD---VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQ 71 (397)
T ss_pred cccCCCcCchhhh---CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCccc
Confidence 4579999987653 34678987 678899999999765 38999998875
No 35
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=88.61 E-value=0.13 Score=42.22 Aligned_cols=8 Identities=100% Similarity=1.473 Sum_probs=0.0
Q ss_pred CCCCchhh
Q 024114 256 DDDDDDEE 263 (272)
Q Consensus 256 ~~~~~~~~ 263 (272)
||||||++
T Consensus 30 dDddddee 37 (101)
T PF09026_consen 30 DDDDDDEE 37 (101)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 36
>PF14851 FAM176: FAM176 family
Probab=87.89 E-value=0.64 Score=40.73 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=11.1
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 024114 207 LLRACGIILPMYVLMRTIT 225 (272)
Q Consensus 207 ~lra~gillP~Yi~~r~~~ 225 (272)
+.=.+|.+|=+.+++--++
T Consensus 28 ~gVC~GLlLtLcllV~ris 46 (153)
T PF14851_consen 28 SGVCAGLLLTLCLLVIRIS 46 (153)
T ss_pred HHHHHHHHHHHHHHHhhhe
Confidence 4455666666666655555
No 37
>PLN02189 cellulose synthase
Probab=87.56 E-value=0.65 Score=51.03 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=39.3
Q ss_pred CCCceeEeccCcc-cCCCccccccc-cCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeee-es~~~Li~PC~-C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+...|+||-++-. +.++.+...|. |. --|=+.|. ..-.+.|+..|+.||++|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 4469999987732 23455778888 63 23888998 5556668999999999998
No 38
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=87.46 E-value=0.4 Score=33.43 Aligned_cols=41 Identities=27% Similarity=0.631 Sum_probs=23.0
Q ss_pred eeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh--CCcccc
Q 024114 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCE 66 (272)
Q Consensus 21 CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k--g~~~CE 66 (272)
|-||.+-..+.+.+++.||. +-+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 66887744445667999977 578899999999976 456664
No 39
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=86.70 E-value=0.28 Score=42.19 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCCceeEeccCcccCCCccccccccCCCc-ceecHHHHHHHHHhh
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTV-KFAHRDCIQRWCYEK 60 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSl-kyVH~~CL~rWl~~k 60 (272)
...+|+||++.-.+..+...-+|.-.--+ |..|..|++||-+++
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 36899999988654345566666543222 459999999996554
No 40
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=86.18 E-value=0.59 Score=37.50 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.3
Q ss_pred ceecHHHHHHHHHhhCCccccccccccc
Q 024114 46 KFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 46 kyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.-.|.-|+.+|++.|| .|+++++.|.
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~ 81 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWV 81 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeE
Confidence 4689999999999976 8999999886
No 41
>PLN02436 cellulose synthase A
Probab=85.09 E-value=1 Score=49.80 Aligned_cols=55 Identities=24% Similarity=0.524 Sum_probs=39.9
Q ss_pred CCCceeEeccCc-ccCCCccccccc-cCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 17 TTSHCRICHEEE-FESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 17 ~~~~CRIC~eee-ees~~~Li~PC~-C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
....|+||-++- -..++.+...|+ |. --|=+.|. ..-.+.|+..|+.||++|+-.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchhhc
Confidence 456999998763 223455778888 53 23888998 555666899999999999833
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.89 E-value=0.31 Score=49.25 Aligned_cols=44 Identities=25% Similarity=0.631 Sum_probs=31.5
Q ss_pred CCCceeEeccCcccC-CCccccccccCCCcceecHHHHHHHHHhhCCccccccc
Q 024114 17 TTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (272)
Q Consensus 17 ~~~~CRIC~eeeees-~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk 69 (272)
+.+.|-+|++.-+++ ++.+-.+|. +-.|-.|+++|=.. +|++|+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR 218 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCR 218 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhh
Confidence 559999999875443 344566766 67999999999654 455554
No 43
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=83.64 E-value=0.83 Score=32.99 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=20.9
Q ss_pred eeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh--CCccccccccccc
Q 024114 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCEICLQEYG 73 (272)
Q Consensus 21 CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k--g~~~CEICk~~Y~ 73 (272)
|.+|-++.+ ..+.-..||.|. ++-|+.=|.+-+ ++..|+-|+++|+
T Consensus 1 cp~C~e~~d-~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELD-ETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccc-cCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 566766553 234568999995 455666666555 4789999999984
No 44
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.43 E-value=0.51 Score=37.58 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=25.1
Q ss_pred ceecHHHHHHHHHhhC-Ccccccccccccc
Q 024114 46 KFAHRDCIQRWCYEKG-NTTCEICLQEYGP 74 (272)
Q Consensus 46 kyVH~~CL~rWl~~kg-~~~CEICk~~Y~~ 74 (272)
.-+|.-|+.+|++.+. ...|+.|++.|.+
T Consensus 53 h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 53 HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 5799999999998875 5799999998864
No 45
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=82.32 E-value=0.47 Score=47.78 Aligned_cols=46 Identities=26% Similarity=0.686 Sum_probs=37.8
Q ss_pred CceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccc
Q 024114 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y 72 (272)
..|+||-+.+. +.-|-||. +..-..||-.|..+.+...|+.|+...
T Consensus 370 eLCKICaendK---dvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAENDK---DVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhccCC---Cccccccc-----chHHHHHHHhhcccCCCCCCCceeeEe
Confidence 67999977664 34689997 567789999999999899999999554
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=80.78 E-value=1 Score=43.92 Aligned_cols=51 Identities=22% Similarity=0.460 Sum_probs=35.5
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh---------------------CCccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK---------------------GNTTCEICLQEYG 73 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k---------------------g~~~CEICk~~Y~ 73 (272)
..+|-||+-+-.++....++||. +|.|..||.|++++- -...|++|.....
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 35666666544333334689987 799999999998762 1367999996653
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.59 E-value=1.2 Score=48.10 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=24.7
Q ss_pred cccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 37 APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 37 ~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.+|.| |.|..|+..|.+... +|++|+..|-
T Consensus 142 k~c~H-----~FC~~Ci~sWsR~aq--TCPiDR~EF~ 171 (1134)
T KOG0825|consen 142 KHTAH-----YFCEECVGSWSRCAQ--TCPVDRGEFG 171 (1134)
T ss_pred ccccc-----ccHHHHhhhhhhhcc--cCchhhhhhh
Confidence 45665 999999999987654 9999999984
No 48
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.76 E-value=1.6 Score=36.60 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=22.7
Q ss_pred ceecHHHHHHHHHhhCCccccccccccc
Q 024114 46 KFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 46 kyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+-.|.-|+.||++.++ .||+|.+...
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCccee
Confidence 5689999999999876 8999998764
No 49
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.28 E-value=2.9 Score=40.44 Aligned_cols=50 Identities=14% Similarity=0.447 Sum_probs=35.7
Q ss_pred CCceeEeccCcccC--CCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 18 TSHCRICHEEEFES--CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 18 ~~~CRIC~eeeees--~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
...|-+|....--+ ...+++||. +-+=..|+.+.+. ++...|+.|+..+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccc
Confidence 35799999864322 233778775 5567799999654 36679999998875
No 50
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=74.70 E-value=2 Score=37.29 Aligned_cols=55 Identities=20% Similarity=0.510 Sum_probs=42.3
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
..-+|-||++...|. .+..|=.|.|. +----=|.+-|-..+-...||+||+.|+.
T Consensus 79 ~lYeCnIC~etS~ee--~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEE--RFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchh--hcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 567999999987653 48999999882 22333456788877778899999999973
No 51
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.70 E-value=17 Score=29.92 Aligned_cols=29 Identities=41% Similarity=0.669 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhCC---CCCCcchhhh
Q 024114 142 LTFTVLLLVKHLFAVLTGN---TDDYPFALVT 170 (272)
Q Consensus 142 ii~m~lLLLrhal~ii~~g---~e~ysf~~~t 170 (272)
++++++++++-++++.... =|-|||.+++
T Consensus 8 ~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLn 39 (108)
T PF06210_consen 8 IIFTVFLAVWILLNILAPPRPAFDPYPFILLN 39 (108)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCccHHHHH
Confidence 5677777777777776444 2889999888
No 52
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=71.82 E-value=3.9 Score=45.36 Aligned_cols=55 Identities=20% Similarity=0.420 Sum_probs=36.5
Q ss_pred CCCceeEeccCc-ccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 17 TTSHCRICHEEE-FESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 17 ~~~~CRIC~eee-ees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
+...|+||-++- -..++.+.--|+=.| --|=+.|. ..=.+-|+..|++||++|+-
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCY-EYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCY-EYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC--Cccccchh-hhhhhcCCccCCccCCchhh
Confidence 446999998763 222344555665332 22778887 34444589999999999983
No 53
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.91 E-value=2 Score=47.38 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=8.0
Q ss_pred Cccccccccccc
Q 024114 62 NTTCEICLQEYG 73 (272)
Q Consensus 62 ~~~CEICk~~Y~ 73 (272)
..+|..|.+-+.
T Consensus 1213 vqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1213 VQTCSPLQTYLT 1224 (1516)
T ss_pred cccCcHHHHhcC
Confidence 468888877443
No 54
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.68 E-value=4.5 Score=39.80 Aligned_cols=51 Identities=25% Similarity=0.585 Sum_probs=33.6
Q ss_pred CCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.+++.+.|=||+.+.-+ .++.||+= -..=..|.+.-.-. ...|+||++++.
T Consensus 286 ~~~~gkeCVIClse~rd---t~vLPCRH----LCLCs~Ca~~Lr~q--~n~CPICRqpi~ 336 (349)
T KOG4265|consen 286 ESESGKECVICLSESRD---TVVLPCRH----LCLCSGCAKSLRYQ--TNNCPICRQPIE 336 (349)
T ss_pred cccCCCeeEEEecCCcc---eEEecchh----hehhHhHHHHHHHh--hcCCCccccchH
Confidence 34678999999988643 47888761 01223566655522 347999998875
No 55
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=70.21 E-value=3 Score=43.56 Aligned_cols=61 Identities=21% Similarity=0.540 Sum_probs=45.9
Q ss_pred CCCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh---hCCccccccccccccCccCC
Q 024114 11 FKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEYGPGYTAP 79 (272)
Q Consensus 11 ~~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~---kg~~~CEICk~~Y~~~yt~p 79 (272)
......+..+|.+|++..++ .+++-|. +-.-+.|+..++.. ..+.+|+.|.....+..+.|
T Consensus 529 ~~~enk~~~~C~lc~d~aed---~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 529 LPDENKGEVECGLCHDPAED---YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CCccccCceeecccCChhhh---hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 33444577899999998754 3788876 45668899999865 45799999998887776655
No 56
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=69.18 E-value=3 Score=28.51 Aligned_cols=40 Identities=28% Similarity=0.659 Sum_probs=26.7
Q ss_pred eeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCC--cccccc
Q 024114 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGN--TTCEIC 68 (272)
Q Consensus 21 CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~--~~CEIC 68 (272)
|-||++--. ++...+|. +-+=+.||.+|.++.+. ..|++|
T Consensus 1 CpiC~~~~~---~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 668877654 45788886 56788999999987654 588887
No 57
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.35 E-value=4.4 Score=40.93 Aligned_cols=52 Identities=19% Similarity=0.554 Sum_probs=38.6
Q ss_pred CCCceeEeccCcccC-CCccccccccCCCcceecHHHHHHHHHhhCCcccccccccc
Q 024114 17 TTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (272)
Q Consensus 17 ~~~~CRIC~eeeees-~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y 72 (272)
....|-||+++-.-+ +-.++.| .|. +..-..|+++|+.++....|++|+..-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChh
Confidence 356899999985433 3346666 442 578899999999877789999998653
No 58
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.78 E-value=2.4 Score=35.79 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=37.1
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~ 70 (272)
++...|.||++.-.++ .+.||. +.+=+.|+..|.. ....|+.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4778999999887543 788887 5677899999998 7789999994
No 59
>PLN02400 cellulose synthase
Probab=66.23 E-value=6.7 Score=43.68 Aligned_cols=56 Identities=18% Similarity=0.439 Sum_probs=35.9
Q ss_pred CCCceeEeccCc-ccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 17 TTSHCRICHEEE-FESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 17 ~~~~CRIC~eee-ees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
+..+|+||-++- -..++.+..-|.=.| --|=+.|. ..=.+-|+..|++||++|+-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCY-EYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCY-EYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC--Cccccchh-heecccCCccCcccCCccccc
Confidence 456999998763 222344555565332 13777786 333445889999999999833
No 60
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=65.86 E-value=2 Score=34.19 Aligned_cols=19 Identities=63% Similarity=0.994 Sum_probs=0.0
Q ss_pred hhcccCCCCchhhhccCCC
Q 024114 251 EEEEEDDDDDDEEEQLDPR 269 (272)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ 269 (272)
++.++||+||||||+.=|+
T Consensus 37 dd~~DDD~dDdeeee~m~r 55 (81)
T PF14812_consen 37 DDYEDDDDDDDEEEEPMPR 55 (81)
T ss_dssp -------------------
T ss_pred cccccccccchhhcccccc
Confidence 3333444444455554444
No 61
>PLN02195 cellulose synthase A
Probab=65.42 E-value=6.2 Score=43.46 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=35.9
Q ss_pred CCCceeEeccCcc-cCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEF-ESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeee-es~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
....|+||-++-. +.++.+..-|+=.| --|=+.|. ..=.+-|+..|++||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~--~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS--YPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC--Cccccchh-hhhhhcCCccCCccCCccc
Confidence 4568999977532 22344555555332 23778887 4444558999999999997
No 62
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=61.85 E-value=5.9 Score=29.69 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=29.7
Q ss_pred ceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 20 ~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.|-|+++-= .++.+.||. +..=+.|+.+|+.. +..+|++|+++..
T Consensus 6 ~CpIt~~lM---~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 6 LCPITGELM---RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLS 50 (73)
T ss_dssp B-TTTSSB----SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-S
T ss_pred CCcCcCcHh---hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCC
Confidence 466665433 245777755 68999999999998 5678999987665
No 63
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=60.60 E-value=5.2 Score=27.69 Aligned_cols=22 Identities=27% Similarity=0.779 Sum_probs=16.1
Q ss_pred eecHHHHHHHHHhhCCcccccc
Q 024114 47 FAHRDCIQRWCYEKGNTTCEIC 68 (272)
Q Consensus 47 yVH~~CL~rWl~~kg~~~CEIC 68 (272)
-+|..|+++++..+.+.+|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 4999999999999887799887
No 64
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=60.09 E-value=3.5 Score=38.45 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=10.4
Q ss_pred CCCCchhhhccCCCCC
Q 024114 256 DDDDDDEEEQLDPRHS 271 (272)
Q Consensus 256 ~~~~~~~~~~~~~~~~ 271 (272)
||||+|-|+.|||||-
T Consensus 78 ~~~~~~~~~~~~~~~~ 93 (232)
T PRK12766 78 EEEDADVETELRPRGL 93 (232)
T ss_pred hhhhhhhhhhcccccc
Confidence 3333445788999984
No 65
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=59.56 E-value=4 Score=39.83 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=35.4
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
..-.||||++--. -+.++||. +-.-.-|+++.+.... .|++|...+.
T Consensus 24 s~lrC~IC~~~i~---ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRIS---IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheee---cceecccc-----cchhHHHHHHHhcCCC--CCccccccHH
Confidence 4568999987653 34788887 4466789999888765 8999997654
No 66
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.07 E-value=6.3 Score=38.61 Aligned_cols=50 Identities=22% Similarity=0.544 Sum_probs=34.5
Q ss_pred CCCceeEeccCcccCC-----CccccccccCCCcceecHHHHHHHHHhhC-----Cccccccccc
Q 024114 17 TTSHCRICHEEEFESC-----NSLEAPCACSGTVKFAHRDCIQRWCYEKG-----NTTCEICLQE 71 (272)
Q Consensus 17 ~~~~CRIC~eeeees~-----~~Li~PC~C~GSlkyVH~~CL~rWl~~kg-----~~~CEICk~~ 71 (272)
..+.|-||++.-.+.. .....+|+ +..=.+|+.+|...+. ...|++|+..
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVP 219 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCc
Confidence 5789999998765422 11224465 3455789999997665 6899999843
No 67
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=58.03 E-value=11 Score=37.05 Aligned_cols=34 Identities=21% Similarity=0.749 Sum_probs=25.6
Q ss_pred cccccCCCcceecHHHHHHHHHhh-----------CCccccccccccc
Q 024114 37 APCACSGTVKFAHRDCIQRWCYEK-----------GNTTCEICLQEYG 73 (272)
Q Consensus 37 ~PC~C~GSlkyVH~~CL~rWl~~k-----------g~~~CEICk~~Y~ 73 (272)
.+|.|+- --=..|+-||+..+ |+..|+-|++.|-
T Consensus 307 ~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 307 QQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4677752 23468999999876 4689999998874
No 68
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=56.53 E-value=14 Score=29.54 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCCCceeEeccCc-ccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 16 ETTSHCRICHEEE-FESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 16 e~~~~CRIC~eee-ees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
-+..+|.||-+.- ...++.+..-|.=-+ --|=+.|..-=++ -|+..|+.|+++|+..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~--fPvCr~CyEYErk-eg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA--FPVCRPCYEYERK-EGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHHH-TS-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC--CccchhHHHHHhh-cCcccccccCCCcccc
Confidence 4568999997752 222344555565332 2477888765443 3788999999999733
No 69
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=56.48 E-value=13 Score=35.73 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHH-HHHhhhhHHHH-HHHHHHHHHHhhh
Q 024114 194 YVVLTLELFLQVLL-LRACGIILPMY-VLMRTITAIHNSI 231 (272)
Q Consensus 194 ~~~~~~~~~~~~~~-lra~gillP~Y-i~~r~~~~~q~~r 231 (272)
||.|++.|...+.. +-..++.+=+| ++.|.+. +++||
T Consensus 219 Y~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~-v~~RR 257 (340)
T PF12794_consen 219 YYYTALQLLERLILSLYLLLGWLLVYQLILRWLL-VARRR 257 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55566665544432 33333344444 4555555 66665
No 70
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=54.71 E-value=6.5 Score=37.82 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=25.0
Q ss_pred cccccccccCCC-------C-CCchhHHHhhhhccccCCCccccCCCcchhhH
Q 024114 93 RDSLQIPRREHV-------P-RNPRLVAIAERLSAESHYPQCSSAAGRTAACC 137 (272)
Q Consensus 93 r~~~~i~r~~~~-------~-~~~~~~a~~e~~~~~~~y~e~~~~~~~~a~~C 137 (272)
|+-|...+|-.- + +|-+|-.-|.=+.|+++-.-|.+-|..|.--|
T Consensus 133 R~vw~hGGrif~CsfC~~flCEDDQFEHQAsCQvLe~E~~KC~SCNrlGq~sC 185 (314)
T PF06524_consen 133 RGVWDHGGRIFKCSFCDNFLCEDDQFEHQASCQVLESETFKCQSCNRLGQYSC 185 (314)
T ss_pred cccccCCCeEEEeecCCCeeeccchhhhhhhhhhhhcccccccccccccchhh
Confidence 566666554210 1 34455544444667766666777776666555
No 71
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=54.36 E-value=4.3 Score=47.44 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=4.1
Q ss_pred CCCccccCC
Q 024114 122 HYPQCSSAA 130 (272)
Q Consensus 122 ~y~e~~~~~ 130 (272)
.+.+|...+
T Consensus 63 ~~~~~~~~~ 71 (2849)
T PTZ00415 63 NKKECFDKN 71 (2849)
T ss_pred CcccccccC
Confidence 344555443
No 72
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=53.48 E-value=4.4 Score=40.25 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=34.6
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y 72 (272)
.-.|-||++=-. -+|++||. +-.-.-|+...++.+. .|+.|..++
T Consensus 23 lLRC~IC~eyf~---ip~itpCs-----HtfCSlCIR~~L~~~p--~CP~C~~~~ 67 (442)
T KOG0287|consen 23 LLRCGICFEYFN---IPMITPCS-----HTFCSLCIRKFLSYKP--QCPTCCVTV 67 (442)
T ss_pred HHHHhHHHHHhc---Cceecccc-----chHHHHHHHHHhccCC--CCCceeccc
Confidence 357999987643 46999976 3456788999988765 899999775
No 73
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=52.15 E-value=5.7 Score=30.45 Aligned_cols=33 Identities=24% Similarity=0.617 Sum_probs=23.9
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHH
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQR 55 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~r 55 (272)
....|.+|...-.. ..-.+-||. ..+|..|++|
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCC-----eEEecccccC
Confidence 45679999887654 234567875 6899999864
No 74
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=50.90 E-value=15 Score=40.93 Aligned_cols=56 Identities=21% Similarity=0.469 Sum_probs=37.4
Q ss_pred CCCCceeEeccCcc-cCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEF-ESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeee-es~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
-....|.||-++-. ..++.+..-|+=.| --|=+.|. ..=.+.|+..|+.||++|+-
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~--fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCG--FPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCC--Cccccchh-hhhhhcCCccCCccCCchhh
Confidence 36789999987632 22344555565332 23778887 44455588999999999983
No 75
>COG4420 Predicted membrane protein [Function unknown]
Probab=50.44 E-value=74 Score=29.15 Aligned_cols=29 Identities=41% Similarity=0.645 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhCC---CCCCcchhhh
Q 024114 142 LTFTVLLLVKHLFAVLTGN---TDDYPFALVT 170 (272)
Q Consensus 142 ii~m~lLLLrhal~ii~~g---~e~ysf~~~t 170 (272)
+.+.++|++|-.+.+.... -+.|||.++.
T Consensus 62 l~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~Ln 93 (191)
T COG4420 62 LTFTLLLLLWIVLNLFLVPGLAWDPYPFILLN 93 (191)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcCCCccHHHHH
Confidence 5677888888888885443 3889987766
No 76
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.59 E-value=7.5 Score=39.41 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=6.2
Q ss_pred HHHhhhhHHHHHHH
Q 024114 208 LRACGIILPMYVLM 221 (272)
Q Consensus 208 lra~gillP~Yi~~ 221 (272)
+++---+-|+..-.
T Consensus 234 ~k~td~~~~~l~~~ 247 (514)
T KOG3130|consen 234 HKVTDSHTPCLKDV 247 (514)
T ss_pred hhhhcccchHhhcC
Confidence 34444444554433
No 77
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=49.38 E-value=5.6 Score=39.92 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 024114 209 RACGIILPMYVLMRTITAIHNSIRREYH 236 (272)
Q Consensus 209 ra~gillP~Yi~~r~~~~~q~~r~rq~~ 236 (272)
=++++++=+-++++.+....+| |++++
T Consensus 360 gvavlivVv~viv~vc~~~rrr-R~~~~ 386 (439)
T PF02480_consen 360 GVAVLIVVVGVIVWVCLRCRRR-RRQRD 386 (439)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHhheeeeehhc-ccccc
Confidence 3444454455555555433333 35554
No 78
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=49.14 E-value=9.3 Score=33.31 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=5.1
Q ss_pred CCchhhhccCCC
Q 024114 258 DDDDEEEQLDPR 269 (272)
Q Consensus 258 ~~~~~~~~~~~~ 269 (272)
|+|++++..||-
T Consensus 74 d~~~~~~d~nP~ 85 (149)
T PF08595_consen 74 DADEDAADENPY 85 (149)
T ss_pred hhhhhhhccCch
Confidence 333333345553
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=48.79 E-value=15 Score=36.78 Aligned_cols=61 Identities=20% Similarity=0.495 Sum_probs=42.3
Q ss_pred EEeecCCCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh--CCccccccccccc
Q 024114 6 LFVEDFKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCEICLQEYG 73 (272)
Q Consensus 6 l~v~d~~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k--g~~~CEICk~~Y~ 73 (272)
+.+|...++.+++..|-.|.++-+-. +.-..||.|- | +-|---|-+-+ -+-.|+-|+..|.
T Consensus 2 m~~qei~~sedeed~cplcie~mdit-dknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 2 MNVQEIHNSEDEEDYCPLCIEPMDIT-DKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cchhhccccccccccCcccccccccc-cCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcc
Confidence 34667777777888899998875432 3457899994 3 34444465444 3679999999984
No 80
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=47.73 E-value=19 Score=35.72 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhh
Q 024114 217 MYVLMRTITAIHNSIRR 233 (272)
Q Consensus 217 ~Yi~~r~~~~~q~~r~r 233 (272)
..+++|.+.+..++|+|
T Consensus 318 ~~~vvR~vR~~~~hr~~ 334 (374)
T PF01528_consen 318 IMMVVRLVRAFLYHRRR 334 (374)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 45678888888777654
No 81
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=47.37 E-value=8.9 Score=38.85 Aligned_cols=49 Identities=24% Similarity=0.481 Sum_probs=36.9
Q ss_pred CCCceeEeccCcccC-CCccccccccCCCcceecHHHHHHHHHhhCCcccccccc
Q 024114 17 TTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (272)
Q Consensus 17 ~~~~CRIC~eeeees-~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~ 70 (272)
.+-.|-.|-+.-... ++---.||+ +-.|..|++..+...+..+||-|++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 345688886643222 223358998 6899999999999999999999994
No 82
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=46.66 E-value=17 Score=42.68 Aligned_cols=57 Identities=23% Similarity=0.508 Sum_probs=41.5
Q ss_pred CCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh--------CCccccccccccc
Q 024114 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--------GNTTCEICLQEYG 73 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k--------g~~~CEICk~~Y~ 73 (272)
.++++....|-||+.+.-. -.||---|--+-.|..|..+-+..+ +-..|+||+.+.+
T Consensus 3480 ~tkQD~DDmCmICFTE~L~-----AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3480 ATKQDADDMCMICFTEALS-----AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hhhcccCceEEEEehhhhC-----CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3456678999999987532 3666554445789999997766554 4689999998775
No 83
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=45.73 E-value=23 Score=29.24 Aligned_cols=22 Identities=18% Similarity=0.242 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh
Q 024114 212 GIILPMYVLMRTITAIHNSIRR 233 (272)
Q Consensus 212 gillP~Yi~~r~~~~~q~~r~r 233 (272)
+|++.+.|++-.+..+-+||||
T Consensus 7 iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444433344433
No 84
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=45.72 E-value=19 Score=39.44 Aligned_cols=55 Identities=20% Similarity=0.507 Sum_probs=39.1
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh-----CCccccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-----GNTTCEICLQEYG 73 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k-----g~~~CEICk~~Y~ 73 (272)
++...+|-||.+.-....+.| +|+.=-+..|..|+++|-..+ ..|.|+-|+..++
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 345689999998754433334 233323669999999999764 3699999996664
No 85
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=45.68 E-value=7.2 Score=36.53 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=28.5
Q ss_pred CCCccccccccCCC-cceecHHHHHHHHHhhCCccccccccc
Q 024114 31 SCNSLEAPCACSGT-VKFAHRDCIQRWCYEKGNTTCEICLQE 71 (272)
Q Consensus 31 s~~~Li~PC~C~GS-lkyVH~~CL~rWl~~kg~~~CEICk~~ 71 (272)
+.+.|+. |.|.+= +.|+|..|+--=..-+|+|.|+-|+..
T Consensus 228 syg~Mi~-CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 228 SYGKMIG-CDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccc-cCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 3455654 666544 489999997655555789999999854
No 86
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=45.65 E-value=9.1 Score=42.52 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=5.6
Q ss_pred cCCCccccCC
Q 024114 121 SHYPQCSSAA 130 (272)
Q Consensus 121 ~~y~e~~~~~ 130 (272)
+.-++|++.+
T Consensus 1300 P~Ldqc~VtF 1309 (1516)
T KOG1832|consen 1300 PSLDQCAVTF 1309 (1516)
T ss_pred ccccceEEEe
Confidence 3455666655
No 87
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=45.59 E-value=8.5 Score=40.80 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 024114 199 LELFLQV 205 (272)
Q Consensus 199 ~~~~~~~ 205 (272)
.+++|.+
T Consensus 591 veiLLsl 597 (784)
T PF04931_consen 591 VEILLSL 597 (784)
T ss_pred HHHHHHH
Confidence 3444444
No 88
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=43.84 E-value=11 Score=35.23 Aligned_cols=7 Identities=43% Similarity=0.924 Sum_probs=2.7
Q ss_pred CCchhhh
Q 024114 258 DDDDEEE 264 (272)
Q Consensus 258 ~~~~~~~ 264 (272)
|||||++
T Consensus 143 ddeDd~~ 149 (244)
T PF04889_consen 143 DDEDDTA 149 (244)
T ss_pred ccchHHH
Confidence 3334433
No 89
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=43.65 E-value=44 Score=30.43 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhhh
Q 024114 219 VLMRTITAIHNSI 231 (272)
Q Consensus 219 i~~r~~~~~q~~r 231 (272)
.++.++..+.+.|
T Consensus 61 ~~~~~~~~~~~~~ 73 (248)
T PF11368_consen 61 LFLLTFYFIYKSR 73 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 90
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=42.90 E-value=35 Score=30.46 Aligned_cols=41 Identities=20% Similarity=0.519 Sum_probs=26.4
Q ss_pred CCceeEeccCcccC-------CCccccccccCCCcceecHHHHHHHHHhh
Q 024114 18 TSHCRICHEEEFES-------CNSLEAPCACSGTVKFAHRDCIQRWCYEK 60 (272)
Q Consensus 18 ~~~CRIC~eeeees-------~~~Li~PC~C~GSlkyVH~~CL~rWl~~k 60 (272)
...|-||++-.-.. .++=-.|=-|.. .|-|..||.+..+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 46899998865321 111123333664 589999999998764
No 91
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=41.75 E-value=18 Score=38.98 Aligned_cols=57 Identities=28% Similarity=0.502 Sum_probs=38.2
Q ss_pred CCCceeEeccCcccCC--CccccccccCCCcceecHHHHHHH---HHhh-----CCccccccccccc
Q 024114 17 TTSHCRICHEEEFESC--NSLEAPCACSGTVKFAHRDCIQRW---CYEK-----GNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~--~~Li~PC~C~GSlkyVH~~CL~rW---l~~k-----g~~~CEICk~~Y~ 73 (272)
.-+.|.||.|+..+.. .---.-|+=.|=-+-+|-.|-|+- |.+. +...|-.|++-|.
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 5589999988754421 112345655555578999998875 3443 3478999998874
No 92
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=39.94 E-value=13 Score=24.99 Aligned_cols=17 Identities=24% Similarity=0.598 Sum_probs=13.0
Q ss_pred ccccccccccccCccCC
Q 024114 63 TTCEICLQEYGPGYTAP 79 (272)
Q Consensus 63 ~~CEICk~~Y~~~yt~p 79 (272)
++|+.|+..|...|..|
T Consensus 2 r~C~~Cg~~Yh~~~~pP 18 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP 18 (36)
T ss_dssp EEETTTTEEEETTTB--
T ss_pred cCcCCCCCccccccCCC
Confidence 47999999999877655
No 93
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=38.94 E-value=51 Score=32.98 Aligned_cols=22 Identities=5% Similarity=0.141 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 024114 204 QVLLLRACGIILPMYVLMRTIT 225 (272)
Q Consensus 204 ~~~~lra~gillP~Yi~~r~~~ 225 (272)
+.+.+|.+.+.++..+.+.-+.
T Consensus 195 sg~~~r~i~~~i~~~i~~~~~~ 216 (465)
T PF03606_consen 195 SGFWFRQIPFVIFTLIAIAYVH 216 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3557898888887666554443
No 94
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=38.61 E-value=20 Score=25.61 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=16.1
Q ss_pred hhCCccccccccccc-cCccCCCCC
Q 024114 59 EKGNTTCEICLQEYG-PGYTAPSKK 82 (272)
Q Consensus 59 ~kg~~~CEICk~~Y~-~~yt~p~~~ 82 (272)
.+.+.+||+|+..-+ ..|..||..
T Consensus 4 ~Rs~~kCELC~a~~~L~vy~Vpp~~ 28 (47)
T smart00782 4 ARCESKCELCGSDSPLVVYAVPPSS 28 (47)
T ss_pred HHcCCcccCcCCCCCceEEecCCCC
Confidence 445568999997765 455666544
No 95
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=38.00 E-value=21 Score=32.19 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhh
Q 024114 213 IILPMYVLMRTITAIHNSIRREY 235 (272)
Q Consensus 213 illP~Yi~~r~~~~~q~~r~rq~ 235 (272)
+.+|-..++-.+..+|+||+|++
T Consensus 161 ~yiPAlLLL~lv~~lQrRR~~~~ 183 (183)
T PF11874_consen 161 VYIPALLLLGLVAWLQRRRRRKQ 183 (183)
T ss_pred EeHHHHHHHHHHHHHhhhhccCC
Confidence 45688888889999999997653
No 96
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=37.78 E-value=14 Score=34.73 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=39.7
Q ss_pred cccccccCCCcceecHHHHHHHHHhhC----Cccccc--cccccccCccCCCCC
Q 024114 35 LEAPCACSGTVKFAHRDCIQRWCYEKG----NTTCEI--CLQEYGPGYTAPSKK 82 (272)
Q Consensus 35 Li~PC~C~GSlkyVH~~CL~rWl~~kg----~~~CEI--Ck~~Y~~~yt~p~~~ 82 (272)
+-.||-|.=++..-..-|..++++.++ ..+|-| |++-|.+.|-.|.+.
T Consensus 181 ~w~PC~C~l~lci~WYPCgLKYCkgkd~k~ssYrCGIKTC~Kc~~f~yYV~qKq 234 (240)
T PF14941_consen 181 SWKPCICRLELCIEWYPCGLKYCKGKDQKPSSYRCGIKTCQKCYQFDYYVPQKQ 234 (240)
T ss_pred CCCceeeeecceeeeEccchhhccCCCCCCCccccccccccccccceeecChhh
Confidence 669999999999999999999998875 467766 888888888776553
No 97
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=36.75 E-value=18 Score=34.94 Aligned_cols=6 Identities=33% Similarity=1.304 Sum_probs=3.0
Q ss_pred cccccC
Q 024114 37 APCACS 42 (272)
Q Consensus 37 ~PC~C~ 42 (272)
++|.|+
T Consensus 117 HaC~Cp 122 (314)
T PF06524_consen 117 HACTCP 122 (314)
T ss_pred ccccCc
Confidence 455554
No 98
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=36.43 E-value=17 Score=38.03 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=18.3
Q ss_pred CCCCCchhhhcccCCCCchhhhccCC
Q 024114 243 ETSNSDEEEEEEEDDDDDDEEEQLDP 268 (272)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (272)
++.+.+.+.|++|||||.|++..+|-
T Consensus 179 ~s~~~dgda~sdEdedd~D~Dve~D~ 204 (653)
T KOG2548|consen 179 NSLDADGDAESDEDEDDEDEDVEFDS 204 (653)
T ss_pred Cccccccccccccccccccccccccc
Confidence 34555666677788888888877774
No 99
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=36.23 E-value=1.2e+02 Score=25.12 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 024114 140 LALTFTVLLL 149 (272)
Q Consensus 140 vAii~m~lLL 149 (272)
-.++|.++++
T Consensus 39 Y~i~fg~ll~ 48 (136)
T PF08507_consen 39 YCILFGLLLI 48 (136)
T ss_pred HHHHHHHHHH
Confidence 3344544444
No 100
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=35.89 E-value=18 Score=38.43 Aligned_cols=7 Identities=14% Similarity=0.230 Sum_probs=3.1
Q ss_pred HhhhhHH
Q 024114 210 ACGIILP 216 (272)
Q Consensus 210 a~gillP 216 (272)
+++.+.|
T Consensus 612 vf~~~~~ 618 (784)
T PF04931_consen 612 VFEAFCP 618 (784)
T ss_pred HHHHHHh
Confidence 3444444
No 101
>PRK15091 ABC transporter outer membrane lipoprotein; Provisional
Probab=33.73 E-value=25 Score=33.06 Aligned_cols=15 Identities=13% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 024114 216 PMYVLMRTITAIHNSI 231 (272)
Q Consensus 216 P~Yi~~r~~~~~q~~r 231 (272)
=-|+.+|.++ +|+|+
T Consensus 208 DpY~~~RdaY-lQ~R~ 222 (251)
T PRK15091 208 DPYIMVREAY-FQRHD 222 (251)
T ss_pred CchHHHHHHH-HHHHH
Confidence 4689999999 88887
No 102
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=32.86 E-value=16 Score=33.85 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=20.5
Q ss_pred eccCcccCCCc-cccccccCCCcceecHHH
Q 024114 24 CHEEEFESCNS-LEAPCACSGTVKFAHRDC 52 (272)
Q Consensus 24 C~eeeees~~~-Li~PC~C~GSlkyVH~~C 52 (272)
|..++-+.++- ...|+.|.|.+-|||+++
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~r 122 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRKR 122 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEccc
Confidence 55555443222 378999999999999943
No 103
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=31.34 E-value=24 Score=38.06 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=4.5
Q ss_pred CceeEeccC
Q 024114 19 SHCRICHEE 27 (272)
Q Consensus 19 ~~CRIC~ee 27 (272)
..|.|=+.+
T Consensus 685 D~Cei~l~g 693 (952)
T KOG1834|consen 685 DYCEIHLQG 693 (952)
T ss_pred CceEEEeec
Confidence 455555444
No 104
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=30.79 E-value=77 Score=30.23 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=23.3
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hCCCCC
Q 024114 126 CSSAAGRTAACCRSLALTFTVLLLVKHLFAVL-TGNTDD 163 (272)
Q Consensus 126 ~~~~~~~~a~~CRsvAii~m~lLLLrhal~ii-~~g~e~ 163 (272)
|---+.-|..+.|.-+|+|.+|-+|=-++.+. +.|+-+
T Consensus 183 CrKvSSVG~~faRkR~i~f~llgllfliiaigltvGT~~ 221 (256)
T PF09788_consen 183 CRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWT 221 (256)
T ss_pred CceeccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44444556678888888888776655555553 345433
No 105
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=30.76 E-value=18 Score=36.39 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=5.4
Q ss_pred chhhhcccCCCCchhhh--ccCCCCCC
Q 024114 248 DEEEEEEEDDDDDDEEE--QLDPRHSV 272 (272)
Q Consensus 248 ~~~~~~~~~~~~~~~~~--~~~~~~~~ 272 (272)
+.+++|+.|.|||||++ +|+..|++
T Consensus 223 ~~~~~e~~dsd~~ee~~~iel~~~hPL 249 (404)
T PF12753_consen 223 ENEIEEGLDSDDEEEEEEIELSENHPL 249 (404)
T ss_dssp -----------------T--TTTTTTH
T ss_pred cccccccccccccccccceeeCCCCCc
Confidence 44445555555555554 78888863
No 106
>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=29.70 E-value=1.3e+02 Score=26.55 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCC
Q 024114 141 ALTFTVLLLVKHLFAVLTGNTDDY 164 (272)
Q Consensus 141 Aii~m~lLLLrhal~ii~~g~e~y 164 (272)
.+|++-||++|-+...+.+|.-|+
T Consensus 97 ~~ILigLLiiRi~~K~~is~sid~ 120 (163)
T COG4846 97 PVILIGLLIIRIVMKYIISGSIDV 120 (163)
T ss_pred hhHHHHHHHHHHHHHHHHcCCccH
Confidence 378999999999999999987654
No 107
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.56 E-value=48 Score=30.20 Aligned_cols=48 Identities=21% Similarity=0.483 Sum_probs=32.5
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y 72 (272)
...-|-||++...+. .+.-+-|. +..=.+|++.-++. ..+|++|++..
T Consensus 130 ~~~~CPiCl~~~sek-~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkI 177 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK-VPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKI 177 (187)
T ss_pred cccCCCceecchhhc-cccccccc-----hhHHHHHHHHHHHh--CCCCCCccccc
Confidence 447899999987542 12224443 45667888887765 46999999744
No 108
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=28.74 E-value=12 Score=35.15 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=12.1
Q ss_pred CCCCchhhhcccCCCC
Q 024114 244 TSNSDEEEEEEEDDDD 259 (272)
Q Consensus 244 ~~~~~~~~~~~~~~~~ 259 (272)
|.|++||||||+|---
T Consensus 158 sAMqEeeeEEe~DAa~ 173 (238)
T PF02084_consen 158 SAMQEEEEEEEQDAAN 173 (238)
T ss_pred HHHhhhHHHHHHHHhh
Confidence 6788888888877543
No 109
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=51 Score=34.17 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=33.6
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh---CCcccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK---GNTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k---g~~~CEICk~~Y~~ 74 (272)
...|-||+++..-+ ..+-|. +..=-.||.+.++.. +-..|++|...+.+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67899999886432 333354 455667887766543 56899999877654
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=38 Score=33.33 Aligned_cols=27 Identities=19% Similarity=0.615 Sum_probs=21.8
Q ss_pred eecHHHHHHHHHhh-----------CCccccccccccc
Q 024114 47 FAHRDCIQRWCYEK-----------GNTTCEICLQEYG 73 (272)
Q Consensus 47 yVH~~CL~rWl~~k-----------g~~~CEICk~~Y~ 73 (272)
.--++||.+|+..+ |+.+|+.|++.|-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 45689999999654 5789999998884
No 111
>PRK15049 L-asparagine permease; Provisional
Probab=27.90 E-value=3.8e+02 Score=26.76 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=19.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCchhhh
Q 024114 208 LRACGIILPMYVLMRTITAIHNSIRREYHHVTYDDETSNSDEEEE 252 (272)
Q Consensus 208 lra~gillP~Yi~~r~~~~~q~~r~rq~~~~~~~~~~~~~~~~~~ 252 (272)
.|.++++.+.+.++-++.-.-+|+ | .+...+++++.++|++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 487 (499)
T PRK15049 447 GTYTIAALPIIGILLVIGWFGVRK-R---VAEIHSTAPVVEEDEE 487 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-c---cccccCCCCccccccc
Confidence 355666665555444443222222 2 2335566666655544
No 112
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=27.55 E-value=23 Score=38.52 Aligned_cols=24 Identities=54% Similarity=0.927 Sum_probs=0.0
Q ss_pred CCCCchhhhcccC-CCCchhhhccC
Q 024114 244 TSNSDEEEEEEED-DDDDDEEEQLD 267 (272)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~ 267 (272)
.+..+++++|+|| |+|+||+|+-|
T Consensus 886 ~~~~~~d~dE~e~~~~dEd~d~~ed 910 (911)
T PF05086_consen 886 QSNGDEDTDEDEDQDEDEDEDEDED 910 (911)
T ss_pred HhcCCcccccccccccccccccccc
No 113
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.50 E-value=27 Score=37.82 Aligned_cols=16 Identities=6% Similarity=0.374 Sum_probs=10.7
Q ss_pred CCcceecHHHHHHHHH
Q 024114 43 GTVKFAHRDCIQRWCY 58 (272)
Q Consensus 43 GSlkyVH~~CL~rWl~ 58 (272)
+.+.|+...||.--.+
T Consensus 86 ~~~~yiKs~~l~~lgd 101 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGD 101 (885)
T ss_pred HHHHHHHHHHHhhccC
Confidence 5667888888765443
No 114
>PF10628 CotE: Outer spore coat protein E (CotE); InterPro: IPR018901 CotE is a morphogenic protein that is required for the assembly of the outer coat of the endospore [] and spore resistance to lysozyme []. CotE also regulates the expression of cotA, cotB, cotC and other genes encoding spore outer coat proteins []. The timing of cotE expression has been shown in Bacillus subtilis to affect spore coat morphology but not lysozyme resistance [].
Probab=27.36 E-value=27 Score=31.70 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=11.5
Q ss_pred ccCCCCchhhhccCCC
Q 024114 254 EEDDDDDDEEEQLDPR 269 (272)
Q Consensus 254 ~~~~~~~~~~~~~~~~ 269 (272)
.|.+.+|+|-|+|||.
T Consensus 159 ~d~~~~d~e~e~l~p~ 174 (182)
T PF10628_consen 159 WDFEIEDEEFEDLDPD 174 (182)
T ss_pred cccccccchhhhcChh
Confidence 3445567888999995
No 115
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.01 E-value=2.1e+02 Score=27.42 Aligned_cols=19 Identities=11% Similarity=-0.160 Sum_probs=9.2
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 024114 206 LLLRACGIILPMYVLMRTI 224 (272)
Q Consensus 206 ~~lra~gillP~Yi~~r~~ 224 (272)
+++|.+..++=+.-.+|.+
T Consensus 57 ~~~~~~~~~~~~p~~~~~~ 75 (398)
T PRK10747 57 AIEWLLRRIFRTGARTRGW 75 (398)
T ss_pred HHHHHHHHHHhcchhhhHH
Confidence 3445555444444444554
No 116
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.92 E-value=36 Score=30.94 Aligned_cols=39 Identities=33% Similarity=0.651 Sum_probs=23.5
Q ss_pred CceeEeccCcccCCCccccccccCCCcceec-HHHHHHHHHhhCCccccccccc
Q 024114 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAH-RDCIQRWCYEKGNTTCEICLQE 71 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~PC~C~GSlkyVH-~~CL~rWl~~kg~~~CEICk~~ 71 (272)
..||.|.+.+. ..+..||. +++| .. +..+ ..+||+|+..
T Consensus 159 ~~Cr~C~~~~~---~VlllPCr-----Hl~lC~~-----C~~~-~~~CPiC~~~ 198 (207)
T KOG1100|consen 159 RSCRKCGEREA---TVLLLPCR-----HLCLCGI-----CDES-LRICPICRSP 198 (207)
T ss_pred ccceecCcCCc---eEEeeccc-----ceEeccc-----cccc-CccCCCCcCh
Confidence 44999977653 36889987 2211 01 1222 5679999854
No 117
>PHA03375 hypothetical protein; Provisional
Probab=26.87 E-value=23 Score=38.21 Aligned_cols=29 Identities=24% Similarity=0.669 Sum_probs=20.9
Q ss_pred eccCcccCCCc-cccccccCCCcceecHHH
Q 024114 24 CHEEEFESCNS-LEAPCACSGTVKFAHRDC 52 (272)
Q Consensus 24 C~eeeees~~~-Li~PC~C~GSlkyVH~~C 52 (272)
|+.++.+.++- ...+|.|.|.+-|||+++
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~r 128 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRSR 128 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEecc
Confidence 66665443322 369999999999999943
No 118
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
Probab=26.81 E-value=43 Score=32.31 Aligned_cols=18 Identities=44% Similarity=0.527 Sum_probs=9.1
Q ss_pred cccCCCCCchhhhcccCC
Q 024114 240 YDDETSNSDEEEEEEEDD 257 (272)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~ 257 (272)
.|.+.+--|-|||||||+
T Consensus 231 ~d~dgfqadtee~eeed~ 248 (292)
T PF15539_consen 231 GDMDGFQADTEEDEEEDG 248 (292)
T ss_pred ccCcccccCcccccccCC
Confidence 455555445555554443
No 119
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=26.77 E-value=1.8e+02 Score=31.96 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Q 024114 202 FLQVLLLRACGIILPMYVLMRTITAIHNSIRR 233 (272)
Q Consensus 202 ~~~~~~lra~gillP~Yi~~r~~~~~q~~r~r 233 (272)
.+|++++=.|.+-+|.....|=..+..++++|
T Consensus 632 ~vQ~~ll~~Al~cVPwmLl~KPl~l~~~~~~r 663 (829)
T KOG2189|consen 632 QVQLILLVLALVCVPWMLLGKPLYLRRRHKNR 663 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHhhhc
Confidence 56788888999999999999998876666655
No 120
>PF05009 EBV-NA3: Epstein-Barr virus nuclear antigen 3 (EBNA-3); InterPro: IPR007706 This family contains EBNA-3A, -3B, and -3C which are latent infection nuclear proteins important for Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)-induced B-cell immortalisation and the immune response to EBVG infection. ; GO: 0016032 viral reproduction, 0042025 host cell nucleus; PDB: 3SJV_H 3DXA_M.
Probab=26.60 E-value=22 Score=33.79 Aligned_cols=29 Identities=34% Similarity=0.591 Sum_probs=0.0
Q ss_pred ccCCCCCchhhhcccCCCCch-hhhccCCC
Q 024114 241 DDETSNSDEEEEEEEDDDDDD-EEEQLDPR 269 (272)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 269 (272)
++.+...++|||+-|.|.||| |--+..|+
T Consensus 212 ~~a~~Et~sE~eD~e~e~dde~elP~ivp~ 241 (255)
T PF05009_consen 212 DDAIVETSSESEDSESESDDEAELPYIVPR 241 (255)
T ss_dssp ------------------------------
T ss_pred CCCcccccccchhhccccCcccCCceecCC
Confidence 455556666666666666666 55566665
No 121
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=26.55 E-value=62 Score=32.63 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=39.7
Q ss_pred EEEeecCCCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 5 VLFVEDFKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 5 ~l~v~d~~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
+|.-.+..+..++...|-||-+...-+ -..||.= -.-..|--|-..--.+..|.+|++....+
T Consensus 48 nlttsSaddtDEen~~C~ICA~~~TYs---~~~PC~H-----~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 48 NLTTSSADDTDEENMNCQICAGSTTYS---ARYPCGH-----QICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccccccccccceeEEecCCceEE---EeccCCc-----hHHHHHHHHHHHHHhccCCCccccccceE
Confidence 444445556667789999998775432 4789871 12223444444444566899999888633
No 122
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.53 E-value=22 Score=36.23 Aligned_cols=44 Identities=30% Similarity=0.803 Sum_probs=33.3
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+....|+||..+- . .-+.||. |..|+++|...+. .|+.|+....
T Consensus 477 ~~~~~~~~~~~~~-~---~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-S---ARITPCS--------HALCLRKWLYVQE--VCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-H---hcccccc--------chhHHHhhhhhcc--ccCCCchhhh
Confidence 4558899998765 1 1356766 9999999998765 7999986554
No 123
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=25.53 E-value=28 Score=19.29 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=6.5
Q ss_pred cccccccccc
Q 024114 64 TCEICLQEYG 73 (272)
Q Consensus 64 ~CEICk~~Y~ 73 (272)
.|++|+..|+
T Consensus 2 ~C~~C~~~~~ 11 (24)
T PF13894_consen 2 QCPICGKSFR 11 (24)
T ss_dssp E-SSTS-EES
T ss_pred CCcCCCCcCC
Confidence 6999998875
No 124
>PF05097 DUF688: Protein of unknown function (DUF688); InterPro: IPR007789 This entry consists of uncharacterised proteins.
Probab=25.22 E-value=33 Score=34.88 Aligned_cols=12 Identities=75% Similarity=1.207 Sum_probs=4.7
Q ss_pred hhcccCCCCchh
Q 024114 251 EEEEEDDDDDDE 262 (272)
Q Consensus 251 ~~~~~~~~~~~~ 262 (272)
++|+||++|||+
T Consensus 227 ~ee~ed~~ddd~ 238 (446)
T PF05097_consen 227 DEESEDEDDDDE 238 (446)
T ss_pred cccccccccccc
Confidence 333344333333
No 125
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.19 E-value=1.3e+02 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 024114 192 GFYVVLTLELFLQVLLLRACGIILPMYVLMRTI 224 (272)
Q Consensus 192 ~~~~~~~~~~~~~~~~lra~gillP~Yi~~r~~ 224 (272)
-|+||+++..|+-.+.. +.|+|-+.|-.+.|
T Consensus 8 vfdyal~K~~~FA~L~i--~~FiILLIi~~~IW 38 (121)
T PF10669_consen 8 VFDYALTKIMFFAFLFI--VVFIILLIITKSIW 38 (121)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 48899999887765433 33333334444444
No 126
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.04 E-value=4.1e+02 Score=30.25 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhh
Q 024114 194 YVVLTLELFLQVLLLRACGI--ILPMYVLMRTITAIHNSI 231 (272)
Q Consensus 194 ~~~~~~~~~~~~~~lra~gi--llP~Yi~~r~~~~~q~~r 231 (272)
||.|++-|...+...=++++ ++=-+++.|.+. |++||
T Consensus 692 Y~yTa~~L~~~l~~S~~l~~~~~l~y~~~~R~l~-i~~RR 730 (1109)
T PRK10929 692 YLATAQALLARLETSVAIWFLLLVVYHIIRRWML-IQRRR 730 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55566666555543333222 333347777777 66655
No 127
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=24.97 E-value=3.1e+02 Score=20.79 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 024114 196 VLTLELFLQVLLLRACGII 214 (272)
Q Consensus 196 ~~~~~~~~~~~~lra~gil 214 (272)
.+|..+|+.+++.=+.|.+
T Consensus 42 ~lS~~l~~lil~~~~~G~i 60 (63)
T PF11137_consen 42 GLSALLFLLILIALYTGWI 60 (63)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 4566666666665555554
No 128
>PHA03283 envelope glycoprotein E; Provisional
Probab=24.90 E-value=65 Score=33.65 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 024114 203 LQVLLLRACGIILPMYVLMRTITAIHNSIRREYHH 237 (272)
Q Consensus 203 ~~~~~lra~gillP~Yi~~r~~~~~q~~r~rq~~~ 237 (272)
+.+.++=++| ++=+-+.+|++..--+++||-|+.
T Consensus 402 ~~~~~~~~~~-~~~~~l~vw~c~~~r~~~~~~y~i 435 (542)
T PHA03283 402 FLLAIICTCA-ALLVALVVWGCILYRRSNRKPYEV 435 (542)
T ss_pred hHHHHHHHHH-HHHHHHhhhheeeehhhcCCcccc
Confidence 3344455555 344455556655434455577754
No 129
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=24.79 E-value=1.1e+02 Score=33.38 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 024114 143 TFTVLLLVKHLFAVLTGNT 161 (272)
Q Consensus 143 i~m~lLLLrhal~ii~~g~ 161 (272)
+|.-.||+.-+...+++++
T Consensus 318 ~W~p~llllc~~~k~l~~a 336 (763)
T TIGR00993 318 VWKPHLLLLCYSSKILSEA 336 (763)
T ss_pred hhHHHHHHHHHHhhhhccc
Confidence 3444455555556666665
No 130
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.06 E-value=3.8e+02 Score=31.32 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=6.1
Q ss_pred HHHHHhCCCCC
Q 024114 153 LFAVLTGNTDD 163 (272)
Q Consensus 153 al~ii~~g~e~ 163 (272)
+++++.-...|
T Consensus 38 ~lALiSYsPsD 48 (1355)
T PRK10263 38 MAALLSFNPSD 48 (1355)
T ss_pred HHHHHhCCccC
Confidence 45566555544
No 131
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=23.20 E-value=32 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.902 Sum_probs=9.0
Q ss_pred ccccccccccc
Q 024114 64 TCEICLQEYGP 74 (272)
Q Consensus 64 ~CEICk~~Y~~ 74 (272)
.|+.|+..|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 69999988863
No 132
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=22.93 E-value=53 Score=23.28 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=14.9
Q ss_pred CccccccccCCCcceecHHHH--HHHHHh---hCCccccccccc
Q 024114 33 NSLEAPCACSGTVKFAHRDCI--QRWCYE---KGNTTCEICLQE 71 (272)
Q Consensus 33 ~~Li~PC~C~GSlkyVH~~CL--~rWl~~---kg~~~CEICk~~ 71 (272)
..+..|++= ..-.|..|+ ..|+.. ++.+.|++|+++
T Consensus 10 ~~i~~P~Rg---~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 10 QRIRIPVRG---KNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-SSEEEE---TT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred CEEEeCccC---CcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 346677652 346788885 456643 467999999863
No 133
>PHA02608 67 prohead core protein; Provisional
Probab=22.71 E-value=68 Score=25.64 Aligned_cols=12 Identities=25% Similarity=0.130 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhh
Q 024114 221 MRTITAIHNSIR 232 (272)
Q Consensus 221 ~r~~~~~q~~r~ 232 (272)
.|..++|+.+|.
T Consensus 26 ~rt~~li~e~k~ 37 (80)
T PHA02608 26 ARTEALIEEEKV 37 (80)
T ss_pred HHHHHHHHHHHH
Confidence 466666777663
No 134
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.41 E-value=45 Score=30.73 Aligned_cols=24 Identities=46% Similarity=0.685 Sum_probs=11.0
Q ss_pred cCCCCCchhhhcccC---CCCchhhhc
Q 024114 242 DETSNSDEEEEEEED---DDDDDEEEQ 265 (272)
Q Consensus 242 ~~~~~~~~~~~~~~~---~~~~~~~~~ 265 (272)
+-.+.+|+|++++++ +||.||++|
T Consensus 196 d~d~d~D~eD~~gD~e~~~edsde~~q 222 (227)
T KOG3241|consen 196 DSDPDSDEEDNVGDDEHDLEDSDENEQ 222 (227)
T ss_pred ccCCccccccccCcccccccccccccc
Confidence 333444555444432 344455555
No 135
>PRK11246 hypothetical protein; Provisional
Probab=22.25 E-value=1.3e+02 Score=27.95 Aligned_cols=15 Identities=53% Similarity=0.649 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhhH
Q 024114 201 LFLQVLLLRACGIIL 215 (272)
Q Consensus 201 ~~~~~~~lra~gill 215 (272)
+.+.+++-=++||||
T Consensus 165 ~r~Mll~al~iG~lL 179 (218)
T PRK11246 165 LRLMLLLALAIGIVL 179 (218)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555566655
No 136
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.22 E-value=48 Score=23.61 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=13.3
Q ss_pred ccccccccccccCccCC
Q 024114 63 TTCEICLQEYGPGYTAP 79 (272)
Q Consensus 63 ~~CEICk~~Y~~~yt~p 79 (272)
..|.+|+..|.+....|
T Consensus 2 y~C~~CgyvYd~~~Gd~ 18 (47)
T PF00301_consen 2 YQCPVCGYVYDPEKGDP 18 (47)
T ss_dssp EEETTTSBEEETTTBBG
T ss_pred cCCCCCCEEEcCCcCCc
Confidence 47999999998766554
No 137
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=21.93 E-value=42 Score=26.76 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=12.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q 024114 205 VLLLRACGIILPMYVLMRTITAIH 228 (272)
Q Consensus 205 ~~~lra~gillP~Yi~~r~~~~~q 228 (272)
++.+=+.++++-+-|++|++..+.
T Consensus 6 i~~iialiv~~iiaIvvW~iv~ie 29 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIVYIE 29 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666678888886544
No 138
>KOG2399 consensus K+-dependent Na+:Ca2+ antiporter [Inorganic ion transport and metabolism]
Probab=21.66 E-value=2.5e+02 Score=29.83 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHH---HHHHhhhhh
Q 024114 211 CGIILPMYVLMRTI---TAIHNSIRR 233 (272)
Q Consensus 211 ~gillP~Yi~~r~~---~~~q~~r~r 233 (272)
..-+.+.|+.+-.. ..+++.||+
T Consensus 238 fl~~y~~Yv~~vi~~~~~~i~~~~r~ 263 (605)
T KOG2399|consen 238 FLGIYVVYVVTVIVLLSARIRKDRRK 263 (605)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455677776664 445555543
No 139
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=21.01 E-value=33 Score=38.35 Aligned_cols=52 Identities=27% Similarity=0.526 Sum_probs=35.6
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~ 70 (272)
+....|-||.+.+.+.. ..+.-|. |=-.+||+.|.-.=...-|.+.|--|.+
T Consensus 217 ~~D~~C~iC~~~~~~n~-n~ivfCD--~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~ 268 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNS-NVIVFCD--GCNLAVHQECYGIPFIPEGQWLCRRCLQ 268 (1051)
T ss_pred CCCccceeecccccCCC-ceEEEcC--CCcchhhhhccCCCCCCCCcEeehhhcc
Confidence 46789999999887643 3445543 3337999999884444456777777763
No 140
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=20.58 E-value=1.8e+02 Score=21.15 Aligned_cols=11 Identities=18% Similarity=0.187 Sum_probs=4.8
Q ss_pred HHhhhhhhhcc
Q 024114 227 IHNSIRREYHH 237 (272)
Q Consensus 227 ~q~~r~rq~~~ 237 (272)
..=.+.-.|++
T Consensus 21 ~~~~K~ygYkh 31 (50)
T PF12606_consen 21 CTTLKAYGYKH 31 (50)
T ss_pred HHHhhcccccc
Confidence 33344345544
No 141
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=1.1e+02 Score=29.31 Aligned_cols=46 Identities=24% Similarity=0.562 Sum_probs=33.9
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHH-HHHhhCCccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQR-WCYEKGNTTCEICLQE 71 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~r-Wl~~kg~~~CEICk~~ 71 (272)
....|-||++..+ .+.-+||. +..--.||.. |...+- ..|++|++.
T Consensus 214 ~d~kC~lC~e~~~---~ps~t~Cg-----HlFC~~Cl~~~~t~~k~-~~CplCRak 260 (271)
T COG5574 214 ADYKCFLCLEEPE---VPSCTPCG-----HLFCLSCLLISWTKKKY-EFCPLCRAK 260 (271)
T ss_pred cccceeeeecccC---Cccccccc-----chhhHHHHHHHHHhhcc-ccCchhhhh
Confidence 3467999998764 34678886 5667789988 876653 469999854
No 142
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.27 E-value=19 Score=31.11 Aligned_cols=34 Identities=24% Similarity=0.657 Sum_probs=27.8
Q ss_pred CccccccccCCCcceecHHHHHHHHHhhCCccccccc
Q 024114 33 NSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (272)
Q Consensus 33 ~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk 69 (272)
..+-.||.|+ .|+|..|-...+.++|...|---.
T Consensus 31 RRIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~ 64 (134)
T PF01440_consen 31 RRIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSR 64 (134)
T ss_pred CccccCCCCE---EEeecccCCCCcCCCcCccCCCcC
Confidence 3467899997 799999999999999987775543
No 143
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=20.23 E-value=48 Score=36.29 Aligned_cols=10 Identities=40% Similarity=0.849 Sum_probs=6.1
Q ss_pred CCCCcchhhh
Q 024114 161 TDDYPFALVT 170 (272)
Q Consensus 161 ~e~ysf~~~t 170 (272)
..+|||.++|
T Consensus 773 LtE~P~~Vvt 782 (960)
T KOG1189|consen 773 LTEWPFFVVT 782 (960)
T ss_pred cccCCceEEe
Confidence 3466666665
Done!