Query 024114
Match_columns 272
No_of_seqs 211 out of 762
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 6.1E-19 2.1E-23 128.0 3.8 56 16-74 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 2.6E-17 8.9E-22 125.4 5.9 69 12-81 9-77 (80)
3 2kiz_A E3 ubiquitin-protein li 98.2 1.9E-06 6.6E-11 61.2 4.9 55 14-75 10-64 (69)
4 2l0b_A E3 ubiquitin-protein li 98.1 1.5E-06 5.2E-11 65.8 3.8 55 13-74 35-89 (91)
5 2ect_A Ring finger protein 126 98.1 1.4E-06 4.9E-11 63.3 3.2 55 15-76 12-66 (78)
6 2ep4_A Ring finger protein 24; 98.1 4.3E-06 1.5E-10 60.1 5.7 51 16-73 13-63 (74)
7 1x4j_A Ring finger protein 38; 98.0 1.9E-06 6.6E-11 62.4 2.7 53 15-74 20-72 (75)
8 1iym_A EL5; ring-H2 finger, ub 97.9 2.8E-06 9.5E-11 57.7 1.9 51 16-73 3-54 (55)
9 1v87_A Deltex protein 2; ring- 97.9 8.2E-06 2.8E-10 63.2 4.5 53 18-75 25-95 (114)
10 2ecm_A Ring finger and CHY zin 97.9 8.1E-06 2.8E-10 55.2 3.0 50 17-73 4-54 (55)
11 2ct2_A Tripartite motif protei 97.7 3.6E-05 1.2E-09 56.4 4.7 54 16-74 13-68 (88)
12 2ea6_A Ring finger protein 4; 97.7 2.4E-05 8.3E-10 54.7 3.2 51 16-73 13-67 (69)
13 1chc_A Equine herpes virus-1 r 97.6 4.2E-05 1.4E-09 53.9 3.6 50 16-74 3-52 (68)
14 2ecl_A Ring-box protein 2; RNF 97.6 3.2E-05 1.1E-09 57.5 2.5 50 17-73 14-75 (81)
15 2d8t_A Dactylidin, ring finger 97.5 2.6E-05 9E-10 55.9 1.8 50 16-75 13-62 (71)
16 3ng2_A RNF4, snurf, ring finge 97.5 5.2E-05 1.8E-09 53.6 3.3 53 14-73 6-62 (71)
17 2xeu_A Ring finger protein 4; 97.5 3.6E-05 1.2E-09 53.1 2.4 51 17-74 2-56 (64)
18 2ct0_A Non-SMC element 1 homol 97.5 9.4E-05 3.2E-09 55.7 4.7 53 16-75 13-65 (74)
19 2ecn_A Ring finger protein 141 97.5 4.6E-05 1.6E-09 54.1 2.3 47 16-73 13-59 (70)
20 2ysl_A Tripartite motif-contai 97.5 6E-05 2.1E-09 53.6 2.8 51 15-73 17-68 (73)
21 2csy_A Zinc finger protein 183 97.4 0.00014 4.8E-09 53.2 4.6 49 15-73 12-60 (81)
22 2yur_A Retinoblastoma-binding 97.4 0.00011 3.9E-09 53.1 4.0 48 17-72 14-62 (74)
23 2ecv_A Tripartite motif-contai 97.4 0.00017 5.7E-09 52.1 4.7 51 16-74 17-71 (85)
24 2ecy_A TNF receptor-associated 97.4 8.3E-05 2.8E-09 52.4 2.9 49 16-73 13-61 (66)
25 2ecw_A Tripartite motif-contai 97.4 0.00016 5.5E-09 52.2 4.1 51 16-74 17-71 (85)
26 2djb_A Polycomb group ring fin 97.3 0.00022 7.5E-09 51.2 4.0 48 17-74 14-62 (72)
27 3ztg_A E3 ubiquitin-protein li 97.2 0.00025 8.6E-09 52.8 3.8 50 15-72 10-60 (92)
28 3dpl_R Ring-box protein 1; ubi 97.2 0.00018 6.1E-09 57.0 3.2 49 18-73 37-100 (106)
29 2ysj_A Tripartite motif-contai 97.2 0.00033 1.1E-08 48.7 3.8 46 15-68 17-63 (63)
30 2ecj_A Tripartite motif-contai 97.1 0.00026 9E-09 48.0 3.1 45 16-68 13-58 (58)
31 1t1h_A Gspef-atpub14, armadill 97.1 0.00036 1.2E-08 50.4 3.7 50 16-74 6-55 (78)
32 2egp_A Tripartite motif-contai 97.0 0.00017 5.9E-09 51.8 1.0 51 16-74 10-65 (79)
33 1g25_A CDK-activating kinase a 96.9 0.00047 1.6E-08 48.4 2.7 51 17-73 2-54 (65)
34 3lrq_A E3 ubiquitin-protein li 96.9 0.00054 1.8E-08 52.5 2.9 47 18-73 22-69 (100)
35 1jm7_A BRCA1, breast cancer ty 96.8 0.00076 2.6E-08 51.5 3.4 49 18-74 21-70 (112)
36 1e4u_A Transcriptional repress 96.8 0.001 3.5E-08 49.8 3.9 55 15-74 8-62 (78)
37 3fl2_A E3 ubiquitin-protein li 96.7 0.001 3.5E-08 52.3 3.6 48 18-74 52-99 (124)
38 4ap4_A E3 ubiquitin ligase RNF 96.7 0.00056 1.9E-08 53.0 1.7 52 16-74 5-60 (133)
39 4ayc_A E3 ubiquitin-protein li 96.7 0.00053 1.8E-08 55.3 1.6 45 19-73 54-98 (138)
40 3hct_A TNF receptor-associated 96.6 0.00084 2.9E-08 52.6 2.6 52 14-74 14-65 (118)
41 4a0k_B E3 ubiquitin-protein li 96.6 0.0004 1.4E-08 56.3 0.3 49 18-73 48-111 (117)
42 2y43_A E3 ubiquitin-protein li 96.6 0.00093 3.2E-08 50.5 2.2 47 18-74 22-69 (99)
43 2ckl_B Ubiquitin ligase protei 96.5 0.0012 4.2E-08 54.3 2.7 46 19-73 55-101 (165)
44 1z6u_A NP95-like ring finger p 96.3 0.0023 7.9E-08 52.8 3.3 49 18-75 78-126 (150)
45 3k1l_B Fancl; UBC, ring, RWD, 96.2 0.0019 6.5E-08 61.9 2.9 59 15-76 305-375 (381)
46 2ckl_A Polycomb group ring fin 96.1 0.0016 5.6E-08 50.0 1.6 48 17-74 14-62 (108)
47 1rmd_A RAG1; V(D)J recombinati 96.1 0.0039 1.3E-07 48.3 3.4 48 18-74 23-70 (116)
48 4ap4_A E3 ubiquitin ligase RNF 96.0 0.0027 9.3E-08 49.0 2.2 52 16-74 70-125 (133)
49 2y1n_A E3 ubiquitin-protein li 95.7 0.0064 2.2E-07 58.3 3.8 47 19-74 333-379 (389)
50 3l11_A E3 ubiquitin-protein li 95.5 0.0019 6.6E-08 50.0 -0.3 48 17-73 14-61 (115)
51 3nw0_A Non-structural maintena 94.7 0.021 7.2E-07 50.9 3.9 50 16-73 178-228 (238)
52 3hcs_A TNF receptor-associated 94.7 0.012 4.1E-07 48.4 2.1 51 15-74 15-65 (170)
53 2vje_B MDM4 protein; proto-onc 94.7 0.013 4.6E-07 41.4 2.0 50 16-73 5-55 (63)
54 1jm7_B BARD1, BRCA1-associated 94.4 0.0087 3E-07 46.7 0.5 45 17-73 21-66 (117)
55 4ic3_A E3 ubiquitin-protein li 94.2 0.009 3.1E-07 43.4 0.2 43 18-74 24-67 (74)
56 2c2l_A CHIP, carboxy terminus 94.1 0.03 1E-06 48.2 3.5 48 17-73 207-254 (281)
57 2vje_A E3 ubiquitin-protein li 93.6 0.03 1E-06 39.7 2.0 47 17-73 7-56 (64)
58 2ea5_A Cell growth regulator w 93.4 0.067 2.3E-06 38.5 3.7 50 12-75 9-59 (68)
59 2kr4_A Ubiquitin conjugation f 92.8 0.1 3.6E-06 38.9 4.0 47 17-73 13-59 (85)
60 3knv_A TNF receptor-associated 92.7 0.024 8.1E-07 46.3 0.3 48 16-72 29-76 (141)
61 2kre_A Ubiquitin conjugation f 92.3 0.09 3.1E-06 40.6 3.1 48 17-74 28-75 (100)
62 2ecg_A Baculoviral IAP repeat- 92.2 0.07 2.4E-06 38.5 2.3 42 19-74 26-68 (75)
63 1wim_A KIAA0161 protein; ring 91.8 0.088 3E-06 39.4 2.6 49 17-72 4-62 (94)
64 1bor_A Transcription factor PM 91.4 0.058 2E-06 37.0 1.1 45 16-73 4-48 (56)
65 2yu4_A E3 SUMO-protein ligase 91.3 0.18 6.1E-06 38.1 3.8 49 15-71 4-59 (94)
66 2f42_A STIP1 homology and U-bo 90.7 0.12 4.1E-06 44.5 2.6 50 16-74 104-153 (179)
67 1wgm_A Ubiquitin conjugation f 89.6 0.23 7.8E-06 38.2 3.1 49 17-74 21-69 (98)
68 3t6p_A Baculoviral IAP repeat- 86.9 0.11 3.6E-06 48.8 -0.4 45 17-75 294-339 (345)
69 2yho_A E3 ubiquitin-protein li 83.6 0.28 9.5E-06 36.1 0.6 44 18-75 18-62 (79)
70 2ku3_A Bromodomain-containing 81.0 0.35 1.2E-05 35.7 0.3 56 12-70 10-65 (71)
71 2bay_A PRE-mRNA splicing facto 77.9 1.2 4.2E-05 31.4 2.3 45 19-73 4-49 (61)
72 2lri_C Autoimmune regulator; Z 77.7 0.86 2.9E-05 33.1 1.5 51 13-71 7-59 (66)
73 3htk_C E3 SUMO-protein ligase 77.2 0.92 3.1E-05 41.7 1.9 49 17-73 180-231 (267)
74 1weo_A Cellulose synthase, cat 75.1 5.1 0.00018 31.6 5.3 56 17-75 15-71 (93)
75 2l43_A N-teminal domain from h 70.9 0.7 2.4E-05 35.2 -0.5 54 15-71 22-75 (88)
76 1wev_A Riken cDNA 1110020M19; 62.3 0.85 2.9E-05 34.7 -1.6 54 18-74 16-75 (88)
77 2yt5_A Metal-response element- 56.3 1.1 3.8E-05 31.6 -1.7 53 15-70 3-60 (66)
78 2ko5_A Ring finger protein Z; 49.5 7.3 0.00025 31.0 1.8 49 19-78 29-77 (99)
79 1wen_A Inhibitor of growth fam 45.7 3.5 0.00012 30.2 -0.5 54 10-71 8-65 (71)
80 2lbm_A Transcriptional regulat 45.0 13 0.00045 30.9 2.8 48 14-69 59-115 (142)
81 2byk_A Chrac-16; nucleosome sl 44.4 4.7 0.00016 33.4 0.0 25 133-157 41-65 (140)
82 2ysm_A Myeloid/lymphoid or mix 44.1 3.4 0.00012 31.9 -0.9 50 14-68 3-54 (111)
83 1wep_A PHF8; structural genomi 44.0 20 0.0007 26.1 3.5 54 16-74 10-66 (79)
84 3iab_B Ribonucleases P/MRP pro 42.7 5.1 0.00017 33.6 -0.0 21 245-265 105-125 (140)
85 1weu_A Inhibitor of growth fam 42.2 4.5 0.00015 31.3 -0.4 51 13-71 31-85 (91)
86 2l5u_A Chromodomain-helicase-D 42.0 7.2 0.00025 27.4 0.7 47 16-70 9-57 (61)
87 2k16_A Transcription initiatio 41.8 3.2 0.00011 30.0 -1.3 52 17-73 17-70 (75)
88 3cx5_F Cytochrome B-C1 complex 41.1 5.2 0.00018 33.8 -0.2 18 252-269 60-77 (146)
89 3ql9_A Transcriptional regulat 38.3 16 0.00056 29.8 2.4 49 13-69 52-109 (129)
90 3u5n_A E3 ubiquitin-protein li 36.7 3.9 0.00013 34.9 -1.7 50 16-73 5-56 (207)
91 1f62_A Transcription factor WS 35.9 8.5 0.00029 25.7 0.2 46 20-70 2-49 (51)
92 2ri7_A Nucleosome-remodeling f 35.7 6.3 0.00022 32.3 -0.5 53 15-72 5-60 (174)
93 3v43_A Histone acetyltransfera 35.3 18 0.00063 28.0 2.1 36 17-55 4-43 (112)
94 4fp9_B Mterf domain-containing 34.2 8.5 0.00029 35.7 0.0 17 205-221 254-270 (335)
95 2vpb_A Hpygo1, pygopus homolog 33.1 17 0.00057 26.1 1.4 52 13-69 3-64 (65)
96 2yql_A PHD finger protein 21A; 32.8 3.2 0.00011 28.6 -2.4 49 14-70 5-55 (56)
97 2vnf_A ING 4, P29ING4, inhibit 30.5 2.8 9.7E-05 29.6 -3.0 49 14-70 6-58 (60)
98 1xwh_A Autoimmune regulator; P 30.2 4.9 0.00017 28.6 -1.9 49 14-70 4-54 (66)
99 3o36_A Transcription intermedi 29.7 6.2 0.00021 32.9 -1.6 49 16-72 2-52 (184)
100 4gne_A Histone-lysine N-methyl 27.6 15 0.00052 29.0 0.4 49 12-68 9-59 (107)
101 4h33_A LMO2059 protein; bilaye 26.8 78 0.0027 25.0 4.5 44 186-229 55-98 (137)
102 2jny_A Uncharacterized BCR; st 26.5 19 0.00065 26.4 0.7 39 34-82 10-48 (67)
103 2k1e_A Water soluble analogue 25.2 54 0.0018 24.6 3.1 46 187-232 53-98 (103)
104 2e6r_A Jumonji/ARID domain-con 25.1 5.7 0.0002 30.3 -2.4 50 17-71 15-66 (92)
105 2qks_A KIR3.1-prokaryotic KIR 23.3 1.3E+02 0.0045 27.4 6.0 49 185-233 89-137 (321)
106 1we9_A PHD finger family prote 22.1 14 0.00046 25.7 -0.8 53 15-71 3-58 (64)
107 2a9h_A Voltage-gated potassium 22.0 1.2E+02 0.0042 24.6 5.0 46 187-232 97-142 (155)
108 2g6q_A Inhibitor of growth pro 21.0 5.4 0.00019 28.4 -3.1 49 14-70 7-59 (62)
109 2jmi_A Protein YNG1, ING1 homo 20.6 9 0.00031 29.5 -2.1 49 16-70 24-75 (90)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.74 E-value=6.1e-19 Score=128.04 Aligned_cols=56 Identities=36% Similarity=0.748 Sum_probs=50.4
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
++...||||+++.. ++++.||+|+||+||||+.||++|++++++.+||+|+++|++
T Consensus 4 ~~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46789999998743 358999999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=125.44 Aligned_cols=69 Identities=30% Similarity=0.734 Sum_probs=58.3
Q ss_pred CCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccCccCCCC
Q 024114 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSK 81 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~yt~p~~ 81 (272)
...+.....|+||+++.++ .++++.||+|+|+++++|..||++|+..+++.+||+|++.|.+..+.+|+
T Consensus 9 s~~~~~~~~C~IC~~~~~~-~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDD-ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCS-SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCCCCeEcCccccC-CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 3445567899999987654 35689999999999999999999999999989999999999877665554
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.17 E-value=1.9e-06 Score=61.21 Aligned_cols=55 Identities=24% Similarity=0.585 Sum_probs=42.2
Q ss_pred CCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
..+....|.||++.-.........||. +.+|..|+.+|+..++ +|++|++.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 345678999998876544455678875 6799999999998754 699999887643
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.13 E-value=1.5e-06 Score=65.84 Aligned_cols=55 Identities=25% Similarity=0.637 Sum_probs=41.9
Q ss_pred CCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 13 s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
...+....|-||++.-.+.......||. +.+|..|+.+|+..+ .+|++|++.+.+
T Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 35 GAVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred cccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 3445778999999876544344567865 689999999999754 489999988754
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.11 E-value=1.4e-06 Score=63.28 Aligned_cols=55 Identities=20% Similarity=0.535 Sum_probs=41.5
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccCc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGY 76 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~y 76 (272)
.+....|.||++.-.+.......||. +.+|..|+.+|+..+ .+|++|++.+...-
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCcc
Confidence 34668999999876544334556875 679999999999754 58999999886443
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=4.3e-06 Score=60.14 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=39.3
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+....|.||++.-.+.....+.||. +.+|..|+.+|++.+. +|++|++.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccc
Confidence 4567999999886544333445764 6799999999998764 8999998875
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=1.9e-06 Score=62.42 Aligned_cols=53 Identities=25% Similarity=0.576 Sum_probs=40.9
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
......|.||++.-.+.......||. +..|..|+.+|+..+ .+|++|++.+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 44678999999876544334567875 689999999999875 489999988753
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.94 E-value=2.8e-06 Score=57.72 Aligned_cols=51 Identities=22% Similarity=0.537 Sum_probs=39.0
Q ss_pred CCCCceeEeccCcccCCCccccc-cccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~P-C~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
++...|-||++.-.++......| |. +..|..|+.+|++. +.+|++|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 35678999998865544455666 64 67999999999976 458999997764
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.93 E-value=8.2e-06 Score=63.22 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=39.0
Q ss_pred CCceeEeccCcccCC------------Ccc---ccccccCCCcceecHHHHHHHHHh---hCCccccccccccccC
Q 024114 18 TSHCRICHEEEFESC------------NSL---EAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEYGPG 75 (272)
Q Consensus 18 ~~~CRIC~eeeees~------------~~L---i~PC~C~GSlkyVH~~CL~rWl~~---kg~~~CEICk~~Y~~~ 75 (272)
...|-||++.-.+.. ... ..||. +..|..||.+|+.. +...+|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999988743211 011 56776 68999999999975 4567999999998644
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.86 E-value=8.1e-06 Score=55.22 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=39.3
Q ss_pred CCCceeEeccCccc-CCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFE-SCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeee-s~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
....|.||++.-.+ .......||. +.+|..|+.+|+..+ .+|++|++.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 56789999987533 2345678875 689999999999887 68999997764
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=3.6e-05 Score=56.40 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=41.8
Q ss_pred CCCCceeEeccCcccCC-CccccccccCCCcceecHHHHHHHHHhh-CCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESC-NSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~-~~Li~PC~C~GSlkyVH~~CL~rWl~~k-g~~~CEICk~~Y~~ 74 (272)
.+...|.||++.-.+.. .+...||. +.+|..|+.+|++.+ +..+|++|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45678999998754422 25677875 689999999999876 46899999988753
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=2.4e-05 Score=54.73 Aligned_cols=51 Identities=20% Similarity=0.410 Sum_probs=38.9
Q ss_pred CCCCceeEeccCcccC----CCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees----~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.....|-||++.-.+. ......||. +.+|..|+.+|+.. +..|++|++.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 4678899999875432 112567775 68999999999987 458999998875
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.60 E-value=4.2e-05 Score=53.91 Aligned_cols=50 Identities=28% Similarity=0.640 Sum_probs=39.2
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
+....|.||++...+ .....||. +..|..|+.+|+..+ .+|++|++.+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 456789999987643 23678875 679999999999765 589999988763
No 14
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=3.2e-05 Score=57.52 Aligned_cols=50 Identities=20% Similarity=0.562 Sum_probs=36.6
Q ss_pred CCCceeEeccCccc-----------CCCccccc-cccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFE-----------SCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeee-----------s~~~Li~P-C~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+...|-||++.-.+ +......| |. +..|..||.+|+..++ +|++|++.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQNN--RCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTCC--BCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhCC--CCCCcCCCcc
Confidence 45679999876533 12233444 54 7899999999998764 9999998875
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=2.6e-05 Score=55.91 Aligned_cols=50 Identities=22% Similarity=0.501 Sum_probs=39.5
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
.....|.||++... ++...||. +.+|..|+.+|+..+ ..|++|++.+...
T Consensus 13 ~~~~~C~IC~~~~~---~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCV---HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCS---SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccC---CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 45678999998754 34677875 679999999999764 6999999988643
No 16
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.53 E-value=5.2e-05 Score=53.57 Aligned_cols=53 Identities=21% Similarity=0.444 Sum_probs=40.2
Q ss_pred CCCCCCceeEeccCcccC----CCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 14 NPETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees----~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.+++...|-||++.-.++ ......||. +..|..|+.+|+..+ .+|++|++.+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 345678999999874331 222567776 679999999999876 49999998876
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.53 E-value=3.6e-05 Score=53.11 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=38.5
Q ss_pred CCCceeEeccCcccC----CCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 17 TTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 17 ~~~~CRIC~eeeees----~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
+...|.||++.-.++ ......||. +..|..|+.+|+.. +.+|++|++.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 467899999875432 222567776 67999999999987 4599999988763
No 18
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.51 E-value=9.4e-05 Score=55.68 Aligned_cols=53 Identities=17% Similarity=0.488 Sum_probs=39.7
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
+....|-||++.-... ..-+ .|. .-.|..||.+|++.+++.+|++|++.++..
T Consensus 13 ~~i~~C~IC~~~i~~g---~~C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG---QSCE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSS---EECS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccC---CccC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4568999998876432 2222 453 568999999999988788999999888643
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=4.6e-05 Score=54.09 Aligned_cols=47 Identities=28% Similarity=0.699 Sum_probs=38.6
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.....|.||++...+ ...||. +.+|..|+.+|+. ...+|++|++.+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC----cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCccc
Confidence 456899999987643 678885 6799999999998 4679999998876
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=6e-05 Score=53.65 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=39.9
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh-hCCccccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE-KGNTTCEICLQEYG 73 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~-kg~~~CEICk~~Y~ 73 (272)
......|.||++.-. ++...||. +.+|..|+.+|++. ++...|++|++.+.
T Consensus 17 ~~~~~~C~IC~~~~~---~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQ---KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCS---SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccC---CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 346689999998754 34566775 67999999999975 45679999998875
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00014 Score=53.19 Aligned_cols=49 Identities=22% Similarity=0.469 Sum_probs=38.9
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.+....|.||++.-.+ +.+.||. +..|..|+.+|+.. ...|++|++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3456789999887643 4678886 57899999999975 558999998875
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.42 E-value=0.00011 Score=53.15 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=39.3
Q ss_pred CCCceeEeccCcccCCCccccc-cccCCCcceecHHHHHHHHHhhCCcccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~P-C~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y 72 (272)
....|.||++.-. ++...| |. +..|..|+.+|+..++...|++|++++
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMT---DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCT---TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHh---CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 4578999988754 346777 65 679999999999988878999999864
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00017 Score=52.06 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=40.5
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh----hCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE----KGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~----kg~~~CEICk~~Y~~ 74 (272)
.....|.||++.-.+ +...||. +.+|..|+.+|+.. .+...|++|++.+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC---ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456899999987643 4566875 57899999999987 357899999988864
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=8.3e-05 Score=52.42 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=38.4
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.+...|.||++.-.+ +...||. +..|..|+.+|+. +++..|++|++.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcC---eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 466889999877543 3557776 5689999999997 45678999998875
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.36 E-value=0.00016 Score=52.16 Aligned_cols=51 Identities=27% Similarity=0.486 Sum_probs=40.5
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh----CCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK----GNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k----g~~~CEICk~~Y~~ 74 (272)
.....|.||++.-.+ +...||. +.+|..|+.+|+..+ +...|++|++.+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc---ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 356789999887543 4677875 678999999999884 47899999988764
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00022 Score=51.17 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=37.4
Q ss_pred CCCceeEeccCcccCCCccc-cccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLE-APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li-~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
+...|.||++.-.+ +.. .||. +..|..|+.+|++. ...|++|++.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 45789999887643 344 4876 67899999999976 4689999988763
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.21 E-value=0.00025 Score=52.77 Aligned_cols=50 Identities=24% Similarity=0.483 Sum_probs=40.6
Q ss_pred CCCCCceeEeccCcccCCCccccc-cccCCCcceecHHHHHHHHHhhCCcccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~P-C~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y 72 (272)
-...-.|-||++.-. ++...| |. +..+..||.+|+..++...|++|++.+
T Consensus 10 ~~~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMT---DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECS---SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhc---CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 346689999997654 346778 64 678999999999988889999999886
No 28
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.20 E-value=0.00018 Score=56.97 Aligned_cols=49 Identities=24% Similarity=0.622 Sum_probs=35.8
Q ss_pred CCceeEeccCcccC---------------CCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 18 TSHCRICHEEEFES---------------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 18 ~~~CRIC~eeeees---------------~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
...|-||++.-.+. ......||. +..|..||.+|+.. +.+|++|++.|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 46799998764321 112345665 78999999999986 468999998875
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00033 Score=48.74 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=35.8
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh-CCcccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEIC 68 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k-g~~~CEIC 68 (272)
.++...|.||++.-.+ +...||. +..|..|+.+|++.+ +..+|++|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3466899999987643 4666875 679999999999864 56789988
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00026 Score=48.00 Aligned_cols=45 Identities=24% Similarity=0.672 Sum_probs=35.3
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh-hCCcccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE-KGNTTCEIC 68 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~-kg~~~CEIC 68 (272)
.+...|.||++.-.+ +...||. +..|..|+.+|+.. +++.+|++|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 466899999987653 3567875 56899999999875 467889988
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.11 E-value=0.00036 Score=50.39 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=39.5
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
...-.|.||++.-. ++...||. +..++.|+.+|+.. +..+|++|++.+..
T Consensus 6 ~~~~~C~IC~~~~~---~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMK---DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCS---SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred cccCCCCCcccccc---CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 46789999988654 34677875 67899999999964 56899999988753
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.98 E-value=0.00017 Score=51.84 Aligned_cols=51 Identities=29% Similarity=0.537 Sum_probs=40.1
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh-----CCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-----GNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k-----g~~~CEICk~~Y~~ 74 (272)
.+...|.||++.-.+ +...||. +.+|..|+.+|+..+ +...|++|++.+..
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC---eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 467889999987543 4567875 678999999999873 47899999988763
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.90 E-value=0.00047 Score=48.37 Aligned_cols=51 Identities=14% Similarity=0.321 Sum_probs=37.0
Q ss_pred CCCceeEecc-CcccCCC-ccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHE-EEFESCN-SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~e-eeees~~-~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+...|-||++ ...++.. .+..||. +.+|..|+.+|+.. +...|++|++.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 3567999998 3322211 1457876 57899999999874 4678999998875
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.85 E-value=0.00054 Score=52.47 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=38.2
Q ss_pred CCceeEeccCcccCCCccc-cccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLE-APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li-~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
...|-||++.-.+ +.. .||. +..|..||.+|+..++ ..|++|+..+.
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred CCCCccCCccccC---ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCC
Confidence 4689999987643 455 7876 6799999999999875 68999998885
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.81 E-value=0.00076 Score=51.47 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=38.3
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh-CCcccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k-g~~~CEICk~~Y~~ 74 (272)
...|.||++.-.+ +...||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 21 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcC---eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4579999886543 4567875 678999999999875 45789999988764
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.79 E-value=0.001 Score=49.78 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=42.2
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
.++...|-||++.-.. .+....||.|. +.+++.|+.+|... ++..|++|++.|..
T Consensus 8 ~~~~~~CpICle~~~~-~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEI-DDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCT-TTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCcc-ccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3567899999996532 23567888884 56899999999754 56899999999863
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.72 E-value=0.001 Score=52.32 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=37.6
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
...|.||++.-. ++...||. +..|..|+.+|+. .+...|++|++.+..
T Consensus 52 ~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF---RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS---SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc---CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 367999988754 34667875 5789999999998 445699999988863
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.67 E-value=0.00056 Score=52.95 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=39.5
Q ss_pred CCCCceeEeccCcccC----CCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees----~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
.+...|-||++.-.++ ......||. +..|..|+.+|+..+. +|++|++.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCcc
Confidence 4667899999875432 222667876 6899999999997654 99999988853
No 39
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.66 E-value=0.00053 Score=55.27 Aligned_cols=45 Identities=29% Similarity=0.634 Sum_probs=36.0
Q ss_pred CceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
..|.||++.-. ++...||. +..|..|+.+|+..+ ..||+|++.+.
T Consensus 54 ~~C~iC~~~~~---~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFI---EAVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCS---SEEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCC
T ss_pred CCCcccCcccC---CceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 46999988754 34677875 689999999999754 58999998774
No 40
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.64 E-value=0.00084 Score=52.63 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=40.1
Q ss_pred CCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
.-.....|.||++.-.+ +...||. +..+..|+.+|+..++. +|++|+..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcC---eEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 33456799999976543 4667765 67999999999987754 89999988764
No 41
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.57 E-value=0.0004 Score=56.26 Aligned_cols=49 Identities=24% Similarity=0.638 Sum_probs=0.4
Q ss_pred CCceeEeccCcccC---------------CCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 18 TSHCRICHEEEFES---------------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 18 ~~~CRIC~eeeees---------------~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
...|-||++.-.+. ...+..||. +..|..|+.+|+..+ .+|++|++.|.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeee
Confidence 36899998764321 111223554 689999999999884 58999998875
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.56 E-value=0.00093 Score=50.51 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=36.4
Q ss_pred CCceeEeccCcccCCCcccc-ccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~-PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
...|.||++.-.+ +... ||. +..|..|+.+|+..+ ..|++|++.+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 3689999887543 3444 776 679999999999854 699999988763
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.49 E-value=0.0012 Score=54.33 Aligned_cols=46 Identities=24% Similarity=0.472 Sum_probs=36.0
Q ss_pred CceeEeccCcccCCCcccc-ccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 19 SHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~-PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
..|-||++.-.+ +... ||. +.+|..|+.+|+.. +...|++|+..+.
T Consensus 55 ~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCcccChHhhC---cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 489999887543 3444 776 68999999999984 4678999998874
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0023 Score=52.85 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=38.4
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
...|.||++.-. ++...||. +.++..|+.+|+.. +...|++|+..+...
T Consensus 78 ~~~C~IC~~~~~---~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS---SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc---CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 368999988654 34677886 57899999999985 456899999888643
No 45
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.24 E-value=0.0019 Score=61.91 Aligned_cols=59 Identities=17% Similarity=0.524 Sum_probs=42.1
Q ss_pred CCCCCceeEeccCcccCCCccccccc---cCCCcceecHHHHHHHHHhhCC---------ccccccccccccCc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCA---CSGTVKFAHRDCIQRWCYEKGN---------TTCEICLQEYGPGY 76 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~---C~GSlkyVH~~CL~rWl~~kg~---------~~CEICk~~Y~~~y 76 (272)
.+....|-||++.-.++...-...|. |+ +..|..||.+|++..++ ..|+.|+++....+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 34678999999876542222235564 54 68999999999987543 58999998776444
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.15 E-value=0.0016 Score=49.99 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=37.5
Q ss_pred CCCceeEeccCcccCCCcccc-ccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~-PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
....|.||++.-.+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC---cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 45689999887543 3554 876 678999999999865 799999988763
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.07 E-value=0.0039 Score=48.32 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=37.8
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
...|.||++.-.+ +...||. +..|..|+.+|+..+ ...|++|+..+..
T Consensus 23 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC---cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 4689999887643 4667875 678999999999874 4589999988764
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.99 E-value=0.0027 Score=49.00 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=38.1
Q ss_pred CCCCceeEeccCcccC----CCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees----~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
+....|-||++.-.+. ......||. +..|..|+.+|+..+ .+|++|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 4678899998764321 112455664 689999999999875 499999988863
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.68 E-value=0.0064 Score=58.35 Aligned_cols=47 Identities=23% Similarity=0.632 Sum_probs=38.0
Q ss_pred CceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
..|.||++... ++...||. +..|..|+.+|+.. +...|++|++.+..
T Consensus 333 ~~C~ICle~~~---~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK---DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC---CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCccCcCCC---CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 68999988764 35789987 45699999999984 45689999988763
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.55 E-value=0.0019 Score=50.00 Aligned_cols=48 Identities=21% Similarity=0.530 Sum_probs=37.6
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+...|.||++.-. ++...||. +..+..|+.+|+.. ++..|++|++.+.
T Consensus 14 ~~~~C~iC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILV---EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCS---SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCH
T ss_pred CCCCCccCCcccC---ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccC
Confidence 3467999997754 34667876 67999999999964 4578999998875
No 51
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.74 E-value=0.021 Score=50.92 Aligned_cols=50 Identities=20% Similarity=0.613 Sum_probs=38.6
Q ss_pred CCCCceeEeccCcccCCCccccccc-cCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~-C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+....|-||.+--..+ .-|. |. .-.|..|+.+|++.+++..|+.|+..++
T Consensus 178 ~~i~~C~iC~~iv~~g-----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG-----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TTCCBCTTTCSBCSSC-----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCCcCcchhhHHhCC-----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3578999998765421 2232 54 5799999999999988899999998875
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=94.71 E-value=0.012 Score=48.42 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=39.1
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
-++.-.|-||++.-.+ +...||. ..+...|+.+|+..++. +|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcC---cEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 3456789999887543 4666764 67899999999987653 89999988764
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.66 E-value=0.013 Score=41.43 Aligned_cols=50 Identities=16% Similarity=0.419 Sum_probs=36.0
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcce-ecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlky-VH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+....|.||++...+.. .+..||. +. +-..|+.+|.+.+ .+|++|++++.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 45678999998764321 1234987 33 5789999998653 68999998875
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.38 E-value=0.0087 Score=46.71 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=35.5
Q ss_pred CCCceeEeccCcccCCCcccc-ccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~-PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
....|.||++.-.+ +... ||. +..+..|+.+|+. ..|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC---ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 34789999887643 4555 875 6789999999987 68999998874
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.21 E-value=0.009 Score=43.37 Aligned_cols=43 Identities=19% Similarity=0.615 Sum_probs=34.5
Q ss_pred CCceeEeccCcccCCCccccccccCCCcce-ecHHHHHHHHHhhCCcccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlky-VH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
...|.||++... ++...||. +. ....|+.+| ..|++|++.+..
T Consensus 24 ~~~C~iC~~~~~---~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI---AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC---CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC---CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 468999998754 35677986 55 899999999 689999988763
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.15 E-value=0.03 Score=48.15 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=37.8
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
..-.|-||++--. +|.+.||. +-.-+.|+.+|+...+.. ||+|+.++.
T Consensus 207 ~~~~c~i~~~~~~---dPv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCS---SEEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCC
T ss_pred cccCCcCcCCHhc---CCeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCc
Confidence 5678999987654 45889974 467799999999876544 999998875
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.60 E-value=0.03 Score=39.69 Aligned_cols=47 Identities=19% Similarity=0.397 Sum_probs=34.7
Q ss_pred CCCceeEeccCcccCCCcccc--ccccCCCcce-ecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEA--PCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~--PC~C~GSlky-VH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
+...|.||++...+ .... ||. +. +=..|+.+|.+. +..|++|++++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 55789999987643 3444 986 33 348999999964 458999998875
No 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.45 E-value=0.067 Score=38.54 Aligned_cols=50 Identities=20% Similarity=0.511 Sum_probs=36.0
Q ss_pred CCCCCCCCceeEeccCcccCCCccccccccCCCcce-ecHHHHHHHHHhhCCccccccccccccC
Q 024114 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlky-VH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
+...++...|.||++... +....||. +. +-..|+.+ ...|++|++.+...
T Consensus 9 e~~~~~~~~C~IC~~~~~---~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTV---NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSCCCSSCCSSSSSSCC---CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred cccCCCCCCCCCcCcCCC---CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 334456789999998764 45789997 23 56788873 36899999887643
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=92.82 E-value=0.1 Score=38.85 Aligned_cols=47 Identities=13% Similarity=0.050 Sum_probs=37.4
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
..-.|-||++--. ++.+.||. +-.-+.|+.+|+.. +.+|++|++++.
T Consensus 13 ~~~~CpI~~~~m~---dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMT---DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCC
T ss_pred hheECcccCchhc---CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCC
Confidence 6688999987653 35788864 46789999999985 468999998875
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=92.67 E-value=0.024 Score=46.35 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=36.9
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y 72 (272)
+..-.|-||++.-.+ +...||. +..++.|+.+|+.. +..+|++|+...
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcC---cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 355789999887543 4667776 57899999999964 456899999754
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=92.26 E-value=0.09 Score=40.65 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=37.7
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
..-.|-||++--. +|.+.||. +-.-+.|+.+|+.. +.+|++|++++..
T Consensus 28 ~~~~CpI~~~~m~---dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMT---DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCS---SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred HhhCCcCccCccc---CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 5678999977643 45888864 56889999999974 5799999988763
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.22 E-value=0.07 Score=38.50 Aligned_cols=42 Identities=19% Similarity=0.630 Sum_probs=32.0
Q ss_pred CceeEeccCcccCCCccccccccCCCcce-ecHHHHHHHHHhhCCcccccccccccc
Q 024114 19 SHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~PC~C~GSlky-VH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
..|.||++... ++...||. +. +...|+++. ..|++|++++..
T Consensus 26 ~~C~IC~~~~~---~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNI---AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCC---CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCcCCCCCC---CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 57999998754 35678986 45 789998643 689999988764
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.83 E-value=0.088 Score=39.38 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=36.4
Q ss_pred CCCceeEeccCcccCCCccc--cccccCCCcceecHHHHHHHHHhh---C---Cccccc--ccccc
Q 024114 17 TTSHCRICHEEEFESCNSLE--APCACSGTVKFAHRDCIQRWCYEK---G---NTTCEI--CLQEY 72 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li--~PC~C~GSlkyVH~~CL~rWl~~k---g---~~~CEI--Ck~~Y 72 (272)
+...|-||++.-..+ .++ .||. +..-+.|+.+++..+ + ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE--QMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGG--GEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccc--cceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 467899999875432 233 4787 579999999999764 2 469999 99773
No 64
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.45 E-value=0.058 Score=36.97 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=34.1
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
.+...|.||++.-.+ +...||. +..+..|+.+| ...|++|++.+.
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC---eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEee
Confidence 356789999887643 4678876 45788998773 568999998775
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.33 E-value=0.18 Score=38.08 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=37.1
Q ss_pred CCCCCceeEeccCcccCCCccccc-cccCCCcceecHHHHHHHHHhh----CCccccc--cccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEK----GNTTCEI--CLQE 71 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~P-C~C~GSlkyVH~~CL~rWl~~k----g~~~CEI--Ck~~ 71 (272)
+...-.|-||++--. +|...| |. +-.-+.||.+|+... +..+|++ |.+.
T Consensus 4 ~~~~~~CPI~~~~~~---dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMK---KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCS---SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhc---CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 346678999987643 357776 75 567899999999875 4679999 8865
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=90.73 E-value=0.12 Score=44.53 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=38.8
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
...-.|-||++--. +|.+.||. +-.=+.|+.+|+...+. +||+|+.++..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 35678999977643 35788874 56789999999987665 79999988763
No 67
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=89.64 E-value=0.23 Score=38.21 Aligned_cols=49 Identities=12% Similarity=-0.002 Sum_probs=37.5
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~ 74 (272)
..-.|-||++--. ++.+.||. | +-.-+.||.+|+.. +.+|++|++++..
T Consensus 21 ~~~~CpI~~~~m~---dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC---DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS---SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred HhcCCcCcccccc---CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 5678999987653 35788865 1 35779999999986 4689999988763
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.94 E-value=0.11 Score=48.80 Aligned_cols=45 Identities=20% Similarity=0.609 Sum_probs=35.4
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcce-ecHHHHHHHHHhhCCccccccccccccC
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlky-VH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
+...|.||++... ++...||. +. +...|+.+| ..|++|+..+...
T Consensus 294 ~~~~C~IC~~~~~---~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV---SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC---CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC---ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 3478999998764 35677987 45 889999998 6899999888643
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=83.56 E-value=0.28 Score=36.14 Aligned_cols=44 Identities=27% Similarity=0.622 Sum_probs=33.0
Q ss_pred CCceeEeccCcccCCCccccccccCCCcce-ecHHHHHHHHHhhCCccccccccccccC
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlky-VH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
...|.||++... ++...||. +. +=..|+.+| ..|++|++.+...
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC---cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 368999988754 35778987 23 457898877 3999999988643
No 70
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=80.98 E-value=0.35 Score=35.71 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=37.2
Q ss_pred CCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCcccccccc
Q 024114 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~ 70 (272)
.+...+...|.||...+.++.+.|+. |. +=-+.+|..|+.--..-+|.+.|+.|..
T Consensus 10 ~~~~~~~~~C~vC~~~~s~~~~~ll~-CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDGESQNSNVILF-CD--MCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCCSSCSCSSSCCCCCCSSSCEEE-CS--SSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCEEE-CC--CCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45556778999998775333344442 32 2236899999874444467899999974
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=77.91 E-value=1.2 Score=31.37 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=32.0
Q ss_pred CceeEeccCcccCCCcccc-ccccCCCcceecHHHHHHHHHhhCCccccccccccc
Q 024114 19 SHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~-PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~ 73 (272)
-.|.||++--. ++.+. ||. .-.=+.|+.+|+...+ +|+++++++.
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred EEecCCCCCCC---CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCC
Confidence 45777766543 34555 433 4678999999998765 5999998775
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=77.67 E-value=0.86 Score=33.15 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=35.4
Q ss_pred CCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCccccccccc
Q 024114 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (272)
Q Consensus 13 s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~~ 71 (272)
..+.....|.||.+.. .|+ -|. +=-+..|..||.-.+.. ++.+.|+.|...
T Consensus 7 ~~~~~~~~C~vC~~~~-----~ll-~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 7 QNLAPGARCGVCGDGT-----DVL-RCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTCCCTTTSCCT-----TCE-ECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred cCCCCCCCcCCCCCCC-----eEE-ECC--CCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3444667899997543 133 233 33479999999877766 478999999743
No 73
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=77.24 E-value=0.92 Score=41.66 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=36.7
Q ss_pred CCCceeEeccCcccCCCcccc-ccccCCCcceecHHHHHHHHHhhCCccccc--cccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEI--CLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~-PC~C~GSlkyVH~~CL~rWl~~kg~~~CEI--Ck~~Y~ 73 (272)
..-.|-||++--.+ |..+ .|. +-.=+.|+.+|+...+...|++ |++.+.
T Consensus 180 ~el~CPIcl~~f~D---PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEA---PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSS---EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccC---CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45789999775432 3442 554 5678999999998878899999 998775
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=75.09 E-value=5.1 Score=31.56 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=37.0
Q ss_pred CCCceeEeccCc-ccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccC
Q 024114 17 TTSHCRICHEEE-FESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (272)
Q Consensus 17 ~~~~CRIC~eee-ees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~ 75 (272)
...+|.||-++- ...++.+..-|.=.+ --|=+.|++-=++ .++..|+.||++|+-.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYErk-eG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYERR-EGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHHH-TSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHHh-ccCccccccCCccccc
Confidence 558999997762 223344555565322 2377889765443 4789999999999743
No 75
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=70.86 E-value=0.7 Score=35.25 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=35.1
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQE 71 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~ 71 (272)
.++...|.||...+.++.+.|+ -|. +=-..+|..|+.--..-++.+.|+.|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-ECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-ECC--CCCchhhcccCCCCccCCCceECccccCc
Confidence 3567899999877533223343 232 22357899998654445688999999743
No 76
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.27 E-value=0.85 Score=34.67 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=37.2
Q ss_pred CCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHH------hhCCcccccccccccc
Q 024114 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCY------EKGNTTCEICLQEYGP 74 (272)
Q Consensus 18 ~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~------~kg~~~CEICk~~Y~~ 74 (272)
...|.+|...+.+..+.|+.==.| -+.+|..|+.--+. -++.+.|..|....+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C---~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQEC---HNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSS---CCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCC---CCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 468999988765433445442233 36889999986654 3578999999876653
No 77
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.32 E-value=1.1 Score=31.61 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=34.4
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHH-----hhCCcccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCY-----EKGNTTCEICLQ 70 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~-----~kg~~~CEICk~ 70 (272)
+++...|.+|.....+..+.|+. | .+=-+.+|..|+.--+. .++.+.|..|..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~-C--d~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI-C--DKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE-C--SSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE-C--CCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 56778999998764332233432 2 23336899999875432 457899999873
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=49.50 E-value=7.3 Score=30.98 Aligned_cols=49 Identities=18% Similarity=0.431 Sum_probs=34.6
Q ss_pred CceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhhCCccccccccccccCccC
Q 024114 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTA 78 (272)
Q Consensus 19 ~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~yt~ 78 (272)
--|+.|+.... .|+. |. -+|.=..||..-+..++ .|+||+++.+...+.
T Consensus 29 ~nCKsCWf~~k----~LV~---C~--dHYLCl~CLtlmL~~Sd--rCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 29 QFCKSCWFENK----GLVE---CN--NHYLCLNCLTLLLSVSN--RCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCSSCSCCS----SEEE---CS--SCEEEHHHHHHTCSSSS--EETTTTEECCCCSCT
T ss_pred ccChhhccccC----Ceee---ec--chhhHHHHHHHHHhhcc--CCcccCCcCCcceec
Confidence 56888877653 2553 33 37999999988776654 999999998655433
No 79
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=45.71 E-value=3.5 Score=30.20 Aligned_cols=54 Identities=26% Similarity=0.674 Sum_probs=34.5
Q ss_pred cCCCCCCCCCceeEeccCcccCCCcccc--ccccCCCcceecHHHHHHHHHh--hCCccccccccc
Q 024114 10 DFKSNPETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (272)
Q Consensus 10 d~~s~se~~~~CRIC~eeeees~~~Li~--PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~~ 71 (272)
+....+++...| ||..... +.|+. =|.|. ..+.|..|+. +.. ++.+.|+.|...
T Consensus 8 ~~~~d~~~~~~C-~C~~~~~---g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 8 DMPVDPNEPTYC-LCHQVSY---GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCCCTTSCCCS-TTCCCSC---SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred ccccCCCCCCEE-ECCCCCC---CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCcc
Confidence 344445567788 8977543 33653 22254 2699999998 433 378999999743
No 80
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=44.99 E-value=13 Score=30.89 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=34.0
Q ss_pred CCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHH---------hhCCccccccc
Q 024114 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCY---------EKGNTTCEICL 69 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~---------~kg~~~CEICk 69 (272)
..+....|++|.++.+ |+ -| .+=-+-.|..||..=+. ..+.+.|..|.
T Consensus 59 ~Dg~~d~C~vC~~GG~-----Ll-cC--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGN-----LI-CC--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TTSCBCSCSSSCCCSS-----EE-EC--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCCeecccCCCCc-----EE-eC--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 3457789999987653 33 22 22236899999997663 46899999996
No 81
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=44.36 E-value=4.7 Score=33.40 Aligned_cols=25 Identities=8% Similarity=-0.072 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 024114 133 TAACCRSLALTFTVLLLVKHLFAVL 157 (272)
Q Consensus 133 ~a~~CRsvAii~m~lLLLrhal~ii 157 (272)
.|..+-+-|+=+.+.-|+..+....
T Consensus 41 eA~vliakA~ElFI~~Lt~~A~~~a 65 (140)
T 2byk_A 41 EVLFLMTKCTELFVRHLAGAAYTEE 65 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444445556665554
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=44.07 E-value=3.4 Score=31.89 Aligned_cols=50 Identities=14% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCcccccc
Q 024114 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEIC 68 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEIC 68 (272)
..++...|.||....+. +.|+ -| .+=-+..|..||.-+... ++.+.|+-|
T Consensus 3 ~~~~~~~C~~C~~~g~~--~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDL--LDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCCCSCBTTTCCCCCT--TTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCCCcCCCCCCCC--cCCe-EC--CCCCCCcChHHhCCccccccccCccCCcC
Confidence 44588999999877642 2243 33 232378999999876543 344444443
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.99 E-value=20 Score=26.07 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=35.3
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh---CCcccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK---GNTTCEICLQEYGP 74 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k---g~~~CEICk~~Y~~ 74 (272)
.....| ||....++ ...||.==.|. .|.|..|+.-=-... ....|+.|.....+
T Consensus 10 ~~~~~C-~C~~~~d~-~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNV-NHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCS-SSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCC-CCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 355667 88776532 34576533454 799999986433322 57899999976643
No 84
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=42.67 E-value=5.1 Score=33.63 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=0.4
Q ss_pred CCCchhhhcccCCCCchhhhc
Q 024114 245 SNSDEEEEEEEDDDDDDEEEQ 265 (272)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~ 265 (272)
+..+++||++++|||+|+|-.
T Consensus 105 ~~~~~~~~~d~~~~d~d~e~~ 125 (140)
T 3iab_B 105 TEGQADIDMESDVEDDDKETQ 125 (140)
T ss_dssp --------------------C
T ss_pred ecCCcccccccccccccccch
Confidence 333333344444444444433
No 85
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.21 E-value=4.5 Score=31.28 Aligned_cols=51 Identities=25% Similarity=0.676 Sum_probs=32.8
Q ss_pred CCCCCCCceeEeccCcccCCCcccc--ccccCCCcceecHHHHHHHHHh--hCCccccccccc
Q 024114 13 SNPETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (272)
Q Consensus 13 s~se~~~~CRIC~eeeees~~~Li~--PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~~ 71 (272)
..+++...| ||..... +.|+. =|.|+ ..|.|..|+. +.. ++++.|+.|...
T Consensus 31 ~d~~e~~yC-iC~~~~~---g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVSY---GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCSCCCBCS-TTCCBCC---SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred cCCCCCcEE-ECCCCCC---CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCc
Confidence 344466778 8876543 23553 23354 2699999998 333 478999999753
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=42.01 E-value=7.2 Score=27.42 Aligned_cols=47 Identities=17% Similarity=0.484 Sum_probs=32.1
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCcccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~ 70 (272)
.....|.+|.... .|+. |.+=-+..|..||.--+.+ ++.+.|+.|..
T Consensus 9 ~~~~~C~vC~~~g-----~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGG-----EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCS-----SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCC-----cEEE---CCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4567899998642 1332 3343469999999865433 47899999974
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=41.82 E-value=3.2 Score=29.96 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHhh--CCccccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCEICLQEYG 73 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~k--g~~~CEICk~~Y~ 73 (272)
+...|.||...... ..|+. |.+=-.+.|..|+.--.... +.+.|+.|.....
T Consensus 17 ~~~~C~~C~~~~~~--~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDG--SPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSS--CCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCC--CCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45668888766532 23543 22333799999987544332 6799999986543
No 88
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=41.11 E-value=5.2 Score=33.79 Aligned_cols=18 Identities=33% Similarity=0.765 Sum_probs=3.4
Q ss_pred hcccCCCCchhhhccCCC
Q 024114 252 EEEEDDDDDDEEEQLDPR 269 (272)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ 269 (272)
++++++++++|||..||.
T Consensus 60 eeeeeeeeeeEEE~vDPk 77 (146)
T 3cx5_F 60 DDDDDEDEEEEEEVTDQL 77 (146)
T ss_dssp -------------CCCHH
T ss_pred cccccccccccccccChH
Confidence 334444455566677774
No 89
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=38.28 E-value=16 Score=29.84 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHH------H---hhCCccccccc
Q 024114 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWC------Y---EKGNTTCEICL 69 (272)
Q Consensus 13 s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl------~---~kg~~~CEICk 69 (272)
+..+.+..|++|.++.+ |+ - |.+--+-.|.+||.+=+ . .++.+.|..|.
T Consensus 52 d~Dg~~~~C~vC~dGG~-----Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEGGN-----LI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp CTTSCBSSCTTTCCCSE-----EE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCCCcCeecCCCCe-----eE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 44567788999987642 33 2 23444789999999752 2 36789999995
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=36.66 E-value=3.9 Score=34.93 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=34.7
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCccccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEYG 73 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~~Y~ 73 (272)
++...|.+|..++. |+ - |.|--+..|..|+.-.+.. +|.+.|+.|...-+
T Consensus 5 ~~~~~C~~C~~~g~-----ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNGGD-----LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCCEE-----EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCc-----eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 35677999986542 33 2 3444478999998766543 57899999986543
No 91
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=35.93 E-value=8.5 Score=25.69 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=28.5
Q ss_pred ceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCcccccccc
Q 024114 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (272)
Q Consensus 20 ~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~ 70 (272)
.|.+|...++++ .|+ -| .+=-+..|..|+.-=+.+ ++.+.|+.|..
T Consensus 2 ~C~vC~~~~~~~--~ll-~C--d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD--KLI-LC--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS--CCE-EC--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC--CEE-EC--CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898765432 233 22 233478999998543332 46788988863
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=35.68 E-value=6.3 Score=32.35 Aligned_cols=53 Identities=23% Similarity=0.390 Sum_probs=34.1
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh---hCCcccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEY 72 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~---kg~~~CEICk~~Y 72 (272)
.+....| +|....++ .+.|+.=-.|. .|.|..|+.---.. .+.+.|+.|...-
T Consensus 5 ~~~~~~C-~C~~~~~~-~~~mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDE-SKFYIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCT-TSCEEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCC-CCCEeECCCCC---chhChhhcCCchhhccCccCeecCCCcchh
Confidence 3466788 99776432 24466533454 89999999643322 4689999998653
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=35.35 E-value=18 Score=27.99 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCceeEeccCccc----CCCccccccccCCCcceecHHHHHH
Q 024114 17 TTSHCRICHEEEFE----SCNSLEAPCACSGTVKFAHRDCIQR 55 (272)
Q Consensus 17 ~~~~CRIC~eeeee----s~~~Li~PC~C~GSlkyVH~~CL~r 55 (272)
....|.+|+..+.. ..+.|+. | .+=-+..|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~-C--~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS-C--ADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE-C--TTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceE-h--hhcCCCCCCchhcC
Confidence 56789999876421 1224553 3 33336899999963
No 94
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=34.23 E-value=8.5 Score=35.74 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=12.7
Q ss_pred HHHHHHhhhhHHHHHHH
Q 024114 205 VLLLRACGIILPMYVLM 221 (272)
Q Consensus 205 ~~~lra~gillP~Yi~~ 221 (272)
-|.-|.|..=+.-|-.-
T Consensus 254 ~F~~~vA~~s~eey~~F 270 (335)
T 4fp9_B 254 EFLARTACTSVEEFQVF 270 (335)
T ss_dssp HHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHH
Confidence 45678888888888654
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=33.13 E-value=17 Score=26.10 Aligned_cols=52 Identities=25% Similarity=0.539 Sum_probs=27.8
Q ss_pred CCCCCCCceeEeccCcccCCCcccccc--ccCCCcceecHHHHHHHHH--------hhCCccccccc
Q 024114 13 SNPETTSHCRICHEEEFESCNSLEAPC--ACSGTVKFAHRDCIQRWCY--------EKGNTTCEICL 69 (272)
Q Consensus 13 s~se~~~~CRIC~eeeees~~~Li~PC--~C~GSlkyVH~~CL~rWl~--------~kg~~~CEICk 69 (272)
++++....|-+|.....+. ..|+ -| .|. +|.|..|+.-=-. .++.+.|+-|.
T Consensus 3 ~~~~~~~~C~~C~~p~~~~-~~mI-~CD~~C~---~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 3 SSSDPVYPCGICTNEVNDD-QDAI-LCEASCQ---KWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ------CBCTTTCSBCCTT-SCEE-EBTTTTC---CEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCCCcCcCccCCCccCCC-CCeE-ecccCcc---ccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3456778899998875432 2343 34 354 7999999732111 12356777775
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.76 E-value=3.2 Score=28.63 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=29.9
Q ss_pred CCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCcccccccc
Q 024114 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~ 70 (272)
.+++...|.+|.... .|+ -| .+=-+..|..||.--+.. ++.+.|+.|..
T Consensus 5 ~~~~~~~C~vC~~~g-----~ll-~C--d~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKSG-----QLL-MC--DTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCSS-----CCE-EC--SSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCCC-----eEE-Ec--CCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345678899998653 132 22 233478899997643332 35677777753
No 97
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.49 E-value=2.8 Score=29.58 Aligned_cols=49 Identities=24% Similarity=0.686 Sum_probs=29.8
Q ss_pred CCCCCCceeEeccCcccCCCcccc--ccccCCCcceecHHHHHHHHHh--hCCcccccccc
Q 024114 14 NPETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~--PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~ 70 (272)
.+++...| ||..... +.|+. -|.|+ ..+.|..|+. +.. ++++.|+.|..
T Consensus 6 d~~e~~~C-~C~~~~~---g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSY---GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEECC---SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCCEE-ECCCcCC---CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 34466777 8876542 33553 22343 2699999998 443 37889998864
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=30.16 E-value=4.9 Score=28.65 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=32.5
Q ss_pred CCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCcccccccc
Q 024114 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~ 70 (272)
+..+...|.+|.... .|+ - |.+=-+..|..||.--+.. ++.+.|+.|..
T Consensus 4 ~~~~~~~C~vC~~~g-----~ll-~--CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 4 AQKNEDECAVCRDGG-----ELI-C--CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCSCCCSBSSSSCCS-----SCE-E--CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCccCCCCC-----CEE-E--cCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 445778999998653 132 2 2333468999998754433 47899999974
No 99
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=29.75 E-value=6.2 Score=32.92 Aligned_cols=49 Identities=20% Similarity=0.391 Sum_probs=33.4
Q ss_pred CCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCcccccccccc
Q 024114 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEY 72 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~~Y 72 (272)
.+...|.+|..+++ | .- |.+--+..|..|+.-.+.. +|.+.|+.|...=
T Consensus 2 ~~~~~C~~C~~~g~-----l-l~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGGE-----L-LC--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCSS-----C-EE--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCCCe-----e-ee--cCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35678999986532 2 23 3334478999998665543 5789999998543
No 100
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=27.57 E-value=15 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=29.8
Q ss_pred CCCCCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCcccccc
Q 024114 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEIC 68 (272)
Q Consensus 12 ~s~se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEIC 68 (272)
+.+..+...|.+|.+.. . ..-|..++--+..|..||. +.. +|++.|+-|
T Consensus 9 ~~~~~~~~~C~~C~~~G-----~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGG-----E-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp -CCCSSCSSCTTTCCCS-----E-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGG
T ss_pred CCcCCCCCCCCcCCCCC-----c-EeEECCCCCCcccccccCc--CCcCCCCCEECCCC
Confidence 34455778899998432 2 3456522333699999997 443 356666643
No 101
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=26.78 E-value=78 Score=25.05 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=25.0
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 024114 186 QVSVSFGFYVVLTLELFLQVLLLRACGIILPMYVLMRTITAIHN 229 (272)
Q Consensus 186 ~~s~~~~~~~~~~~~~~~~~~~lra~gillP~Yi~~r~~~~~q~ 229 (272)
-+++.|||.+..|..-=+...+.=..|+++--|++....+.++.
T Consensus 55 ~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 55 ATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888776554333333344456666666666655554543
No 102
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.47 E-value=19 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=27.7
Q ss_pred ccccccccCCCcceecHHHHHHHHHhhCCccccccccccccCccCCCCC
Q 024114 34 SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSKK 82 (272)
Q Consensus 34 ~Li~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEICk~~Y~~~yt~p~~~ 82 (272)
.|.-| .|+|.+.|.- .++...|+-|+..|++.=.-|.-+
T Consensus 10 iL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dGIPvmL 48 (67)
T 2jny_A 10 VLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLL 48 (67)
T ss_dssp CCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCC
T ss_pred HhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCCCCEeeeC
Confidence 46677 7888888752 357789999999998654444433
No 103
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=25.20 E-value=54 Score=24.56 Aligned_cols=46 Identities=17% Similarity=0.006 Sum_probs=24.7
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 024114 187 VSVSFGFYVVLTLELFLQVLLLRACGIILPMYVLMRTITAIHNSIR 232 (272)
Q Consensus 187 ~s~~~~~~~~~~~~~~~~~~~lra~gillP~Yi~~r~~~~~q~~r~ 232 (272)
+++-+|+.+..|..--+...+.=..|+++-.|++....+.+.++++
T Consensus 53 tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 53 TTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp GCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred hcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455565554443212223344456777666777666666665553
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.14 E-value=5.7 Score=30.28 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=31.8
Q ss_pred CCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh--hCCccccccccc
Q 024114 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (272)
Q Consensus 17 ~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~~ 71 (272)
+...|.||.....+. ...-|. +=-+..|..||.-=+.. ++.+.|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~---~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD---KLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGG---GCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCC---CEEEcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 446799998776432 223332 22368999998633322 478999999754
No 105
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=23.29 E-value=1.3e+02 Score=27.43 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=33.3
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Q 024114 185 SQVSVSFGFYVVLTLELFLQVLLLRACGIILPMYVLMRTITAIHNSIRR 233 (272)
Q Consensus 185 ~~~s~~~~~~~~~~~~~~~~~~~lra~gillP~Yi~~r~~~~~q~~r~r 233 (272)
..+++.+|+.+..|...-+...+.=.+|+++-.+++...++.+.+.++|
T Consensus 89 T~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 89 TLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp HHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred EeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777877766655444455566678888788887777777776544
No 106
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.11 E-value=14 Score=25.74 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=34.5
Q ss_pred CCCCCceeEeccCcccCCCccccccccCCCcceecHHHHHHHHHh---hCCccccccccc
Q 024114 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQE 71 (272)
Q Consensus 15 se~~~~CRIC~eeeees~~~Li~PC~C~GSlkyVH~~CL~rWl~~---kg~~~CEICk~~ 71 (272)
+++...|.||.....+ ...||.==.| -.|.|..|+.--... .....|+.|...
T Consensus 3 ~~e~~~C~~C~~~~~~-~~~mI~Cd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAA-DEFWICCDLC---EMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCS-SSCEEECSSS---CCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCC-CCCEEEccCC---CCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567889999876533 2446652234 379999998654322 256889999743
No 107
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=22.02 E-value=1.2e+02 Score=24.61 Aligned_cols=46 Identities=17% Similarity=0.067 Sum_probs=30.1
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 024114 187 VSVSFGFYVVLTLELFLQVLLLRACGIILPMYVLMRTITAIHNSIR 232 (272)
Q Consensus 187 ~s~~~~~~~~~~~~~~~~~~~lra~gillP~Yi~~r~~~~~q~~r~ 232 (272)
+++-||+.+..|..--+...+.=.+|+++-.+++....+.+.++.+
T Consensus 97 tTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 97 TTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766665444445556667887777777777777776653
No 108
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=21.05 E-value=5.4 Score=28.42 Aligned_cols=49 Identities=20% Similarity=0.620 Sum_probs=29.5
Q ss_pred CCCCCCceeEeccCcccCCCcccc--ccccCCCcceecHHHHHHHHHh--hCCcccccccc
Q 024114 14 NPETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (272)
Q Consensus 14 ~se~~~~CRIC~eeeees~~~Li~--PC~C~GSlkyVH~~CL~rWl~~--kg~~~CEICk~ 70 (272)
.+++...| ||..... +.|+. -|.|+ ..+.|..|+. +.. ++.+.|+.|..
T Consensus 7 d~~e~~yC-~C~~~~~---g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY---GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC---SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC---CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 33456677 8866432 34653 23354 2799999987 332 46788988864
No 109
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=20.62 E-value=9 Score=29.51 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=31.1
Q ss_pred CCCCceeEeccCcccCCCccc--cccccCCCcceecHHHHHHHHHhhCCccccc-ccc
Q 024114 16 ETTSHCRICHEEEFESCNSLE--APCACSGTVKFAHRDCIQRWCYEKGNTTCEI-CLQ 70 (272)
Q Consensus 16 e~~~~CRIC~eeeees~~~Li--~PC~C~GSlkyVH~~CL~rWl~~kg~~~CEI-Ck~ 70 (272)
.+...| ||..... +.|+ -=|.|. ..|.|..|+.-=-..++.+.|+. |..
T Consensus 24 ~~~~yC-iC~~~~~---g~MI~CD~c~C~--~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY---GPMVACDNPACP--FEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS---SSEECCCSSSCS--CSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC---CCEEEecCCCCc--cccCcCccCCCCcCCCCCccCChhhcc
Confidence 456778 8976543 2355 334454 26999999862112246899999 874
Done!