BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024115
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W4L|A Chain A, Human Dcmp Deaminase
pdb|2W4L|B Chain B, Human Dcmp Deaminase
pdb|2W4L|C Chain C, Human Dcmp Deaminase
pdb|2W4L|D Chain D, Human Dcmp Deaminase
pdb|2W4L|E Chain E, Human Dcmp Deaminase
pdb|2W4L|F Chain F, Human Dcmp Deaminase
Length = 178
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 10/39 (25%)
Query: 206 NACYDHIVGWRTSSIRRNSELPKWEDSLDEKYPHIVHHE 244
N C D ++ WR ++ E+ LD KYP++ H E
Sbjct: 55 NGCSDDVLPWRRTA----------ENKLDTKYPYVCHAE 83
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 43 LDGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARY 84
LD +V GE+L Q+V E++ K++ + HS GG RY
Sbjct: 50 LDTSEVRGEQLLQQVEEIVALSGQ-PKVNLIGHSHGGPTIRY 90
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 78 GGLVARYAIGKLYRPPKIENGEESSADTSSENSRGTMAGLEAINFITVATPHLGSRGNKQ 137
GGL A + RP +E E AD E+ RG A LE I TP +GN
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA-LELAREILKTTP----KGN-- 162
Query: 138 VPFLFG-VTAFEKAANFVIHLIF 159
P FG EK N + +F
Sbjct: 163 -PMQFGRRIGLEKVINVLEGQVF 184
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 42 TLDGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARYA 85
TLDG AQ+VL+V E +L++ FV HSVG L+ A
Sbjct: 72 TLDG-------YAQDVLDVCE-ALDLKETVFVGHSVGALIGMLA 107
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 78 GGLVARYAIGKLYRPPKIENGEESSADTSSENSRGTMAGLEAINFITVATPHLGSRGNKQ 137
GGL A + RP +E E AD E+ RG A LE I TP +GN
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA-LELAREILKTTP----KGN-- 161
Query: 138 VPFLFG-VTAFEKAANFVIHLIF 159
P FG EK N + +F
Sbjct: 162 -PMQFGRRIGLEKVINVLEGQVF 183
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 44 DGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARY 84
DG + GE+L V +V+ K++ + HS GGL +RY
Sbjct: 56 DGPNGRGEQLLAYVKQVLA-ATGATKVNLIGHSQGGLTSRY 95
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From
Chromobacterium Viscosum Atcc 6918
Length = 319
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 44 DGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARY 84
DG + GE+L V +V+ K++ + HS GGL +RY
Sbjct: 56 DGPNGRGEQLLAYVKQVLA-ATGATKVNLIGHSQGGLTSRY 95
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 44 DGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARY 84
DG + GE+L V +V+ K++ + HS GGL +RY
Sbjct: 55 DGPNGRGEQLLAYVKQVLA-ATGATKVNLIGHSQGGLTSRY 94
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With
Hexylphosphonic Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With
Hexylphosphonic Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 44 DGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARY 84
DG + GE+L V V+ K++ V HS GGL +RY
Sbjct: 56 DGPNGRGEQLLAYVKTVLA-ATGATKVNLVGHSQGGLTSRY 95
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition
State Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 44 DGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGGLVARY 84
DG + GE+L V V+ K++ V HS GGL +RY
Sbjct: 56 DGPNGRGEQLLAYVKTVLA-ATGATKVNLVGHSQGGLTSRY 95
>pdb|3I8A|X Chain X, Staphylococcus Aureus H30n, F98y Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-(3-(2,5-
Dimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120b)
Length = 157
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 20 CLSFHNICWIHFVGSERNMSKLTLDGVDVMGERLAQEVLEVIERKRNLRKISFVAHSVGG 79
+ F N H +N+ KL+ VMG + + + + + +RN+ S + +V G
Sbjct: 13 VIGFENQLPWHLPNDLKNVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEG 72
Query: 80 LVARYAIGKLYRPP 93
+ ++I +Y+ P
Sbjct: 73 VDVIHSIEDIYQLP 86
>pdb|3T2G|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Y229f Variant With Dhap
Length = 407
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 49 MGERLAQEVLEVIERKRNLRKISFVAHSVGGLV---ARYAIGKLYR 91
M E EVL+V+E K L K A+S+ GL+ RY I K++R
Sbjct: 162 MHEGFIFEVLDVVEHKVYLLKTPEDAYSLLGLIGTTGRYIIRKVFR 207
>pdb|3T2B|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Ligand Free
pdb|3T2C|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Dhap-Bound Form
pdb|3T2D|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Fbp-Bound Form
pdb|3T2E|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, F6p-Bound Form
pdb|3T2F|A Chain A, Fructose-1,6-Bisphosphate AldolasePHOSPHATASE FROM
THERMOPROTEUS Neutrophilus, Soaked With Edta And Dhap
Length = 407
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 49 MGERLAQEVLEVIERKRNLRKISFVAHSVGGLV---ARYAIGKLYR 91
M E EVL+V+E K L K A+S+ GL+ RY I K++R
Sbjct: 162 MHEGFIFEVLDVVEHKVYLLKTPEDAYSLLGLIGTTGRYIIRKVFR 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,036,287
Number of Sequences: 62578
Number of extensions: 317754
Number of successful extensions: 703
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 21
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)