RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024116
(272 letters)
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 492 bits (1269), Expect = e-178
Identities = 209/269 (77%), Positives = 240/269 (89%), Gaps = 3/269 (1%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
MKK++GKVPGLAV+LVG++RDSQTYVRNKIKACEE GIKS++ E + CTE ++L+AL
Sbjct: 79 MKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRK 138
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
+N+D+SI+GILVQLPLPQHLDE KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTP
Sbjct: 139 FNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTP 198
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
KGC+ELLIRSGVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PEQIT +A
Sbjct: 199 KGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKA 258
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DIVIAAAG+ NLVRGSWLKPGAVV+DVGT PV+ D SCE+GYRL+GDVCYEEA+ +AS
Sbjct: 259 DIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFGYRLVGDVCYEEALGVAS 315
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
ITPVPGGVGPMT+ MLL NTLD+AKR +
Sbjct: 316 AITPVPGGVGPMTITMLLCNTLDAAKRIF 344
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 408 bits (1050), Expect = e-144
Identities = 192/271 (70%), Positives = 221/271 (81%), Gaps = 3/271 (1%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
MK+SIG VPGLAVILVG+R+DS TYVRNK KAC+ VGI S + TE EVL +S
Sbjct: 96 MKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISG 155
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
+N D S++GILVQLPLP H+DE IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTP
Sbjct: 156 FNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTP 215
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
KGCIELL R VEI GK AVVIGRSNIVG+P +LLLQR ATVSIVH+ TKNPE+IT EA
Sbjct: 216 KGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREA 275
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DI+I+A G N+VRGSW+KPGAVV+DVG PV+ D S GYRL+GDVCYEEA ++AS
Sbjct: 276 DIIISAVGQPNMVRGSWIKPGAVVIDVGINPVE---DASSPRGYRLVGDVCYEEACKVAS 332
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 271
+TPVPGGVGPMT+AMLLSNTL SAKR + F
Sbjct: 333 AVTPVPGGVGPMTIAMLLSNTLTSAKRIHNF 363
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 369 bits (949), Expect = e-129
Identities = 167/270 (61%), Positives = 209/270 (77%), Gaps = 3/270 (1%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+ + GKVPGLAV++VG R+DSQTYV K KAC EVGIKS + + +E E+++ +
Sbjct: 32 LSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHE 91
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N + ++GILVQLPLP+H++E KIL+ +SLEKDVDGFHPLNIG LAM+GREPLF+PCTP
Sbjct: 92 LNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTP 151
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
KGC+ELL RSG+ I GK AVV+GRSNIVGLP SLLL + ATV++VH+ T +PE I EA
Sbjct: 152 KGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREA 211
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DIVIAAAG A +++G W+KPGA V+DVGT V DPS + GYRL+GDV + E ++A
Sbjct: 212 DIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS---DPSKKSGYRLVGDVDFAEVSKVAG 268
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
ITPVPGGVGPMTVAMLL NT+D AKR +
Sbjct: 269 WITPVPGGVGPMTVAMLLKNTVDGAKRVFA 298
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 329 bits (845), Expect = e-114
Identities = 138/268 (51%), Positives = 179/268 (66%), Gaps = 11/268 (4%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K G PGLAVILVG+ SQ YVR+K KA EE+GI S + + + TE+E+L +
Sbjct: 23 LKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDE 82
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N D ++GILVQLPLP+HLDE K+L A+ EKDVDGFHP N+G LA EP F+PCTP
Sbjct: 83 LNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLA--QGEPGFLPCTP 140
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
G + LL G+++ GKN VV+GRSNIVG P +LLL +ATV++ H+ TK+ IT A
Sbjct: 141 AGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNA 200
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DIV+ A G + ++ +KPGAVV+DVG V+ +L+GDV ++ AS
Sbjct: 201 DIVVVAVGKPHFIKADMVKPGAVVIDVGINRVN---------DGKLVGDVDFDSVKEKAS 251
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRA 268
ITPVPGGVGPMTVAMLL NTL +A+R
Sbjct: 252 AITPVPGGVGPMTVAMLLENTLKAAERQ 279
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 313 bits (803), Expect = e-107
Identities = 134/268 (50%), Positives = 175/268 (65%), Gaps = 11/268 (4%)
Query: 3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
K G VPGLAVILVG+ S +YVR K KA E+VGI S + EF TE+E+L + N
Sbjct: 27 KEQGIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLN 86
Query: 63 QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
D INGILVQLPLP+H+DE +++ +S EKDVDGFHP+N+G + + + F+PCTP G
Sbjct: 87 ADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMML--GQDTFLPCTPHG 144
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
+ELL ++I GK+ VV+GRSNIVG P LL +ATV+ H+ TKN ++T +ADI
Sbjct: 145 ILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADI 204
Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
+I A G L+ +K GAVV+DVG + E G L GDV ++ AS I
Sbjct: 205 LIVAVGKPKLITADMVKEGAVVIDVGVNRL--------ENGK-LCGDVDFDNVKEKASYI 255
Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
TPVPGGVGPMT+ ML+ NT++ AKRA G
Sbjct: 256 TPVPGGVGPMTITMLMHNTVELAKRAGG 283
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 301 bits (772), Expect = e-103
Identities = 126/259 (48%), Positives = 162/259 (62%), Gaps = 11/259 (4%)
Query: 7 KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
+ PGLAV+LVG SQ YV +K KACEEVG S + + +E E+L + N D +
Sbjct: 32 RAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPT 91
Query: 67 INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
I+GILVQLPLP H+D K+L+ + +KDVDGFHP N+G LA R PL PCTP+G + L
Sbjct: 92 IDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQ--RIPLLRPCTPRGIMTL 149
Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
L R G++ G NAVV+G SNIVG P SL L TV++ H TKN AD+++ A
Sbjct: 150 LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVA 209
Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP 246
G + G W+KPGA+V+DVG ++ +L+GDV +E A AS ITPVP
Sbjct: 210 VGKPGFIPGEWIKPGAIVIDVGINRLEDG---------KLVGDVEFETAAERASWITPVP 260
Query: 247 GGVGPMTVAMLLSNTLDSA 265
GGVGPMTVA LL NTL +
Sbjct: 261 GGVGPMTVATLLENTLQAC 279
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 293 bits (753), Expect = e-100
Identities = 129/265 (48%), Positives = 174/265 (65%), Gaps = 11/265 (4%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G PGLAVILVG+ SQ YVRNK+KACE+ G S+ + +E E+L + N+D
Sbjct: 30 GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDP 89
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
I+GILVQLPLP+H+D K+++A++ EKDVDGFH N G L M G +PLF PCTP G ++
Sbjct: 90 KIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGAL-MTG-QPLFRPCTPYGVMK 147
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
+L G+ + G +AVVIGRSNIVG P ++LL + ATV+I H+ T++ T +ADIV+A
Sbjct: 148 MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVA 207
Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
A G N++ +KPGA V+DVG D +L GDV + +A ITPV
Sbjct: 208 AVGKRNVLTADMVKPGATVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPV 258
Query: 246 PGGVGPMTVAMLLSNTLDSAKRAYG 270
PGGVGPMT+ MLL NT+++A+RA
Sbjct: 259 PGGVGPMTITMLLVNTIEAAERAAA 283
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 291 bits (748), Expect = 3e-99
Identities = 131/273 (47%), Positives = 177/273 (64%), Gaps = 10/273 (3%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K + G PGLAV+LVGE SQ YVR+K K +E G+ S + ++ E+L ++
Sbjct: 25 LKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIAR 84
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N D +I+GILVQLPLP+HLD ++ A+ EKDVDG H +N G LA E +PCTP
Sbjct: 85 LNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLA--TGETALVPCTP 142
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
GC+ LL R ++ G NAVVIGRSN+VG P + LL +ATV+I H+ T++ + A
Sbjct: 143 LGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRA 202
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY---RLMGDVCYEEAMR 237
DI++AA G +V+G W+KPGA V+DVG ++ P+ E G RL+GDV + EA
Sbjct: 203 DILVAAVGRPEMVKGDWIKPGATVIDVG-----INRIPAPEKGEGKTRLVGDVAFAEAAE 257
Query: 238 LASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
+A ITPVPGGVGPMT+A LL+NTL +A RA G
Sbjct: 258 VAGAITPVPGGVGPMTIACLLANTLTAACRAAG 290
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 288 bits (739), Expect = 4e-98
Identities = 126/266 (47%), Positives = 167/266 (62%), Gaps = 11/266 (4%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+ GK P LAVILVG+ SQTYV KIKACE VG+ S + + TE E+L+ + +
Sbjct: 24 LTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKD 83
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N D +I+GILVQLPLP+H+D +L+A+ KDVDGFHPLNIG L + F+P TP
Sbjct: 84 LNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCS-QLDG-FVPATP 141
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
G + LL +EI GK+ V+IG SNIVG P ++L+ A+VS+ H LTK+ T A
Sbjct: 142 MGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNA 201
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DIV G +L++ S +K GAVV+D+G ++ RL+GDV +E AS
Sbjct: 202 DIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG---------RLVGDVDFENVAPKAS 252
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAK 266
ITPVPGGVGPMT+ LL NTL +A+
Sbjct: 253 FITPVPGGVGPMTIVSLLENTLIAAE 278
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 295
Score = 287 bits (737), Expect = 1e-97
Identities = 137/273 (50%), Positives = 177/273 (64%), Gaps = 7/273 (2%)
Query: 2 KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
+ GKVPGL VI+VGE SQ YVRNK K+C+E+G+ S V E TE+ +L + +
Sbjct: 25 RAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDL 84
Query: 62 NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
N D ++GILVQ PLP+ +DE + A+ KDVDGFHP N+G L M + F+ CTP
Sbjct: 85 NNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPY 144
Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQIT 177
G +ELL R +E GK+ VV+GRSNIVG P +L+LQ+ TV+I H+ TK+ T
Sbjct: 145 GILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYT 204
Query: 178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR 237
+ADI+IAA G A + +KPGAVV+DVG ++ DPS + GYRL+GDV YE
Sbjct: 205 RQADILIAAIGKARFITADMVKPGAVVIDVGINRIE---DPSTKSGYRLVGDVDYEGVSA 261
Query: 238 LASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
AS ITPVPGGVGPMT+AMLL NTL S +R
Sbjct: 262 KASAITPVPGGVGPMTIAMLLKNTLQSFERVNN 294
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 286 bits (734), Expect = 4e-97
Identities = 130/269 (48%), Positives = 173/269 (64%), Gaps = 7/269 (2%)
Query: 2 KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
G+ PGLAV+ VG+ S YVRNK KAC VGI S ++ EV ++
Sbjct: 26 LPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQL 85
Query: 62 NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
NQD ++GIL+QLPLP+HLDE +L A+ +KD DG HPLN+G L ++G EP CTP
Sbjct: 86 NQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRL-VKG-EPGLRSCTPA 143
Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
G + LL ++I GK AVV+GRS +VG P +L+L +ATV+I H+ T++ IT EAD
Sbjct: 144 GVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREAD 203
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
I++AAAG NL+ +KPGAVV+DVG + PS + RL GDV +EE +A+
Sbjct: 204 ILVAAAGRPNLIGAEMVKPGAVVVDVG-----IHRLPSSDGKTRLCGDVDFEEVEPVAAA 258
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
ITPVPGGVGPMTV MLL NT+ S ++ +G
Sbjct: 259 ITPVPGGVGPMTVTMLLVNTVLSWQKRHG 287
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 280 bits (719), Expect = 4e-95
Identities = 129/267 (48%), Positives = 180/267 (67%), Gaps = 11/267 (4%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K+ G VPGL VILVG+ SQ YVRNK ++ G KS V + +++E+L+ +
Sbjct: 25 LKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIER 84
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
YNQD + +GILVQLPLP+H++E KIL A+ +KDVDGFHP+N G+L GR P+ IPCTP
Sbjct: 85 YNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHL-WSGR-PVMIPCTP 142
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
G +E+ VE+ GK+AVVIGRSNIVG P + LL +ATV++ H+ T+N ++ +A
Sbjct: 143 AGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKA 202
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DI++ A G + V ++K GAVV+DVG ++ D E G +L+GDV ++E +AS
Sbjct: 203 DILVVAIGRGHFVTKEFVKEGAVVIDVG-----MNRD---ENG-KLIGDVDFDEVAEVAS 253
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKR 267
ITPVPGGVGPMT+ ML+ T +A R
Sbjct: 254 YITPVPGGVGPMTITMLMEQTYQAALR 280
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 293
Score = 267 bits (685), Expect = 8e-90
Identities = 125/268 (46%), Positives = 174/268 (64%), Gaps = 9/268 (3%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
GK P LA ILVG S+TYV NK+KACEE G KS + + TE+E+L + NQD
Sbjct: 29 GKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDD 88
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
++G +VQLPLP+H+ E K+++A+ KDVDGFHP+N+G +++ P F+ TP G +E
Sbjct: 89 DVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSI--GLPCFVSATPNGILE 146
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEAD 181
LL R +E GK VV+GRSNIVG P L++Q+ + TV++ H+ +KN ++ EAD
Sbjct: 147 LLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEAD 206
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
I+IAA G V+ +K GAVV+DVGT V D + + G++L GDV ++E S
Sbjct: 207 IIIAALGQPEFVKADMVKEGAVVIDVGTTRVP---DATRKSGFKLTGDVKFDEVAPKCSY 263
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
ITPVPGGVGPMT+ L+ NTL + K+A
Sbjct: 264 ITPVPGGVGPMTIVSLMKNTLLAGKKAI 291
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 267 bits (684), Expect = 1e-89
Identities = 135/275 (49%), Positives = 176/275 (64%), Gaps = 7/275 (2%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K+ GKVPGL ILVGE S +YV KIK +G I + TE+E+L +
Sbjct: 26 LKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDK 85
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
YN D SI+GILVQLPLP+H++E K+L+A+ +KDVDGFHP+N+G L + G E F+PCTP
Sbjct: 86 YNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTP 145
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQI 176
G E+L+RSGVE G VV+GRSNIVG P + ++ + +ATV+IVH +KN +
Sbjct: 146 AGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARH 205
Query: 177 TSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM 236
ADI+I AAGV NLV+ W+KPGA V+DVG V + L GDV ++
Sbjct: 206 CQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVGTNESTGKAI---LSGDVDFDAVK 262
Query: 237 RLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 271
+A ITPVPGGVGPMT+AML+ NTL SAK
Sbjct: 263 EIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL 297
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 264 bits (675), Expect = 2e-88
Identities = 134/265 (50%), Positives = 189/265 (71%), Gaps = 11/265 (4%)
Query: 5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQD 64
GK PGLAV+LVG+ + S+TYVRNK K EE G+KS++ E + TE+++L+ + N+D
Sbjct: 28 EGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNED 87
Query: 65 SSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCI 124
+I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++ F+PCTP G I
Sbjct: 88 KTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGII 145
Query: 125 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVI 184
EL+ +G +I GK AVVIGRSNIVG P + LL +ATV+I H+ TK+ Q+ EADI++
Sbjct: 146 ELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILV 205
Query: 185 AAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP 244
A G+A V+ ++KPGA+V+DVG + +L GDV +++ + A ITP
Sbjct: 206 VATGLAKFVKKDYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITP 256
Query: 245 VPGGVGPMTVAMLLSNTLDSAKRAY 269
VPGGVGPMT+ MLL+NTL +AKR +
Sbjct: 257 VPGGVGPMTITMLLANTLKAAKRIW 281
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 301
Score = 257 bits (658), Expect = 1e-85
Identities = 127/265 (47%), Positives = 177/265 (66%), Gaps = 10/265 (3%)
Query: 3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
K+ G P LAVILVG SQ YVRNKI EE GI+S+ ++ +L ++ N
Sbjct: 28 KAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELN 87
Query: 63 QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
D S+NGIL+QLPLP H+DE ++L A++ KDVDGFH N+G L+ +GR+ L PCTP G
Sbjct: 88 ADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLS-QGRDVL-TPCTPSG 145
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
C+ LL + ++ GK+AVVIGRSNIVG P + LL + H +V++VH+ + + + + +ADI
Sbjct: 146 CLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADI 205
Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMRLASV 241
V+AA G L+ WLKPGAVV+DVG +D + G RL+GDV ++ A+ + S
Sbjct: 206 VVAAVGRPRLIDADWLKPGAVVIDVGINRID-------DDGRSRLVGDVDFDSALPVVSA 258
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAK 266
ITPVPGGVGPMT+A L+ NT+ +A+
Sbjct: 259 ITPVPGGVGPMTIAFLMKNTVTAAR 283
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 255 bits (652), Expect = 6e-85
Identities = 128/266 (48%), Positives = 171/266 (64%), Gaps = 11/266 (4%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K VPGLAVILVG+ S TYV+ K KAC+ VGI SI E ++ E+L ++
Sbjct: 24 LKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAM 83
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N + +I+GILVQLPLP+H+D KIL+A+ +KDVDGFHP N+G L + G + F+PCTP
Sbjct: 84 MNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRL-VTGLDG-FVPCTP 141
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
G +ELL +++ GK+ V+G SNIVG P + LL +ATV I H TK+ + T +A
Sbjct: 142 LGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKA 201
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DIVI G NL+ +K GA+V+D+G + RL+GDV +E + S
Sbjct: 202 DIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG---------RLVGDVDFENVAKKCS 252
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAK 266
ITPVPGGVGPMT+AMLLSNTL +AK
Sbjct: 253 YITPVPGGVGPMTIAMLLSNTLKAAK 278
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 250 bits (641), Expect = 3e-83
Identities = 123/265 (46%), Positives = 159/265 (60%), Gaps = 16/265 (6%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G+ PGLAVILVGE SQ YVRNK +ACE+ GI S T++E+ + ++ N
Sbjct: 29 GRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARP 88
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
I+GIL+QLPLP+ LD + L+ + KDVDGFHP N+G LA+ P F PCTP G +
Sbjct: 89 DIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLAL--GLPGFRPCTPAGVMT 146
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEAD 181
LL R G+ GK AVV+GRSNIVG P +L+L +ATV++ H+ T + + EAD
Sbjct: 147 LLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREAD 206
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
+ A G V +KPGAVV+DVG D L+GD +E +AS
Sbjct: 207 FLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG----------LVGDCDFEGLSDVASA 256
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAK 266
ITPVPGGVGPMT+A LL NT+ S K
Sbjct: 257 ITPVPGGVGPMTIAQLLVNTVQSWK 281
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 250 bits (641), Expect = 4e-83
Identities = 121/273 (44%), Positives = 160/273 (58%), Gaps = 20/273 (7%)
Query: 3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
K G PGL +LVG+ SQ YVR K + C EVGI SI + T++E+ + N
Sbjct: 27 KEKGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELN 86
Query: 63 QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
D + G +VQLPLP+HLDE +L+ + KD DG HP N+G L + PL PCTP+G
Sbjct: 87 ADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPL--PCTPRG 144
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTKNPEQITSEA 180
+ LL R VE+ G + VVIGR VG P LLL R ATV++ H T++ T A
Sbjct: 145 IVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRA 204
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDV---CYEEAMR 237
DI++AAAGVA+LV +KPGA VLDVG V + D +L+GDV +E
Sbjct: 205 DIIVAAAGVAHLVTADMVKPGAAVLDVG---VSRAGD------GKLVGDVHPDVWE---- 251
Query: 238 LASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
+A ++P PGGVGPMT A LL+N ++ A+R G
Sbjct: 252 VAGAVSPNPGGVGPMTRAFLLTNVVERAERRAG 284
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 250 bits (640), Expect = 6e-83
Identities = 124/269 (46%), Positives = 166/269 (61%), Gaps = 10/269 (3%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G PGLA +L+ + S+TYV K + CEEVGI++I E +E+ + + N D
Sbjct: 29 GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADE 88
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
++GILVQ+P+P H+D+ ++L + KDVDGFHP N+G L + F PCTP G +
Sbjct: 89 DVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLV--AGDARFKPCTPHGIQK 146
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEAD 181
LL +GV+ G + VV+GRS+IVG P +LL+Q+ ATV++ H+ T + T AD
Sbjct: 147 LLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRAD 206
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
IV+AAAGV L+ GS L GA V+DVG VD E GY L+GDV +E A AS
Sbjct: 207 IVVAAAGVPELIDGSMLSEGATVIDVGIN----RVDADTEKGYELVGDVEFESAKEKASA 262
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
ITPVPGGVGPMT AMLL NT+ +A G
Sbjct: 263 ITPVPGGVGPMTRAMLLYNTVKAASLQEG 291
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 243 bits (624), Expect = 2e-82
Identities = 91/170 (53%), Positives = 119/170 (70%), Gaps = 11/170 (6%)
Query: 99 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 158
HP+N+G L + EP F+PCTP+G +ELL R G+++ GKN VVIGRSNIVG P +LLL
Sbjct: 1 HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58
Query: 159 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 218
+ATV++ H+ TK+ +IT EADIV+ A G L++ W+KPGAVV+DVG V+
Sbjct: 59 ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113
Query: 219 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 268
+L+GDV +E AS ITPVPGGVGPMTVAMLL NT+++AKR
Sbjct: 114 ----NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQ 159
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 243 bits (623), Expect = 4e-82
Identities = 98/175 (56%), Positives = 124/175 (70%), Gaps = 8/175 (4%)
Query: 92 EKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP 151
EKDVDG HP+N+G LA+ P FIPCTP G +ELL R G+++ GK VV+GRSNIVG P
Sbjct: 2 EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59
Query: 152 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCP 211
+ LL +ATV++ H+ TKN ++ T +ADIVI A G LV+G +KPGAVV+DVG
Sbjct: 60 LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119
Query: 212 VDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 266
V D S G +L+GDV +E A AS ITPVPGGVGPMTVAML+ NT+++AK
Sbjct: 120 VP---DKS---GGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 246 bits (630), Expect = 9e-82
Identities = 128/264 (48%), Positives = 177/264 (67%), Gaps = 10/264 (3%)
Query: 3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
KS G LAVILVG+ SQTYV++K KACEE GIKS+V + T++E+L ++ N
Sbjct: 25 KSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLN 84
Query: 63 QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
D S++GILVQLPLP H+ + IL+++ KDVDGFHP+N+G L + G E F+PCTP G
Sbjct: 85 HDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLG 143
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
++LL +++ GK+AV+IG SNIVG P + +L ATVS+ H TK+ T +AD+
Sbjct: 144 VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADL 203
Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
+I AAG NL+R +K G +V+DVG ++ +++GDV +EE + +S I
Sbjct: 204 IIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYI 254
Query: 243 TPVPGGVGPMTVAMLLSNTLDSAK 266
TPVPGGVGPMT+AMLL NT+ SAK
Sbjct: 255 TPVPGGVGPMTIAMLLENTVKSAK 278
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 247 bits (631), Expect = 1e-81
Identities = 117/269 (43%), Positives = 170/269 (63%), Gaps = 12/269 (4%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K + G PGLA ILVG+ S+ YVR K KACE VGI++ T++E+L + +
Sbjct: 31 LKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDS 90
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N+ ++GIL+QLPLP+HLD + ++A+ KD DGFHP N+G L M G E +PCTP
Sbjct: 91 LNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKL-MIGDEG-LVPCTP 148
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
G I L GV+I GKNAV++G SN+VG P + +L +ATVS+ H T + ++ T +A
Sbjct: 149 HGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDA 208
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DI++ A GV +L++ +K GAV+ DVG + V GDV +E ++ AS
Sbjct: 209 DILVVATGVKHLIKADMVKEGAVIFDVGITKEEDKV----------YGDVDFENVIKKAS 258
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
+ITPVPGGVGP+T+AML+ + L A+++
Sbjct: 259 LITPVPGGVGPLTIAMLMKHVLMCAEKSL 287
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 247 bits (631), Expect = 1e-81
Identities = 127/270 (47%), Positives = 179/270 (66%), Gaps = 11/270 (4%)
Query: 3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
K G P L+VILVG SQ+YVR+K KA E++G+ S + + TE+EVLN L+ N
Sbjct: 27 KEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLN 86
Query: 63 QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
D S++GILVQ+PLP+ + E KIL+A++ EKDVDGFHP+NIG L + E F+PCTP G
Sbjct: 87 NDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYI--DEQTFVPCTPLG 144
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
+E+L + +++ GKNAVVIGRS+IVG P S LL + +A+V+I+H+ +K+ +AD+
Sbjct: 145 IMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADV 204
Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
+++A G LV +K GAV++DVG P E G +L GDV Y+ +A I
Sbjct: 205 IVSAVGKPGLVTKDVVKEGAVIIDVGNTPD--------ENG-KLKGDVDYDAVKEIAGAI 255
Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
TPVPGGVGP+T+ M+L+NTL + K G
Sbjct: 256 TPVPGGVGPLTITMVLNNTLLAEKMRRGID 285
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 294
Score = 247 bits (631), Expect = 1e-81
Identities = 114/265 (43%), Positives = 165/265 (62%), Gaps = 6/265 (2%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K+ P L VILVG+ SQ YVRNK + E +G++S +E ++ ++
Sbjct: 25 LKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINE 84
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N D S++GILVQLP+P H+D+ I++ + EKDVDGFH N+G L ++ IPCTP
Sbjct: 85 LNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTP 144
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
KGC+ L+ + G +AVVIGRSNIVG P + LL + TV+ VH+ T++ S+A
Sbjct: 145 KGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKA 204
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DI++AA G+ N V+ SW+K GA+V+DVG ++ + +GDV + E + AS
Sbjct: 205 DILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEE------GGVKKFVGDVDFAEVKKKAS 258
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSA 265
ITPVPGGVGPMT+A L+ NT+ +A
Sbjct: 259 AITPVPGGVGPMTIAFLMVNTVIAA 283
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 279
Score = 237 bits (606), Expect = 4e-78
Identities = 122/261 (46%), Positives = 160/261 (61%), Gaps = 12/261 (4%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
G P LA ++VG+ SQ YVR K +ACE VGI S+ E T VL + N+D
Sbjct: 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDP 83
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
INGILVQLPLP+ +D +++ A+ EKDVDGFHPLN+G L + G P F PCTP G +
Sbjct: 84 DINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRL-VSGL-PGFAPCTPNGIMT 141
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
LL + I GK AVV+GRS VG P + LL ATV+I H+ T+N + +ADI+++
Sbjct: 142 LLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVS 201
Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
AAG A + +KPGA V+DVG V+ +L GDV ++ +A ITPV
Sbjct: 202 AAGKAGFITPDMVKPGATVIDVGINQVN----------GKLCGDVDFDAVKEIAGAITPV 251
Query: 246 PGGVGPMTVAMLLSNTLDSAK 266
PGGVGPMT+A L+ NT D+AK
Sbjct: 252 PGGVGPMTIATLMENTFDAAK 272
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 230 bits (588), Expect = 2e-75
Identities = 125/265 (47%), Positives = 168/265 (63%), Gaps = 10/265 (3%)
Query: 3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
+ G GL V+ VG+ S YVR K K CEEVGI S+ T+ E+L ++ N
Sbjct: 25 AARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLN 84
Query: 63 QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
D +++GILVQLPLP+H+DE +LDA+S KD DGFHP N+G L++ G + PCTP G
Sbjct: 85 ADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSI-GIAGVPRPCTPAG 143
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
+ +L + V+ GK A+V+GRSNIVG P +++L HATV+I H+ T + ADI
Sbjct: 144 VMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADI 203
Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
++AA G A LV+G+W+K GAVV+DVG + +L+GDV + A AS I
Sbjct: 204 LVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG---------KLVGDVEFAAAAARASAI 254
Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKR 267
TPVPGGVGPMT AMLL NT++ AKR
Sbjct: 255 TPVPGGVGPMTRAMLLVNTVELAKR 279
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 278
Score = 228 bits (584), Expect = 1e-74
Identities = 98/265 (36%), Positives = 158/265 (59%), Gaps = 12/265 (4%)
Query: 2 KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
K++ +P +A ILVG S Y+ N+ K +GI + + +E++++N +
Sbjct: 26 KENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEEL 85
Query: 62 NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
N+D++++GI++QLPLP+HLDE KI + + KD+D +++G E F+PCTP
Sbjct: 86 NKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPN 143
Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
I L+ ++I GK VVIGRSNIVG P + LL +ATV+I H+ TKN +++ +AD
Sbjct: 144 SVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKAD 203
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
I++ A G + ++K GA+V+DVGT V+ ++ GDV +++ + AS
Sbjct: 204 ILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVN----------GKITGDVNFDKVIDKASY 253
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAK 266
ITPVPGGVG +T +L+ N ++ K
Sbjct: 254 ITPVPGGVGSLTTTLLIKNVCEALK 278
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 228 bits (583), Expect = 2e-74
Identities = 117/263 (44%), Positives = 165/263 (62%), Gaps = 8/263 (3%)
Query: 8 VPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSI 67
VP L V+ +GE S +YVR K + + +G++S V + +++E+L ++ N D +
Sbjct: 29 VPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEV 88
Query: 68 NGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELL 127
+GILVQLPLP H+D ++L+A+ KDVDGFHPLN+G L M G E L PCTP G + LL
Sbjct: 89 DGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWM-GGEALE-PCTPAGVVRLL 146
Query: 128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAA 187
G+ + GK VV+GRSNIVG P + LL R ATV++ H+ T++ +T AD+++ A
Sbjct: 147 KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAV 206
Query: 188 GVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG 247
G +L+ ++PGAVV+DVG V L GDV E A +A +TPVPG
Sbjct: 207 GRPHLITPEMVRPGAVVVDVGINRV-----GGNGGRDILTGDVHPEVA-EVAGALTPVPG 260
Query: 248 GVGPMTVAMLLSNTLDSAKRAYG 270
GVGPMTVAML++NT+ +A R G
Sbjct: 261 GVGPMTVAMLMANTVIAALRRRG 283
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 225 bits (574), Expect = 4e-73
Identities = 117/263 (44%), Positives = 164/263 (62%), Gaps = 9/263 (3%)
Query: 9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
PGLAV+L+G S+ YV K+K ++G+ S T ++L + N D +I+
Sbjct: 27 PGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIH 86
Query: 69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
GILVQLPLP+HLD IL A+S +KDVDG HP+N+G L + G FIPCTP G IELL
Sbjct: 87 GILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLL-GETDGFIPCTPAGIIELLK 145
Query: 129 RSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRH---HATVSIVHALTKNPEQITSEADIVI 184
+ + G++ ++GRSNIVG P +LL+Q+H +ATV+++H+ ++N +I ADI+I
Sbjct: 146 YYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIII 205
Query: 185 AAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP 244
AA GV ++ + AV++DVGT V + GY L+GDV + + ITP
Sbjct: 206 AAIGVPLFIKEEMIAEKAVIVDVGTSRVPAANPK----GYILVGDVDFNNVVPKCRAITP 261
Query: 245 VPGGVGPMTVAMLLSNTLDSAKR 267
VPGGVGPMTVAML+ NT +S R
Sbjct: 262 VPGGVGPMTVAMLMRNTWESYLR 284
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 219 bits (558), Expect = 1e-70
Identities = 112/262 (42%), Positives = 163/262 (62%), Gaps = 11/262 (4%)
Query: 6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
P LAV+LVG S+ YVRNK + E++G++S++ + T+ ++L ++ N D
Sbjct: 28 DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDP 87
Query: 66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
++ ILVQLPLP LDE ++DA+ +KDVDGF P+++G L EP + TP G +
Sbjct: 88 DVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWA--NEPTVVASTPYGIMA 145
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
LL +++ GK V++GRSNIVG P + L+ H ATV+I H+ T+N +Q+T EADI++
Sbjct: 146 LLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVV 205
Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
A GV + + +KPGAVV+DVG + D L+GDV +AS ITPV
Sbjct: 206 AVGVPHFIGADAVKPGAVVIDVG---ISRGADGK------LLGDVDEAAVAPIASAITPV 256
Query: 246 PGGVGPMTVAMLLSNTLDSAKR 267
PGGVGPMT+A L++ T+ AKR
Sbjct: 257 PGGVGPMTIASLMAQTVTLAKR 278
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 218 bits (557), Expect = 1e-70
Identities = 111/269 (41%), Positives = 164/269 (60%), Gaps = 10/269 (3%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K P LA++LVG+ S YV+NKIK ++GI +++ + +++++ ++
Sbjct: 25 LKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINE 84
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N D+ I+GI+VQLPLP +D+ KIL AVS KD+DGFHPLN+G L G FIPCT
Sbjct: 85 LNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYL-HSGISQGFIPCTA 143
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
GC+ ++ + + GKN V+IGRSNIVG P S LL + + +V+I H+ T N ITS+A
Sbjct: 144 LGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKA 203
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DIV+AA G + + P ++V+DVG + G +++GDV +E
Sbjct: 204 DIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS---------GNKIIGDVDFENVKSKVK 254
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
ITPVPGG+GPMT+A LL NT+ + K +
Sbjct: 255 YITPVPGGIGPMTIAFLLKNTVKAFKDSL 283
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 283
Score = 217 bits (554), Expect = 4e-70
Identities = 107/270 (39%), Positives = 158/270 (58%), Gaps = 12/270 (4%)
Query: 1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
+K G+ P LA ILVG+ S TYVR K AC VG+ S+ E T +++L +
Sbjct: 26 LKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEE 85
Query: 61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
N + ++GIL+Q P+P +DE DA+SL KDVDG L G +AM E + TP
Sbjct: 86 LNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATP 143
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
G + LL +E+ GK+AVV+GRS I+G P +++L +ATV+I H+ T+N ++ +A
Sbjct: 144 AGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQA 203
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
DI++ A G L++ W+K GAVV+D G P D +GD+ + +AS
Sbjct: 204 DIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGGG----------VGDIELQGIEEIAS 253
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
TPVPGGVGPMT+ L+ T+++A++A G
Sbjct: 254 AYTPVPGGVGPMTINTLIRQTVEAAEKALG 283
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 210 bits (536), Expect = 2e-67
Identities = 113/265 (42%), Positives = 155/265 (58%), Gaps = 11/265 (4%)
Query: 2 KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
K P L I+VG S+TYV +K KAC +VGI S V + TE E+L +
Sbjct: 25 KHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQL 84
Query: 62 NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
N DSS++ ILVQLPLP H+++ ++ ++ EKDVDGFHP N+G L +R ++ L CTPK
Sbjct: 85 NNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPK 143
Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
G + +L G++ G AVV+G SN+VG P S LL ATV+ H T + + T++AD
Sbjct: 144 GIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKAD 203
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
I+I A G N + +K GAVV+DVG VD +++GDV + +
Sbjct: 204 ILIVAVGKPNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAA 253
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAK 266
ITPVPGGVGPMT+ LL NT A+
Sbjct: 254 ITPVPGGVGPMTITELLYNTFQCAQ 278
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 208 bits (530), Expect = 1e-66
Identities = 110/263 (41%), Positives = 160/263 (60%), Gaps = 15/263 (5%)
Query: 7 KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
++P LA ILVG S+TYV K+KAC +VG+ S + + T +E+L + N D +
Sbjct: 32 RIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPN 91
Query: 67 INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
++GIL+Q P+P +DE D ++LEKDVDG L+ G L+M G E ++PCTP G + L
Sbjct: 92 VDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSM-GVET-YLPCTPYGMVLL 149
Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
L G+++ GKNAVV+GRS I+G P ++LL +ATV++ H+ T+N I +ADI++ A
Sbjct: 150 LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGA 209
Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP 246
G ++ W+ GAV+LD G P +V GD+ +A +S TPVP
Sbjct: 210 VGKPEFIKADWISEGAVLLDAGYNPGNV-------------GDIEISKAKDKSSFYTPVP 256
Query: 247 GGVGPMTVAMLLSNTLDSAKRAY 269
GGVGPMT+A+LL TL S K +
Sbjct: 257 GGVGPMTIAVLLLQTLYSFKEHF 279
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 136 bits (345), Expect = 8e-41
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
K G P LAVILVG+ SQ YVR+K KA EE+GI+S + + TE+E+L + N
Sbjct: 24 KEKGITPKLAVILVGDDPASQVYVRSKRKAAEELGIESELIRLPEDITEEELLALIEKLN 83
Query: 63 QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 96
D S++GILVQLPLP+H+DE KIL+A+ EKDVD
Sbjct: 84 ADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 103 bits (258), Expect = 1e-27
Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 116 IPCTPKGC-------IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 168
PCTP ELL + GV + GK +V+GRS IVG P LLQR ATV
Sbjct: 1 GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60
Query: 169 LTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMG 228
T + +AD+V+ + V W+KPGA V++ S
Sbjct: 61 KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINC-----------SPTK------ 103
Query: 229 DVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 266
+ ++ AS+ P+ GGVG +TVAM + N + S +
Sbjct: 104 -LSGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 65.5 bits (160), Expect = 7e-13
Identities = 50/210 (23%), Positives = 72/210 (34%), Gaps = 59/210 (28%)
Query: 91 LEKDVDGFHPLNIGNLAMRGR----EPLF---IPCTPKGCIELL---------IRSGVEI 134
KDV+G I NL R E +PCTP +++L + G +
Sbjct: 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60
Query: 135 MGKNAVVIGRSNIVGLPTSLLLQRHHATV-SI--------------------VHALTKNP 173
GK +I RS +VG P + LL A V S+ V
Sbjct: 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120
Query: 174 EQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCY 232
S++D+VI N V LK GA+ ++ +
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFE------------------ 162
Query: 233 EEAMRLASVITPVPGGVGPMTVAMLLSNTL 262
AS+ P +G +T+AMLL N L
Sbjct: 163 PSVKEKASIYVPS---IGKVTIAMLLRNLL 189
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 33.8 bits (78), Expect = 0.067
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 NPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT 209
+ E+ ADIV+ A +++ WLKPG + +G
Sbjct: 188 SAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGA 226
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 32.4 bits (74), Expect = 0.26
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 162 TVSIVHALTKNPEQITSEADIVIAAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDV 214
V +V ++ E++ +DIV V+ W+KPGA +L C +D
Sbjct: 210 NVEVVDSI----EEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRIDE 265
Query: 215 SV---DPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
+ D + + +EE + A + PV G
Sbjct: 266 GMEQGDVRKVVDNTGLYEAWFEEVPKPAHNLIPVIGV 302
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 31.8 bits (73), Expect = 0.30
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 174 EQITSEADIVIAAAGVAN-LVRGSWLKPGA 202
E +ADI+ A LVRG WLKPG
Sbjct: 184 EAAVRQADIISCATLSTEPLVRGEWLKPGT 213
>gnl|CDD|224949 COG2038, CobT, NaMN:DMB phosphoribosyltransferase [Coenzyme
metabolism].
Length = 347
Score = 31.5 bits (72), Expect = 0.40
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 173 PEQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCPV-DVSVDPS-----CEYGY 224
PE +T+ A I AA G A V G+ KP + + P D++ P+ E
Sbjct: 80 PEGVTTPAVINRAAGGAAINVLAAGAGAKPKVPDIGLDGRPTGDIAEGPAMSEEEAEAAI 139
Query: 225 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 262
++ E A ++ G G T A + L
Sbjct: 140 EAGKELGKELAKNGDDLLIIGESGPGNTTTAAAVLAAL 177
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 31.6 bits (72), Expect = 0.41
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 171 KNPEQITSEADIVIAA--AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSCEYGYRLM 227
+ E+ ADIV+ +++ W+KPG + VG CP +DP L
Sbjct: 185 TSAEEAVEGADIVVTVTPDKEFPILKAEWVKPGVHINAVGADCPGKTELDPDI----LLR 240
Query: 228 GDVCYE 233
D+ +
Sbjct: 241 ADIFVD 246
>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 31.3 bits (72), Expect = 0.50
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 36/113 (31%)
Query: 126 LLIRSGVEIMGKNAVVIG-----RSNIVGLPTSLLLQRHHATVSIV-------------- 166
L R GV++ GK +++G R+ I+ LL A ++IV
Sbjct: 113 LEERLGVDLKGKRILILGAGGAARAVILP-----LLDLGVAEITIVNRTVERAEELAKLF 167
Query: 167 -----HALTKNPEQITSEADIVIAA--AGVANLVRG-----SWLKPGAVVLDV 207
L ++ ++ D++I A AG++ + S L+PG +V D+
Sbjct: 168 GALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDM 220
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 30.1 bits (69), Expect = 1.3
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 26/67 (38%)
Query: 166 VHALTKNP---EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTC 210
V L NP E+ EAD+VI A L+ G +KPG+V+
Sbjct: 215 VTTLYSNPANLEEALKEADLVIGAV----LIPGAKAPKLVTEEMVKTMKPGSVI------ 264
Query: 211 PVDVSVD 217
VDV++D
Sbjct: 265 -VDVAID 270
>gnl|CDD|236034 PRK07502, PRK07502, cyclohexadienyl dehydrogenase; Validated.
Length = 307
Score = 29.9 bits (68), Expect = 1.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 165 IVHALTKNPEQITSEADIVI------AAAGVANLVRGSWLKPGAVVLDVGTCPVDV 214
+ +T + + AD+VI A+ VA + LKPGA+V DVG+ V
Sbjct: 52 LGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEI-APHLKPGAIVTDVGSVKASV 106
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 28.6 bits (65), Expect = 1.8
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 21/60 (35%)
Query: 174 EQITSEADIVIAAAGV----------ANLVRGSWLKPGAVVLDVGTCPVDVSVDP--SCE 221
E+ EAD+VI A + +V+ +KPG+V+ VDV+ D E
Sbjct: 78 EEAVKEADLVIGAVLIPGAKAPKLVTREMVKS--MKPGSVI-------VDVAADQGGCIE 128
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 29.2 bits (66), Expect = 2.0
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 163 VSIV--HALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 208
V+IV A+T+ +IT E IAA+GV +L+ WL A VLD+G
Sbjct: 232 VAIVAGRAITEASGRITPETAPAIAASGV-DLISVGWLTHSAPVLDIG 278
>gnl|CDD|237674 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 502
Score = 28.9 bits (65), Expect = 3.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 140 VVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEADIVIAA 186
VV G NI LPT L RH A V I +L + P + + + AA
Sbjct: 111 VVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPSTLPARRESAYAA 159
>gnl|CDD|217651 pfam03635, Vps35, Vacuolar protein sorting-associated protein 35.
Vacuolar protein sorting-associated protein (Vps) 35 is
one of around 50 proteins involved in protein
trafficking. In particular, Vps35 assembles into a
retromer complex with at least four other proteins Vps5,
Vps17, Vps26 and Vps29. Vps35 contains a central region
of weaker sequence similarity, thought to indicate the
presence of at least three domains.
Length = 741
Score = 28.7 bits (65), Expect = 4.0
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 24/85 (28%)
Query: 14 ILVG---------ERRDSQTYVR-------NKIKACEEVGIK-----SIVTEFADGC--- 49
ILVG E D + Y ++ C +V + I+ F D
Sbjct: 204 ILVGSNLVRLSQLEGVDLEMYKETILPRILEQVVNCRDVLAQEYLLEVIIQVFPDEFHLA 263
Query: 50 TEDEVLNALSNYNQDSSINGILVQL 74
T D +L+A N + IL+ L
Sbjct: 264 TLDTLLSACLQLNPGVDVKKILITL 288
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
and metabolism].
Length = 251
Score = 28.4 bits (64), Expect = 4.1
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 10 GLAVILVG--ERR----DSQTYVRNKIKACEEVGIKSIV------TEFADGCTEDEVLNA 57
G +L+G ERR ++ + K+KA +E G+ I+ E G T + +
Sbjct: 88 GAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQ 147
Query: 58 LSN 60
L+
Sbjct: 148 LAA 150
>gnl|CDD|204176 pfam09242, FCSD-flav_bind, Flavocytochrome c sulphide
dehydrogenase, flavin-binding. Members of this family
adopt a structure consisting of a beta(3,4)-alpha(3)
core, and an alpha+beta sandwich. They are required for
binding to flavin, and subsequent electron transfer.
Length = 70
Score = 26.4 bits (59), Expect = 4.7
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 12/37 (32%)
Query: 230 VCY-----EEAMRLASV-------ITPVPGGVGPMTV 254
CY + A+ +A V I VPGGV P+
Sbjct: 9 TCYSLVAPDYAISVAGVYRLDDGKIVEVPGGVSPLDA 45
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
Provisional.
Length = 606
Score = 28.2 bits (63), Expect = 5.0
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 166 VHALTKNPEQITSEADIVIAAAGVANLVRGS----WLKPGAVVLDVGTCPV--DVSVDP 218
VH L K E+I + ADI + G N V GS L G V P+ D++VDP
Sbjct: 440 VHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHCLLATGKV------DPLHPDLAVDP 492
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 27.9 bits (63), Expect = 5.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 172 NPEQITSEADIVI----AAAGVANLVRG-----SWLKPGAVVLDVGTCPVDVSV 216
+P + +EAD+VI A V ++ G LKPGA+V+D+ T + +
Sbjct: 50 SPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETAR 103
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea.
Length = 242
Score = 27.9 bits (63), Expect = 5.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 15 LVG--ERR----DSQTYVRNKIKACEEVGIKSIV------TEFADGCTEDEVLNAL 58
++G ERR ++ V K+KA E G+ I+ E G TE+ V L
Sbjct: 89 IIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQL 144
>gnl|CDD|116052 pfam07431, DUF1512, Protein of unknown function (DUF1512). This
family consists of several archaeal proteins of around
370 residues in length. The function of this family is
unknown.
Length = 356
Score = 27.8 bits (62), Expect = 6.3
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 232 YEEAMRLASVITPVPGGVGPMTVAMLLSN 260
Y EA P+ GP+ A L+ N
Sbjct: 169 YMEACNAFLKGVPIGDSAGPLVAARLIGN 197
>gnl|CDD|131900 TIGR02853, spore_dpaA, dipicolinic acid synthetase, A subunit.
This predicted Rossman fold-containing protein is the A
subunit of dipicolinic acid synthetase as found in most,
though not all, endospore-forming low-GC Gram-positive
bacteria; it is absent in Clostridium. The B subunit is
represented by TIGR02852. This protein is also known as
SpoVFA [Cellular processes, Sporulation and
germination].
Length = 287
Score = 27.8 bits (62), Expect = 7.2
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 40/169 (23%)
Query: 116 IPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI--------- 165
IP T +G I + I I G N +V+G G+ + A V +
Sbjct: 131 IP-TAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLA 188
Query: 166 ------VHALT-KNPEQITSEADIVI----AAAGVANLVRGSWLKPGAVVLDVGTCPVDV 214
+ E+ +E DIVI A A+++ S L AV++D+ + P
Sbjct: 189 RITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVL--SKLPKHAVIIDLASKPGGT 246
Query: 215 SVDPSCEYGYRLMGDVCYEEAMRLASVITP-VPGGVGPMTVAMLLSNTL 262
D Y + + +++ P +PG V P T +L+N L
Sbjct: 247 --------------DFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVL 281
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 27.7 bits (62), Expect = 7.9
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 166 VHALTKNPEQI---TSEADIVIAA-----AGVANLVRGSW---LKPGAVVLDVGTCPVDV 214
VH L P I +AD+VI A A LV +KPG+V+ VDV
Sbjct: 215 VHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVI-------VDV 267
Query: 215 SVDP-SCEYGYRL--MGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSN 260
++D C D YE + + +PG V P T L+N
Sbjct: 268 AIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPGAV-PRTSTQALTN 315
>gnl|CDD|227632 COG5322, COG5322, Predicted dehydrogenase [General function
prediction only].
Length = 351
Score = 27.5 bits (61), Expect = 7.9
Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 54/210 (25%)
Query: 63 QDSSINGILVQLP-LPQHLDEG------KILDAVSLEKDVD-------GFHPLNIGNLA- 107
Q I G LV+ P LP+ L ++L+A++L + + GF + +GNL
Sbjct: 67 QGKVIEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSI-VGNLGQ 125
Query: 108 ---MRGREPLFIPCTP----------KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSL 154
+R E F T + ++ + G+++ ++G + + +
Sbjct: 126 NVQVRNVELTFTRFTTGNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIAR 185
Query: 155 LLQRHHATVSIVH---------ALTKNPEQ-----ITS-------EADIVIAAAGVAN-L 192
L ++ LT E+ I S E +V A+
Sbjct: 186 WLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMPKGVE 245
Query: 193 VRGSWLKPGAVVLDVGTCPVDVSVDPSCEY 222
+ LKPG +++D G P D VD S +
Sbjct: 246 IFPQHLKPGCLIVDGGY-PKD--VDTSVKN 272
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 27.6 bits (62), Expect = 8.1
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 13 VILVGERRDSQTYVRNKIKACE 34
VILVGE RD +T +R + A E
Sbjct: 201 VILVGEMRDLET-IRLALTAAE 221
>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function
unknown].
Length = 322
Score = 27.4 bits (61), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 238 LASVITPVPGGVGPMTVAM--LLSNTLDSAKRA 268
LA VI+P PGG+G + LLS A A
Sbjct: 253 LAGVISPTPGGLGVVEAVFIALLSALGIPASTA 285
>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 27.4 bits (61), Expect = 9.3
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
R V++ GK ++ G S+ +G + R ATV V + + + + AD + A G
Sbjct: 33 RQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAV---ARREDLLDAVADRITRAGG 89
Query: 189 VA 190
A
Sbjct: 90 DA 91
>gnl|CDD|214707 smart00518, AP2Ec, AP endonuclease family 2. These endonucleases
play a role in DNA repair. Cleave phosphodiester bonds
at apurinic or apyrimidinic sites.
Length = 273
Score = 27.3 bits (61), Expect = 9.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 30 IKACEEVGIKSIV--TEFADGCTEDEVLN 56
IK CEE+GIK++V +++E LN
Sbjct: 90 IKRCEELGIKALVFHPGSYLKQSKEEALN 118
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 27.2 bits (61), Expect = 9.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 234 EAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 265
EA L S+I P G G T+A L++ T ++A
Sbjct: 44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNAA 75
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 27.6 bits (61), Expect = 10.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 2 KKSIGKVPGLAVILVGERRDS----QTYVRNKI-KACEEVGIKSIVTEFAD 47
+K+ G +P I G R + + + +I K EEVG+KS++ +F D
Sbjct: 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPD 1341
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.399
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,894,003
Number of extensions: 1346534
Number of successful extensions: 1646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1563
Number of HSP's successfully gapped: 85
Length of query: 272
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 177
Effective length of database: 6,723,972
Effective search space: 1190143044
Effective search space used: 1190143044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)