BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024121
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 155/270 (57%), Gaps = 7/270 (2%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNA 67
+S +GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKE 80
Query: 68 XXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFI 123
+I + + ++VS AAGV + K L + R I
Sbjct: 81 TVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVI 140
Query: 124 RVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--P 181
R M NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG P
Sbjct: 141 RCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGP 200
Query: 182 AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 241
AY F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG T
Sbjct: 201 AYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGAT 260
Query: 242 IAGIHELEKSGFRGILMNAVVAAAKRSREL 271
I +H LE GFR +L+NAV A+ R+REL
Sbjct: 261 IHALHVLESGGFRSLLINAVEASCIRTREL 290
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 153/267 (57%), Gaps = 7/267 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 5 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K L + R IR M
Sbjct: 65 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 124
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 125 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 184
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 185 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 244
Query: 246 HELEKSGFRGILMNAVVAAAKRSRELS 272
H LE GFR +L+NAV A+ R+REL
Sbjct: 245 HVLESGGFRSLLINAVEASCIRTRELQ 271
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 153/266 (57%), Gaps = 7/266 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 5 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K L + R IR M
Sbjct: 65 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 124
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIF 185
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG PAY F
Sbjct: 125 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 184
Query: 186 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 185 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 244
Query: 246 HELEKSGFRGILMNAVVAAAKRSREL 271
H LE GFR +L+NAV A+ R+REL
Sbjct: 245 HVLESGGFRSLLINAVEASCIRTREL 270
>pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|B Chain B, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|C Chain C, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|D Chain D, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|E Chain E, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
Length = 262
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 105/183 (57%), Gaps = 4/183 (2%)
Query: 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATE 148
I+P LS K LL+S+ G+ + L+E G ++ + V PNTP VGE + +
Sbjct: 77 NIKPYLSSK-LLISICGGLNIGKLEEXVGSENKIVWVXPNTPCLVGEGSFIYCSNKNVNS 135
Query: 149 EDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAIEALADGGVAAGLPRELAL 206
D + + +F S G I EK D T +SG PAY++L IE+L D GV GL REL+
Sbjct: 136 TDKKYVNDIFNSCGIIHEIKEKDXDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSK 195
Query: 207 GLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAK 266
L QT+ G+ V KS + QLKD++ SPGG T G++ LEK+ F+ + NAV AA +
Sbjct: 196 NLVLQTIKGSVEXVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVXNAVEAACE 255
Query: 267 RSR 269
+S+
Sbjct: 256 KSK 258
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 131/266 (49%), Gaps = 8/266 (3%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXX 71
+ FIG G A +I G+ +G P+RIC S L + D F E GV DN
Sbjct: 6 ITFIGGGNXARNIVVGLIANG-YDPNRICVTNRS-LDKLDFFKEKCGVHTTQDNRQGALN 63
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLV-SVAAGVKLKDLQEWTGH-SRFIRVMPNT 129
+++ +LS K+LV S+A GV +++W G SR +R PNT
Sbjct: 64 ADVVVLAVKPHQIKXVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAXPNT 123
Query: 130 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAITGLSG--PAYIFL 186
PS+V AT + T ++ L + +VG IW + E + I LSG PAYIFL
Sbjct: 124 PSSVRAGATGLFANETVDKDQKNLAESIXRAVGLVIWVSSEDQIEKIAALSGSGPAYIFL 183
Query: 187 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 246
EAL + GL +E A L QTVLGAA ++ + QL+ V SPGGTT I
Sbjct: 184 IXEALQEAAEQLGLTKETAELLTEQTVLGAARXALETEQSVVQLRQFVTSPGGTTEQAIK 243
Query: 247 ELEKSGFRGILMNAVVAAAKRSRELS 272
LE R + + A+ AA R++ELS
Sbjct: 244 VLESGNLRELFIKALTAAVNRAKELS 269
>pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr38b
Length = 247
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 123/243 (50%), Gaps = 3/243 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXX 72
+GFIG G + G ++ ++I + + ++A E G+ +DNN
Sbjct: 5 IGFIGCGNXGXAXIGGXINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64
Query: 73 XXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTPS 131
+I+ ++ ++V++AAG ++ + + + +RV PNTP+
Sbjct: 65 DILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVXPNTPA 124
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAIE 189
VGE + + TE+D E + +F S G+ EKL D +T +SG PAY++ IE
Sbjct: 125 LVGEGXSALCPNEXVTEKDLEDVLNIFNSFGQTEIVSEKLXDVVTSVSGSSPAYVYXIIE 184
Query: 190 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 249
A AD V G PR A A+Q VLG+A V ++G HPG+LKD V SPGGTTI + LE
Sbjct: 185 AXADAAVLDGXPRNQAYKFAAQAVLGSAKXVLETGIHPGELKDXVCSPGGTTIEAVATLE 244
Query: 250 KSG 252
+ G
Sbjct: 245 EKG 247
>pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 136/263 (51%), Gaps = 13/263 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAXXXX 71
+G IG GKMA +I KG+ ++ P + I + S+L+R ++ E + + +
Sbjct: 6 IGIIGVGKMASAIIKGLKQT---PHELIISG--SSLERSKEIAEQLALPYAMSHQDLIDQ 60
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTP 130
++PL K+ ++S+AAG+ L+ L + G +R+MPN
Sbjct: 61 VDLVILGIKPQLFETV---LKPL-HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMN 116
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAI 188
+ + +++T ++ ++E + L S G + EK FD T L+G PAYI+L I
Sbjct: 117 AQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFI 176
Query: 189 EALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 248
EALA GV G+P+ AL + +QTVL +AS + S + P D + SPGGTTIAG+ EL
Sbjct: 177 EALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMEL 236
Query: 249 EKSGFRGILMNAVVAAAKRSREL 271
E+ G + +A+ +++ L
Sbjct: 237 ERLGLTATVSSAIDKTIDKAKSL 259
>pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|B Chain B, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|C Chain C, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|D Chain D, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|E Chain E, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 95 LSRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGEL 153
L K+ ++S AAG+ L+ L + G +R+ PN + + +++T ++ ++E
Sbjct: 80 LHFKQPIISXAAGISLQRLATFVGQDLPLLRIXPNXNAQILQSSTALTGNALVSQELQAR 139
Query: 154 IGKLFGSVGKIWRADEKLFDAITGLSG--PAYIFLAIEALADGGVAAGLPRELALGLASQ 211
+ L S G + EK FD T L+G PAYI+L IEALA GV G+P+ AL + +Q
Sbjct: 140 VRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQ 199
Query: 212 TVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 271
TVL +AS + S + P D + SPGGTTIAG+ ELE+ G + +A+ +++ L
Sbjct: 200 TVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLXELERLGLTATVSSAIDKTIDKAKSL 259
>pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase
From Neisseria Meningitides Mc58
pdb|2AG8|A Chain A, Nadp Complex Of Pyrroline-5-Carboxylate Reductase From
Neisseria Meningitidis
Length = 263
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 4/175 (2%)
Query: 100 LLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLF 158
L++SVAAG+ + L + G +R +RV PNTP +G + +E D + ++
Sbjct: 83 LVLSVAAGLSVGTLSRYLGGTRRIVRVXPNTPGKIGLGVSGXYAEAEVSETDRRIADRIX 142
Query: 159 GSVG-KIWRADEKLFDAITGLSG--PAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 215
SVG +W DE+ ITG+SG PAY+F ++AL + + G A L+ T G
Sbjct: 143 KSVGLTVWLDDEEKXHGITGISGSGPAYVFYLLDALQNAAIRQGFDXAEARALSLATFKG 202
Query: 216 AASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRE 270
A ++ ++G+ +L+ +V S GGTT + + + V A +RS+E
Sbjct: 203 AVALAEQTGEDFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQE 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,159,819
Number of Sequences: 62578
Number of extensions: 273052
Number of successful extensions: 701
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 12
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)