Query 024121
Match_columns 272
No_of_seqs 263 out of 2087
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0345 ProC Pyrroline-5-carbo 100.0 6.8E-53 1.5E-57 348.8 31.6 261 10-272 1-264 (266)
2 PRK12491 pyrroline-5-carboxyla 100.0 1.5E-52 3.3E-57 354.0 32.8 262 10-272 2-267 (272)
3 PTZ00431 pyrroline carboxylate 100.0 2.6E-47 5.5E-52 321.3 31.1 257 8-272 1-260 (260)
4 PLN02688 pyrroline-5-carboxyla 100.0 1.2E-46 2.5E-51 319.3 33.6 262 11-272 1-264 (266)
5 PRK06928 pyrroline-5-carboxyla 100.0 8.1E-47 1.8E-51 320.9 30.8 260 10-271 1-266 (277)
6 PRK07679 pyrroline-5-carboxyla 100.0 2.2E-46 4.9E-51 319.1 32.6 264 8-272 1-269 (279)
7 PRK11880 pyrroline-5-carboxyla 100.0 4.3E-44 9.4E-49 303.7 32.0 259 10-272 2-265 (267)
8 PRK07680 late competence prote 100.0 7.4E-43 1.6E-47 296.7 31.9 257 11-270 1-262 (273)
9 TIGR00112 proC pyrroline-5-car 100.0 1.5E-42 3.2E-47 289.6 28.2 239 31-270 3-245 (245)
10 PRK06476 pyrroline-5-carboxyla 100.0 2.3E-41 4.9E-46 285.4 29.1 248 11-269 1-254 (258)
11 KOG3124 Pyrroline-5-carboxylat 100.0 1.4E-41 3E-46 272.9 24.2 261 11-272 1-265 (267)
12 PRK07634 pyrroline-5-carboxyla 100.0 1.5E-39 3.3E-44 272.6 29.0 240 7-249 1-245 (245)
13 TIGR00465 ilvC ketol-acid redu 100.0 2.2E-30 4.7E-35 222.1 24.3 218 9-238 2-241 (314)
14 COG2084 MmsB 3-hydroxyisobutyr 100.0 2E-29 4.3E-34 210.9 23.2 247 11-271 1-271 (286)
15 KOG0409 Predicted dehydrogenas 100.0 1.4E-26 3.1E-31 190.4 21.2 249 9-271 34-306 (327)
16 PRK08507 prephenate dehydrogen 99.9 9.5E-26 2.1E-30 192.0 23.3 246 11-270 1-270 (275)
17 PRK07417 arogenate dehydrogena 99.9 3.2E-26 7E-31 195.1 20.4 248 11-270 1-272 (279)
18 PRK06545 prephenate dehydrogen 99.9 3.4E-26 7.3E-31 201.3 19.4 245 11-270 1-274 (359)
19 PRK15461 NADH-dependent gamma- 99.9 4.5E-25 9.7E-30 189.5 24.4 249 11-270 2-271 (296)
20 PRK14806 bifunctional cyclohex 99.9 4.7E-26 1E-30 218.2 20.3 248 10-270 3-279 (735)
21 PRK15059 tartronate semialdehy 99.9 1E-24 2.2E-29 186.6 25.1 245 11-270 1-268 (292)
22 PRK08655 prephenate dehydrogen 99.9 5.8E-25 1.3E-29 197.5 24.4 246 11-269 1-268 (437)
23 PRK07502 cyclohexadienyl dehyd 99.9 5.3E-24 1.1E-28 184.0 21.8 255 5-270 2-283 (307)
24 PLN02256 arogenate dehydrogena 99.9 8E-24 1.7E-28 181.3 21.5 243 8-267 34-296 (304)
25 TIGR01692 HIBADH 3-hydroxyisob 99.9 2.7E-23 5.8E-28 178.0 22.8 245 15-270 1-272 (288)
26 COG0287 TyrA Prephenate dehydr 99.9 4E-23 8.8E-28 174.0 22.8 250 9-270 2-274 (279)
27 PLN02350 phosphogluconate dehy 99.9 3.2E-23 7E-28 186.9 21.9 194 9-210 5-225 (493)
28 PRK12490 6-phosphogluconate de 99.9 1.2E-22 2.6E-27 174.8 22.9 199 11-217 1-218 (299)
29 TIGR01505 tartro_sem_red 2-hyd 99.9 2.2E-22 4.9E-27 172.7 24.2 248 12-271 1-269 (291)
30 PLN02858 fructose-bisphosphate 99.9 1.3E-22 2.7E-27 202.4 25.8 249 9-270 3-276 (1378)
31 PRK05479 ketol-acid reductoiso 99.9 3.3E-22 7.2E-27 171.3 23.8 194 7-207 14-226 (330)
32 PRK11559 garR tartronate semia 99.9 5.3E-22 1.1E-26 170.8 25.0 248 10-271 2-272 (296)
33 PRK11199 tyrA bifunctional cho 99.9 3.9E-22 8.5E-27 176.1 23.4 234 8-270 96-348 (374)
34 PF03446 NAD_binding_2: NAD bi 99.9 2.2E-23 4.8E-28 163.7 13.4 151 10-169 1-163 (163)
35 PRK09599 6-phosphogluconate de 99.9 1.1E-21 2.5E-26 168.9 22.6 193 11-212 1-213 (301)
36 TIGR00872 gnd_rel 6-phosphoglu 99.9 5.9E-21 1.3E-25 164.1 25.6 195 11-213 1-212 (298)
37 PTZ00142 6-phosphogluconate de 99.9 1.2E-20 2.6E-25 170.1 26.2 192 11-210 2-219 (470)
38 PRK06130 3-hydroxybutyryl-CoA 99.9 7.6E-21 1.7E-25 164.7 22.5 194 9-212 3-219 (311)
39 PLN02858 fructose-bisphosphate 99.9 1.3E-20 2.9E-25 188.0 25.2 248 9-270 323-596 (1378)
40 PRK07531 bifunctional 3-hydrox 99.9 3.2E-20 7E-25 169.7 25.7 193 9-212 3-220 (495)
41 PLN02712 arogenate dehydrogena 99.9 1.5E-20 3.2E-25 176.2 22.1 243 8-267 367-629 (667)
42 PRK08818 prephenate dehydrogen 99.9 2.4E-20 5.2E-25 162.8 21.0 237 8-270 2-267 (370)
43 TIGR00873 gnd 6-phosphoglucona 99.9 6.5E-20 1.4E-24 165.4 24.4 191 12-210 1-216 (467)
44 PF14748 P5CR_dimer: Pyrroline 99.9 7.2E-21 1.6E-25 138.0 13.5 105 167-271 1-107 (107)
45 PRK06129 3-hydroxyacyl-CoA deh 99.9 2.1E-19 4.5E-24 155.4 23.5 216 11-242 3-246 (308)
46 PRK05808 3-hydroxybutyryl-CoA 99.8 1.5E-18 3.2E-23 148.3 25.1 154 9-169 2-183 (282)
47 PRK12557 H(2)-dependent methyl 99.8 2.6E-18 5.7E-23 149.3 23.9 208 11-225 1-253 (342)
48 PLN02712 arogenate dehydrogena 99.8 2E-18 4.4E-23 162.0 23.6 236 10-265 52-310 (667)
49 PLN02545 3-hydroxybutyryl-CoA 99.8 2.7E-18 5.9E-23 147.6 22.5 156 8-169 2-184 (295)
50 PRK00094 gpsA NAD(P)H-dependen 99.8 3.3E-18 7.2E-23 149.2 23.2 148 10-164 1-173 (325)
51 PF02153 PDH: Prephenate dehyd 99.8 4.8E-19 1E-23 149.1 16.4 224 25-258 1-245 (258)
52 PRK07530 3-hydroxybutyryl-CoA 99.8 5.5E-18 1.2E-22 145.5 21.7 156 7-169 1-184 (292)
53 PRK08293 3-hydroxybutyryl-CoA 99.8 1.5E-17 3.2E-22 142.5 23.2 190 9-209 2-221 (287)
54 TIGR01915 npdG NADPH-dependent 99.8 2E-18 4.2E-23 142.1 16.2 151 11-169 1-189 (219)
55 PRK06035 3-hydroxyacyl-CoA deh 99.8 1.6E-17 3.5E-22 142.6 22.1 154 9-169 2-186 (291)
56 PRK14618 NAD(P)H-dependent gly 99.8 1.8E-17 3.9E-22 144.7 21.8 191 9-210 3-239 (328)
57 PF03807 F420_oxidored: NADP o 99.8 6.2E-19 1.3E-23 126.2 9.9 93 12-107 1-96 (96)
58 PRK09260 3-hydroxybutyryl-CoA 99.8 8.8E-17 1.9E-21 137.8 22.7 153 11-169 2-182 (288)
59 PRK09287 6-phosphogluconate de 99.8 1.9E-16 4E-21 142.5 24.6 182 21-210 1-208 (459)
60 PF10727 Rossmann-like: Rossma 99.8 9.4E-19 2E-23 130.1 6.8 115 9-127 9-127 (127)
61 PRK08268 3-hydroxy-acyl-CoA de 99.8 1.6E-16 3.4E-21 145.5 22.7 192 9-213 6-226 (507)
62 PRK07066 3-hydroxybutyryl-CoA 99.8 2.3E-16 5.1E-21 135.7 22.5 157 6-168 3-183 (321)
63 PRK14619 NAD(P)H-dependent gly 99.8 1.3E-16 2.7E-21 138.0 19.4 136 9-164 3-149 (308)
64 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 2.9E-16 6.4E-21 143.3 22.3 190 9-211 4-222 (503)
65 TIGR01724 hmd_rel H2-forming N 99.7 1.7E-15 3.7E-20 127.4 24.5 206 11-223 1-251 (341)
66 TIGR03026 NDP-sugDHase nucleot 99.7 3.4E-16 7.3E-21 140.6 19.8 189 11-210 1-244 (411)
67 PRK12439 NAD(P)H-dependent gly 99.7 2.2E-15 4.8E-20 131.9 23.5 155 8-170 5-184 (341)
68 COG0240 GpsA Glycerol-3-phosph 99.7 2.4E-15 5.2E-20 127.6 22.1 154 10-170 1-178 (329)
69 PRK07819 3-hydroxybutyryl-CoA 99.7 2.5E-15 5.5E-20 128.3 22.1 153 10-169 5-187 (286)
70 PRK08229 2-dehydropantoate 2-r 99.7 1.3E-15 2.8E-20 133.7 20.6 148 10-169 2-177 (341)
71 COG1023 Gnd Predicted 6-phosph 99.7 1.2E-14 2.6E-19 116.4 23.6 218 11-238 1-244 (300)
72 PRK11064 wecC UDP-N-acetyl-D-m 99.7 7.8E-16 1.7E-20 137.9 19.0 191 9-210 2-248 (415)
73 PRK06522 2-dehydropantoate 2-r 99.7 2.9E-15 6.2E-20 129.4 21.7 153 11-170 1-174 (304)
74 PRK14620 NAD(P)H-dependent gly 99.7 6.8E-15 1.5E-19 128.4 23.1 153 11-170 1-179 (326)
75 COG2085 Predicted dinucleotide 99.7 1.6E-15 3.6E-20 120.4 15.0 151 10-168 1-179 (211)
76 PF02737 3HCDH_N: 3-hydroxyacy 99.7 2.1E-15 4.5E-20 120.1 15.3 149 12-167 1-177 (180)
77 PF01210 NAD_Gly3P_dh_N: NAD-d 99.7 2.3E-15 5E-20 117.4 12.5 121 12-137 1-143 (157)
78 PRK06249 2-dehydropantoate 2-r 99.6 1.4E-13 3.1E-18 119.3 24.3 156 7-169 2-185 (313)
79 PRK12921 2-dehydropantoate 2-r 99.6 9.5E-14 2.1E-18 120.0 22.4 154 11-170 1-177 (305)
80 PTZ00345 glycerol-3-phosphate 99.6 9.4E-14 2E-18 121.6 21.9 154 9-170 10-203 (365)
81 PRK13403 ketol-acid reductoiso 99.6 1.2E-13 2.6E-18 117.2 21.4 192 6-207 12-224 (335)
82 PRK15182 Vi polysaccharide bio 99.6 7E-14 1.5E-18 125.4 20.4 190 10-209 6-243 (425)
83 TIGR03376 glycerol3P_DH glycer 99.6 1.5E-13 3.3E-18 119.5 21.1 143 12-160 1-184 (342)
84 PRK15057 UDP-glucose 6-dehydro 99.6 1.2E-13 2.5E-18 122.6 20.2 186 11-210 1-233 (388)
85 COG1893 ApbA Ketopantoate redu 99.6 1.8E-12 3.9E-17 111.5 24.2 153 11-169 1-175 (307)
86 PRK06444 prephenate dehydrogen 99.6 2E-13 4.3E-18 109.5 15.5 181 11-250 1-190 (197)
87 COG1250 FadB 3-hydroxyacyl-CoA 99.5 1.7E-12 3.7E-17 110.2 19.0 150 8-164 1-177 (307)
88 TIGR02437 FadB fatty oxidation 99.5 2.3E-12 5E-17 122.6 21.9 154 8-168 311-492 (714)
89 PRK11730 fadB multifunctional 99.5 3.1E-12 6.8E-17 121.9 22.2 153 9-168 312-492 (715)
90 TIGR02441 fa_ox_alpha_mit fatt 99.5 2.8E-12 6.1E-17 122.3 21.4 154 8-168 333-514 (737)
91 PRK05708 2-dehydropantoate 2-r 99.5 2.8E-12 6.1E-17 110.7 19.6 154 10-169 2-175 (305)
92 COG0362 Gnd 6-phosphogluconate 99.5 1.5E-12 3.2E-17 111.5 17.3 194 9-211 2-221 (473)
93 TIGR02440 FadJ fatty oxidation 99.5 4.8E-12 1E-16 120.4 22.5 153 9-168 303-484 (699)
94 PRK11154 fadJ multifunctional 99.5 8.8E-12 1.9E-16 118.8 22.2 153 9-168 308-489 (708)
95 KOG2380 Prephenate dehydrogena 99.5 7.3E-12 1.6E-16 105.3 17.7 164 10-179 52-230 (480)
96 COG0059 IlvC Ketol-acid reduct 99.4 3.2E-11 7E-16 100.2 20.4 206 7-221 15-241 (338)
97 PF07991 IlvN: Acetohydroxy ac 99.4 6.9E-13 1.5E-17 101.2 9.8 115 9-131 3-121 (165)
98 PRK05225 ketol-acid reductoiso 99.4 3.4E-11 7.3E-16 106.2 20.7 207 8-223 34-267 (487)
99 PF02558 ApbA: Ketopantoate re 99.4 5.8E-12 1.3E-16 97.6 11.7 108 13-126 1-123 (151)
100 PRK08269 3-hydroxybutyryl-CoA 99.4 8.1E-11 1.8E-15 101.8 19.5 181 21-212 1-218 (314)
101 PRK11861 bifunctional prephena 99.4 1.3E-11 2.9E-16 117.2 15.0 188 75-270 1-213 (673)
102 PLN02353 probable UDP-glucose 99.4 1.5E-10 3.2E-15 105.0 20.5 196 10-210 1-252 (473)
103 COG1004 Ugd Predicted UDP-gluc 99.3 8.5E-10 1.8E-14 95.5 21.8 245 11-269 1-295 (414)
104 PF03721 UDPG_MGDP_dh_N: UDP-g 99.2 7.7E-11 1.7E-15 94.2 9.5 94 11-110 1-124 (185)
105 COG5495 Uncharacterized conser 99.2 1.5E-09 3.2E-14 86.8 15.9 240 1-252 1-255 (289)
106 PRK12480 D-lactate dehydrogena 99.2 5.3E-10 1.1E-14 97.3 12.9 104 6-118 142-249 (330)
107 KOG2304 3-hydroxyacyl-CoA dehy 99.2 4.2E-11 9E-16 95.4 5.3 159 1-165 2-192 (298)
108 KOG2711 Glycerol-3-phosphate d 99.2 1E-09 2.2E-14 92.7 13.5 151 8-162 19-208 (372)
109 COG0677 WecC UDP-N-acetyl-D-ma 99.1 9.2E-09 2E-13 88.9 19.5 192 11-210 10-251 (436)
110 COG4007 Predicted dehydrogenas 99.1 5.2E-08 1.1E-12 79.3 21.0 156 10-170 1-196 (340)
111 cd01065 NAD_bind_Shikimate_DH 99.1 1.5E-10 3.3E-15 90.0 6.4 93 8-106 17-117 (155)
112 PRK07574 formate dehydrogenase 99.1 8.1E-10 1.8E-14 97.6 11.4 107 7-118 189-299 (385)
113 PLN03139 formate dehydrogenase 99.1 1.1E-09 2.3E-14 96.8 11.7 107 7-118 196-306 (386)
114 PRK13243 glyoxylate reductase; 99.1 1.7E-09 3.7E-14 94.3 11.8 105 7-118 147-255 (333)
115 PRK13302 putative L-aspartate 99.1 1.2E-09 2.7E-14 92.5 10.1 89 8-104 4-97 (271)
116 PRK13304 L-aspartate dehydroge 99.0 1.9E-09 4E-14 91.3 10.7 81 10-93 1-83 (265)
117 KOG2653 6-phosphogluconate deh 99.0 6.8E-09 1.5E-13 88.1 13.4 193 10-211 6-225 (487)
118 PRK08605 D-lactate dehydrogena 99.0 1.3E-09 2.7E-14 95.2 9.1 105 6-118 142-251 (332)
119 TIGR00745 apbA_panE 2-dehydrop 99.0 1E-07 2.2E-12 81.8 19.8 137 20-164 1-161 (293)
120 PF02826 2-Hacid_dh_C: D-isome 99.0 2.2E-09 4.7E-14 85.5 8.6 107 6-118 32-142 (178)
121 TIGR02853 spore_dpaA dipicolin 98.9 1.2E-08 2.6E-13 87.1 11.3 92 7-106 148-241 (287)
122 PRK06436 glycerate dehydrogena 98.9 9.5E-09 2.1E-13 88.3 10.0 101 7-118 119-224 (303)
123 TIGR01327 PGDH D-3-phosphoglyc 98.9 1.4E-08 3.1E-13 93.8 11.4 106 7-118 135-244 (525)
124 PRK15469 ghrA bifunctional gly 98.9 1.2E-08 2.5E-13 88.2 9.9 104 8-118 134-241 (312)
125 PRK13581 D-3-phosphoglycerate 98.9 2.2E-08 4.7E-13 92.7 11.3 105 7-118 137-245 (526)
126 PF01408 GFO_IDH_MocA: Oxidore 98.8 9.6E-08 2.1E-12 70.8 11.3 100 11-116 1-105 (120)
127 PRK06141 ornithine cyclodeamin 98.8 3.8E-08 8.2E-13 85.4 9.4 89 9-106 124-219 (314)
128 cd05213 NAD_bind_Glutamyl_tRNA 98.8 8.6E-08 1.9E-12 83.1 11.1 96 8-107 176-275 (311)
129 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 2.6E-07 5.7E-12 74.8 12.9 92 5-107 23-117 (200)
130 PRK14194 bifunctional 5,10-met 98.7 3E-08 6.4E-13 84.3 7.6 74 7-105 156-231 (301)
131 PLN02928 oxidoreductase family 98.7 7.9E-08 1.7E-12 84.3 10.4 106 7-118 156-277 (347)
132 PRK08306 dipicolinate synthase 98.7 1.4E-07 3.1E-12 81.0 11.4 91 8-106 150-242 (296)
133 COG0111 SerA Phosphoglycerate 98.7 1.1E-07 2.4E-12 82.3 10.0 106 7-118 139-248 (324)
134 PRK00257 erythronate-4-phospha 98.7 5.3E-08 1.1E-12 86.0 7.9 103 6-118 112-222 (381)
135 KOG2305 3-hydroxyacyl-CoA dehy 98.7 1.1E-07 2.3E-12 76.3 8.8 153 9-167 2-183 (313)
136 COG1712 Predicted dinucleotide 98.7 1.5E-07 3.3E-12 75.4 9.5 95 11-109 1-96 (255)
137 PRK15409 bifunctional glyoxyla 98.7 2.6E-07 5.6E-12 80.3 11.6 105 7-118 142-251 (323)
138 smart00859 Semialdhyde_dh Semi 98.7 1.1E-07 2.4E-12 70.8 7.7 93 12-108 1-102 (122)
139 COG1052 LdhA Lactate dehydroge 98.7 2.7E-07 5.8E-12 79.9 11.1 104 8-118 144-251 (324)
140 TIGR02371 ala_DH_arch alanine 98.7 2.1E-07 4.6E-12 81.1 10.4 90 9-105 127-222 (325)
141 PRK11790 D-3-phosphoglycerate 98.6 2.6E-07 5.6E-12 82.9 10.5 104 6-118 147-254 (409)
142 PRK15438 erythronate-4-phospha 98.6 1.5E-07 3.2E-12 83.0 8.2 103 6-118 112-222 (378)
143 KOG0069 Glyoxylate/hydroxypyru 98.6 4.3E-07 9.3E-12 78.1 9.9 104 9-118 161-268 (336)
144 PRK08410 2-hydroxyacid dehydro 98.6 4.2E-07 9E-12 78.7 9.6 102 7-118 142-247 (311)
145 PRK13301 putative L-aspartate 98.5 4.6E-07 1E-11 75.4 8.8 81 10-93 2-84 (267)
146 PRK14188 bifunctional 5,10-met 98.5 2.8E-07 6.1E-12 78.5 7.5 72 7-104 155-229 (296)
147 PF01488 Shikimate_DH: Shikima 98.5 2.5E-07 5.4E-12 70.2 6.5 71 8-82 10-86 (135)
148 PF01113 DapB_N: Dihydrodipico 98.5 3.4E-07 7.4E-12 68.4 7.0 97 11-114 1-107 (124)
149 PRK06932 glycerate dehydrogena 98.5 6.8E-07 1.5E-11 77.5 8.8 101 7-118 144-248 (314)
150 PLN02306 hydroxypyruvate reduc 98.5 1.8E-06 3.8E-11 76.7 11.5 107 7-118 162-287 (386)
151 PRK00048 dihydrodipicolinate r 98.5 7.6E-07 1.7E-11 75.0 8.7 98 10-115 1-101 (257)
152 PRK06487 glycerate dehydrogena 98.5 1.2E-06 2.6E-11 76.0 9.8 100 7-118 145-248 (317)
153 PF00670 AdoHcyase_NAD: S-aden 98.4 3.1E-06 6.8E-11 65.3 10.4 88 7-104 20-109 (162)
154 PRK07340 ornithine cyclodeamin 98.4 2.3E-06 4.9E-11 73.9 10.7 87 9-104 124-216 (304)
155 cd05291 HicDH_like L-2-hydroxy 98.4 2.5E-06 5.4E-11 73.8 10.3 95 11-109 1-121 (306)
156 TIGR01763 MalateDH_bact malate 98.4 3.3E-06 7.2E-11 72.9 10.8 94 11-110 2-123 (305)
157 PRK06823 ornithine cyclodeamin 98.4 3.4E-06 7.5E-11 73.0 10.6 89 9-104 127-221 (315)
158 PRK06223 malate dehydrogenase; 98.4 3.2E-06 7E-11 73.2 10.3 95 10-110 2-124 (307)
159 PF00056 Ldh_1_N: lactate/mala 98.4 5.1E-06 1.1E-10 63.5 10.2 95 11-109 1-122 (141)
160 TIGR01921 DAP-DH diaminopimela 98.4 1.6E-06 3.5E-11 74.6 8.1 86 9-104 2-90 (324)
161 COG0373 HemA Glutamyl-tRNA red 98.4 2.8E-06 6.1E-11 75.2 9.8 94 9-107 177-276 (414)
162 PRK06407 ornithine cyclodeamin 98.4 3.4E-06 7.4E-11 72.6 10.0 89 9-104 116-211 (301)
163 PLN00203 glutamyl-tRNA reducta 98.4 3.1E-06 6.7E-11 77.8 10.3 96 8-107 264-371 (519)
164 PRK08618 ornithine cyclodeamin 98.3 3.8E-06 8.2E-11 73.3 10.4 88 9-104 126-220 (325)
165 PRK13303 L-aspartate dehydroge 98.3 2.2E-06 4.8E-11 72.5 8.3 89 10-104 1-91 (265)
166 PF01118 Semialdhyde_dh: Semia 98.3 1.1E-06 2.3E-11 65.4 5.7 90 12-108 1-100 (121)
167 PRK00045 hemA glutamyl-tRNA re 98.3 2E-06 4.3E-11 77.7 8.5 96 8-107 180-282 (423)
168 COG0569 TrkA K+ transport syst 98.3 6.9E-06 1.5E-10 67.8 10.9 91 11-106 1-102 (225)
169 TIGR02992 ectoine_eutC ectoine 98.3 5.6E-06 1.2E-10 72.2 10.5 88 9-104 128-223 (326)
170 PTZ00075 Adenosylhomocysteinas 98.3 4.2E-06 9.1E-11 75.4 9.8 92 7-107 251-343 (476)
171 PRK06046 alanine dehydrogenase 98.3 4.6E-06 1E-10 72.8 9.8 89 9-105 128-223 (326)
172 PRK07589 ornithine cyclodeamin 98.3 4.3E-06 9.3E-11 73.1 9.5 91 9-104 128-224 (346)
173 PF02423 OCD_Mu_crystall: Orni 98.3 1.7E-06 3.8E-11 75.0 7.0 92 9-105 127-224 (313)
174 cd05297 GH4_alpha_glucosidase_ 98.3 8.5E-06 1.8E-10 73.6 11.5 67 11-82 1-85 (423)
175 PRK14179 bifunctional 5,10-met 98.3 2.2E-06 4.8E-11 72.4 7.1 73 7-104 155-229 (284)
176 TIGR01035 hemA glutamyl-tRNA r 98.3 6.4E-06 1.4E-10 74.3 10.5 95 8-106 178-278 (417)
177 PRK08300 acetaldehyde dehydrog 98.3 6.9E-06 1.5E-10 70.1 10.1 93 7-106 1-102 (302)
178 COG2423 Predicted ornithine cy 98.3 6.2E-06 1.3E-10 71.3 9.9 89 9-104 129-224 (330)
179 cd05292 LDH_2 A subgroup of L- 98.3 6.1E-06 1.3E-10 71.4 9.9 67 11-80 1-76 (308)
180 PLN02494 adenosylhomocysteinas 98.3 5.5E-06 1.2E-10 74.5 9.7 99 8-116 252-355 (477)
181 TIGR00936 ahcY adenosylhomocys 98.3 9.3E-06 2E-10 72.3 11.0 99 8-115 193-295 (406)
182 PRK05476 S-adenosyl-L-homocyst 98.3 8.6E-06 1.9E-10 72.9 10.5 88 8-104 210-298 (425)
183 TIGR00507 aroE shikimate 5-deh 98.2 5.2E-06 1.1E-10 70.5 8.7 92 9-106 116-215 (270)
184 PTZ00117 malate dehydrogenase; 98.2 6.3E-06 1.4E-10 71.7 9.0 95 9-109 4-126 (319)
185 TIGR00036 dapB dihydrodipicoli 98.2 1.2E-05 2.5E-10 68.2 9.9 98 11-116 2-110 (266)
186 COG1748 LYS9 Saccharopine dehy 98.2 7.5E-06 1.6E-10 72.1 8.9 89 10-106 1-100 (389)
187 PRK13940 glutamyl-tRNA reducta 98.2 5.9E-06 1.3E-10 74.1 8.3 70 8-81 179-252 (414)
188 PRK00066 ldh L-lactate dehydro 98.2 1.8E-05 3.9E-10 68.7 11.1 96 10-109 6-126 (315)
189 cd00401 AdoHcyase S-adenosyl-L 98.2 1.8E-05 3.9E-10 70.7 10.5 89 8-105 200-289 (413)
190 PTZ00082 L-lactate dehydrogena 98.1 1.5E-05 3.3E-10 69.3 9.6 96 8-109 4-132 (321)
191 COG0673 MviM Predicted dehydro 98.1 1.2E-05 2.5E-10 70.6 9.0 90 8-102 1-95 (342)
192 PRK08291 ectoine utilization p 98.1 1.4E-05 3.1E-10 69.8 9.5 88 9-104 131-226 (330)
193 PRK04207 glyceraldehyde-3-phos 98.1 2.4E-05 5.1E-10 68.7 10.6 89 10-104 1-108 (341)
194 cd00650 LDH_MDH_like NAD-depen 98.1 2.2E-05 4.7E-10 66.5 9.8 95 13-109 1-123 (263)
195 PRK04148 hypothetical protein; 98.1 2.2E-05 4.8E-10 58.8 8.3 92 9-106 16-112 (134)
196 TIGR01723 hmd_TIGR 5,10-methen 98.1 0.00044 9.4E-09 57.5 16.3 162 58-224 126-299 (340)
197 cd05293 LDH_1 A subgroup of L- 98.1 2.9E-05 6.3E-10 67.2 9.9 95 10-109 3-124 (312)
198 PRK06199 ornithine cyclodeamin 98.1 2E-05 4.4E-10 69.9 9.1 91 9-103 154-257 (379)
199 PRK00436 argC N-acetyl-gamma-g 98.1 7.9E-05 1.7E-09 65.5 12.3 94 10-110 2-104 (343)
200 PRK09496 trkA potassium transp 98.0 3.6E-05 7.8E-10 70.2 10.5 76 11-91 1-85 (453)
201 PRK00961 H(2)-dependent methyl 98.0 0.00057 1.2E-08 56.7 16.1 162 58-224 128-301 (342)
202 TIGR00518 alaDH alanine dehydr 98.0 2.9E-05 6.3E-10 68.9 9.4 91 10-105 167-267 (370)
203 PRK00258 aroE shikimate 5-dehy 98.0 1.9E-05 4.2E-10 67.4 8.0 94 8-105 121-221 (278)
204 cd01078 NAD_bind_H4MPT_DH NADP 98.0 2E-05 4.3E-10 63.5 7.5 91 8-105 26-129 (194)
205 PRK02318 mannitol-1-phosphate 98.0 2E-05 4.4E-10 70.2 8.1 101 11-116 1-134 (381)
206 PRK15076 alpha-galactosidase; 98.0 8.9E-05 1.9E-09 67.0 12.1 69 11-80 2-84 (431)
207 cd01080 NAD_bind_m-THF_DH_Cycl 98.0 2.5E-05 5.5E-10 61.3 7.3 76 8-107 42-118 (168)
208 cd05191 NAD_bind_amino_acid_DH 98.0 4.6E-05 1E-09 52.9 7.9 64 8-104 21-85 (86)
209 PRK11579 putative oxidoreducta 98.0 0.00012 2.5E-09 64.6 11.9 83 10-102 4-92 (346)
210 TIGR03215 ac_ald_DH_ac acetald 97.9 7E-05 1.5E-09 63.7 9.6 87 11-104 2-94 (285)
211 cd05290 LDH_3 A subgroup of L- 97.9 9.1E-05 2E-09 64.0 10.1 95 12-110 1-124 (307)
212 PF02254 TrkA_N: TrkA-N domain 97.9 0.00021 4.6E-09 52.4 10.8 84 13-102 1-93 (116)
213 PRK12549 shikimate 5-dehydroge 97.9 5.2E-05 1.1E-09 64.8 8.1 93 9-105 126-227 (284)
214 cd05311 NAD_bind_2_malic_enz N 97.9 0.00013 2.9E-09 60.2 9.9 98 7-110 22-133 (226)
215 cd01339 LDH-like_MDH L-lactate 97.9 7.3E-05 1.6E-09 64.6 8.7 91 13-109 1-119 (300)
216 PLN02602 lactate dehydrogenase 97.9 0.00018 3.9E-09 63.2 10.8 95 11-110 38-159 (350)
217 TIGR01850 argC N-acetyl-gamma- 97.8 6.7E-05 1.4E-09 66.0 8.1 92 11-109 1-103 (346)
218 PRK09310 aroDE bifunctional 3- 97.8 7.5E-05 1.6E-09 68.5 8.4 70 8-83 330-402 (477)
219 PRK05442 malate dehydrogenase; 97.8 0.00013 2.7E-09 63.6 9.2 102 8-110 2-135 (326)
220 cd00300 LDH_like L-lactate deh 97.8 0.0001 2.2E-09 63.6 8.4 93 13-109 1-119 (300)
221 PTZ00325 malate dehydrogenase; 97.8 0.00014 3.1E-09 63.1 9.0 101 5-109 3-129 (321)
222 TIGR02354 thiF_fam2 thiamine b 97.8 0.00027 5.9E-09 57.2 10.0 35 9-47 20-54 (200)
223 TIGR01761 thiaz-red thiazoliny 97.8 0.00058 1.3E-08 59.8 12.5 98 9-116 2-107 (343)
224 PF13380 CoA_binding_2: CoA bi 97.7 0.00017 3.7E-09 53.1 7.6 94 11-117 1-98 (116)
225 PRK06718 precorrin-2 dehydroge 97.7 0.00025 5.5E-09 57.5 9.3 80 8-92 8-91 (202)
226 TIGR01809 Shik-DH-AROM shikima 97.7 0.00015 3.3E-09 61.9 8.2 70 9-82 124-201 (282)
227 cd05294 LDH-like_MDH_nadp A la 97.7 0.00015 3.3E-09 62.7 8.3 95 11-110 1-126 (309)
228 PF13460 NAD_binding_10: NADH( 97.7 0.00015 3.2E-09 57.6 7.6 61 13-80 1-69 (183)
229 TIGR01757 Malate-DH_plant mala 97.7 0.00035 7.7E-09 61.9 10.5 100 10-110 44-175 (387)
230 PRK03659 glutathione-regulated 97.7 0.00056 1.2E-08 64.7 12.4 88 10-103 400-496 (601)
231 PRK10206 putative oxidoreducta 97.7 0.00035 7.5E-09 61.5 10.2 76 10-90 1-83 (344)
232 PRK05671 aspartate-semialdehyd 97.7 0.00014 3.1E-09 63.5 7.6 95 8-108 2-100 (336)
233 PRK06719 precorrin-2 dehydroge 97.7 0.0002 4.3E-09 55.7 7.5 85 1-92 2-91 (157)
234 PRK05086 malate dehydrogenase; 97.7 0.00019 4.1E-09 62.3 8.1 95 11-109 1-122 (312)
235 COG2910 Putative NADH-flavin r 97.7 0.00018 3.9E-09 56.3 7.1 64 11-79 1-70 (211)
236 PLN02819 lysine-ketoglutarate 97.7 0.00041 8.9E-09 68.6 11.2 91 10-104 569-678 (1042)
237 cd01338 MDH_choloroplast_like 97.7 0.00024 5.3E-09 61.8 8.6 99 11-110 3-133 (322)
238 KOG2741 Dimeric dihydrodiol de 97.7 0.00067 1.5E-08 58.3 10.8 106 9-117 5-116 (351)
239 PRK09496 trkA potassium transp 97.6 0.00072 1.6E-08 61.7 11.9 91 9-104 230-330 (453)
240 PF02629 CoA_binding: CoA bind 97.6 0.00016 3.5E-09 51.3 5.9 77 10-93 3-84 (96)
241 TIGR01759 MalateDH-SF1 malate 97.6 0.00051 1.1E-08 59.7 10.1 101 9-110 2-134 (323)
242 PLN00112 malate dehydrogenase 97.6 0.0005 1.1E-08 62.0 10.3 99 9-110 99-231 (444)
243 PRK10669 putative cation:proto 97.6 0.00067 1.4E-08 63.7 11.7 88 11-104 418-514 (558)
244 PRK05472 redox-sensing transcr 97.6 6.3E-05 1.4E-09 61.6 4.2 79 9-92 83-167 (213)
245 PF01262 AlaDh_PNT_C: Alanine 97.6 0.00018 3.8E-09 56.7 6.1 95 6-105 16-139 (168)
246 PRK00683 murD UDP-N-acetylmura 97.6 0.00023 5E-09 64.4 7.6 67 9-80 2-68 (418)
247 PRK14874 aspartate-semialdehyd 97.5 0.00027 5.8E-09 61.9 7.3 94 10-108 1-97 (334)
248 PRK06349 homoserine dehydrogen 97.5 0.0002 4.3E-09 64.9 6.7 90 9-104 2-103 (426)
249 cd01337 MDH_glyoxysomal_mitoch 97.5 0.00051 1.1E-08 59.4 8.8 96 11-110 1-122 (310)
250 PRK09424 pntA NAD(P) transhydr 97.5 0.00095 2.1E-08 61.4 10.8 91 10-105 165-285 (509)
251 TIGR02356 adenyl_thiF thiazole 97.5 0.00079 1.7E-08 54.6 9.3 35 9-47 20-54 (202)
252 cd00704 MDH Malate dehydrogena 97.5 0.0004 8.6E-09 60.5 8.0 99 11-110 1-131 (323)
253 PRK03562 glutathione-regulated 97.5 0.00067 1.4E-08 64.4 10.1 87 10-102 400-495 (621)
254 TIGR00561 pntA NAD(P) transhyd 97.5 0.00087 1.9E-08 61.5 10.3 92 10-106 164-285 (511)
255 PLN02968 Probable N-acetyl-gam 97.5 0.00046 1E-08 61.4 8.2 93 8-108 36-137 (381)
256 PRK12475 thiamine/molybdopteri 97.5 0.0008 1.7E-08 59.0 9.4 80 9-92 23-137 (338)
257 PRK08664 aspartate-semialdehyd 97.5 0.00058 1.3E-08 60.2 8.5 92 9-107 2-109 (349)
258 KOG0068 D-3-phosphoglycerate d 97.5 0.00044 9.5E-09 59.1 7.2 105 6-118 142-251 (406)
259 COG0039 Mdh Malate/lactate deh 97.5 0.00077 1.7E-08 57.9 8.7 96 11-110 1-123 (313)
260 PRK14175 bifunctional 5,10-met 97.5 0.00059 1.3E-08 58.0 7.9 74 7-105 155-230 (286)
261 COG0002 ArgC Acetylglutamate s 97.4 0.00049 1.1E-08 59.3 7.3 95 9-110 1-106 (349)
262 cd05197 GH4_glycoside_hydrolas 97.4 0.0028 6.2E-08 57.2 12.5 70 11-81 1-84 (425)
263 TIGR01771 L-LDH-NAD L-lactate 97.4 0.00073 1.6E-08 58.2 8.3 91 15-109 1-117 (299)
264 PLN02383 aspartate semialdehyd 97.4 0.00074 1.6E-08 59.3 8.3 96 9-108 6-103 (344)
265 cd05298 GH4_GlvA_pagL_like Gly 97.4 0.0032 7E-08 57.0 12.6 70 11-81 1-84 (437)
266 cd01487 E1_ThiF_like E1_ThiF_l 97.4 0.00098 2.1E-08 52.7 8.2 33 12-48 1-33 (174)
267 PF03435 Saccharop_dh: Sacchar 97.3 0.00066 1.4E-08 60.7 7.5 85 13-103 1-96 (386)
268 PRK08040 putative semialdehyde 97.3 0.00055 1.2E-08 59.8 6.6 96 8-108 2-100 (336)
269 COG0136 Asd Aspartate-semialde 97.3 0.002 4.3E-08 55.6 9.7 139 10-162 1-150 (334)
270 TIGR01546 GAPDH-II_archae glyc 97.3 0.0013 2.9E-08 57.1 8.6 67 13-82 1-86 (333)
271 PRK11863 N-acetyl-gamma-glutam 97.3 0.00084 1.8E-08 57.9 7.1 83 9-108 1-84 (313)
272 PRK00676 hemA glutamyl-tRNA re 97.3 0.001 2.2E-08 57.8 7.6 62 8-78 172-233 (338)
273 PRK06728 aspartate-semialdehyd 97.3 0.0011 2.5E-08 57.9 7.8 96 10-108 5-102 (347)
274 PRK14189 bifunctional 5,10-met 97.3 0.001 2.2E-08 56.5 7.3 74 7-104 155-229 (285)
275 PLN00106 malate dehydrogenase 97.3 0.0019 4.2E-08 56.1 9.1 95 11-109 19-139 (323)
276 TIGR01758 MDH_euk_cyt malate d 97.3 0.0017 3.6E-08 56.6 8.7 98 12-110 1-130 (324)
277 COG1064 AdhP Zn-dependent alco 97.3 0.0022 4.8E-08 55.7 9.3 86 10-104 167-258 (339)
278 TIGR01772 MDH_euk_gproteo mala 97.2 0.0013 2.8E-08 56.9 7.9 95 12-110 1-121 (312)
279 PF05368 NmrA: NmrA-like famil 97.2 0.0013 2.9E-08 54.3 7.5 63 13-80 1-73 (233)
280 COG0686 Ald Alanine dehydrogen 97.2 0.0011 2.4E-08 56.2 6.8 91 10-105 168-268 (371)
281 PRK10792 bifunctional 5,10-met 97.2 0.0016 3.4E-08 55.3 7.8 74 6-104 155-230 (285)
282 CHL00194 ycf39 Ycf39; Provisio 97.2 0.0012 2.6E-08 57.3 7.5 65 11-80 1-73 (317)
283 PF10100 DUF2338: Uncharacteri 97.2 0.023 5E-07 50.1 14.9 155 10-168 1-200 (429)
284 PRK06270 homoserine dehydrogen 97.2 0.002 4.3E-08 56.7 8.5 92 10-104 2-124 (341)
285 COG2344 AT-rich DNA-binding pr 97.2 0.00054 1.2E-08 53.7 4.3 79 9-93 83-168 (211)
286 PRK14982 acyl-ACP reductase; P 97.2 0.0013 2.8E-08 57.4 7.1 90 8-106 153-247 (340)
287 COG0169 AroE Shikimate 5-dehyd 97.2 0.0017 3.6E-08 55.3 7.6 91 9-105 125-226 (283)
288 PF00899 ThiF: ThiF family; I 97.2 0.0029 6.4E-08 47.7 8.3 33 10-46 2-34 (135)
289 PRK14192 bifunctional 5,10-met 97.2 0.0027 5.8E-08 54.2 8.8 74 7-104 156-230 (283)
290 cd01336 MDH_cytoplasmic_cytoso 97.2 0.0024 5.2E-08 55.7 8.6 98 11-109 3-132 (325)
291 PRK08644 thiamine biosynthesis 97.2 0.0041 8.8E-08 50.9 9.5 35 9-47 27-61 (212)
292 PF13241 NAD_binding_7: Putati 97.1 0.0023 5.1E-08 45.9 7.2 85 8-104 5-90 (103)
293 cd01076 NAD_bind_1_Glu_DH NAD( 97.1 0.0027 5.9E-08 52.4 8.3 89 7-106 28-137 (227)
294 cd01483 E1_enzyme_family Super 97.1 0.0044 9.5E-08 47.2 8.9 32 12-47 1-32 (143)
295 PF10728 DUF2520: Domain of un 97.1 0.012 2.5E-07 44.3 10.7 103 147-250 9-115 (132)
296 cd05296 GH4_P_beta_glucosidase 97.1 0.011 2.3E-07 53.4 12.3 68 11-79 1-83 (419)
297 TIGR01470 cysG_Nterm siroheme 97.1 0.0059 1.3E-07 49.6 9.7 89 9-105 8-100 (205)
298 PF03720 UDPG_MGDP_dh_C: UDP-g 97.1 0.0025 5.4E-08 46.1 6.6 81 21-106 18-102 (106)
299 TIGR01296 asd_B aspartate-semi 97.1 0.0013 2.9E-08 57.7 6.1 90 12-106 1-93 (339)
300 PRK00421 murC UDP-N-acetylmura 97.0 0.0034 7.4E-08 57.6 8.7 70 5-79 2-74 (461)
301 PRK01390 murD UDP-N-acetylmura 97.0 0.0033 7.2E-08 57.6 8.5 65 9-78 8-72 (460)
302 TIGR02717 AcCoA-syn-alpha acet 97.0 0.0043 9.3E-08 56.6 9.1 92 8-109 5-100 (447)
303 cd05211 NAD_bind_Glu_Leu_Phe_V 97.0 0.0036 7.8E-08 51.3 7.8 91 7-106 20-128 (217)
304 PRK00141 murD UDP-N-acetylmura 97.0 0.0035 7.5E-08 57.7 8.5 69 9-82 14-87 (473)
305 COG0289 DapB Dihydrodipicolina 97.0 0.0069 1.5E-07 50.4 9.1 100 9-115 1-110 (266)
306 PF03447 NAD_binding_3: Homose 97.0 0.002 4.4E-08 47.3 5.5 81 17-105 1-90 (117)
307 PRK07688 thiamine/molybdopteri 96.9 0.0076 1.6E-07 52.9 9.8 80 9-92 23-137 (339)
308 PRK12548 shikimate 5-dehydroge 96.9 0.0033 7.2E-08 54.0 7.3 70 9-82 125-210 (289)
309 PRK06598 aspartate-semialdehyd 96.9 0.0031 6.6E-08 55.6 7.1 92 11-107 2-100 (369)
310 PF02882 THF_DHG_CYH_C: Tetrah 96.9 0.0029 6.2E-08 49.2 6.0 73 7-104 33-107 (160)
311 PRK14176 bifunctional 5,10-met 96.9 0.0052 1.1E-07 52.2 8.0 73 7-104 161-235 (287)
312 cd01492 Aos1_SUMO Ubiquitin ac 96.9 0.0063 1.4E-07 49.2 8.2 34 10-47 21-54 (197)
313 TIGR00978 asd_EA aspartate-sem 96.9 0.0046 1E-07 54.4 7.9 91 11-107 1-106 (341)
314 PRK03369 murD UDP-N-acetylmura 96.8 0.0055 1.2E-07 56.6 8.6 65 10-79 12-78 (488)
315 PRK14106 murD UDP-N-acetylmura 96.8 0.0064 1.4E-07 55.5 9.0 67 8-79 3-76 (450)
316 TIGR01851 argC_other N-acetyl- 96.8 0.0045 9.8E-08 53.2 7.4 80 11-107 2-82 (310)
317 PRK12749 quinate/shikimate deh 96.8 0.0064 1.4E-07 52.1 8.3 91 9-105 123-233 (288)
318 PRK14191 bifunctional 5,10-met 96.8 0.0053 1.2E-07 52.1 7.6 73 7-104 154-228 (285)
319 cd00757 ThiF_MoeB_HesA_family 96.8 0.007 1.5E-07 50.1 8.3 34 9-46 20-53 (228)
320 PRK14027 quinate/shikimate deh 96.8 0.0062 1.4E-07 52.0 8.1 69 9-81 126-204 (283)
321 cd01486 Apg7 Apg7 is an E1-lik 96.8 0.0076 1.7E-07 51.5 8.3 29 12-43 1-29 (307)
322 PRK01710 murD UDP-N-acetylmura 96.8 0.0062 1.4E-07 55.8 8.4 66 9-79 13-85 (458)
323 cd05212 NAD_bind_m-THF_DH_Cycl 96.8 0.011 2.5E-07 44.8 8.3 73 8-104 26-99 (140)
324 COG4074 Mth H2-forming N5,N10- 96.7 0.16 3.4E-06 41.2 14.9 162 58-222 126-297 (343)
325 PRK12550 shikimate 5-dehydroge 96.7 0.0056 1.2E-07 52.0 7.3 66 11-82 123-189 (272)
326 KOG2666 UDP-glucose/GDP-mannos 96.7 0.26 5.6E-06 42.3 16.5 105 10-118 1-142 (481)
327 PRK05690 molybdopterin biosynt 96.7 0.011 2.4E-07 49.5 8.5 34 9-46 31-64 (245)
328 TIGR02355 moeB molybdopterin s 96.7 0.013 2.7E-07 48.9 8.8 35 10-48 24-58 (240)
329 PRK06153 hypothetical protein; 96.7 0.01 2.3E-07 52.4 8.5 93 10-108 176-301 (393)
330 PRK08762 molybdopterin biosynt 96.7 0.012 2.5E-07 52.6 9.0 35 9-47 134-168 (376)
331 COG1648 CysG Siroheme synthase 96.6 0.036 7.9E-07 45.1 10.9 78 9-92 11-93 (210)
332 PF02056 Glyco_hydro_4: Family 96.6 0.004 8.6E-08 49.4 5.1 71 12-83 1-85 (183)
333 PRK14183 bifunctional 5,10-met 96.6 0.0093 2E-07 50.5 7.6 73 7-104 154-228 (281)
334 PRK05597 molybdopterin biosynt 96.6 0.015 3.3E-07 51.4 9.3 80 9-92 27-139 (355)
335 PRK08328 hypothetical protein; 96.6 0.018 3.9E-07 47.7 9.2 41 10-54 27-67 (231)
336 PRK02472 murD UDP-N-acetylmura 96.6 0.011 2.4E-07 54.0 8.5 66 9-79 4-76 (447)
337 PF14833 NAD_binding_11: NAD-b 96.6 0.026 5.6E-07 41.7 9.0 80 187-270 21-107 (122)
338 COG1063 Tdh Threonine dehydrog 96.6 0.022 4.8E-07 50.3 10.1 84 12-102 171-266 (350)
339 PRK05600 thiamine biosynthesis 96.5 0.018 4E-07 51.1 9.3 79 10-92 41-152 (370)
340 cd01485 E1-1_like Ubiquitin ac 96.5 0.019 4.1E-07 46.4 8.5 34 10-47 19-52 (198)
341 PRK01438 murD UDP-N-acetylmura 96.5 0.012 2.7E-07 54.1 8.3 68 7-79 13-86 (480)
342 PRK02006 murD UDP-N-acetylmura 96.5 0.012 2.6E-07 54.5 8.1 68 9-81 6-81 (498)
343 PRK14178 bifunctional 5,10-met 96.4 0.016 3.5E-07 49.1 7.4 75 6-105 148-224 (279)
344 COG0300 DltE Short-chain dehyd 96.3 0.044 9.4E-07 46.2 9.9 86 6-104 2-91 (265)
345 PRK14173 bifunctional 5,10-met 96.3 0.019 4.2E-07 48.8 7.7 73 7-104 152-226 (287)
346 KOG1495 Lactate dehydrogenase 96.3 0.065 1.4E-06 44.8 10.2 100 9-112 19-144 (332)
347 COG0026 PurK Phosphoribosylami 96.3 0.0074 1.6E-07 52.6 5.0 73 10-87 1-81 (375)
348 PRK14172 bifunctional 5,10-met 96.2 0.022 4.8E-07 48.3 7.7 73 7-104 155-229 (278)
349 TIGR01745 asd_gamma aspartate- 96.2 0.011 2.3E-07 52.1 6.0 94 11-107 1-99 (366)
350 PRK14186 bifunctional 5,10-met 96.2 0.022 4.8E-07 48.7 7.7 73 7-104 155-229 (297)
351 PRK12809 putative oxidoreducta 96.2 0.022 4.9E-07 54.4 8.5 67 9-80 309-404 (639)
352 PLN02353 probable UDP-glucose 96.2 0.042 9.1E-07 50.4 9.9 103 8-115 322-457 (473)
353 PRK14169 bifunctional 5,10-met 96.2 0.026 5.6E-07 48.0 7.8 73 7-104 153-227 (282)
354 KOG1502 Flavonol reductase/cin 96.2 0.013 2.9E-07 50.5 6.1 66 9-79 5-86 (327)
355 PRK14177 bifunctional 5,10-met 96.2 0.026 5.5E-07 48.0 7.7 73 7-104 156-230 (284)
356 cd01079 NAD_bind_m-THF_DH NAD 96.2 0.033 7.1E-07 44.5 7.8 88 7-105 59-156 (197)
357 PRK08374 homoserine dehydrogen 96.1 0.011 2.3E-07 51.9 5.6 92 10-107 2-124 (336)
358 PLN02520 bifunctional 3-dehydr 96.1 0.018 3.8E-07 53.8 7.3 44 8-56 377-420 (529)
359 cd08230 glucose_DH Glucose deh 96.1 0.055 1.2E-06 47.7 10.2 87 9-104 172-268 (355)
360 PRK14166 bifunctional 5,10-met 96.1 0.026 5.7E-07 47.9 7.6 73 7-104 154-228 (282)
361 TIGR01082 murC UDP-N-acetylmur 96.1 0.021 4.4E-07 52.3 7.6 63 12-79 1-66 (448)
362 PRK05678 succinyl-CoA syntheta 96.1 0.044 9.6E-07 46.9 9.0 91 9-111 7-103 (291)
363 PRK12769 putative oxidoreducta 96.1 0.025 5.5E-07 54.2 8.4 66 9-79 326-420 (654)
364 PRK14573 bifunctional D-alanyl 96.1 0.024 5.3E-07 55.7 8.4 67 7-78 1-70 (809)
365 PRK14170 bifunctional 5,10-met 96.1 0.028 6E-07 47.8 7.6 73 7-104 154-228 (284)
366 PRK14171 bifunctional 5,10-met 96.1 0.029 6.2E-07 47.8 7.7 73 7-104 156-230 (288)
367 PLN00141 Tic62-NAD(P)-related 96.1 0.025 5.4E-07 47.3 7.4 67 9-80 16-94 (251)
368 PRK07411 hypothetical protein; 96.1 0.036 7.8E-07 49.7 8.7 79 10-92 38-149 (390)
369 PLN02516 methylenetetrahydrofo 96.1 0.031 6.6E-07 47.9 7.8 73 7-104 164-238 (299)
370 PRK14187 bifunctional 5,10-met 96.0 0.031 6.8E-07 47.7 7.7 73 7-104 157-231 (294)
371 PLN03075 nicotianamine synthas 96.0 0.069 1.5E-06 45.8 9.7 93 9-104 123-232 (296)
372 PLN02775 Probable dihydrodipic 96.0 0.068 1.5E-06 45.4 9.6 108 3-117 4-123 (286)
373 cd01484 E1-2_like Ubiquitin ac 96.0 0.087 1.9E-06 43.7 10.0 87 12-104 1-122 (234)
374 PRK05653 fabG 3-ketoacyl-(acyl 96.0 0.049 1.1E-06 44.8 8.7 84 9-106 4-91 (246)
375 PRK14180 bifunctional 5,10-met 96.0 0.033 7.2E-07 47.3 7.6 73 7-104 155-229 (282)
376 TIGR01381 E1_like_apg7 E1-like 96.0 0.036 7.8E-07 52.1 8.4 31 10-43 338-368 (664)
377 PRK14193 bifunctional 5,10-met 96.0 0.034 7.5E-07 47.2 7.5 73 7-104 155-231 (284)
378 PRK14190 bifunctional 5,10-met 96.0 0.034 7.3E-07 47.3 7.5 74 7-104 155-229 (284)
379 TIGR01318 gltD_gamma_fam gluta 95.9 0.045 9.9E-07 50.3 9.0 66 9-79 140-234 (467)
380 PRK12429 3-hydroxybutyrate deh 95.9 0.045 9.7E-07 45.6 8.3 43 8-55 2-45 (258)
381 cd00755 YgdL_like Family of ac 95.9 0.078 1.7E-06 43.9 9.2 35 9-47 10-44 (231)
382 PRK15116 sulfur acceptor prote 95.9 0.11 2.3E-06 44.1 10.1 35 9-47 29-63 (268)
383 PRK06180 short chain dehydroge 95.8 0.075 1.6E-06 45.1 9.4 44 8-56 2-46 (277)
384 PF03059 NAS: Nicotianamine sy 95.8 0.066 1.4E-06 45.4 8.7 89 11-102 122-227 (276)
385 PRK07878 molybdopterin biosynt 95.8 0.051 1.1E-06 48.8 8.5 79 10-92 42-153 (392)
386 TIGR01019 sucCoAalpha succinyl 95.8 0.069 1.5E-06 45.6 8.9 93 9-111 5-101 (286)
387 PLN02477 glutamate dehydrogena 95.8 0.12 2.6E-06 46.4 10.8 111 7-129 203-334 (410)
388 PRK14182 bifunctional 5,10-met 95.8 0.048 1E-06 46.3 7.9 73 7-104 154-228 (282)
389 PF00185 OTCace: Aspartate/orn 95.8 0.19 4.2E-06 39.0 10.8 67 10-81 2-83 (158)
390 PRK10637 cysG siroheme synthas 95.8 0.082 1.8E-06 48.5 10.0 83 1-88 1-89 (457)
391 PRK03803 murD UDP-N-acetylmura 95.8 0.04 8.6E-07 50.4 7.9 66 9-79 5-76 (448)
392 PRK06392 homoserine dehydrogen 95.8 0.016 3.5E-07 50.5 5.0 93 11-106 1-117 (326)
393 PRK09242 tropinone reductase; 95.8 0.1 2.2E-06 43.6 9.8 91 4-106 3-97 (257)
394 PLN02616 tetrahydrofolate dehy 95.8 0.04 8.6E-07 48.2 7.3 73 7-104 228-302 (364)
395 PRK09186 flagellin modificatio 95.8 0.091 2E-06 43.7 9.5 86 8-105 2-91 (256)
396 PLN03209 translocon at the inn 95.8 0.032 7E-07 52.0 7.2 42 9-55 79-121 (576)
397 PRK05562 precorrin-2 dehydroge 95.8 0.2 4.3E-06 41.2 11.0 78 10-92 25-106 (223)
398 PRK14181 bifunctional 5,10-met 95.7 0.052 1.1E-06 46.2 7.7 73 7-104 150-228 (287)
399 COG0190 FolD 5,10-methylene-te 95.7 0.041 8.8E-07 46.4 6.8 72 8-104 154-227 (283)
400 PRK12814 putative NADPH-depend 95.7 0.048 1E-06 52.3 8.3 68 7-79 190-286 (652)
401 TIGR01532 E4PD_g-proteo D-eryt 95.6 0.079 1.7E-06 46.2 8.7 93 12-107 1-122 (325)
402 PRK06182 short chain dehydroge 95.6 0.11 2.4E-06 43.8 9.5 43 9-56 2-45 (273)
403 PRK08223 hypothetical protein; 95.6 0.12 2.7E-06 44.0 9.6 34 10-47 27-60 (287)
404 TIGR03366 HpnZ_proposed putati 95.6 0.15 3.3E-06 43.3 10.3 87 9-104 120-217 (280)
405 COG4408 Uncharacterized protei 95.6 0.58 1.3E-05 40.4 13.3 153 8-164 2-197 (431)
406 PLN02897 tetrahydrofolate dehy 95.6 0.049 1.1E-06 47.4 7.2 73 7-104 211-285 (345)
407 cd08237 ribitol-5-phosphate_DH 95.6 0.13 2.8E-06 45.2 10.1 87 10-103 164-254 (341)
408 PRK04308 murD UDP-N-acetylmura 95.6 0.054 1.2E-06 49.4 8.0 69 9-82 4-80 (445)
409 COG0771 MurD UDP-N-acetylmuram 95.6 0.028 6.1E-07 50.9 5.9 69 9-82 6-82 (448)
410 PRK05717 oxidoreductase; Valid 95.6 0.17 3.7E-06 42.2 10.4 49 1-54 1-50 (255)
411 TIGR03855 NAD_NadX aspartate d 95.6 0.062 1.4E-06 44.4 7.5 53 40-93 5-59 (229)
412 PRK14168 bifunctional 5,10-met 95.5 0.056 1.2E-06 46.3 7.3 73 7-104 158-236 (297)
413 PRK12826 3-ketoacyl-(acyl-carr 95.5 0.081 1.8E-06 43.8 8.3 43 7-54 3-46 (251)
414 cd01491 Ube1_repeat1 Ubiquitin 95.5 0.13 2.9E-06 43.9 9.5 79 9-91 18-125 (286)
415 PRK11908 NAD-dependent epimera 95.5 0.033 7.1E-07 49.0 6.1 64 10-78 1-75 (347)
416 PRK12771 putative glutamate sy 95.5 0.054 1.2E-06 51.0 7.9 69 7-80 134-231 (564)
417 PLN02427 UDP-apiose/xylose syn 95.5 0.031 6.8E-07 49.9 6.1 69 6-79 10-94 (386)
418 COG5322 Predicted dehydrogenas 95.5 0.021 4.5E-07 47.6 4.3 93 7-110 164-264 (351)
419 PRK10538 malonic semialdehyde 95.4 0.13 2.8E-06 42.7 9.2 40 11-55 1-41 (248)
420 PRK14167 bifunctional 5,10-met 95.4 0.071 1.5E-06 45.7 7.5 73 7-104 154-232 (297)
421 TIGR03649 ergot_EASG ergot alk 95.4 0.053 1.2E-06 46.1 7.0 62 12-81 1-77 (285)
422 PRK14185 bifunctional 5,10-met 95.4 0.074 1.6E-06 45.4 7.6 77 7-104 154-232 (293)
423 PRK07454 short chain dehydroge 95.4 0.11 2.4E-06 42.9 8.6 83 9-105 5-91 (241)
424 PRK05875 short chain dehydroge 95.4 0.19 4E-06 42.5 10.1 43 8-55 5-48 (276)
425 TIGR03466 HpnA hopanoid-associ 95.4 0.024 5.1E-07 49.1 4.7 64 11-79 1-72 (328)
426 TIGR01087 murD UDP-N-acetylmur 95.4 0.04 8.7E-07 50.1 6.3 63 12-79 1-70 (433)
427 PRK07326 short chain dehydroge 95.4 0.095 2.1E-06 43.1 8.1 41 10-55 6-47 (237)
428 COG0702 Predicted nucleoside-d 95.4 0.13 2.9E-06 43.1 9.1 64 11-80 1-72 (275)
429 COG1486 CelF Alpha-galactosida 95.4 0.068 1.5E-06 48.0 7.4 74 8-82 1-88 (442)
430 COG1090 Predicted nucleoside-d 95.4 0.021 4.6E-07 47.9 4.0 55 17-76 6-61 (297)
431 PRK08955 glyceraldehyde-3-phos 95.3 0.18 3.9E-06 44.1 9.8 91 11-107 3-121 (334)
432 PRK07523 gluconate 5-dehydroge 95.3 0.12 2.5E-06 43.2 8.6 85 8-106 8-96 (255)
433 PRK07231 fabG 3-ketoacyl-(acyl 95.3 0.14 2.9E-06 42.4 8.9 82 9-105 4-89 (251)
434 PRK09414 glutamate dehydrogena 95.3 0.28 6.1E-06 44.6 11.3 115 7-129 229-367 (445)
435 PRK05866 short chain dehydroge 95.3 0.13 2.7E-06 44.2 8.8 82 10-105 40-125 (293)
436 PLN02172 flavin-containing mon 95.3 0.031 6.6E-07 51.3 5.2 41 1-46 1-41 (461)
437 PRK12939 short chain dehydroge 95.2 0.13 2.9E-06 42.5 8.6 84 9-106 6-93 (250)
438 PRK02705 murD UDP-N-acetylmura 95.2 0.065 1.4E-06 49.1 7.2 63 12-79 2-76 (459)
439 PRK08163 salicylate hydroxylas 95.2 0.028 6E-07 50.3 4.7 37 8-49 2-38 (396)
440 PRK07825 short chain dehydroge 95.2 0.16 3.4E-06 42.8 9.1 42 9-55 4-46 (273)
441 KOG1370 S-adenosylhomocysteine 95.2 1.1 2.4E-05 38.4 13.5 82 12-103 215-299 (434)
442 PRK09880 L-idonate 5-dehydroge 95.2 0.22 4.9E-06 43.6 10.3 87 10-104 170-265 (343)
443 PRK12828 short chain dehydroge 95.2 0.27 5.7E-06 40.3 10.2 83 9-105 6-90 (239)
444 COG0460 ThrA Homoserine dehydr 95.2 0.047 1E-06 47.4 5.7 95 8-104 1-112 (333)
445 PRK07775 short chain dehydroge 95.1 0.16 3.5E-06 43.0 8.9 49 1-54 1-50 (274)
446 PRK05993 short chain dehydroge 95.1 0.082 1.8E-06 44.8 7.1 44 10-58 4-48 (277)
447 PRK06901 aspartate-semialdehyd 95.1 0.032 7E-07 48.1 4.5 92 9-107 2-97 (322)
448 KOG0022 Alcohol dehydrogenase, 95.1 0.19 4.2E-06 43.1 8.9 54 9-66 192-245 (375)
449 TIGR02130 dapB_plant dihydrodi 95.1 0.18 4E-06 42.6 8.9 99 12-117 2-112 (275)
450 KOG3007 Mu-crystallin [Amino a 95.1 0.066 1.4E-06 44.6 6.0 92 12-110 140-241 (333)
451 PRK13394 3-hydroxybutyrate deh 95.1 0.11 2.5E-06 43.2 7.8 84 9-106 6-93 (262)
452 cd01489 Uba2_SUMO Ubiquitin ac 95.1 0.14 3.1E-06 44.3 8.4 86 12-103 1-120 (312)
453 TIGR02822 adh_fam_2 zinc-bindi 95.1 0.24 5.3E-06 43.2 10.1 87 10-104 166-253 (329)
454 PRK12829 short chain dehydroge 95.1 0.14 3E-06 42.8 8.3 83 8-106 9-95 (264)
455 PLN02896 cinnamyl-alcohol dehy 95.1 0.085 1.8E-06 46.5 7.2 70 5-79 5-87 (353)
456 cd00762 NAD_bind_malic_enz NAD 95.0 0.22 4.8E-06 41.6 9.1 100 7-109 22-145 (254)
457 PRK07062 short chain dehydroge 95.0 0.25 5.4E-06 41.4 9.7 86 8-105 6-95 (265)
458 PRK06124 gluconate 5-dehydroge 95.0 0.19 4.2E-06 41.8 8.9 41 10-55 11-52 (256)
459 PRK07814 short chain dehydroge 95.0 0.21 4.5E-06 41.9 9.1 85 8-106 8-96 (263)
460 PRK08267 short chain dehydroge 94.9 0.27 5.9E-06 41.0 9.7 41 11-56 2-43 (260)
461 PRK07890 short chain dehydroge 94.9 0.16 3.4E-06 42.3 8.3 83 9-105 4-90 (258)
462 PRK08017 oxidoreductase; Provi 94.9 0.091 2E-06 43.7 6.8 42 11-57 3-45 (256)
463 PRK03806 murD UDP-N-acetylmura 94.9 0.12 2.7E-06 47.0 8.1 64 10-79 6-73 (438)
464 smart00846 Gp_dh_N Glyceraldeh 94.9 0.082 1.8E-06 40.6 5.9 42 11-56 1-44 (149)
465 PRK06179 short chain dehydroge 94.9 0.15 3.2E-06 42.9 8.1 78 8-105 2-81 (270)
466 PRK12810 gltD glutamate syntha 94.9 0.17 3.6E-06 46.6 8.9 35 8-47 141-175 (471)
467 PRK08340 glucose-1-dehydrogena 94.9 0.25 5.4E-06 41.3 9.4 80 11-105 1-84 (259)
468 cd05312 NAD_bind_1_malic_enz N 94.9 0.42 9.1E-06 40.6 10.5 101 6-109 21-144 (279)
469 PRK06138 short chain dehydroge 94.9 0.36 7.8E-06 39.9 10.3 83 9-106 4-90 (252)
470 PRK06914 short chain dehydroge 94.9 0.21 4.5E-06 42.3 8.9 42 9-55 2-44 (280)
471 PRK14184 bifunctional 5,10-met 94.8 0.13 2.7E-06 43.9 7.3 73 7-104 154-232 (286)
472 PRK06057 short chain dehydroge 94.8 0.32 6.9E-06 40.6 9.9 43 8-55 5-48 (255)
473 PRK08213 gluconate 5-dehydroge 94.8 0.18 3.9E-06 42.1 8.3 84 9-106 11-98 (259)
474 PRK03815 murD UDP-N-acetylmura 94.8 0.071 1.5E-06 48.0 6.1 63 11-82 1-67 (401)
475 PRK10537 voltage-gated potassi 94.8 0.4 8.6E-06 43.0 10.7 69 10-85 240-316 (393)
476 PRK06019 phosphoribosylaminoim 94.8 0.068 1.5E-06 47.6 5.9 63 10-77 2-69 (372)
477 COG1832 Predicted CoA-binding 94.8 0.37 8E-06 36.1 8.7 97 10-117 16-116 (140)
478 PRK05854 short chain dehydroge 94.8 0.28 6.1E-06 42.5 9.6 84 9-104 13-100 (313)
479 TIGR03325 BphB_TodD cis-2,3-di 94.7 0.32 6.9E-06 40.7 9.7 43 9-56 4-47 (262)
480 PRK08251 short chain dehydroge 94.7 0.3 6.4E-06 40.4 9.4 41 10-55 2-43 (248)
481 COG0057 GapA Glyceraldehyde-3- 94.7 0.29 6.2E-06 42.3 9.2 43 10-56 1-46 (335)
482 PRK14174 bifunctional 5,10-met 94.7 0.15 3.2E-06 43.8 7.5 74 7-104 156-234 (295)
483 PRK05867 short chain dehydroge 94.7 0.19 4.1E-06 41.9 8.2 83 9-105 8-94 (253)
484 PLN02657 3,8-divinyl protochlo 94.7 0.03 6.5E-07 50.2 3.5 40 6-50 56-96 (390)
485 PRK07831 short chain dehydroge 94.7 0.28 6E-06 41.1 9.2 41 9-54 16-58 (262)
486 PRK14030 glutamate dehydrogena 94.7 0.48 1E-05 43.0 11.1 113 7-128 225-366 (445)
487 COG0499 SAM1 S-adenosylhomocys 94.7 0.11 2.4E-06 45.2 6.5 68 10-83 209-276 (420)
488 PRK06949 short chain dehydroge 94.7 0.28 6.1E-06 40.8 9.1 42 9-55 8-50 (258)
489 PRK07109 short chain dehydroge 94.6 0.24 5.3E-06 43.3 9.0 84 8-105 6-93 (334)
490 PRK04690 murD UDP-N-acetylmura 94.6 0.14 3.1E-06 47.0 7.8 69 9-82 7-82 (468)
491 PRK12409 D-amino acid dehydrog 94.6 0.049 1.1E-06 49.1 4.6 33 11-48 2-34 (410)
492 PRK08945 putative oxoacyl-(acy 94.6 0.27 5.8E-06 40.8 8.8 44 7-55 9-53 (247)
493 PRK04663 murD UDP-N-acetylmura 94.6 0.14 3.1E-06 46.6 7.7 64 10-79 7-76 (438)
494 cd05313 NAD_bind_2_Glu_DH NAD( 94.6 0.3 6.5E-06 41.0 8.9 114 7-129 35-177 (254)
495 PRK06500 short chain dehydroge 94.6 0.4 8.8E-06 39.6 9.8 42 9-55 5-47 (249)
496 COG0773 MurC UDP-N-acetylmuram 94.6 0.76 1.6E-05 41.7 11.9 64 11-79 8-74 (459)
497 KOG1683 Hydroxyacyl-CoA dehydr 94.6 0.16 3.4E-06 44.4 7.3 136 21-163 1-163 (380)
498 TIGR03736 PRTRC_ThiF PRTRC sys 94.6 0.33 7.1E-06 40.5 9.0 25 9-33 10-34 (244)
499 PRK08265 short chain dehydroge 94.6 0.41 8.8E-06 40.1 9.9 80 9-105 5-88 (261)
500 PRK06197 short chain dehydroge 94.6 0.35 7.6E-06 41.6 9.7 84 10-105 16-103 (306)
No 1
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-53 Score=348.81 Aligned_cols=261 Identities=49% Similarity=0.801 Sum_probs=246.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
++||||||+|+||++|+.+|+++|.+++.+|++. +|++++.+.+.+ +|+..+.++.+++.++|+||+||+|+++++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~-~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVT-NRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEe-CCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHH
Confidence 4789999999999999999999995577799999 999999875655 77776677788899999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 168 (272)
.++.+ +.++++|||+.+|++.+.+++++++.+++|+|||+|..++.|.+.++.+...++++.+.+.++|+.+|++++++
T Consensus 80 ~~l~~-~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 80 SKLKP-LTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred HHhhc-ccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEec
Confidence 99998 77999999999999999999999878999999999999999999999998899999999999999999998888
Q ss_pred cccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHH
Q 024121 169 EKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 246 (272)
Q Consensus 169 e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~ 246 (272)
|+.+|.+++++ +|+|++.++|+|.+++.+.|++++++++++.+++.|+..++.+++.+|..|+++|+||||+|++||+
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiagl~ 238 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGLR 238 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 247 ELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
.|++.+|+..+.++++++++|++||+
T Consensus 239 ~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 239 VLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999985
No 2
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.5e-52 Score=353.97 Aligned_cols=262 Identities=35% Similarity=0.618 Sum_probs=247.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
.+||+|||+|+||.+|+++|.++|+..+.+|++| +|++++++.+.+ .|+..+.++.+++++||+||+||||+++.+++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~-~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICS-DLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEE-CCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHH
Confidence 4689999999999999999999987566689999 999999988876 78877778888899999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 167 (272)
+++.++++++++|||+++|++++.++++++ ..+++|+|||.|..+++|.+.++++++.++++.+.++.+|+.+|.++++
T Consensus 81 ~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~ 160 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVV 160 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 999988888899999999999999999987 4589999999999999999999998888999999999999999999888
Q ss_pred CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 168 DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 168 ~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
+|+++|.+++++ +|+|++.+++++.+++.+.|++++++.+++.+++.|+..++.+++.+|..++++++||||+|++|+
T Consensus 161 ~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGtT~~gl 240 (272)
T PRK12491 161 NEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAV 240 (272)
T ss_pred cHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHH
Confidence 999999999998 999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 246 HELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
+.|++++|+..+.++++++++|++||+
T Consensus 241 ~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 241 ATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999974
No 3
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=100.00 E-value=2.6e-47 Score=321.35 Aligned_cols=257 Identities=39% Similarity=0.643 Sum_probs=235.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
|+.|||+|||+|+||++|+.+|.+++..++.+++++ +|++++. +.....++.++++++|+||+|+||+++.++
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~-~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~v 73 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYH-TPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKV 73 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEE-CCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHH
Confidence 456899999999999999999999886555579999 9987542 444556777888899999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
+.++.+++. +++|||+++|++.+.+++.++ ..+++|+|||+|..++.|.+.+++.++.+++..+.++.+|+.+|.+++
T Consensus 74 l~~i~~~l~-~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~ 152 (260)
T PTZ00431 74 LLEIKPYLG-SKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQE 152 (260)
T ss_pred HHHHHhhcc-CCEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 999998875 468899999999999999887 346899999999999999999998888888999999999999999988
Q ss_pred cCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 167 ADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 167 ~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
++|+++|.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+..++.+++.+|..++++++||||+|++|
T Consensus 153 v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~T~~g 232 (260)
T PTZ00431 153 IKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIVG 232 (260)
T ss_pred EChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChHHHHH
Confidence 8999999999998 89999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++.|+++||+..+.++++++++|++||+
T Consensus 233 l~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 233 LYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999985
No 4
>PLN02688 pyrroline-5-carboxylate reductase
Probab=100.00 E-value=1.2e-46 Score=319.31 Aligned_cols=262 Identities=72% Similarity=1.090 Sum_probs=242.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~~ 90 (272)
|||+|||+|+||++|+++|.++|++++.+|++|.+|++++.+.+.+.|+.+..++.++++++|+||+||||+++++++.+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 78999999999999999999999766667777658999998888888998888888889999999999999999999999
Q ss_pred hchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 91 IRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 91 l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
+.+.++++++|||++++++.+.+++.++..+++|.||+.|...+.+.+.++.+...+++.++.++++|+.+|..++++|+
T Consensus 81 l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e~ 160 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEK 160 (266)
T ss_pred HHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 98888889999999999999999987774479999999999999999999888778899999999999999997778999
Q ss_pred cchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHH
Q 024121 171 LFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 248 (272)
Q Consensus 171 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l 248 (272)
.+|.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+..++.+++.+|..+++++++|+|+|+++++.|
T Consensus 161 ~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~spgG~t~~~l~~l 240 (266)
T PLN02688 161 LLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVHEL 240 (266)
T ss_pred HcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHHHH
Confidence 999999987 899999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 249 EKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
+++||+..+.++++++++|++|++
T Consensus 241 ~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 241 EKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999975
No 5
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=8.1e-47 Score=320.95 Aligned_cols=260 Identities=22% Similarity=0.328 Sum_probs=236.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-c-CceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~-g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
|+||+|||+|+||.+++.+|.++|.+++.+|.+| +|++ ++.+.+.. . ++.+..+..++++++|+||+|+||+++.+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHH
Confidence 3689999999999999999999983334489999 7754 44555544 3 35556777788899999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 166 (272)
++.++.++++++++|||+++|++.+.+++.++..+++|.|||.|..++.|.+.++.+++.++++.+.++.+|+.+|+.++
T Consensus 80 vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~ 159 (277)
T PRK06928 80 LLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMT 159 (277)
T ss_pred HHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 99999988888889999999999999999988668999999999999999999998888899999999999999999988
Q ss_pred cCcccchhHHHch--HHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHH
Q 024121 167 ADEKLFDAITGLS--GPAYIFLAIEALADGGVAA-GLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA 243 (272)
Q Consensus 167 ~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~ 243 (272)
++|+++|.+++++ +|+|++.+++++.+++.+. |++++++++++.+++.|+.+++.+++.+|..++++++||||+|++
T Consensus 160 v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~~~v~spgGtT~~ 239 (277)
T PRK06928 160 IREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGITAE 239 (277)
T ss_pred EchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHhCCCCChHHHH
Confidence 8999999999998 9999999999999999998 799999999999999999999988889999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 244 GIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 244 ~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
||+.|++ +|++.+.++++++.+|++++
T Consensus 240 gl~~le~-~~~~~~~~~~~~a~~r~~~~ 266 (277)
T PRK06928 240 GAEVIQA-QLPQFFDELLDRTQKKYASS 266 (277)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999997 99999999999999999986
No 6
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=2.2e-46 Score=319.15 Aligned_cols=264 Identities=31% Similarity=0.517 Sum_probs=241.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
|+.|||+|||+|+||.+|+++|.++|...+.+|++| +|++ ++.+.+.. .|+....++.++++++|+||+||||+++.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~-~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~ 79 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVS-NRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVA 79 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHH
Confidence 466899999999999999999999983344589999 9976 46677766 58888888888889999999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~ 164 (272)
+++.++.+.++++++|||+++|++.+.++++++ +.+++|.|||.|...+.+.+++++++..+++..+.++++|+.+|..
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~ 159 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLV 159 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcE
Confidence 999999888888999999999999999998886 4689999999999999999999888878889999999999999998
Q ss_pred EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHH
Q 024121 165 WRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 242 (272)
Q Consensus 165 ~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~ 242 (272)
++++|+.++.+++++ +|+|++.+++++.+++++.|+|++++++++.+++.|+..++.+++.+|..+.+++++|+|+|+
T Consensus 160 ~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~spgg~t~ 239 (279)
T PRK07679 160 SVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGTTE 239 (279)
T ss_pred EEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCchHHH
Confidence 888899888888887 999999999999999999999999999999999999999988778899999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 243 AGIHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 243 ~~l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++|+.|++++|+..+.++++++++|++||+
T Consensus 240 ~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 240 AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974
No 7
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=4.3e-44 Score=303.73 Aligned_cols=259 Identities=47% Similarity=0.746 Sum_probs=237.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
+|||+|||+|+||++++..|.++|+ .+.+|.+| +|++++.+.+.+ .|+.+..+..+++.++|+||+|+|++++.+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~-~~~~v~v~-~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGV-PAKDIIVS-DPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCC-CcceEEEE-cCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 5789999999999999999999983 23389999 999999888877 48887778888889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 167 (272)
+++.+++ +++|||+++|++.+.+++.++ +.+++++||++|...+.+.+.++++...+++..+.++.+|+.+|..+++
T Consensus 80 ~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~ 157 (267)
T PRK11880 80 SELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWV 157 (267)
T ss_pred HHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEE
Confidence 9998876 579999999999999998887 5789999999999999999988888888999999999999999987555
Q ss_pred -CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 168 -DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 168 -~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
+|+.+|.+++++ +|+|++.+++++.+++.+.|++++++.+++.+++.|+.+++.+.+.+|..+++++++|||+|+++
T Consensus 158 ~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tpgG~t~~g 237 (267)
T PRK11880 158 DDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTIAA 237 (267)
T ss_pred CChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCcHHHHHH
Confidence 588999999887 89999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
++.|+++|++..+.++++++++|++||+
T Consensus 238 l~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 238 LRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
No 8
>PRK07680 late competence protein ComER; Validated
Probab=100.00 E-value=7.4e-43 Score=296.72 Aligned_cols=257 Identities=21% Similarity=0.401 Sum_probs=234.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-CceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|+|+|||+|+||++++.+|.++|++.+.+|.+| +|++++.+.+.+ . |+....++.+++.++|+||+||||+++.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTIT-NRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHH
Confidence 589999999999999999999985455589999 999998888776 3 7777778888889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 168 (272)
+++.++++++++|||+++|++.+.+++.++ .+++++||+.+...+.|.+.++.++..+++..+.++++|+.+|..++++
T Consensus 80 ~~l~~~l~~~~~iis~~ag~~~~~L~~~~~-~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~ 158 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSPISVEQLETLVP-CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVIE 158 (273)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcC-CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEEEC
Confidence 999998888999999999999999998887 5789999999987888988877777778888899999999999888888
Q ss_pred cccchhHHHch--HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 169 EKLFDAITGLS--GPAYIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 169 e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
|+.++.+++++ +|+|++.+++++.+++.+ .|++++++++++.+++.|+.+++.+++.+|..++++++||||+|++|+
T Consensus 159 e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~~v~spgG~T~~gl 238 (273)
T PRK07680 159 EDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGITGEGI 238 (273)
T ss_pred hHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHHH
Confidence 98899988887 899999999999998887 899999999999999999999998888899999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhh
Q 024121 246 HELEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
+.|++ +|++.|.++++++.+|.++
T Consensus 239 ~~le~-~~~~~~~~~~~~~~~~~~~ 262 (273)
T PRK07680 239 KVLEE-EVGDMFHRLFQRTHEKFDE 262 (273)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999 7999999999999999765
No 9
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=100.00 E-value=1.5e-42 Score=289.59 Aligned_cols=239 Identities=48% Similarity=0.736 Sum_probs=223.0
Q ss_pred hCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 31 KSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 31 ~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+.|.+++.+|.+| +|++++++++.+ .|+.+..++.++++++|+||+||||+++.++++++.+.+.++++|||+++|++
T Consensus 3 ~~~~~~~~~I~v~-~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~ 81 (245)
T TIGR00112 3 KAGALAAYDIIVI-NRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVT 81 (245)
T ss_pred CCCCCCCCeEEEE-cCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCC
Confidence 3454566799999 999999888866 68888888889899999999999999999999999887778899999999999
Q ss_pred HHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcCcccchhHHHch--HHHHHHH
Q 024121 110 LKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLS--GPAYIFL 186 (272)
Q Consensus 110 ~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~~~~--~~~~~~~ 186 (272)
.+.++++++ +.+++|+|||.|..+++|.+.+++++..+++..+.++++|+.+|.+++++|++++.+++++ +|+|++.
T Consensus 82 ~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~ 161 (245)
T TIGR00112 82 LEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFL 161 (245)
T ss_pred HHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHH
Confidence 999999987 3689999999999999999999998888899999999999999999888899999999998 9999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024121 187 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAK 266 (272)
Q Consensus 187 ~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l~~~~~~~~~~~~~~~~~~ 266 (272)
+++++.+++.+.|++++++.+++.+++.|+.+++.+++.+|+.++++++||||+|++|++.|+++||++.+.++++++++
T Consensus 162 ~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~gl~~Le~~~~~~~~~~a~~aa~~ 241 (245)
T TIGR00112 162 FIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVRGAVIEAVEAAVR 241 (245)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 024121 267 RSRE 270 (272)
Q Consensus 267 r~~~ 270 (272)
|++|
T Consensus 242 r~~e 245 (245)
T TIGR00112 242 RSRE 245 (245)
T ss_pred HhcC
Confidence 9976
No 10
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=2.3e-41 Score=285.42 Aligned_cols=248 Identities=23% Similarity=0.347 Sum_probs=221.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-CceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|||||||+|+||++|+++|.+.|+ ....+.+| +|++++.+++.+ . ++.++.++.++++++|+||+|+||+++.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~-~~~~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPA-DVSEIIVS-PRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-ChheEEEE-CCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHH
Confidence 589999999999999999999986 44467899 999999888877 3 5777788888889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeE-E
Q 024121 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW-R 166 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~-~ 166 (272)
.++. +.++++|||++++++.+.+++.++ +.++++.||++|...+.|.+.++++ .+.++++|+.+|..+ .
T Consensus 79 ~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 79 RALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVAALFDALGTAVEC 149 (258)
T ss_pred HHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHHHHHHhcCCcEEE
Confidence 8873 468899999999999999999887 4689999999999988888887653 258999999999774 4
Q ss_pred cCcccchhHHHch-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 167 ADEKLFDAITGLS-GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM-VTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 167 ~~e~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
.+|+.++.+++++ +++|++.+++.+.+++++.|+|++++++++.+++.|+.++ +.+++.+|..|+++++||||+|++|
T Consensus 150 ~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT~~g 229 (258)
T PRK06476 150 DSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQV 229 (258)
T ss_pred CChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchHHHH
Confidence 5688899998887 7888888999999999999999999999999999999999 5677789999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHh
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSR 269 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~ 269 (272)
|+.|+++||+..+.++++++++|++
T Consensus 230 l~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 230 LNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred HHHHHHCChHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999986
No 11
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=272.95 Aligned_cols=261 Identities=55% Similarity=0.824 Sum_probs=242.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHHcCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|++||||.|+|..++++++..+|.+.+++++.+ ..+...... +...|+..+.++.++++.+|++|++++|+.+.+++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s-~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWAS-VQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeee-cCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 689999999999999999999999888899988 664433333 566898887777999999999999999999999999
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 168 (272)
++.+.+..+++++|+..|++++.++..++ ..+++|+|||.|..+++|..++..+.+...++.+.++++++.+|....++
T Consensus 80 ~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evp 159 (267)
T KOG3124|consen 80 EIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVP 159 (267)
T ss_pred cCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCc
Confidence 99887778999999999999999998887 56899999999999999999888888888889999999999999999999
Q ss_pred cccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHH
Q 024121 169 EKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 246 (272)
Q Consensus 169 e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~ 246 (272)
|..+|.+|+++ +|+|.+..+|+|.+.+.+.|++++.++++..+++.|+.+|++.++.+|..|+|+++||+|+|+.++.
T Consensus 160 E~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~SPgG~TI~glh 239 (267)
T KOG3124|consen 160 EKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVCSPGGTTIYGLH 239 (267)
T ss_pred HHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCCCCCcchHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024121 247 ELEKSGFRGILMNAVVAAAKRSRELS 272 (272)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (272)
.||+++|+..+.++++++..|++||+
T Consensus 240 ~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 240 ALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999985
No 12
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.5e-39 Score=272.58 Aligned_cols=240 Identities=27% Similarity=0.467 Sum_probs=214.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
||..+||+|||+|+||.+++..|.++|+....+++++ +| ++++.+.+.+ .++..+.+.+++++++|+||+|+|++.+
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~ 79 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVS-NRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAH 79 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEE-CCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHH
Confidence 4567899999999999999999998874223347788 77 5778877776 6777777888889999999999999999
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~ 163 (272)
++++.++.++++ +++|||+++|++.+.+++.++ +.+++|.|||.+..++.|.+.++...+.+++..+.++++|+.+|.
T Consensus 80 ~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~ 158 (245)
T PRK07634 80 EELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGT 158 (245)
T ss_pred HHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCC
Confidence 999999988774 689999999999999999887 357899999999999999988887777889999999999999999
Q ss_pred eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchH
Q 024121 164 IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 241 (272)
Q Consensus 164 ~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t 241 (272)
.++++|++++.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+..++.+ +.+|+.++++++||||+|
T Consensus 159 ~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~l~~~v~spgG~T 237 (245)
T PRK07634 159 SQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ-TQDPANLREQVTTPGGST 237 (245)
T ss_pred EEEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHhCCCCChHH
Confidence 8778899999999887 9999999999999999999999999999999999999999875 578999999999999999
Q ss_pred HHHHHHHH
Q 024121 242 IAGIHELE 249 (272)
Q Consensus 242 ~~~l~~l~ 249 (272)
++|++.|+
T Consensus 238 ~~gl~~l~ 245 (245)
T PRK07634 238 AEGLKALY 245 (245)
T ss_pred HHHHHHhC
Confidence 99999885
No 13
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.98 E-value=2.2e-30 Score=222.10 Aligned_cols=218 Identities=17% Similarity=0.210 Sum_probs=185.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v 87 (272)
+.+||+|||+|+||.+++++|.++|+ +|.++.+++.++.+++.+.|+.+. ++.+++++||+|++++||+ +...+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~----~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v 76 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL----NVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVY 76 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC----eEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHH
Confidence 46899999999999999999999998 887652555556666667788764 5778889999999999999 77777
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhh-h------cCCceEEE-eCCCCCHHHHHHHHHHh
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-V------GEAATVMS-LGGTATEEDGELIGKLF 158 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~-~------~~g~~~~~-~~~~~~~~~~~~v~~ll 158 (272)
++++.+.++++ .+|+++.|+++..++..++ +.+++|+|||.|.. + +.|.+.++ .+.+.+.+..+.+..+|
T Consensus 77 ~~ei~~~l~~g-~iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~ 155 (314)
T TIGR00465 77 EAEIQPLLKEG-KTLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYA 155 (314)
T ss_pred HHHHHhhCCCC-cEEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHH
Confidence 77788888777 4899999999999988777 56899999999998 4 99998885 77778889999999999
Q ss_pred hhcCCe-------E---EcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024121 159 GSVGKI-------W---RADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 226 (272)
Q Consensus 159 ~~~G~~-------~---~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~ 226 (272)
+.+|.. . ++.|+.++..++++ +|+|++.+++++ .+.|++++.|+.++.+++.++.+++.+++.
T Consensus 156 ~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal----v~~G~~~e~A~~~~~~~~~g~~~l~~e~g~- 230 (314)
T TIGR00465 156 KAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL----VEAGYQPELAYFETVHELKLIVDLIYEGGI- 230 (314)
T ss_pred HHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHhcH-
Confidence 999966 3 56788999999999 899999888776 589999999999999999999999987665
Q ss_pred HHHHHHhcCCCc
Q 024121 227 PGQLKDDVASPG 238 (272)
Q Consensus 227 ~~~l~~~~~~~~ 238 (272)
..+++.+++..
T Consensus 231 -~~l~~~Vssta 241 (314)
T TIGR00465 231 -TGMRDRISNTA 241 (314)
T ss_pred -HHHHHHcCCHH
Confidence 68999998753
No 14
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.97 E-value=2e-29 Score=210.88 Aligned_cols=247 Identities=18% Similarity=0.208 Sum_probs=185.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v~ 88 (272)
+||+|||+|.||.+||.+|.++|| +|++| ||++++ .+.+++.|+..+.++.|+++.+|+||+||++ +++++|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~----~v~v~-~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~ 75 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH----EVTVY-NRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVL 75 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC----EEEEE-eCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH
Confidence 589999999999999999999999 99999 999999 5556668999999999999999999999975 4789999
Q ss_pred H---HhchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEE--ccCchhhhcCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 89 M---QIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV--MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 89 ~---~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~--~p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
. .+.+.+++++++|++ ++++++. +.+.+. +..++.. ..+.+. ...|. ++++.| +++.+++++|+
T Consensus 76 ~g~~g~~~~~~~G~i~IDm-STisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~-A~~GtLtimvGG---~~~~f~r~~pv 150 (286)
T COG2084 76 FGENGLLEGLKPGAIVIDM-STISPETARELAAALAAKGLEFLDAPVSGGVPG-AAAGTLTIMVGG---DAEAFERAKPV 150 (286)
T ss_pred hCccchhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhcCCcEEecCccCCchh-hhhCceEEEeCC---CHHHHHHHHHH
Confidence 4 577778899999987 4566543 333332 2333321 112222 23444 445544 79999999999
Q ss_pred hhhcCC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 024121 158 FGSVGK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 233 (272)
Q Consensus 158 l~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 233 (272)
|+.+|+ .+++++......++++.+.++...+.++.| .+++.|+|++.+++++..+..+++.+-. ..+.+.+.
T Consensus 151 l~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~----~~~~m~~~ 226 (286)
T COG2084 151 LEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILEN----YGPRMLEG 226 (286)
T ss_pred HHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHh----hcchhhcC
Confidence 999996 589999999999998844444444444444 4689999999999999998887776543 22456677
Q ss_pred cCCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhc
Q 024121 234 VASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 234 ~~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
.++|++.....++.| ++.++.-.+.....+.|+.....
T Consensus 227 ~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~ 271 (286)
T COG2084 227 DFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAA 271 (286)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhc
Confidence 789998887777765 33467667777777777776543
No 15
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=190.40 Aligned_cols=249 Identities=19% Similarity=0.183 Sum_probs=184.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v 87 (272)
+.++|||||+|+||++|+.+|+++|| .|++| ||+.++.+.+++.|.++.+++.|+++++|+||.|||. .+++++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~----kVtV~-dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v 108 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY----KVTVY-DRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDV 108 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC----EEEEE-eCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHH
Confidence 46799999999999999999999999 99999 9999999999999999999999999999999999974 578888
Q ss_pred HHH---hchhcCCCCEE-EEEcCCCCHH---HHHHHhC--CCCEEEEc--cCchhhhcCCceEEEeCCCCCHHHHHHHHH
Q 024121 88 AMQ---IRPLLSRKKLL-VSVAAGVKLK---DLQEWTG--HSRFIRVM--PNTPSAVGEAATVMSLGGTATEEDGELIGK 156 (272)
Q Consensus 88 ~~~---l~~~l~~~~~i-is~~~~~~~~---~l~~~~~--~~~~~~~~--p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ 156 (272)
+.. +...+++++.. |++ ++++++ ++++.+. +++++... .+.. ...+|...++.| .+++.++++.+
T Consensus 109 ~~g~~Gvl~g~~~g~~~~vDm-STidp~~s~ei~~~i~~~~~~~vDAPVSGg~~-~A~~G~Ltimag--Gde~~~~~~~~ 184 (327)
T KOG0409|consen 109 LLGKSGVLSGIRPGKKATVDM-STIDPDTSLEIAKAISNKGGRFVDAPVSGGVK-GAEEGTLTIMAG--GDEALFEAASP 184 (327)
T ss_pred hcCCCcceeeccCCCceEEec-cccCHHHHHHHHHHHHhCCCeEEeccccCCch-hhhcCeEEEEec--CcHHHHHHHHH
Confidence 854 44445677766 665 556554 4444433 34455321 1111 124566555555 48999999999
Q ss_pred HhhhcCC-eEEcCcccchhHHHchHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 024121 157 LFGSVGK-IWRADEKLFDAITGLSGP----AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 231 (272)
Q Consensus 157 ll~~~G~-~~~~~e~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 231 (272)
+|+.+|+ .++++...-....+++.+ ..+..+.|++. .+.+.|+|.....+++..+-.+++.+.. ..+.+.
T Consensus 185 ~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~-la~r~GLd~~~l~eiln~G~~~S~~~~~----~~p~m~ 259 (327)
T KOG0409|consen 185 VFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALA-LADRLGLDAKKLLEILNTGRCWSSMFYN----PVPGML 259 (327)
T ss_pred HHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCcccHHHhC----cCchhh
Confidence 9999995 588999888888888722 23344566665 5789999999999999986666654432 345666
Q ss_pred HhcCCCcchHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHhhc
Q 024121 232 DDVASPGGTTIAGIHELE-------KSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 232 ~~~~~~~g~t~~~l~~l~-------~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
+.++.|++.+....+.|. +.+....+....++.|++.++.
T Consensus 260 k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~ 306 (327)
T KOG0409|consen 260 KGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKAL 306 (327)
T ss_pred cCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhc
Confidence 777899998887766652 2244555666677777776653
No 16
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.95 E-value=9.5e-26 Score=191.97 Aligned_cols=246 Identities=17% Similarity=0.233 Sum_probs=182.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||+|||+|+||++|+.+|.++|+ ..+|++| +|++++.+.+.+.|+. ...+..++. ++|+||+|||++.+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~--~~~v~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL--ISKVYGY-DHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CCEEEEE-cCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH
Confidence 589999999999999999999985 2268899 9999988888777753 344556654 5999999999999999999
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhC---CCCEEEEccCc------hhhh----cCC-ceEEEeCCCCCHHHHHHHH
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG---HSRFIRVMPNT------PSAV----GEA-ATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~---~~~~~~~~p~~------~~~~----~~g-~~~~~~~~~~~~~~~~~v~ 155 (272)
++.+ ++++++|+++ ++++.. +.+.+. ..++++.||+. |... ..| .+++++.+..+++.++.++
T Consensus 77 ~l~~-l~~~~iv~d~-gs~k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~ 153 (275)
T PRK08507 77 KLLD-IKENTTIIDL-GSTKAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAK 153 (275)
T ss_pred HHhc-cCCCCEEEEC-ccchHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHH
Confidence 9988 8889988874 444333 333222 24689999974 3221 234 3456666666788899999
Q ss_pred HHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 024121 156 KLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD 232 (272)
Q Consensus 156 ~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~ 232 (272)
++|+.+|. ++++++++||..++++ .|+++. .++++... .+.+.+....+..++|+++++++. .+|++|.+
T Consensus 154 ~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a---~~l~~~~~-~~~~~~~~~~~~~~gfrd~tria~---~~p~l~~~ 226 (275)
T PRK08507 154 EIFSGLGMRIVYMDAKEHDLHAAYISHLPHIIS---FALANTVL-KEEDERNIFDLAGGGFRSMSRLAK---SSPAMWSD 226 (275)
T ss_pred HHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHH---HHHHHHHH-hcCChHHHHhhcccchhhhhhccc---CCHHHHHH
Confidence 99999994 5889999999999988 555433 35554443 466777788999999999998864 58999999
Q ss_pred hcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 233 DVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 233 ~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+..+.....+.++.+.+. .+...+. +.+.+.++++++
T Consensus 227 i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 270 (275)
T PRK08507 227 IFKQNKENVLEAIDEFIKELEQFKQLIENEDWEELEEWMEQANK 270 (275)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887777777766554 4444442 355555555543
No 17
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.95 E-value=3.2e-26 Score=195.10 Aligned_cols=248 Identities=16% Similarity=0.203 Sum_probs=182.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||+|||+|.||.+++..|.++|+ +|++| +|++++.+++.+.|.. ...+..+.++++|+||+|+|++.+.++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~----~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH----TVYGV-SRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHH
Confidence 589999999999999999999999 99999 9999988888777642 23333456789999999999999999999
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhh-----------hcCCceEEEeCCCCCHHHHHHHHHH
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-----------VGEAATVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~-----------~~~g~~~~~~~~~~~~~~~~~v~~l 157 (272)
++.++++++.+|+ .+++++...++.... ..++++.||..... ......++++.+..+++.++.++++
T Consensus 76 ~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l 154 (279)
T PRK07417 76 QLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEEL 154 (279)
T ss_pred HHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHH
Confidence 9988887776555 457777776665443 24688888843211 1223455677777788999999999
Q ss_pred hhhcCCe-EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHH-cCCCH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 024121 158 FGSVGKI-WRADEKLFDAITGLS--GPAYIFLAIEALADGGVA-AGLPR-ELALGLASQTVLGAASMVTKSGKHPGQLKD 232 (272)
Q Consensus 158 l~~~G~~-~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~Gl~~-~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~ 232 (272)
++.+|.. +++++++||..++++ .|++++. ++...... ..-+. +.+..+..++|+++++++. .+|.+|.+
T Consensus 155 ~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~---~l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~---~~p~~w~~ 228 (279)
T PRK07417 155 AVSLGSKIYTADPEEHDRAVALISHLPVMVSA---ALIQTCGTEKDPSVLKLAQNLASSGFADTSRVGG---GNPELGVM 228 (279)
T ss_pred HHHcCCEEEEcCHHHHHHHHHHHcchHHHHHH---HHHHHHhhcccchhhHHhhhhccCcccccccccC---CChHHHHH
Confidence 9999965 789999999999988 7777653 33322211 11111 2235788899999988864 58999999
Q ss_pred hcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 233 DVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 233 ~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+.++.....+.|+.+++. .++..+. +.+.+.++++++
T Consensus 229 i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 272 (279)
T PRK07417 229 MAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQKLEQTQE 272 (279)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887777777776554 4444443 455566665554
No 18
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.95 E-value=3.4e-26 Score=201.32 Aligned_cols=245 Identities=17% Similarity=0.191 Sum_probs=186.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce----eecCchhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++|+|||+|.||.+|+.+|.++|+ ++.+| +++++..+.....+.. ...+..+++++||+||+|||++.+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~----~v~i~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~ 75 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP----DVFII-GYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAA 75 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC----CeEEE-EeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHH
Confidence 479999999999999999999998 88888 8877654443333332 23455677899999999999999999
Q ss_pred HHHHhch-hcCCCCEEEEEcCCCCHHHH---HHHhC-CCCEEEEccCchh-----------hhcCCceEEEeCCCCCHHH
Q 024121 87 VAMQIRP-LLSRKKLLVSVAAGVKLKDL---QEWTG-HSRFIRVMPNTPS-----------AVGEAATVMSLGGTATEED 150 (272)
Q Consensus 87 v~~~l~~-~l~~~~~iis~~~~~~~~~l---~~~~~-~~~~~~~~p~~~~-----------~~~~g~~~~~~~~~~~~~~ 150 (272)
++.++.+ .++++.+|. ..++++...+ ++.++ ..++++.||.... .+....+++++++..+++.
T Consensus 76 vl~~l~~~~l~~~~ivt-Dv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 76 LLAELADLELKPGVIVT-DVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred HHHHHhhcCCCCCcEEE-eCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 9999987 477775554 4567765443 33333 3567887774321 1233456778777778999
Q ss_pred HHHHHHHhhhcCCe-EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 024121 151 GELIGKLFGSVGKI-WRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 227 (272)
Q Consensus 151 ~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~ 227 (272)
++.++++|+.+|.. +++++++||.+++++ +|+|++. +| +...+.+.+.+..+..++|+++++++. .+|
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~---al---~~~~~~~~~~~~~la~~gfrd~tRia~---~~p 225 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS---SL---AARLAGEHPLALRLAAGGFRDITRIAS---SDP 225 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH---HH---HHhhccCchHHHhhhcccccCCccccC---CCH
Confidence 99999999999965 679999999999988 8988764 33 344566778888999999999999974 689
Q ss_pred HHHHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 228 GQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 228 ~~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+|.+.+.+|++.+.+.|+.+.+. .+...+. +.+.+.++++++
T Consensus 226 ~~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 274 (359)
T PRK06545 226 GMWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGKA 274 (359)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988888665 5555554 356666666554
No 19
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.94 E-value=4.5e-25 Score=189.48 Aligned_cols=249 Identities=20% Similarity=0.177 Sum_probs=179.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~~ 89 (272)
+||+|||+|+||.+|+.+|.++|+ +|++| ||++++.+++.+.|+..+.++.++++++|+||+|||++ ++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~----~V~v~-d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH----QLQVF-DVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHc
Confidence 589999999999999999999999 99999 99999999998888887788888899999999999987 4788874
Q ss_pred ---HhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 90 ---QIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 90 ---~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
.+.+.+++++++|++++..+. ..+.+.+. +..++.+. .+.+.....|...++.| .+++.+++++++|+.+
T Consensus 77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~g--g~~~~~~~~~p~l~~~ 154 (296)
T PRK15461 77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAG--GTAEQVERATPILMAM 154 (296)
T ss_pred CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEEC--CCHHHHHHHHHHHHHH
Confidence 355667889999987554432 34444332 33444321 12233334565544444 3789999999999999
Q ss_pred CC-eEEcCcccchhHHHchHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCC
Q 024121 162 GK-IWRADEKLFDAITGLSGPAYI----FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 236 (272)
Q Consensus 162 G~-~~~~~e~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 236 (272)
|+ .+++++......++++.+.+. ..+.|++. .+++.|+|++.+.+++..+..++..+.. ..+..+.+..++
T Consensus 155 g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~-l~~~~Gld~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 230 (296)
T PRK15461 155 GNELINAGGPGMGIRVKLINNYMSIALNALSAEAAV-LCEALGLSFDVALKVMSGTAAGKGHFTT---TWPNKVLKGDLS 230 (296)
T ss_pred cCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCcccChHHHc---cccchhccCCCC
Confidence 95 588888766777777632222 23344443 5689999999999999877666554432 234355566678
Q ss_pred CcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 237 PGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 237 ~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
|+++.....+.+ ++.++...+.++..+.|+++.+
T Consensus 231 ~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~ 271 (296)
T PRK15461 231 PAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARA 271 (296)
T ss_pred CCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 877655555543 5568888888888888888765
No 20
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.94 E-value=4.7e-26 Score=218.23 Aligned_cols=248 Identities=17% Similarity=0.217 Sum_probs=194.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
.+||+|||+|+||.++++.|.+.|+ ..+|++| +|++++.+.+.+.|+. ...+..++++++|+||+|||++.+.++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~--~~~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v 79 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGL--AREVVAV-DRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKV 79 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC--CCEEEEE-ECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 4789999999999999999999883 1279999 9999888877777764 344566778899999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCC---HHHHHHHhCCCCEEEEccCchhhh--------------cCCceEEEeCCCCCHHH
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAV--------------GEAATVMSLGGTATEED 150 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~~~~~~~~~p~~~~~~--------------~~g~~~~~~~~~~~~~~ 150 (272)
++++.++++++.+|+ ..++++ .+.+++.++. ..++++|++|... ..+.+++++....+++.
T Consensus 80 l~~l~~~~~~~~ii~-d~~svk~~~~~~l~~~~~~-~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 80 LADLKPLLSEHAIVT-DVGSTKGNVVDAARAVFGE-LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred HHHHHHhcCCCcEEE-EcCCCchHHHHHHHHhccc-cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 999998887776554 456666 4566666553 3567888888542 12234667777778889
Q ss_pred HHHHHHHhhhcCCe-EEcCcccchhHHHch--HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024121 151 GELIGKLFGSVGKI-WRADEKLFDAITGLS--GPA-YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 226 (272)
Q Consensus 151 ~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~ 226 (272)
.+.++++|+.+|.. +++++++||.+++++ +|+ |.+.+++++. +.|. ...++++..++|+++++++. .+
T Consensus 158 ~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~----~~~~-~~~~~~~a~~~f~~~tRia~---~~ 229 (735)
T PRK14806 158 LARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLA----NRED-NLDIFRYAAGGFRDFTRIAA---SD 229 (735)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHh----hcCC-hhHHHhhhccchhccccccc---CC
Confidence 99999999999964 788999999999998 887 5666666554 3443 33577899999999999873 68
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHh--CCHHHHHH----HHHHHHHHHHhh
Q 024121 227 PGQLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 227 ~~~l~~~~~~~~g~t~~~l~~l~~--~~~~~~~~----~~~~~~~~r~~~ 270 (272)
|++|.+.+.+|++++.++++.|++ ++|...+. +.+.+.++++++
T Consensus 230 p~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 279 (735)
T PRK14806 230 PVMWHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLGVFTRARA 279 (735)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999988 57777776 466666666554
No 21
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.94 E-value=1e-24 Score=186.59 Aligned_cols=245 Identities=16% Similarity=0.160 Sum_probs=175.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~~ 89 (272)
|||||||+|+||.+|+++|.++|+ +|++| +|++. .+.+.+.|+..+.++.++++++|+||+|||++ ++++++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~----~v~v~-~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~ 74 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH----QLHVT-TIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLF 74 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEE-eCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHc
Confidence 589999999999999999999999 99999 99874 56777788888888889899999999999876 6788873
Q ss_pred H---hchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHHHHHHHhh
Q 024121 90 Q---IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (272)
Q Consensus 90 ~---l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~ 159 (272)
+ +.+.+.++++||++ ++++++. +.+.+. +..++.. |. .+.....|...++.+ .+++.+++++++|+
T Consensus 75 ~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~g--G~~~~~~~~~p~l~ 150 (292)
T PRK15059 75 GENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVG--GDEAVFERVKPLFE 150 (292)
T ss_pred CCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEc--CCHHHHHHHHHHHH
Confidence 2 55566789999987 4555543 333332 3455553 32 233334565444333 27889999999999
Q ss_pred hcCC-eEEcCcccchhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhc
Q 024121 160 SVGK-IWRADEKLFDAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDV 234 (272)
Q Consensus 160 ~~G~-~~~~~e~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 234 (272)
.+|+ .+++++......++++.+.+.. .+.|++. .+++.|+|++.+.+++..+...+..+ .. ....+.+..
T Consensus 151 ~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~-la~~~Gld~~~~~~~l~~~~~~s~~~-~~---~~~~~~~~~ 225 (292)
T PRK15059 151 LLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALL-FASKAGADPVRVRQALMGGFASSRIL-EV---HGERMIKRT 225 (292)
T ss_pred HHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHcCcccCHHH-Hh---hchhhhcCC
Confidence 9995 5889998888888877333333 3444444 46899999999999987665444433 21 223455566
Q ss_pred CCCcchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhh
Q 024121 235 ASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 235 ~~~~g~t~~~l~~-------l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
++|+++.....+. .++.++...+.++..+.|+.+.+
T Consensus 226 ~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~ 268 (292)
T PRK15059 226 FNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAA 268 (292)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 6787766555444 35568888888888888887764
No 22
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.94 E-value=5.8e-25 Score=197.48 Aligned_cols=246 Identities=15% Similarity=0.214 Sum_probs=187.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
|||+||| +|.||.+++..|.+.|+ +|++| +|++++..++.. .|+....+..+.+.++|+||+|+|++.+.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~----~V~v~-~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF----EVIVT-GRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH
Confidence 6899997 89999999999999999 99999 999887655444 68777777778889999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcC--CCCHHHHHHHhC-CCCEEEEccCc----hhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 89 MQIRPLLSRKKLLVSVAA--GVKLKDLQEWTG-HSRFIRVMPNT----PSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~--~~~~~~l~~~~~-~~~~~~~~p~~----~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
.++.+.++++++|+++++ +...+.+++.++ +.++++.||.. |. ......++++++..+++..+.++++|+.+
T Consensus 76 ~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~-~~g~~~il~p~~~~~~~~~~~v~~ll~~~ 154 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPS-LKGQVVILTPTEKRSNPWFDKVKNFLEKE 154 (437)
T ss_pred HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcc-cCCCEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 999999999999998765 223455666665 35788888642 22 22223456666666788899999999999
Q ss_pred CCe-EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----HHHHHhcCCCHHHHHHhc
Q 024121 162 GKI-WRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA----ASMVTKSGKHPGQLKDDV 234 (272)
Q Consensus 162 G~~-~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~----~~~~~~~~~~~~~l~~~~ 234 (272)
|.. +++++++||.+++.+ .|++++. +++.++.+.|++.+++..+..++|+.. ++.+ +.+|.+|.+..
T Consensus 155 G~~v~~~~~e~HD~~~a~vs~lph~~a~---al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa---~~~p~lw~dI~ 228 (437)
T PRK08655 155 GARVIVTSPEEHDRIMSVVQGLTHFAYI---SIASTLKRLGVDIKESRKFASPIYELMIDIIGRIL---GQNPYLYASIQ 228 (437)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHh---cCCHHHHHHHH
Confidence 954 778999999999887 6666543 455566778999999999999999986 5554 36899999998
Q ss_pred CCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHh
Q 024121 235 ASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSR 269 (272)
Q Consensus 235 ~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~ 269 (272)
.++. ...+.++.+.+. .++..+. +.+.+.+++++
T Consensus 229 ~~N~-~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~ 268 (437)
T PRK08655 229 MNNP-QIPEIHETFIKECEELSELVKNGDREEFVERMKEAA 268 (437)
T ss_pred HhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876 566777766544 4444443 44444444444
No 23
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.93 E-value=5.3e-24 Score=184.03 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=182.5
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchhhhccCCEEEEeeCcc
Q 024121 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+.+ ..++|+|||+|.||.+++..|.+.|+ ..+|++| +|++++.+.+.+.|+ ....+..++++++|+||+|+|+.
T Consensus 2 ~~~-~~~~I~IIG~G~mG~sla~~l~~~g~--~~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 2 SAP-LFDRVALIGIGLIGSSLARAIRRLGL--AGEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred Ccc-CCcEEEEEeeCHHHHHHHHHHHhcCC--CcEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH
Confidence 444 45799999999999999999999884 1279999 999998888777764 34456677789999999999999
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH---hC-CCCEEEEccCchhh-----------hcCCceEEEeCCCCC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW---TG-HSRFIRVMPNTPSA-----------VGEAATVMSLGGTAT 147 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~---~~-~~~~~~~~p~~~~~-----------~~~g~~~~~~~~~~~ 147 (272)
...+++.++.+.++++++|+++ ++++...++.. ++ +.+++..||..... ......++++....+
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~ 156 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTD 156 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC
Confidence 9999998888888888777654 66665544433 33 23456656543211 011234466655667
Q ss_pred HHHHHHHHHHhhhcCCe-EEcCcccchhHHHch--HHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024121 148 EEDGELIGKLFGSVGKI-WRADEKLFDAITGLS--GPAYIFLAIEALADGGV-AAGLPRELALGLASQTVLGAASMVTKS 223 (272)
Q Consensus 148 ~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~Gl~~~~a~~~~~~~~~g~~~~~~~~ 223 (272)
++.++.++++|+.+|.. ++++++.||..++++ +|++++..+ +.... ....+.+....+...+|++++++..
T Consensus 157 ~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l---~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~-- 231 (307)
T PRK07502 157 PAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTI---VGTADDLERVTESEVIKYSASGFRDFTRIAA-- 231 (307)
T ss_pred HHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHH---HHHHhhhcccchHHHHHhccccccccccccc--
Confidence 88899999999999965 788999999999988 888876543 22221 1233445566788888988887764
Q ss_pred CCCHHHHHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 224 GKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 224 ~~~~~~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.+|++|.+.+..+.....+.|+.+++. .++..+. +.+.+.++++++
T Consensus 232 -~~~~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 283 (307)
T PRK07502 232 -SDPTMWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFTRTRA 283 (307)
T ss_pred -CChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 589999999988887777777777664 4555553 355555555543
No 24
>PLN02256 arogenate dehydrogenase
Probab=99.93 E-value=8e-24 Score=181.28 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=179.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhh-ccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDivil~v~~~~~~~ 86 (272)
+..++|+|||+|.||.+++..|.+.|+ +|++| ++++.. +...+.|+....+..+++ .++|+||+|||++.+.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~----~V~~~-d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~ 107 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH----TVLAT-SRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEA 107 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHH
Confidence 456899999999999999999999998 99999 888642 334447777666777765 47999999999999999
Q ss_pred HHHHh-chhcCCCCEEEEEcC--CCCHHHHHHHhC-CCCEEEEccCchhhhcC----CceEEEeC-----CCCCHHHHHH
Q 024121 87 VAMQI-RPLLSRKKLLVSVAA--GVKLKDLQEWTG-HSRFIRVMPNTPSAVGE----AATVMSLG-----GTATEEDGEL 153 (272)
Q Consensus 87 v~~~l-~~~l~~~~~iis~~~--~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~----g~~~~~~~-----~~~~~~~~~~ 153 (272)
++.++ .++++++++|+|+.+ +...+.+++.++ +.++++.||+.+.+.+. +...+... +..+++..+.
T Consensus 108 vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 187 (304)
T PLN02256 108 VLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER 187 (304)
T ss_pred HHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence 99988 577889999998866 344566777665 45799999987765432 22222221 3446788899
Q ss_pred HHHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCCHHH
Q 024121 154 IGKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQ 229 (272)
Q Consensus 154 v~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~~ 229 (272)
++++|+.+|. .++++.++||.+++.+ .|+.++ .++.. ...+ ...+...+|++.++++.+ ...+|.+
T Consensus 188 l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la---~~L~~----~~~~---~~~~~~~gfrd~tria~r~~~~~p~l 257 (304)
T PLN02256 188 FLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVG---RILGK----MELE---STPINTKGYETLLRLVENTSSDSFDL 257 (304)
T ss_pred HHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHH---HHHHH----cCCc---ccccccccHHHHHHHHHhhcCCCHHH
Confidence 9999999995 5889999999998876 555433 23332 2222 146778889998888741 2358999
Q ss_pred HHHhcCCCcchHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Q 024121 230 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAKR 267 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~~~~~~~~r 267 (272)
|.+.+..+.... +.++.+.+. .|+..+..-+...++|
T Consensus 258 w~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~~~~~~~~~~ 296 (304)
T PLN02256 258 YYGLFMYNPNAT-EELERLELAFDSVKKQLFGRLHDVLRK 296 (304)
T ss_pred HHHHHHHChHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999998887776 888888775 6666666666555544
No 25
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.92 E-value=2.7e-23 Score=178.03 Aligned_cols=245 Identities=18% Similarity=0.205 Sum_probs=176.9
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHHH---HH
Q 024121 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA---MQ 90 (272)
Q Consensus 15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v~---~~ 90 (272)
|||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|||+ +++++++ ++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH----PVRVF-DLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcch
Confidence 68999999999999999999 99999 9999999999888988888889999999999999987 5688888 67
Q ss_pred hchhcCCCCEEEEEcCCCCHHH---HHHHhC--CCCEEEEcc--CchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC
Q 024121 91 IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (272)
Q Consensus 91 l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~~~~~~~~p--~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~ 163 (272)
+.+.+++++++|+++ +++.+. +.+.+. +..++.. | +.+.....|...++.|. +++.++.++++|+.+|+
T Consensus 76 l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~~g~l~~~~gg--~~~~~~~~~~~l~~~g~ 151 (288)
T TIGR01692 76 ILPKVAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGARAGTLTFMVGG--VAEEFAAAEPVLGPMGR 151 (288)
T ss_pred HhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHhhCcEEEEECC--CHHHHHHHHHHHHHhcC
Confidence 877888999999875 666543 333332 3445543 2 22333345554444342 67889999999999995
Q ss_pred -eEEcCcccchhHHHchHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhc
Q 024121 164 -IWRADEKLFDAITGLSGPAYIFL----AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPG----QLKDDV 234 (272)
Q Consensus 164 -~~~~~e~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~----~l~~~~ 234 (272)
.+++++...+..++++.+.+... +.|++. .+++.|+|+++..+++..+...+..+... ...+. .+.++.
T Consensus 152 ~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gld~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~ 229 (288)
T TIGR01692 152 NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMA-LGEKLGLDPKVLFEIANTSSGRCWSSDTY-NPVPGVMPQAPASNG 229 (288)
T ss_pred CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCccCcHHHHh-CCCccccccccccCC
Confidence 58888877778888773333333 344443 56899999999999998765444322211 11111 234456
Q ss_pred CCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 235 ASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 235 ~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
++|++.....++.+ ++.++...+.++..+.|+++.+
T Consensus 230 ~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 272 (288)
T TIGR01692 230 YQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDD 272 (288)
T ss_pred CCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 67877666555544 5558888888888888888765
No 26
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.92 E-value=4e-23 Score=173.97 Aligned_cols=250 Identities=19% Similarity=0.259 Sum_probs=180.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHcCcee--ecCc-hhhhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKV--LSDN-NAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l~~~g~~~--~~~~-~~~~~~aDivil~v~~~~ 83 (272)
..++|+|+|+|.||.++++.|.++|+ .+.++ +++ .+..+...+.|+.- ..+. .+.+.++|+||+|||...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~----~v~i~-g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGL----VVRII-GRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC----eEEEE-eecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH
Confidence 46899999999999999999999999 77666 554 44444444456532 1222 566778999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhCC-CCEEEEccCchh-----hhcCCceEEEeCCCCCHHHHHHH
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTGH-SRFIRVMPNTPS-----AVGEAATVMSLGGTATEEDGELI 154 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~~-~~~~~~~p~~~~-----~~~~g~~~~~~~~~~~~~~~~~v 154 (272)
+.++++++.++++++.+|++. ++++.. .+++..++ .+++..||.... .......++++.+..+.+.++.+
T Consensus 77 ~~~~l~~l~~~l~~g~iv~Dv-~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVTDV-GSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred HHHHHHHhcccCCCCCEEEec-ccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 999999999999999998886 445544 44455542 368888886433 12334566788776778899999
Q ss_pred HHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 024121 155 GKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 231 (272)
Q Consensus 155 ~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 231 (272)
+.+|+.+|. .++++.++||..++.+ .|++++. ++.....+.+.......++...+|+..++++. .+|.+|.
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~---al~~~~~~~~~~~~~~~~~as~~frd~tRia~---~~P~m~~ 229 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAAL---ALANALAKLETEELLVLKLASGGFRDITRIAS---SDPEMYA 229 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHH---HHHHHHHhcCcchhHHHhccccchhhHHHHHc---CChHHHH
Confidence 999999994 5889999999999987 5665443 55544555555455578899999998888875 5899999
Q ss_pred HhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 232 DDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 232 ~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
+....+.....+.++.+.+. .+...+. +.+.+.++++++
T Consensus 230 dI~~~N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~~~~~a~~ 274 (279)
T COG0287 230 DIQLSNKEALLEAIERFAKSLDELKELIENGDAEALADLFEEAKK 274 (279)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99988887666666665443 2222222 455555555554
No 27
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.92 E-value=3.2e-23 Score=186.88 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=146.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----Cce---eecCchhhhcc---CCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVK---VLSDNNAVVEY---SDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---aDivil~ 78 (272)
+.++|||||+|.||++|+++|+++|| +|++| ||++++.+.+.+. |.. .+.++.++++. +|+||+|
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~----~V~V~-NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEE
Confidence 56789999999999999999999999 99999 9999999988763 543 56788888875 9999999
Q ss_pred eCcc-cHHHHHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHH
Q 024121 79 VKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGE 152 (272)
Q Consensus 79 v~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (272)
||+. ++++|++++.+.+.++++||++++..+. ..+.+.+. +.+++.+ +.+.|.....|.++++.| +++.++
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG---~~~a~~ 156 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGG---SFEAYK 156 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecC---CHHHHH
Confidence 9865 6889999999999999999998554332 23333332 3455543 123344456677555444 789999
Q ss_pred HHHHHhhhcC-C------eEEcCcccchhHHHchHHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHH
Q 024121 153 LIGKLFGSVG-K------IWRADEKLFDAITGLSGPAYIFLAIEALADG---GVA-AGLPRELALGLAS 210 (272)
Q Consensus 153 ~v~~ll~~~G-~------~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~~ 210 (272)
+++++|+.+| + ++++++.....+++++.+.+.+..+.+++|+ +++ .|+++++..+++.
T Consensus 157 ~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~ 225 (493)
T PLN02350 157 NIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFA 225 (493)
T ss_pred HHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 9999999998 3 5788988878888887554555555555554 456 5999999988854
No 28
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.91 E-value=1.2e-22 Score=174.78 Aligned_cols=199 Identities=16% Similarity=0.146 Sum_probs=149.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhcc---CCEEEEeeCcc-cHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDivil~v~~~-~~~~ 86 (272)
|+|||||+|+||.+|+++|.++|+ +|.+| ||++++.+.+.+.|+..+.++++++++ +|+||+|||++ ++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH----EVVGY-DVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 589999999999999999999999 99999 999999999888888888888888776 69999999987 8899
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
+++++.+.+++++++|++++..+. ..+.+.+. +..++.. +.+.|.....|.+++..| +++.+++++++|+.+
T Consensus 76 v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~ 152 (299)
T PRK12490 76 VIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGG---DKEIYDRLEPVFKAL 152 (299)
T ss_pred HHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecC---CHHHHHHHHHHHHHh
Confidence 999998888899999988554432 33334332 3344432 123344445666555544 788999999999999
Q ss_pred CC----eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcC--CCHHHHHHHHHH-HHHHHH
Q 024121 162 GK----IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAG--LPRELALGLASQ-TVLGAA 217 (272)
Q Consensus 162 G~----~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~G--l~~~~a~~~~~~-~~~g~~ 217 (272)
|. .+++++......++++.+.+.+..+.++.| .+++.| +|++++++++.. +...+.
T Consensus 153 ~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~ 218 (299)
T PRK12490 153 APEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSW 218 (299)
T ss_pred cCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHH
Confidence 95 478888777777777744444444444444 467888 999999999985 334443
No 29
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.91 E-value=2.2e-22 Score=172.69 Aligned_cols=248 Identities=18% Similarity=0.173 Sum_probs=172.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHH--
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA-- 88 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~-- 88 (272)
||||||+|.||.+|+.+|.+.|+ +|++| ||++++.+.+.+.|.....+..++++++|+||+|+|+. +++.++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY----QLHVT-TIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence 59999999999999999999999 99999 99999999988888877778888899999999999875 567776
Q ss_pred -HHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEccC--chhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 89 -MQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 89 -~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
..+.+.+++++++|++++..+. ..+.+.+. +.+++. .|. .+.....+...++.+ .+++.++.++++|+.+
T Consensus 76 ~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~l 152 (291)
T TIGR01505 76 ENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD-APVSGGEIGAIEGTLSIMVG--GDQAVFDRVKPLFEAL 152 (291)
T ss_pred cchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHHhcCCEEEEec--CCHHHHHHHHHHHHHh
Confidence 3455667889999986543332 24544443 344554 232 222233454333333 2688999999999999
Q ss_pred CC-eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Q 024121 162 GK-IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 237 (272)
Q Consensus 162 G~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 237 (272)
|. .+++++......++++.+.+....++++.| .+++.|+|++++.+++..+..++..+.. ....+.+..++|
T Consensus 153 g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~----~~~~~~~~~~~~ 228 (291)
T TIGR01505 153 GKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEV----KGERVIDRTFKP 228 (291)
T ss_pred cCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh----hChhhhcCCCCC
Confidence 95 578887666666666533333333333333 4679999999999999877665543322 123445555677
Q ss_pred cchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 238 GGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 238 ~g~t~~-------~l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++.... .++..++.|+...+.++..+.++++.+.
T Consensus 229 ~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 269 (291)
T TIGR01505 229 GFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRAN 269 (291)
T ss_pred CcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhc
Confidence 655533 3344466688888888888888877653
No 30
>PLN02858 fructose-bisphosphate aldolase
Probab=99.91 E-value=1.3e-22 Score=202.40 Aligned_cols=249 Identities=12% Similarity=0.094 Sum_probs=184.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v 87 (272)
...||||||+|+||.+|+++|+++|| +|++| ||++++.+++.+.|+..+.++.+++++||+||+|||+ ++++++
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V 77 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF----KVQAF-EISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDV 77 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHH
Confidence 45789999999999999999999999 99999 9999999999999999999999999999999999986 467888
Q ss_pred H---HHhchhcCCCCEEEEEcCCCCHHH---HHHHhC--C--CCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHHHH
Q 024121 88 A---MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--H--SRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGK 156 (272)
Q Consensus 88 ~---~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~--~--~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ 156 (272)
+ .++.+.++++++||++ ++++++. +.+.+. + ..++.+ +.+.|.....|...++.| ++++.++++++
T Consensus 78 ~~g~~g~~~~l~~g~iivd~-STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvG--G~~~~~~~~~p 154 (1378)
T PLN02858 78 FFGDEGAAKGLQKGAVILIR-STILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIAS--GRSDAITRAQP 154 (1378)
T ss_pred HhchhhHHhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEc--CCHHHHHHHHH
Confidence 7 4577778899999987 4555543 333332 2 234432 123344445565554444 27889999999
Q ss_pred HhhhcCCe-EE-cCcccchhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 024121 157 LFGSVGKI-WR-ADEKLFDAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQL 230 (272)
Q Consensus 157 ll~~~G~~-~~-~~e~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l 230 (272)
+|+.+|+. ++ .++......++++.+.+.. .+.|++. .+++.|++++.+++++..+..++..+.. ....+
T Consensus 155 ~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~-la~~~Gld~~~l~~vl~~s~g~s~~~~~----~~~~~ 229 (1378)
T PLN02858 155 FLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMA-LGVRAGIHPWIIYDIISNAAGSSWIFKN----HVPLL 229 (1378)
T ss_pred HHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCccCHHHHh----hhhHh
Confidence 99999964 54 4887777778877333333 3444444 4789999999999999988766554432 23456
Q ss_pred HHhcCCCcchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhh
Q 024121 231 KDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 231 ~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
.+..++|+++...+.+.+ ++.++.-.+.++..+.|+++.+
T Consensus 230 ~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~ 276 (1378)
T PLN02858 230 LKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSS 276 (1378)
T ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 666778887766665554 4557887788888888877765
No 31
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.91 E-value=3.3e-22 Score=171.35 Aligned_cols=194 Identities=20% Similarity=0.181 Sum_probs=152.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
..+.++|+|||+|+||.+++.+|.+.|+ +|.++ +|+.++. +...+.|+... +..+++++||+|+++||++...
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~----~Vvv~-~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~ 87 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGV----DVVVG-LREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQA 87 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCC----EEEEE-ECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHH
Confidence 3456899999999999999999999999 99988 7764443 33344677765 7889999999999999999889
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhh-------hcCCceEEE-eCCCCCHHHHHHHH
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGELIG 155 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~-------~~~g~~~~~-~~~~~~~~~~~~v~ 155 (272)
+++ +++.+++++++++ +.+.|+++..++...+ +.++++++|+.|.. .+.|.+.++ ...+.+.++.+.+.
T Consensus 88 ~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~ 166 (330)
T PRK05479 88 EVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLAL 166 (330)
T ss_pred HHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHH
Confidence 998 7799999889877 6789999988776655 57899999999998 789998887 56667789999999
Q ss_pred HHhhhcCCe-E-----EcC-cccchhHHHch-HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 024121 156 KLFGSVGKI-W-----RAD-EKLFDAITGLS-GPAYIFLAIEALADGGVAAGLPRELALG 207 (272)
Q Consensus 156 ~ll~~~G~~-~-----~~~-e~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~Gl~~~~a~~ 207 (272)
.++..+|.. . ... |.+-+.+..-+ ...++..++.+-.+..++.|++|+.|+-
T Consensus 167 ~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~ 226 (330)
T PRK05479 167 AYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYF 226 (330)
T ss_pred HHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999943 2 222 33345554432 3344555666666778899999999863
No 32
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.91 E-value=5.3e-22 Score=170.84 Aligned_cols=248 Identities=19% Similarity=0.204 Sum_probs=171.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v~ 88 (272)
+|||+|||+|.||.+++.+|.+.|+ +|.+| ||++++.+.+.+.|+..+.+..++++++|+||+|+|+. +++.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~ 76 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGY----SLVVY-DRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVA 76 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 4689999999999999999999999 99999 99999998888888887788888899999999999854 567776
Q ss_pred ---HHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEcc--CchhhhcCCc-eEEEeCCCCCHHHHHHHHHHh
Q 024121 89 ---MQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIGKLF 158 (272)
Q Consensus 89 ---~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll 158 (272)
+++.+.++++++|+++++..+. ..+.+.+. +.+++.. | ..+.....+. .++..+ +++.++.++++|
T Consensus 77 ~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~~l 152 (296)
T PRK11559 77 LGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDA-PVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLM 152 (296)
T ss_pred cCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEc-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHH
Confidence 4567778889999977544332 24544443 2334332 2 1122223343 444433 688899999999
Q ss_pred hhcCC-eEEcCcccchhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 024121 159 GSVGK-IWRADEKLFDAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 233 (272)
Q Consensus 159 ~~~G~-~~~~~e~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 233 (272)
+.+|. .+++++......++++.+.+.. .+.|++. .+++.|+++++..+++..+..++..+-. ..+ .+.+.
T Consensus 153 ~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~-l~~~~Gi~~~~~~~~l~~~~~~s~~~~~---~~~-~~~~~ 227 (296)
T PRK11559 153 KAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALV-LATKAGVNPDLVYQAIRGGLAGSTVLDA---KAP-MVMDR 227 (296)
T ss_pred HHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCcccCHHHHh---hch-HhhcC
Confidence 99995 5777766555666666333333 2344443 5678999999999888766555443321 123 34455
Q ss_pred cCCCcchHHHHHH-------HHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 234 VASPGGTTIAGIH-------ELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 234 ~~~~~g~t~~~l~-------~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
.+.|+++.....+ ..++.++...+.++..+.++.+.+.
T Consensus 228 d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 272 (296)
T PRK11559 228 NFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKAD 272 (296)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 5677655433333 3456688888888888888877653
No 33
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.91 E-value=3.9e-22 Score=176.10 Aligned_cols=234 Identities=15% Similarity=0.138 Sum_probs=171.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
...++|+||| +|.||.+++..|.++|+ +|++| +|++. .+..+++.+||+||+|+|+....+
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~----~V~~~-d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~ 157 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGY----QVRIL-EQDDW-------------DRAEDILADAGMVIVSVPIHLTEE 157 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCC----eEEEe-CCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHH
Confidence 3568999998 99999999999999999 99999 98631 244567889999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhCCCCEEEEccCchhhh--cCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTGHSRFIRVMPNTPSAV--GEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~~~~~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
++.++.+ ++++++|+|+ ++++.. .+.+..+ .++++.||..+... ..+..++. .+..+++.++.+.++++.+
T Consensus 158 ~~~~l~~-l~~~~iv~Dv-~SvK~~~~~~~~~~~~-~~fvg~HPm~G~~~~~~~~~~vv~-~~~~~~~~~~~~~~l~~~l 233 (374)
T PRK11199 158 VIARLPP-LPEDCILVDL-TSVKNAPLQAMLAAHS-GPVLGLHPMFGPDVGSLAKQVVVV-CDGRQPEAYQWLLEQIQVW 233 (374)
T ss_pred HHHHHhC-CCCCcEEEEC-CCccHHHHHHHHHhCC-CCEEeeCCCCCCCCcccCCCEEEE-cCCCCchHHHHHHHHHHHC
Confidence 9999888 8899998887 444443 3444333 36899998654322 12222332 3334677889999999999
Q ss_pred CC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCCHHHHHHhc
Q 024121 162 GK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDV 234 (272)
Q Consensus 162 G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g----~~~~~~~~~~~~~~l~~~~ 234 (272)
|. ++++++++||..++++ .|++++. +++....+.+.+.+...++..++|.. +++++. .+|.+|.+..
T Consensus 234 G~~v~~~~~~~HD~~~a~vshLpH~~a~---al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~---~~p~lw~dI~ 307 (374)
T PRK11199 234 GARLHRISAVEHDQNMAFIQALRHFATF---AYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFA---QDPQLYADII 307 (374)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHc---CCHHHHHHHH
Confidence 95 5889999999999987 5555432 33333344788888888888888888 777764 5899999999
Q ss_pred CCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 235 ASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 235 ~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
.++.... +.++.+.++ .+...+. +.+.+.++++++
T Consensus 308 ~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~ 348 (374)
T PRK11199 308 MSSPENL-ALIKRYYQRFGEALELLEQGDKQAFIDSFRKVEH 348 (374)
T ss_pred HhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8887666 777776654 4444443 455555555543
No 34
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.91 E-value=2.2e-23 Score=163.75 Aligned_cols=151 Identities=25% Similarity=0.418 Sum_probs=113.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~~v~ 88 (272)
|+||||||+|+||++|+++|.++|| +|++| ||++++.+++.+.|+..+.++.|+++++|+||+|||+ +++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY----EVTVY-DRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT----EEEEE-ESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC----eEEee-ccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhh
Confidence 5899999999999999999999999 99999 9999999999999999999999999999999999987 5789999
Q ss_pred HH--hchhcCCCCEEEEEcCCCCHH---HHHHHhC--CCCEEEE-ccCchhhhcCCc-eEEEeCCCCCHHHHHHHHHHhh
Q 024121 89 MQ--IRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFG 159 (272)
Q Consensus 89 ~~--l~~~l~~~~~iis~~~~~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~~ll~ 159 (272)
.+ +.+.+.+++++|+++ +++++ .+++.+. +..++.. +.+.|.....|. +++..| +++.+++++++|+
T Consensus 76 ~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~ 151 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDMS-TISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLE 151 (163)
T ss_dssp HCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHH
T ss_pred hhhHHhhccccceEEEecC-CcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHHHH
Confidence 88 889999999999874 45544 3444442 3444432 223444455565 555554 7899999999999
Q ss_pred hcCCe-E-EcCc
Q 024121 160 SVGKI-W-RADE 169 (272)
Q Consensus 160 ~~G~~-~-~~~e 169 (272)
.+|.. + +++|
T Consensus 152 ~~~~~v~~~~G~ 163 (163)
T PF03446_consen 152 AMGKNVYHYVGP 163 (163)
T ss_dssp HHEEEEEEE-ES
T ss_pred HHhCCceeeeCc
Confidence 99964 5 4454
No 35
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.90 E-value=1.1e-21 Score=168.91 Aligned_cols=193 Identities=16% Similarity=0.157 Sum_probs=147.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhcc---CCEEEEeeCcc-cHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDivil~v~~~-~~~~ 86 (272)
|||||||+|+||++|+++|.++|+ +|.+| ||++++.+.+.+.|+..+.++.++++. +|+||+|+|+. ++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH----EVVGY-DRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 589999999999999999999999 99999 999999999988899888888888775 69999999987 7899
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCH--HHHHHHhC--CCCEEEEcc--CchhhhcCCceEEEeCCCCCHHHHHHHHHHhhh
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELIGKLFGS 160 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~--~~~~~~~~p--~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~ 160 (272)
+++++.+.+++++++|+++++.+. ..+.+.+. +..++. .| +.+.....|.+++..| +++.++.++++|+.
T Consensus 76 v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~ 151 (301)
T PRK09599 76 TIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLERGYCLMIGG---DKEAVERLEPIFKA 151 (301)
T ss_pred HHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHhcCCeEEecC---CHHHHHHHHHHHHH
Confidence 998888888899999988655442 23333332 344554 22 2344445666555443 78999999999999
Q ss_pred cCC----e-EEcCcccchhHHHchHHHHHHHHHHHHHH---HHHH--cCCCHHHHHHHHHHH
Q 024121 161 VGK----I-WRADEKLFDAITGLSGPAYIFLAIEALAD---GGVA--AGLPRELALGLASQT 212 (272)
Q Consensus 161 ~G~----~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~--~Gl~~~~a~~~~~~~ 212 (272)
++. . +++++......++++.+.+.+..+.++.| .+++ .|+|+++..+++..+
T Consensus 152 ~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~ 213 (301)
T PRK09599 152 LAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRG 213 (301)
T ss_pred HcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCC
Confidence 997 4 78888777777777644444443444433 3567 999999999999865
No 36
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.89 E-value=5.9e-21 Score=164.12 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=144.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhh---ccCCEEEEeeCcccHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV---EYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~aDivil~v~~~~~~~v 87 (272)
|||||||+|+||.+|+.+|.++|+ +|.+| ||++++.+.+.+.|+....++.++. .++|+||+|||++.++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v 75 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH----DCVGY-DHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAV 75 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHH
Confidence 589999999999999999999999 99999 9999999999887776666665543 468999999999999999
Q ss_pred HHHhchhcCCCCEEEEEcCCCCHH--HHHHHhC--CCCEEEEcc-CchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGVKLK--DLQEWTG--HSRFIRVMP-NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG 162 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~~~~--~l~~~~~--~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G 162 (272)
++++.+.++++++||+++++.+.. .+.+.+. +.+++.+.. +.+.....|..++..| +++.++.++++|+.++
T Consensus 76 ~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 76 LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhc
Confidence 999999999999999987665433 2222332 345555432 2233345566555544 7899999999999998
Q ss_pred C----eEEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHc--CCCHHHHHHHHHHHH
Q 024121 163 K----IWRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAA--GLPRELALGLASQTV 213 (272)
Q Consensus 163 ~----~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~--Gl~~~~a~~~~~~~~ 213 (272)
. .+++++......++++.+.+.+..+.++.| .+++. |+|+++..+++..+.
T Consensus 153 ~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 153 PEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred CcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence 4 477888777777777644444444444444 34565 579999999887653
No 37
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.89 E-value=1.2e-20 Score=170.08 Aligned_cols=192 Identities=13% Similarity=0.192 Sum_probs=144.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----C--ceeecCchhhhc---cCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVE---YSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~aDivil~v~~ 81 (272)
.+|||||+|+||++||.+|.++|| +|++| ||++++.+.+.+. | +..+.++.++++ ++|+||+||++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF----KISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 589999999999999999999999 99999 9999999888763 5 446778888876 58999999865
Q ss_pred -ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHH--HHhC--CCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHH
Q 024121 82 -QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ--EWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 82 -~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~--~~~~--~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
+.++++++++.+++.++++||+++++...+..+ +.+. +.+++.+. .+.+.....|.+++..| +++.++.++
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG---~~~a~~~~~ 153 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGG---NKEAYDHVK 153 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeC---CHHHHHHHH
Confidence 578999999999999999999987776554322 2221 34454421 22344445677655554 789999999
Q ss_pred HHhhhcC-C------eEEcCcccchhHHHchHHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q 024121 156 KLFGSVG-K------IWRADEKLFDAITGLSGPAYIFLAIEALADG---GV-AAGLPRELALGLAS 210 (272)
Q Consensus 156 ~ll~~~G-~------~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~-~~Gl~~~~a~~~~~ 210 (272)
++|+.++ + ++++++.....+++++.+.+.+..++++.|+ ++ +.|+++++..+++.
T Consensus 154 piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 154 DILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999998 5 4778988777788877444444444555443 44 69999999988874
No 38
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.88 E-value=7.6e-21 Score=164.73 Aligned_cols=194 Identities=18% Similarity=0.177 Sum_probs=147.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--------------ceeecCchhhh
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--------------VKVLSDNNAVV 69 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--------------~~~~~~~~~~~ 69 (272)
..+||+|||+|.||.+|+..|.++|+ +|++| ++++++.+++.+ .+ +..+.+..+++
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGL----QVVLI-DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh
Confidence 35789999999999999999999999 99999 999988766543 12 24456677778
Q ss_pred ccCCEEEEeeCccc--HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCC
Q 024121 70 EYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTA 146 (272)
Q Consensus 70 ~~aDivil~v~~~~--~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 146 (272)
++||+||+|||++. ..+++.++.+.++++++|+|.+++++...+++.++ ..++++.||+.|..... ...+++++..
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-l~~i~~g~~t 156 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIP-LVEVVRGDKT 156 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCc-eEEEeCCCCC
Confidence 99999999998874 67788888887777778878889999988888775 36799999998877655 4456677778
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024121 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQT 212 (272)
Q Consensus 147 ~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~ 212 (272)
+++.++.++++|+.+|+. ++++.+.... +....+...+.|++. .+.+.|+++++..+++..+
T Consensus 157 ~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~~~~~Ea~~-l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 157 SPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQHALAREAIS-LLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhc
Confidence 999999999999999975 6665432222 112223334445544 4567778999988887644
No 39
>PLN02858 fructose-bisphosphate aldolase
Probab=99.88 E-value=1.3e-20 Score=188.02 Aligned_cols=248 Identities=17% Similarity=0.131 Sum_probs=177.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~v 87 (272)
..++|||||+|+||.+|+.+|+++|+ +|++| ||++++.+.+.+.|+....++.+++++||+||+||| +++++++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~V 397 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF----SVCGY-DVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENV 397 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHH
Confidence 35789999999999999999999999 99999 999999999988888777888999999999999998 6778888
Q ss_pred HH---HhchhcCCCCEEEEEcCCCCHH---HHHHHhC----CCCEEEE-ccCchhhhcCCc-eEEEeCCCCCHHHHHHHH
Q 024121 88 AM---QIRPLLSRKKLLVSVAAGVKLK---DLQEWTG----HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIG 155 (272)
Q Consensus 88 ~~---~l~~~l~~~~~iis~~~~~~~~---~l~~~~~----~~~~~~~-~p~~~~~~~~g~-~~~~~~~~~~~~~~~~v~ 155 (272)
+. ++.+.+++++++|+++ +++++ .+.+.+. +..++.. +.+.|.....|. ++++.| +++.+++++
T Consensus 398 l~g~~g~~~~l~~g~ivVd~S-TvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~ 473 (1378)
T PLN02858 398 LFGDLGAVSALPAGASIVLSS-TVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAG 473 (1378)
T ss_pred HhchhhHHhcCCCCCEEEECC-CCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHHH
Confidence 73 4666678999999874 45544 3433332 2233332 123344445554 445554 688999999
Q ss_pred HHhhhcCCe-EE-cCcccchhHHHchHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 024121 156 KLFGSVGKI-WR-ADEKLFDAITGLSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 229 (272)
Q Consensus 156 ~ll~~~G~~-~~-~~e~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 229 (272)
++|+.+|+. ++ .++......++++.+.+.. .+.|++. .+++.|+|++.+++++..+...+..+ .. ..+ .
T Consensus 474 plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~-la~k~Gld~~~l~evl~~s~g~s~~~-~~--~~~-~ 548 (1378)
T PLN02858 474 SVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMA-FGARLGLNTRKLFDIISNAGGTSWMF-EN--RVP-H 548 (1378)
T ss_pred HHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhhcccChhh-hh--ccc-h
Confidence 999999954 55 4566667777776333333 3344443 46799999999999998876655433 21 233 4
Q ss_pred HHHhcCCCcchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhh
Q 024121 230 LKDDVASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSRE 270 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~-------l~~~~~~~~~~~~~~~~~~r~~~ 270 (272)
+.+..++|++......+. .++.++...+.++..+.|+.+.+
T Consensus 549 ~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~ 596 (1378)
T PLN02858 549 MLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSA 596 (1378)
T ss_pred hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 555667787766555444 35557777788888888877654
No 40
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.88 E-value=3.2e-20 Score=169.70 Aligned_cols=193 Identities=17% Similarity=0.131 Sum_probs=147.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhh
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAV 68 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~ 68 (272)
..|||+|||+|.||++||.+|+++|+ +|++| |+++++.+.+.+ .| +..++++.++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~----~V~v~-D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea 77 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGI----DVAVF-DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEA 77 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHH
Confidence 45799999999999999999999999 99999 999988765421 12 5667788888
Q ss_pred hccCCEEEEeeCccc-H-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCC
Q 024121 69 VEYSDVVVFSVKPQV-V-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGT 145 (272)
Q Consensus 69 ~~~aDivil~v~~~~-~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~ 145 (272)
+++||+||.|+|++. + ..++.++.+.++++.+|.|.+++++...+++.+. ..+++..||+.|..... ...+++++.
T Consensus 78 ~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~-Lvevv~g~~ 156 (495)
T PRK07531 78 VAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLP-LVELVGGGK 156 (495)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCc-eEEEcCCCC
Confidence 999999999998774 4 4566778777778878888888998888887765 35788899988876543 445677878
Q ss_pred CCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024121 146 ATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFL-AIEALADGGVAAGLPRELALGLASQT 212 (272)
Q Consensus 146 ~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~Gl~~~~a~~~~~~~ 212 (272)
++++.++.++++++.+|+. ++++. ..+.+.+ +.++.. +.|++. .+.+.|+++++..+++..+
T Consensus 157 t~~e~~~~~~~~~~~lG~~~v~~~k-~~~gfi~---nrl~~a~~~EA~~-L~~~g~~s~~~id~~~~~g 220 (495)
T PRK07531 157 TSPETIRRAKEILREIGMKPVHIAK-EIDAFVG---DRLLEALWREALW-LVKDGIATTEEIDDVIRYS 220 (495)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeecC-CCcchhH---HHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhhc
Confidence 8899999999999999976 66543 2333332 222233 355554 4567889999998888766
No 41
>PLN02712 arogenate dehydrogenase
Probab=99.87 E-value=1.5e-20 Score=176.24 Aligned_cols=243 Identities=13% Similarity=0.113 Sum_probs=171.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivil~v~~~~~~~ 86 (272)
.+.|||||||+|+||.+++++|.+.|+ +|++| +|+... +...+.|+....+..+++. .+|+||+|||+..+.+
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~ 440 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGH----TVLAY-SRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEK 440 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcC----EEEEE-ECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHH
Confidence 356899999999999999999999998 99999 998653 4455578776667777665 5899999999999999
Q ss_pred HHHHhch-hcCCCCEEEEEcCC--CCHHHHHHHhC-CCCEEEEccCchhhhc-CC---ce-----EEEeCCCCCHHHHHH
Q 024121 87 VAMQIRP-LLSRKKLLVSVAAG--VKLKDLQEWTG-HSRFIRVMPNTPSAVG-EA---AT-----VMSLGGTATEEDGEL 153 (272)
Q Consensus 87 v~~~l~~-~l~~~~~iis~~~~--~~~~~l~~~~~-~~~~~~~~p~~~~~~~-~g---~~-----~~~~~~~~~~~~~~~ 153 (272)
++.++.. .++++++|+|++++ ...+.+++.++ +.++++.||+.+...+ .| .. .++.++....+..+.
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~ 520 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDS 520 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHH
Confidence 9988865 57789999988554 34456666665 4579999998765543 22 11 112222223445566
Q ss_pred HHHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hcCCCHHH
Q 024121 154 IGKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVT-KSGKHPGQ 229 (272)
Q Consensus 154 v~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~-~~~~~~~~ 229 (272)
+.++|+.+|. .++++.++||.+++.+ .|+.+. ....+.|++. ..+...+|.....++. ..+.+|..
T Consensus 521 l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla-------~~L~~~~~~~---~~~~~~gfr~l~~Li~Ria~~~p~l 590 (667)
T PLN02712 521 FLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMG-------RLLEKLGLES---TPINTKGYETLLNLVENTAGDSFDL 590 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHH-------HHHHHCCCcc---cccccHHHHHHHHHHHhhcCCCHHH
Confidence 7799999994 5889999999988876 444322 2334566542 3445566666654432 23468999
Q ss_pred HHHhcCCCcchHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Q 024121 230 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAKR 267 (272)
Q Consensus 230 l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~~~~~~~~r 267 (272)
|.+....+... .+.++.+++. .++..+..-+...+++
T Consensus 591 ~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~~~~~~~~~~ 629 (667)
T PLN02712 591 YYGLFMYNVNA-MEQLERLDLAFESLKKQLFGRLHGVLRK 629 (667)
T ss_pred HHHHHHHChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887666 6777777664 6666666666666443
No 42
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.87 E-value=2.4e-20 Score=162.83 Aligned_cols=237 Identities=12% Similarity=0.107 Sum_probs=162.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
...+||+|||+ |.||.++++.|.+. ++ +|++| |++.+ ...++.+.+.+||+||+|||...+.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~----~V~g~-D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~ 65 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQL----EVIGH-DPADP-----------GSLDPATLLQRADVLIFSAPIRHTA 65 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCC----EEEEE-cCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHH
Confidence 34689999999 99999999999974 66 89999 88521 1235567789999999999999999
Q ss_pred HHHHHhchh---cCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhh---cCCc-eEEEeCCCCCHHHHHHHHHH
Q 024121 86 DVAMQIRPL---LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV---GEAA-TVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 86 ~v~~~l~~~---l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~---~~g~-~~~~~~~~~~~~~~~~v~~l 157 (272)
++++++.++ ++++++|+|+ ++++...++...+ +.++++.||....+. .++. .++++. ...+..+.++++
T Consensus 66 ~~l~~l~~~~~~l~~~~iVtDV-gSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~~~~v~~l 142 (370)
T PRK08818 66 ALIEEYVALAGGRAAGQLWLDV-TSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHWSPWVQSL 142 (370)
T ss_pred HHHHHHhhhhcCCCCCeEEEEC-CCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhHHHHHHHH
Confidence 999998875 6888877776 5666665555544 357999998753321 1333 445544 244557889999
Q ss_pred hhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHH-HH---HHHHHhcCCCH
Q 024121 158 FGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGL---PRELALGLASQTVL-GA---ASMVTKSGKHP 227 (272)
Q Consensus 158 l~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl---~~~~a~~~~~~~~~-g~---~~~~~~~~~~~ 227 (272)
++.+|. +++++.++||.+++.+ .+++.+..+..+.. .... +......+...+|+ ++ ++++. .+|
T Consensus 143 ~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~---~~~~~~~~~~~~~~f~~~gFr~d~t~iTRIAs---s~P 216 (370)
T PRK08818 143 CSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLR---DYAPLLGELRALMPYRSASFELDTAVIARILS---LNP 216 (370)
T ss_pred HHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhhhhhccccchhhHHHhhhcchhhc---CCH
Confidence 999994 5889999999999987 56655443333321 1111 11111245556666 33 45553 589
Q ss_pred HHHHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHH---HHHHhh
Q 024121 228 GQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAA---AKRSRE 270 (272)
Q Consensus 228 ~~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~---~~r~~~ 270 (272)
.+|.+...++. ...+.++.+.+. .+...+. +++... ++++++
T Consensus 217 ~mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~ 267 (370)
T PRK08818 217 SIYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANA 267 (370)
T ss_pred HHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999988 777777777664 4444443 344555 555554
No 43
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.87 E-value=6.5e-20 Score=165.38 Aligned_cols=191 Identities=15% Similarity=0.168 Sum_probs=142.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeecCchhhh---ccCCEEEEeeCc-c
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVV---EYSDVVVFSVKP-Q 82 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~aDivil~v~~-~ 82 (272)
+|||||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+. ++..+.++.+++ +++|+||+|||+ .
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~----~V~v~-drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF----TVSVY-NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcH
Confidence 48999999999999999999999 99999 9999999988864 255666777765 468999999987 5
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCHHHH--HHHhC--CCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHHHH
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL--QEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l--~~~~~--~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~l 157 (272)
.++++++++.+++.++++||+++++...+.. .+.+. +.+++.+. .+.+.....|.+++..| +++.++.++++
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG---~~~a~~~~~p~ 152 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGG---SAEAWPLVAPI 152 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCC---CHHHHHHHHHH
Confidence 7899999999999999999998765544322 22222 34455432 12334445676555433 78999999999
Q ss_pred hhhcC-C------eEEcCcccchhHHHchHHHHHHHHHHHHHHH---H-HHcCCCHHHHHHHHH
Q 024121 158 FGSVG-K------IWRADEKLFDAITGLSGPAYIFLAIEALADG---G-VAAGLPRELALGLAS 210 (272)
Q Consensus 158 l~~~G-~------~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~Gl~~~~a~~~~~ 210 (272)
|+.++ + .+++++.....+++++.+.+.+..++++.|+ + .+.|+++++..+++.
T Consensus 153 L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 153 FQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred HHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99998 4 2678988888888887444445555555554 3 369999999988883
No 44
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=99.86 E-value=7.2e-21 Score=138.03 Aligned_cols=105 Identities=57% Similarity=0.896 Sum_probs=97.1
Q ss_pred cCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHH
Q 024121 167 ADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 244 (272)
Q Consensus 167 ~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~ 244 (272)
++|++++.+++++ +|+|++.+++++.+++.+.|++++++++++.+++.|+..++.+++.+|..+++.+++|||+|+++
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~g 80 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAG 80 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHH
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHH
Confidence 4688999999988 99999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024121 245 IHELEKSGFRGILMNAVVAAAKRSREL 271 (272)
Q Consensus 245 l~~l~~~~~~~~~~~~~~~~~~r~~~~ 271 (272)
++.|++++|+..+.++++++++|++||
T Consensus 81 l~~L~~~~~~~~~~~a~~aa~~R~~el 107 (107)
T PF14748_consen 81 LEVLEKGGLRAAIMEALEAAVERAKEL 107 (107)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999986
No 45
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.86 E-value=2.1e-19 Score=155.41 Aligned_cols=216 Identities=15% Similarity=0.087 Sum_probs=153.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeecCch
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSDNN 66 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~ 66 (272)
|+|+|||+|.||++|+..|.++|+ +|++| +|+++..+.. .+.| +..+.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~----~V~v~-d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~ 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH----EVRLW-DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLA 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC----eeEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHH
Confidence 689999999999999999999999 99999 9998766542 2334 25667777
Q ss_pred hhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeC
Q 024121 67 AVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLG 143 (272)
Q Consensus 67 ~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~ 143 (272)
++++++|+|+.|+|.+ ....++.++.+..+++.++.+.+++.....+++.+. ...++..||..|.... ....++++
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~-~lveiv~~ 156 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI-PVVEVVPA 156 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC-ceEEEeCC
Confidence 8889999999999876 345666777666666666667667777777887765 2457788887665332 24456777
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q 024121 144 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK 222 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~ 222 (272)
..++++.++.++++++.+|+. ++++++..+.+ +...+...+.|++. .+.+.|+++++..+++..++..++.+
T Consensus 157 ~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i---~nrl~~a~~~EA~~-l~~~g~~~~~~id~~~~~~~g~~~~~--- 229 (308)
T PRK06129 157 PWTAPATLARAEALYRAAGQSPVRLRREIDGFV---LNRLQGALLREAFR-LVADGVASVDDIDAVIRDGLGLRWSF--- 229 (308)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCCccHH---HHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhccCCCccC---
Confidence 778999999999999999965 77776554432 12223344556654 56788899999998887665443222
Q ss_pred cCCCHHHHHHhcCCCcchHH
Q 024121 223 SGKHPGQLKDDVASPGGTTI 242 (272)
Q Consensus 223 ~~~~~~~l~~~~~~~~g~t~ 242 (272)
..|-.+.+. ++|+|...
T Consensus 230 --~gp~~~~d~-~~~~g~~~ 246 (308)
T PRK06129 230 --MGPFETIDL-NAPGGVAD 246 (308)
T ss_pred --cCHHHHHhc-cccccHHH
Confidence 235455553 45655443
No 46
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.84 E-value=1.5e-18 Score=148.33 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=127.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-----------HHHHcC-------------ceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----------AFESIG-------------VKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-----------~l~~~g-------------~~~~~~ 64 (272)
+++||+|||+|.||.+++..+.++|+ +|++| |+++++++ .+.+.| +..+.+
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGY----DVVMV-DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 99998774 233333 344555
Q ss_pred chhhhccCCEEEEeeCcccH--HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQVV--KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~~~--~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
.+ .+++||+||+|+|++.. .+++.++.++++++++++|.+++++...+++.++ ..++++.||+.|.....+.. ++
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~ 154 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVE-II 154 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEE-Ee
Confidence 54 47899999999987643 5888999998989998889899999999988875 35899999999988877775 66
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
++..++++..+.+.++++.+|+. +++.+
T Consensus 155 ~g~~t~~e~~~~~~~l~~~lGk~pv~~~d 183 (282)
T PRK05808 155 RGLATSDATHEAVEALAKKIGKTPVEVKN 183 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 78889999999999999999976 65543
No 47
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.83 E-value=2.6e-18 Score=149.29 Aligned_cols=208 Identities=21% Similarity=0.196 Sum_probs=145.0
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceeecCc
Q 024121 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSDN 65 (272)
Q Consensus 11 ~~IgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~~~~ 65 (272)
|||.+.|+||- |.+||.+|.++|| +|++| +|+++ +.+.+.+.|+.++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~----~V~v~-Dr~~~~l~~~~~~~l~~~Gi~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH----DVVLA-EPNRSILSEELWKKVEDAGVKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC----eEEEE-ECCHHHhhHHHHHHHHHCCCEEeCCH
Confidence 68889998874 7899999999999 99999 99987 4455666888888888
Q ss_pred hhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHH----HHHHHhC-CCCEEEEccCchhhh----cC
Q 024121 66 NAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLK----DLQEWTG-HSRFIRVMPNTPSAV----GE 135 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~----~l~~~~~-~~~~~~~~p~~~~~~----~~ 135 (272)
.++++++|+||+|+|+.. +++++.++.++++++++|++++++ +.. .+++.++ ..+.+++++.+|..+ ..
T Consensus 76 ~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g 154 (342)
T PRK12557 76 AEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQH 154 (342)
T ss_pred HHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHHHHHHHHHHHhcccccccCeeecCCccccccccc
Confidence 888999999999999887 899999999999899999987554 443 3444443 123344444444322 33
Q ss_pred CceEEEeC-----CCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HHHHcCCCHH-HH
Q 024121 136 AATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GGVAAGLPRE-LA 205 (272)
Q Consensus 136 g~~~~~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~Gl~~~-~a 205 (272)
+.++++.+ ...+++.+++++++|+.+|.. +++++ .....+++..+.+......++.+ .+++.|.+++ .+
T Consensus 155 ~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~ 233 (342)
T PRK12557 155 GHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMI 233 (342)
T ss_pred hheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 44555422 234788899999999999964 66665 33333333322222222333333 3567776654 45
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 024121 206 LGLASQTVLGAASMVTKSGK 225 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~ 225 (272)
.+++.+++.+++.++.+++.
T Consensus 234 ~~~~~~~~~~~a~l~~~~~~ 253 (342)
T PRK12557 234 EKQILMTLQTMASLVETSGV 253 (342)
T ss_pred HHHHHHHHHHHHHHHHHhCh
Confidence 66889999999999876543
No 48
>PLN02712 arogenate dehydrogenase
Probab=99.83 E-value=2e-18 Score=161.97 Aligned_cols=236 Identities=16% Similarity=0.154 Sum_probs=159.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhh-ccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDivil~v~~~~~~~v~ 88 (272)
.|+|+|||+|+||.+++++|.+.|+ +|++| +|+... +...+.|+....+..+++ .++|+||+|||++.+.+++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl 125 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGH----TVLAH-SRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVL 125 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHH
Confidence 4799999999999999999999998 99999 998543 445557887777777755 5699999999999999999
Q ss_pred HHhc-hhcCCCCEEEEEcCCCCH---HHHHHHhC-CCCEEEEccCchhhhc----CCceEEEe----CC-CCCHHHHHHH
Q 024121 89 MQIR-PLLSRKKLLVSVAAGVKL---KDLQEWTG-HSRFIRVMPNTPSAVG----EAATVMSL----GG-TATEEDGELI 154 (272)
Q Consensus 89 ~~l~-~~l~~~~~iis~~~~~~~---~~l~~~~~-~~~~~~~~p~~~~~~~----~g~~~~~~----~~-~~~~~~~~~v 154 (272)
.++. ++++++++|+|+. +++. +.+.+.++ +.++++.||....... .+...++. +. ....+..+.+
T Consensus 126 ~~l~~~~l~~g~iVvDv~-SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (667)
T PLN02712 126 KSLPLQRLKRNTLFVDVL-SVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSF 204 (667)
T ss_pred HhhhhhcCCCCeEEEECC-CCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHH
Confidence 9886 5678899888874 4443 34555555 4579999997533211 22223332 11 1123446677
Q ss_pred HHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 024121 155 GKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLP---RELALGLASQTVLGAASMVTKSGKHPG 228 (272)
Q Consensus 155 ~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~---~~~a~~~~~~~~~g~~~~~~~~~~~~~ 228 (272)
+++|+.+|. .+.++.++||.+++.+ .|+++...+..+.. ....+. .+..++++ .+++ +.+|.
T Consensus 205 ~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~--~~~~~~~~~~~~~l~l~-------~Ria---~~~p~ 272 (667)
T PLN02712 205 LEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKL--ESTPINTKGYESLLDLV-------ENTC---GDSFD 272 (667)
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCCccHHHHHHHH-------HHHh---cCCHH
Confidence 899999994 5889999999999887 67665543321110 001111 22222222 4444 35899
Q ss_pred HHHHhcCCCcchHHHHHHHHHhC--CHHHHHHHHHHHHH
Q 024121 229 QLKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAA 265 (272)
Q Consensus 229 ~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~~~~~~~ 265 (272)
.|.+.+..+. ...+.++.+++. .++..|..-++.-+
T Consensus 273 L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 310 (667)
T PLN02712 273 LYYGLFMYNK-NSLEMLERLDLAFEALRKQLFGRLHGVV 310 (667)
T ss_pred HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887 777788887765 55555554444433
No 49
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.83 E-value=2.7e-18 Score=147.64 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=123.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC------------ceeecC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG------------VKVLSD 64 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g------------~~~~~~ 64 (272)
+..+||+|||+|.||.+|+..|+++|+ +|++| |+++++++. +.+.| .....+
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAAAGM----DVWLL-DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 456789999999999999999999999 99999 999987653 22222 122334
Q ss_pred chhhhccCCEEEEeeC--cccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCC-CCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVK--PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~--~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
..+.+++||+||+|+| ++....++.++.+.++++++|+|.++++++..+++.+.+ .++++.|+..|..... .+.++
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~-lveiv 155 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMK-LVEII 155 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCc-eEEEe
Confidence 4567899999999998 556677788888888888888888899999998887763 6789998877665443 34566
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
++..++++..+.++++|+.+|+. +++.+
T Consensus 156 ~g~~t~~e~~~~~~~ll~~lG~~~~~~~d 184 (295)
T PLN02545 156 RGADTSDEVFDATKALAERFGKTVVCSQD 184 (295)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 77788999999999999999976 55544
No 50
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.82 E-value=3.3e-18 Score=149.16 Aligned_cols=148 Identities=19% Similarity=0.254 Sum_probs=114.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeecCchhhhccCCEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiv 75 (272)
||||+|||+|.||++|+..|.++|+ +|++| +|++++.+.+.+. ++....+..++++++|+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 75 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGH----DVTLW-ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLI 75 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEE
Confidence 3699999999999999999999999 99999 9999888887764 355566777788899999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-------HHHHHHhCC--CCEEEEccCchhhhcCCc--eEEEeCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGH--SRFIRVMPNTPSAVGEAA--TVMSLGG 144 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-------~~l~~~~~~--~~~~~~~p~~~~~~~~g~--~~~~~~~ 144 (272)
|+|||++++++++.++.+.+.+++++|++++|++. +.+++.++. ...+...|+.+.....+. ..+..+
T Consensus 76 i~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~- 154 (325)
T PRK00094 76 LVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIAS- 154 (325)
T ss_pred EEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEe-
Confidence 99999999999999999888889999999888765 334444442 123445677665544442 223333
Q ss_pred CCCHHHHHHHHHHhhhcCCe
Q 024121 145 TATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~ 164 (272)
.+.+..+.+.++|+..|..
T Consensus 155 -~~~~~~~~~~~~l~~~~~~ 173 (325)
T PRK00094 155 -TDEELAERVQELFHSPYFR 173 (325)
T ss_pred -CCHHHHHHHHHHhCCCCEE
Confidence 3678899999999998854
No 51
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.82 E-value=4.8e-19 Score=149.11 Aligned_cols=224 Identities=21% Similarity=0.240 Sum_probs=157.9
Q ss_pred HHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 25 IAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 25 la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
+|+.|.++|+ ..+|+.| |++++..+...+.|+.-. .+..+.+.++|+||+|||+..+.+++.++.++++++++|++
T Consensus 1 ~A~aL~~~g~--~~~v~g~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 1 IALALRKAGP--DVEVYGY-DRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHTTT--TSEEEEE--SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE
T ss_pred ChHHHHhCCC--CeEEEEE-eCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEE
Confidence 5788999983 1288999 999999888877776422 22257789999999999999999999999999999998888
Q ss_pred EcCCCCHH---HHHHHhC-CCCEEEEccCchh-----------hhcCCceEEEeCCCCCHHHHHHHHHHhhhcC-CeEEc
Q 024121 104 VAAGVKLK---DLQEWTG-HSRFIRVMPNTPS-----------AVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRA 167 (272)
Q Consensus 104 ~~~~~~~~---~l~~~~~-~~~~~~~~p~~~~-----------~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G-~~~~~ 167 (272)
+ ++++.. .+++.++ +.++++.||.... .......++++....+++..+.++.+++.+| +.+++
T Consensus 78 v-~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 78 V-GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp ---S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred e-CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 7 455543 4555555 5789999986432 1123345677777777889999999999999 45889
Q ss_pred CcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHH
Q 024121 168 DEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 245 (272)
Q Consensus 168 ~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l 245 (272)
+.+.||..++.+ .|+++.. ++.....+.+.+......+...+|+.+++++. .+|..|.+....+.....+.+
T Consensus 157 ~~eeHD~~~A~vshlpH~~a~---al~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~l~~~I~~~N~~~~~~~l 230 (258)
T PF02153_consen 157 DAEEHDRIMAYVSHLPHLLAS---ALANTLAELSSDDPDILRLAGGGFRDMTRIAS---SDPELWADIFLSNPENLLEAL 230 (258)
T ss_dssp -HHHHHHHHHHHTHHHHHHHH---HHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG---S-HHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHhhcchhHHhhccccc---CChHHHHHHHHHCHHHHHHHH
Confidence 999999999987 7776554 33333333444456677888888998887754 589999999888877677888
Q ss_pred HHHHhC--CHHHHHH
Q 024121 246 HELEKS--GFRGILM 258 (272)
Q Consensus 246 ~~l~~~--~~~~~~~ 258 (272)
+.+.+. .++..+.
T Consensus 231 ~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 231 DEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877665 4444443
No 52
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=5.5e-18 Score=145.54 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=122.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceee
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVL 62 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~ 62 (272)
+++.+||+|||+|.||.+|+..|.++|+ +|++| ++++++++.+.+ .| +...
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 75 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGY----DVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA 75 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee
Confidence 3567899999999999999999999999 99999 999987765332 12 3445
Q ss_pred cCchhhhccCCEEEEeeCcc-c-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceE
Q 024121 63 SDNNAVVEYSDVVVFSVKPQ-V-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATV 139 (272)
Q Consensus 63 ~~~~~~~~~aDivil~v~~~-~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~ 139 (272)
.+. +.+++||+||.|+|.+ + .+.++.++.+.++++++++|.+++++...+++.+. ..++++.|+..|.....+. .
T Consensus 76 ~~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~v-e 153 (292)
T PRK07530 76 TDL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLV-E 153 (292)
T ss_pred CCH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceE-E
Confidence 555 4578999999999865 3 45777888888889999998888898888887664 3567888876666555444 4
Q ss_pred EEeCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 140 MSLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 140 ~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+..+..++++.++.+.++++.+|+. ++..+
T Consensus 154 i~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 154 LIRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 5667778999999999999999975 65544
No 53
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=1.5e-17 Score=142.45 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=138.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------------cCceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------------IGVKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------------~g~~~~~ 63 (272)
..+||+|||+|.||.+||..|..+|+ +|++| ++++++++++.+ .++..+.
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGF----DVTIY-DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTT 76 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeC
Confidence 45799999999999999999999999 99999 999876554432 1334567
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+..++++++|+||.|+|.+ ...+++.++.+.+++++++++.+++++...+.+.+. ..++++.||..|... .....+
T Consensus 77 d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~-~~lvev 155 (287)
T PRK08293 77 DLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWK-NNTAEI 155 (287)
T ss_pred CHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCc-CCeEEE
Confidence 7778889999999999865 567888888888888888878778888877777665 357899998777542 344556
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGL-PRELALGLA 209 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl-~~~~a~~~~ 209 (272)
++++.++++.++.+.++++.+|+. +.+..+.++.+..-. +...+.|++. ....|+ ++++...++
T Consensus 156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi---~~~~~~ea~~--l~~~g~a~~~~iD~a~ 221 (287)
T PRK08293 156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSL---LVPFLSAALA--LWAKGVADPETIDKTW 221 (287)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHH---HHHHHHHHHH--HHHcCCCCHHHHHHHH
Confidence 677888999999999999999975 666655444443211 1112223332 334564 566655444
No 54
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.80 E-value=2e-18 Score=142.14 Aligned_cols=151 Identities=24% Similarity=0.341 Sum_probs=119.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------Cc--ee-ecCchhhhccCCEEEEe
Q 024121 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------GV--KV-LSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------g~--~~-~~~~~~~~~~aDivil~ 78 (272)
|||+||| +|+||++++..|.++|+ +|.+| +|++++.+.+.+. |+ .+ ..+..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~----~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN----KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC----EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence 6899997 89999999999999999 99999 9999887766541 22 12 23556778999999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-----------------HHHHHHhCC-CCEEEEccCchhhhcC-----
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-----------------KDLQEWTGH-SRFIRVMPNTPSAVGE----- 135 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-----------------~~l~~~~~~-~~~~~~~p~~~~~~~~----- 135 (272)
+|++++.+++.++.+.+. +++|||+++|++. +.+++.+++ .++++++|+.+.....
T Consensus 76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~ 154 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDE 154 (219)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCC
Confidence 999999999998877664 5899999999876 557788876 7899999988765432
Q ss_pred -CceEEEeCCCCCHHHHHHHHHHhhhc-CC-eEEcCc
Q 024121 136 -AATVMSLGGTATEEDGELIGKLFGSV-GK-IWRADE 169 (272)
Q Consensus 136 -g~~~~~~~~~~~~~~~~~v~~ll~~~-G~-~~~~~e 169 (272)
+...+++|+ +++..+.+..+.+.+ |. .+..+.
T Consensus 155 ~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 155 VDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred CCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 233455664 577889999999999 84 465554
No 55
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.80 E-value=1.6e-17 Score=142.59 Aligned_cols=154 Identities=18% Similarity=0.271 Sum_probs=124.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------cC-------------cee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IG-------------VKV 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------~g-------------~~~ 61 (272)
+.+||+|||+|.||.+|+..|.++|+ +|++| |++++.+++..+ .| +..
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 76 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGY----DVTIV-DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT 76 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe
Confidence 45789999999999999999999999 99999 999987654221 12 123
Q ss_pred ecCchhhhccCCEEEEeeCccc--HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCce
Q 024121 62 LSDNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAAT 138 (272)
Q Consensus 62 ~~~~~~~~~~aDivil~v~~~~--~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~ 138 (272)
..+. +.+++||+||+|+|++. ..+++.++.+.++++++++|.+++++...+++.+. ..++++.|+..|.....+..
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE 155 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE 155 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE
Confidence 3343 56789999999998774 57788888888888999999999999999988775 36799999998887766655
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 139 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+ ..+..++++.++.+.++++.+|+. +++.+
T Consensus 156 v-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d 186 (291)
T PRK06035 156 V-VRAALTSEETFNTTVELSKKIGKIPIEVAD 186 (291)
T ss_pred E-eCCCCCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 4 478888999999999999999976 66654
No 56
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.80 E-value=1.8e-17 Score=144.67 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=132.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------C------ceeecCchhhhccCCE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------G------VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~aDi 74 (272)
++|||+|||+|+||++|+..|.++|+ +|++| +|++++.+.+.+. | +..+.++.++++++|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~----~V~~~-~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGV----PVRLW-ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 46799999999999999999999999 99999 9999888777653 3 3455677788899999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCC-----HHHHHHHhCC---CC-EEEEccCchhhhcCCc--eEEEeC
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-----LKDLQEWTGH---SR-FIRVMPNTPSAVGEAA--TVMSLG 143 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~-----~~~l~~~~~~---~~-~~~~~p~~~~~~~~g~--~~~~~~ 143 (272)
||+|||+++++++++.+ +++.++|++++|+. ...+.+.++. .. .+...|+.+...+.+. ..+..+
T Consensus 78 Vi~~v~~~~~~~v~~~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~ 153 (328)
T PRK14618 78 AVVAVPSKALRETLAGL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVAS 153 (328)
T ss_pred EEEECchHHHHHHHHhc----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEe
Confidence 99999999988888654 46778999988875 3455555421 22 3456788777765543 222223
Q ss_pred CCCCHHHHHHHHHHhhhcCCeEEcCcccch----------------hHHHch--HHHHHHHHHHHHHH---HHHHcCCCH
Q 024121 144 GTATEEDGELIGKLFGSVGKIWRADEKLFD----------------AITGLS--GPAYIFLAIEALAD---GGVAAGLPR 202 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~----------------~~~~~~--~~~~~~~~~~~l~~---~~~~~Gl~~ 202 (272)
.+++..+.++++|+..|..++.+++... ....+. .+.....+..++.| .+++.|+++
T Consensus 154 --~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~ 231 (328)
T PRK14618 154 --PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEE 231 (328)
T ss_pred --CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3788899999999999965444433221 111111 11222223333333 467899999
Q ss_pred HHHHHHHH
Q 024121 203 ELALGLAS 210 (272)
Q Consensus 203 ~~a~~~~~ 210 (272)
++++++..
T Consensus 232 ~~~~~~~~ 239 (328)
T PRK14618 232 ATFYGLSG 239 (328)
T ss_pred cchhcCcc
Confidence 99988754
No 57
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.79 E-value=6.2e-19 Score=126.22 Aligned_cols=93 Identities=34% Similarity=0.637 Sum_probs=80.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeec-CchhhhccCCEEEEeeCcccHHHHH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLS-DNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~-~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
||||||+|+||++|+++|.++|+ .+.+|. ++ +|++++.+++.+ .++.+.. ++.++++++|+||+||||+++.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~~~~v~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-KPHEVIIVS-SRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS--GGEEEEEE-ESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CceeEEeec-cCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHH
Confidence 79999999999999999999994 444998 55 999999999876 6777665 7899999999999999999999999
Q ss_pred HHhchhcCCCCEEEEEcCC
Q 024121 89 MQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~~ 107 (272)
.++ +...+++++||+++|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 999 667899999999875
No 58
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.78 E-value=8.8e-17 Score=137.80 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=122.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c-----------------CceeecCch
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-----------------GVKVLSDNN 66 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~ 66 (272)
+||+|||+|.||.+||..|.++|+ +|++| |+++++++++.+ . ++..+.+..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF----QTTLV-DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence 589999999999999999999999 99999 999988776542 1 234566777
Q ss_pred hhhccCCEEEEeeCccc-H-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCC-CCEEEEccCchhhhcCCceEEEeC
Q 024121 67 AVVEYSDVVVFSVKPQV-V-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLG 143 (272)
Q Consensus 67 ~~~~~aDivil~v~~~~-~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~~~~~ 143 (272)
+++++||+||.|+|.+. + ..++.++.+.+++++++++.++++++..+.+.+.. .++++.|+..|.... ....++++
T Consensus 77 ~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~-~Lve~v~g 155 (288)
T PRK09260 77 AAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKM-KLVELIRG 155 (288)
T ss_pred HhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccC-ceEEEeCC
Confidence 88999999999998764 3 46677788888888877777788999888877653 457788877676543 35556778
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 144 GTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+.++++.++.++++++.+|+. +++++
T Consensus 156 ~~t~~~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 156 LETSDETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 888999999999999999965 66664
No 59
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.77 E-value=1.9e-16 Score=142.50 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeecCchhhhcc---CCEEEEeeCcc-cHHHHHHHh
Q 024121 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKDVAMQI 91 (272)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---aDivil~v~~~-~~~~v~~~l 91 (272)
||+.|+++|+++|| +|.+| ||++++.+.+.+. |+..+.++.++++. +|+||+|||.. .+++|++++
T Consensus 1 MG~~mA~nL~~~G~----~V~v~-nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l 75 (459)
T PRK09287 1 MGKNLALNIASHGY----TVAVY-NRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQL 75 (459)
T ss_pred CcHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHH
Confidence 89999999999999 99999 9999999999873 47888899998874 89999999865 689999999
Q ss_pred chhcCCCCEEEEEcCCCCHHHH--HHHhC--CCCEEEE-ccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcC-Ce-
Q 024121 92 RPLLSRKKLLVSVAAGVKLKDL--QEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KI- 164 (272)
Q Consensus 92 ~~~l~~~~~iis~~~~~~~~~l--~~~~~--~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G-~~- 164 (272)
.+++.++.+||++++....+.. .+.+. +.+++.+ +.+.+.....|.+++..| +++.++.++++|+.++ +.
T Consensus 76 ~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG---~~~a~~~~~piL~~ia~~~~ 152 (459)
T PRK09287 76 LPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGG---QKEAYELVAPILEKIAAKVE 152 (459)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeC---CHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998665544332 22332 3445543 123344456677655544 7899999999999998 44
Q ss_pred ------EEcCcccchhHHHchHHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q 024121 165 ------WRADEKLFDAITGLSGPAYIFLAIEALADG---GV-AAGLPRELALGLAS 210 (272)
Q Consensus 165 ------~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~-~~Gl~~~~a~~~~~ 210 (272)
+++++.....+++++.+.+.+..++++.|+ ++ +.|+++++..+++.
T Consensus 153 ~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 153 DGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 788988888888887444445555555554 35 48999999988884
No 60
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.76 E-value=9.4e-19 Score=130.15 Aligned_cols=115 Identities=17% Similarity=0.319 Sum_probs=82.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
..+||+|||+|++|.++++.|.++|| .|..+++|++++.+++.. .+.....+..+++.++|+||++|||+.+.++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~----~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH----EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS----EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHH
Confidence 45899999999999999999999999 886544999888887776 3444445678889999999999999999999
Q ss_pred HHHhchh--cCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEcc
Q 024121 88 AMQIRPL--LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMP 127 (272)
Q Consensus 88 ~~~l~~~--l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p 127 (272)
.++|... ++++++|+++++..+.+.|+.... ++.+..+||
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred HHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 9999876 789999999998888887766443 466667776
No 61
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.76 E-value=1.6e-16 Score=145.45 Aligned_cols=192 Identities=17% Similarity=0.126 Sum_probs=140.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~ 64 (272)
..++|||||+|.||..||..++.+|+ +|++| |++++.+++. .+.| +..+.+
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 80 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH----TVLLY-DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEA 80 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 9999987663 3344 466667
Q ss_pred chhhhccCCEEEEeeCcc-cHHH-HHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ-VVKD-VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~-~~~~-v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
..+ +.+||+||.|++.+ +++. ++.++....++++++.+.++++++..++..+. ..++++.|...|..+. .+..++
T Consensus 81 ~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~-~LvEvv 158 (507)
T PRK08268 81 LAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM-KLVEVV 158 (507)
T ss_pred HHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC-eeEEEe
Confidence 655 56999999999865 4554 45667776778888877788999988887665 3568888876666544 355667
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCcc-cchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADEK-LFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTV 213 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~ 213 (272)
.+..++++.++.+.++++.+|+. +++++. .+ +....+...+.|++. .+.+.|.++++..+++...+
T Consensus 159 ~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrll~~~~~Ea~~-l~~~g~~~~~~iD~al~~~~ 226 (507)
T PRK08268 159 SGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVNRAARPYYTEALR-VLEEGVADPATIDAILREAA 226 (507)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhcC
Confidence 77788999999999999999975 666642 21 111112223445543 44566688888887776533
No 62
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.76 E-value=2.3e-16 Score=135.74 Aligned_cols=157 Identities=12% Similarity=0.145 Sum_probs=123.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c---------CceeecCc
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I---------GVKVLSDN 65 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~---------g~~~~~~~ 65 (272)
.+++.+||+|||+|.||+.||..++.+|+ +|.+| |++++..+.+.+ . .+..+.+.
T Consensus 3 ~~~~i~~VaVIGaG~MG~giA~~~a~aG~----~V~l~-D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l 77 (321)
T PRK07066 3 VITDIKTFAAIGSGVIGSGWVARALAHGL----DVVAW-DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATI 77 (321)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCH
Confidence 34567899999999999999999999999 99999 999876543221 1 12455677
Q ss_pred hhhhccCCEEEEeeCcc-cH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEe
Q 024121 66 NAVVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~-~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~ 142 (272)
++++++||+|+.|+|.+ ++ .+++.++....+++.++.|.+++++...+++.+. ..+++..||..|...-. ..-+++
T Consensus 78 ~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~p-LVEVv~ 156 (321)
T PRK07066 78 EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLP-LVEVLG 156 (321)
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCc-eEEEeC
Confidence 78889999999999854 34 4667788888888887777778888888888776 36899999877765433 333567
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 143 GGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
++.++++..+.+..+++.+|+. +.+.
T Consensus 157 g~~T~~e~~~~~~~f~~~lGk~pV~v~ 183 (321)
T PRK07066 157 GERTAPEAVDAAMGIYRALGMRPLHVR 183 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEeEecC
Confidence 8889999999999999999965 6653
No 63
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.75 E-value=1.3e-16 Score=138.03 Aligned_cols=136 Identities=20% Similarity=0.243 Sum_probs=101.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
+.|||+|||+|+||++|+..|.++|| +|++| +|++. .++.++++++|+||+|+|++++++++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~----~V~~~-~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~ 64 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH----RVRVW-SRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVA 64 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC----EEEEE-eCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHH
Confidence 46899999999999999999999999 99999 99853 35677888999999999999999999
Q ss_pred HHhchh-cCCCCEEEEEcCCCCHH-------HHHHHhCCCCEEEE-ccCchhhhcCC--ceEEEeCCCCCHHHHHHHHHH
Q 024121 89 MQIRPL-LSRKKLLVSVAAGVKLK-------DLQEWTGHSRFIRV-MPNTPSAVGEA--ATVMSLGGTATEEDGELIGKL 157 (272)
Q Consensus 89 ~~l~~~-l~~~~~iis~~~~~~~~-------~l~~~~~~~~~~~~-~p~~~~~~~~g--~~~~~~~~~~~~~~~~~v~~l 157 (272)
+++.++ +++++++|++++|+..+ .++..+.+.+++.. .|+.+..+..+ ...+..+ .+.+..+.++++
T Consensus 65 ~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag--~~~~~~~~v~~l 142 (308)
T PRK14619 65 EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVAS--RDLAAAETVQQI 142 (308)
T ss_pred HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEe--CCHHHHHHHHHH
Confidence 988764 67888999988766533 23334444565532 24444443322 2333333 268889999999
Q ss_pred hhhcCCe
Q 024121 158 FGSVGKI 164 (272)
Q Consensus 158 l~~~G~~ 164 (272)
|+..|..
T Consensus 143 l~~~~~~ 149 (308)
T PRK14619 143 FSSERFR 149 (308)
T ss_pred hCCCcEE
Confidence 9999854
No 64
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.75 E-value=2.9e-16 Score=143.27 Aligned_cols=190 Identities=16% Similarity=0.116 Sum_probs=138.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~ 64 (272)
+.+||+|||+|.||..||..++++|+ +|++| |++++.+++. .+.| ++.+.+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~----~V~l~-d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 78 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH----QVLLY-DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD 78 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence 56789999999999999999999999 99999 9999887643 2233 345667
Q ss_pred chhhhccCCEEEEeeCcc-cHH-HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ-VVK-DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~-~~~-~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
+++ +.+||+||.|+|.+ +++ .++.++....+++.++.+.++++++..+.+.+. ..++++.|...|..+. ....+.
T Consensus 79 ~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~-~LvEvv 156 (503)
T TIGR02279 79 LHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM-ALVEVV 156 (503)
T ss_pred HHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC-ceEEEe
Confidence 655 57999999999864 454 556677777788888877888889888877765 3578888877666543 456677
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcCcc-cchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRADEK-LFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQ 211 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~ 211 (272)
.|..++++.++.+.++++.+|+. +++++. .+ +....+...+.|++. .+.+.+.++++..+++..
T Consensus 157 ~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~~~~~EA~~-l~e~g~a~~~~ID~al~~ 222 (503)
T TIGR02279 157 SGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVARPYYAEALR-ALEEQVAAPAVLDAALRD 222 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHh
Confidence 78888999999999999999975 666542 21 111122223344443 345555788877776654
No 65
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.75 E-value=1.7e-15 Score=127.43 Aligned_cols=206 Identities=21% Similarity=0.205 Sum_probs=140.7
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHHcCceeecCc
Q 024121 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFESIGVKVLSDN 65 (272)
Q Consensus 11 ~~IgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~~~-----~~l~~~g~~~~~~~ 65 (272)
|||.+.|+||- |++||++|.++|| +|++| ||++++. +.+.+.|+..+.++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh----eV~V~-Drnrsa~e~e~~e~LaeaGA~~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH----DVVLA-EPNREFMSDDLWKKVEDAGVKVVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhHHHHHCCCeecCCH
Confidence 68899999874 7899999999999 99999 9987654 35777899998899
Q ss_pred hhhhccCCEEEEeeCcc-cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC--------CCCEEEEccC-chhhhcC
Q 024121 66 NAVVEYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--------HSRFIRVMPN-TPSAVGE 135 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~--------~~~~~~~~p~-~~~~~~~ 135 (272)
.++++++|+||+|+|.. ++++++.++.+++++|++||++ ++++++.+.+.+. +..+..+||. .|..-++
T Consensus 76 aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~ 154 (341)
T TIGR01724 76 KEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNT-CTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH 154 (341)
T ss_pred HHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC
Confidence 99999999999999876 4789988888889999999986 5677665544332 2456677774 3444445
Q ss_pred CceEEEe----C-CCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HH-HHcCCCHHHH
Q 024121 136 AATVMSL----G-GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GG-VAAGLPRELA 205 (272)
Q Consensus 136 g~~~~~~----~-~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~-~~~Gl~~~~a 205 (272)
+..++.. + .-.++++.+.+-++.+..++. +.++.+....+.-++ ....+....++.+ .+ +-.|-|.+.+
T Consensus 155 ~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~~~t~i~~ap~~~~ 233 (341)
T TIGR01724 155 GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYYVGTQIINAPKEMI 233 (341)
T ss_pred ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4444321 1 124788999999999999965 777765433332111 1111111112111 22 3466677777
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 024121 206 LGLASQTVLGAASMVTKS 223 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~ 223 (272)
.+.+..++...+.++.++
T Consensus 234 ~~~~~~~l~~~a~l~~~~ 251 (341)
T TIGR01724 234 EKQILMTLQTMASLVETS 251 (341)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777766666666666543
No 66
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.73 E-value=3.4e-16 Score=140.56 Aligned_cols=189 Identities=18% Similarity=0.224 Sum_probs=130.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (272)
|||+|||+|.||.++|..|.++|| +|++| |+++++.+.+.+ .| +..+.+..++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~----~V~~~-d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH----EVTGV-DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC----eEEEE-ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 589999999999999999999999 99999 999998877664 13 456667778889
Q ss_pred cCCEEEEeeCcc----------cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHH-HHhC---CC----C-EEEEccC
Q 024121 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQ-EWTG---HS----R-FIRVMPN 128 (272)
Q Consensus 71 ~aDivil~v~~~----------~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~-~~~~---~~----~-~~~~~p~ 128 (272)
++|+||+|||.. .+.++++++.+.++++++||+.+ +++. +.+. ..+. +. . .+...|.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe 154 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNPE 154 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECCC
Confidence 999999999854 37777888888888999988754 4432 2332 2221 11 1 1223332
Q ss_pred chhhhcCCce--------EEEeCCCCCHHHHHHHHHHhhhcC-C-eEEcCcccchhHHHchHHHHHHHHH---HHHHHHH
Q 024121 129 TPSAVGEAAT--------VMSLGGTATEEDGELIGKLFGSVG-K-IWRADEKLFDAITGLSGPAYIFLAI---EALADGG 195 (272)
Q Consensus 129 ~~~~~~~g~~--------~~~~~~~~~~~~~~~v~~ll~~~G-~-~~~~~e~~~~~~~~~~~~~~~~~~~---~~l~~~~ 195 (272)
....|.. .++.| .+++..+.++++++.++ . .++.++......+++..+.|....+ ..+...+
T Consensus 155 ---~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 155 ---FLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred ---cCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223321 33334 37889999999999997 3 4666666656667766444433322 2333356
Q ss_pred HHcCCCHHHHHHHHH
Q 024121 196 VAAGLPRELALGLAS 210 (272)
Q Consensus 196 ~~~Gl~~~~a~~~~~ 210 (272)
++.|+|.++..+++.
T Consensus 230 ~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 230 EALGIDVYEVIEAAG 244 (411)
T ss_pred HHhCCCHHHHHHHhC
Confidence 799999998877765
No 67
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.73 E-value=2.2e-15 Score=131.89 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=119.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---------C------ceeecCchhhhccC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------G------VKVLSDNNAVVEYS 72 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---------g------~~~~~~~~~~~~~a 72 (272)
..+|||+|||+|+||++++..|.++| .+.+| .|+++..+.+.+. + +....+..++++++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-----~v~l~-~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-----PTLQW-VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-----CEEEE-eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 34589999999999999999999987 47889 8999888777652 1 23455666778899
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-------HHHHHHhCCCC-EEEEccCchhhhcCCceE--EEe
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGHSR-FIRVMPNTPSAVGEAATV--MSL 142 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-------~~l~~~~~~~~-~~~~~p~~~~~~~~g~~~--~~~ 142 (272)
|+||+|||+++++++++++.+++++++.+|++++|+.. +.+++.+++.+ .+...|+.+..+..|... +..
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via 158 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLA 158 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999888899999999975 46666666333 456679988887777632 222
Q ss_pred CCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 143 GGTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
. .+++..+.++.+|+.-+-.++.+++
T Consensus 159 ~--~~~~~~~~v~~lf~~~~~~v~~s~D 184 (341)
T PRK12439 159 M--PDQHLATRLSPLFRTRRFRVYTTDD 184 (341)
T ss_pred e--CCHHHHHHHHHHhCCCCEEEEEcCc
Confidence 2 2567778899999887744454544
No 68
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.72 E-value=2.4e-15 Score=127.56 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=118.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeecCchhhhccCCEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiv 75 (272)
++||+|||.|+||+++|.-|.++|| +|.+| .|+++..+++... ++..+.|..++++++|+|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~----~V~lw-~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGH----EVRLW-GRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCC----eeEEE-ecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 4789999999999999999999999 99999 9999888777651 234567888999999999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-------HHHHHHhCCCCEE-EEccCchhhhcCCceE-E-EeCCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGHSRFI-RVMPNTPSAVGEAATV-M-SLGGT 145 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-------~~l~~~~~~~~~~-~~~p~~~~~~~~g~~~-~-~~~~~ 145 (272)
+++||.+.+++++.++.++++++..++++++|+.. +.+++.++..++. -.-|++..++.++... + ..+
T Consensus 76 v~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas-- 153 (329)
T COG0240 76 VIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVAS-- 153 (329)
T ss_pred EEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEec--
Confidence 99999999999999999899999999999999854 3345556643332 2347887777776532 2 222
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 146 ATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 146 ~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.+++..+.++.+|+.=--.++.+++
T Consensus 154 ~d~~~a~~v~~~f~~~~Frvy~~~D 178 (329)
T COG0240 154 NDQEAAEKVQALFSSPYFRVYTSTD 178 (329)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCc
Confidence 3778888888988762222444554
No 69
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=2.5e-15 Score=128.31 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=119.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC-------------ceeecCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG-------------VKVLSDN 65 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g-------------~~~~~~~ 65 (272)
+.||+|||+|.||..||..++.+|+ +|++| |++++.+++ +.+.| ++.+.+.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGV----DVLVF-ETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 3589999999999999999999999 99999 999988765 33333 2355666
Q ss_pred hhhhccCCEEEEeeCcc-cHH-HHHHHhchhc-CCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 66 NAVVEYSDVVVFSVKPQ-VVK-DVAMQIRPLL-SRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 66 ~~~~~~aDivil~v~~~-~~~-~v~~~l~~~l-~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
+.+++||+||.|+|.+ +++ +++..+.... +++++++|.+++++...++.... ..++++.|+..|....... -+.
T Consensus 80 -~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv-Elv 157 (286)
T PRK07819 80 -GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV-ELV 157 (286)
T ss_pred -HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE-EEe
Confidence 5589999999999865 454 5556666666 78999999999999998887665 3578888887776655444 445
Q ss_pred eCCCCCHHHHHHHHHHhh-hcCCe-EEcCc
Q 024121 142 LGGTATEEDGELIGKLFG-SVGKI-WRADE 169 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~-~~G~~-~~~~e 169 (272)
++..++++.++.+.+++. .+|+. +.+.+
T Consensus 158 ~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d 187 (286)
T PRK07819 158 PTLVTSEATVARAEEFASDVLGKQVVRAQD 187 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceEecC
Confidence 677889999999999988 69965 66654
No 70
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.72 E-value=1.3e-15 Score=133.72 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=105.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----------------ecCchhhhccC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------------LSDNNAVVEYS 72 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~a 72 (272)
+|||+|||+|.||++++..|.++|+ +|++| +|++. .+.+.+.|..+ ..+ .+.+.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGA----DVTLI-GRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTD-PAALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC----cEEEE-ecHHH-HHHHHhcCceeecCCCcceecccceeEeccC-hhhccCC
Confidence 4789999999999999999999999 99999 99753 45555545432 223 3557899
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEE-cc-----Cchhh---hcCCceEEEe
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRV-MP-----NTPSA---VGEAATVMSL 142 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~-~p-----~~~~~---~~~g~~~~~~ 142 (272)
|+||+|||+++..++++++.+.++++++|+++++|+.. +.+++.++..+++.. .| ..|.. ...|...+
T Consensus 75 D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~-- 152 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI-- 152 (341)
T ss_pred CEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--
Confidence 99999999999999999999988899999999999874 667777764333322 11 11211 12333322
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024121 143 GGTATEEDGELIGKLFGSVGKI-WRADE 169 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~~-~~~~e 169 (272)
+. .+..+.+.++|+..|.. .+.++
T Consensus 153 ~~---~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 153 EA---SPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred cC---CchHHHHHHHHHhcCCCceecch
Confidence 22 24568899999998844 54444
No 71
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.2e-14 Score=116.40 Aligned_cols=218 Identities=16% Similarity=0.190 Sum_probs=150.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc---cCCEEEEeeCcc-cHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE---YSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~aDivil~v~~~-~~~~ 86 (272)
|+||.||+|+||..|+++|++.|| +|++| |+|++..+.++..|+..+.++.+.+. ...+|.++||.. .+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh----dvV~y-D~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH----DVVGY-DVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 789999999999999999999999 99999 99999999999989887777766544 678999999987 6789
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHH--HhC--CCCEEEEccC-chhhhcCCceEEEeCCCCCHHHHHHHHHHhhhc
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQE--WTG--HSRFIRVMPN-TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~--~~~--~~~~~~~~p~-~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~ 161 (272)
+++++.+.+.++.+||+--++.-.+.+++ .+. +.+++.+-.. .+.-...|...+..| +.+.++.+.|+|+.+
T Consensus 76 vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~~~~pif~~l 152 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVERLEPIFKAL 152 (300)
T ss_pred HHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHHHHHHHHHhh
Confidence 99999999999999998655443444443 222 3455544222 222235677777765 789999999999998
Q ss_pred CC--e--EEcCcccchhHHHch--HHHHHHHHHHHHHH---HHHH--cCCCHHHHHHHHHHH-HHHHH-----HHHHhcC
Q 024121 162 GK--I--WRADEKLFDAITGLS--GPAYIFLAIEALAD---GGVA--AGLPRELALGLASQT-VLGAA-----SMVTKSG 224 (272)
Q Consensus 162 G~--~--~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~---~~~~--~Gl~~~~a~~~~~~~-~~g~~-----~~~~~~~ 224 (272)
.. . .++++..-..+.+.+ +.-| .++++++| ..++ ..+|.++..++...+ ..+++ .-+.+..
T Consensus 153 A~ge~Gyl~~Gp~GsGHfvKMVHNGIEY--GmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d 230 (300)
T COG1023 153 APGEDGYLYCGPSGSGHFVKMVHNGIEY--GMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD 230 (300)
T ss_pred CcCcCccccccCCCcchhHHHHhccHHH--HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC
Confidence 63 2 467888777777776 3322 33444443 2333 345566555544422 22232 2222333
Q ss_pred CCHHHHHHhcCCCc
Q 024121 225 KHPGQLKDDVASPG 238 (272)
Q Consensus 225 ~~~~~l~~~~~~~~ 238 (272)
-+.+.+.+.+.+.+
T Consensus 231 ~~L~q~~g~v~dSG 244 (300)
T COG1023 231 PDLDQISGRVSDSG 244 (300)
T ss_pred CCHHHhcCeeccCC
Confidence 45667777776644
No 72
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.71 E-value=7.8e-16 Score=137.93 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=126.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------------------CceeecCchhhh
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNNAVV 69 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~~ 69 (272)
.+|||+|||+|.||.+||.+|.++|| +|++| |+++++.+.+..- |.....+ .+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~---~~ 73 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQK----QVIGV-DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT---TP 73 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec---cc
Confidence 46899999999999999999999999 99999 9999998876431 2111111 13
Q ss_pred ccCCEEEEeeCc----------ccHHHHHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhC----C--CC---------
Q 024121 70 EYSDVVVFSVKP----------QVVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG----H--SR--------- 121 (272)
Q Consensus 70 ~~aDivil~v~~----------~~~~~v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~----~--~~--------- 121 (272)
++||+||+|||. ..+.++++++.++++++++||..+ +++ .+.+...+. + .+
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S-Tv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES-TSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC-CCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 489999999986 467778888999999999988653 333 333433221 0 01
Q ss_pred EEEEcc-----CchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC-eEEcCcccchhHHHchHHHHHHHH---HHHHH
Q 024121 122 FIRVMP-----NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGPAYIFLA---IEALA 192 (272)
Q Consensus 122 ~~~~~p-----~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~e~~~~~~~~~~~~~~~~~~---~~~l~ 192 (272)
.+...| +.......-...+..| .+++..+.++++++.++. .+++++......++++.+.|...- +..+.
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred EEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222 1111111112233444 378889999999999985 466666666677777644444333 33334
Q ss_pred HHHHHcCCCHHHHHHHHH
Q 024121 193 DGGVAAGLPRELALGLAS 210 (272)
Q Consensus 193 ~~~~~~Gl~~~~a~~~~~ 210 (272)
..+++.|+|.++..+.+.
T Consensus 231 ~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 231 LICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHhCCCHHHHHHHhc
Confidence 456799999998877654
No 73
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.71 E-value=2.9e-15 Score=129.42 Aligned_cols=153 Identities=17% Similarity=0.274 Sum_probs=110.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----------ecCchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~aDivil~v 79 (272)
|||+|||+|+||+.++..|.++|+ +|+++ +|++++.+.+.+.|..+ ..+..++ +++|+||+||
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH----DVTLV-ARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence 689999999999999999999999 99999 99888888777756532 2334443 8899999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEE---------EccCchhhhcCCceEEEeCCCCCHH
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIR---------VMPNTPSAVGEAATVMSLGGTATEE 149 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~---------~~p~~~~~~~~g~~~~~~~~~~~~~ 149 (272)
|+.+++++++++.+++.++++||++.+|+.. +.+.+.++...++. ..|+.....+.+...+...+. +.+
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~-~~~ 153 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDG-ESA 153 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCC-CcH
Confidence 9999999999999988888899999999974 66777666333332 223333333444444432221 224
Q ss_pred HHHHHHHHhhhcCCeEEcCcc
Q 024121 150 DGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 150 ~~~~v~~ll~~~G~~~~~~e~ 170 (272)
..+.+.++|+..|..+...++
T Consensus 154 ~~~~l~~~l~~~~~~~~~~~d 174 (304)
T PRK06522 154 AAEALADLLNAAGLDVEWSPD 174 (304)
T ss_pred HHHHHHHHHHhcCCCCCCChH
Confidence 467788888887755444443
No 74
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.70 E-value=6.8e-15 Score=128.35 Aligned_cols=153 Identities=13% Similarity=0.215 Sum_probs=106.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--C------------ceeecCchhhh-ccCCEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--G------------VKVLSDNNAVV-EYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g------------~~~~~~~~~~~-~~aDiv 75 (272)
|||+|||+|+||++++..|.++|+ +|.+| +|+++..+.+.+. + +....+..+.+ .++|+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~----~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli 75 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI----SVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI 75 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence 589999999999999999999999 99999 9998887777652 1 22334555555 589999
Q ss_pred EEeeCcccHHHHHHHhch-hcCCCCEEEEEcCCCCH-------HHHHHHhCCCCEEE-EccCchhhhcCCc-e-EEEeCC
Q 024121 76 VFSVKPQVVKDVAMQIRP-LLSRKKLLVSVAAGVKL-------KDLQEWTGHSRFIR-VMPNTPSAVGEAA-T-VMSLGG 144 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~-~l~~~~~iis~~~~~~~-------~~l~~~~~~~~~~~-~~p~~~~~~~~g~-~-~~~~~~ 144 (272)
|+|||+++++++++++.+ ++.+++.+++.++|+.. +.+.+.++..++.. .-|+.......+. + +...+
T Consensus 76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~- 154 (326)
T PRK14620 76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAG- 154 (326)
T ss_pred EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEec-
Confidence 999999999999999998 88888888888899854 55666666444432 2344333333332 2 22233
Q ss_pred CCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 145 TATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.+.+..+.+.++|+.-+-..+.+++
T Consensus 155 -~~~~~~~~l~~~l~~~~~~~~~~~D 179 (326)
T PRK14620 155 -QNETLGSSLISKLSNENLKIIYSQD 179 (326)
T ss_pred -CCHHHHHHHHHHHCCCCeEEEecCc
Confidence 2444556666666655544444554
No 75
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.68 E-value=1.6e-15 Score=120.40 Aligned_cols=151 Identities=21% Similarity=0.337 Sum_probs=112.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHH-cCce-eecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES-IGVK-VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~-~g~~-~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
+|+|+|+|+|+||++++++|.++|| +|.+- +|+ +++.+.+.+ .+.. ...+++++++.+|+||++||-+.+.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~----eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH----EVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC----eEEEe-cCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 5899999999999999999999999 99988 554 444444444 3332 23567888999999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCC-----------------HHHHHHHhCCCCEEEEccCchhhh------c-CCceEEEe
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVK-----------------LKDLQEWTGHSRFIRVMPNTPSAV------G-EAATVMSL 142 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~-----------------~~~l~~~~~~~~~~~~~p~~~~~~------~-~g~~~~~~ 142 (272)
++.++...+. +++|||.++++. .+.+++.+++.++++.+-+.+... . ....++++
T Consensus 76 v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~va 154 (211)
T COG2085 76 VLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVA 154 (211)
T ss_pred HHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEe
Confidence 9999988774 899999888631 235667777777877655544322 1 12334455
Q ss_pred CCCCCHHHHHHHHHHhhhcCC-eEEcC
Q 024121 143 GGTATEEDGELIGKLFGSVGK-IWRAD 168 (272)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~G~-~~~~~ 168 (272)
|+ |.+..+.+..+.+.+|- .+-.+
T Consensus 155 gD--D~~Ak~~v~~L~~~iG~~~ld~G 179 (211)
T COG2085 155 GD--DAEAKAVVAELAEDIGFRPLDAG 179 (211)
T ss_pred cC--cHHHHHHHHHHHHhcCcceeecc
Confidence 64 78889999999999994 45554
No 76
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.68 E-value=2.1e-15 Score=120.10 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=109.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------------------------cCceeecCchh
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------------------------IGVKVLSDNNA 67 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------------------------~g~~~~~~~~~ 67 (272)
||+|||+|.||..||..++.+|+ +|.+| +++++.++...+ ..+....+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~ 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY----EVTLY-DRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS----EEEEE--SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH
Confidence 69999999999999999999999 99999 999986543221 13456678777
Q ss_pred hhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCC
Q 024121 68 VVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (272)
Q Consensus 68 ~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~ 144 (272)
+. +||+||-|+|.+ .-++++.++....++++++.|.++++++..+...++ ..+++++|+..|..... ..=+++++
T Consensus 76 ~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~-lVEvv~~~ 153 (180)
T PF02737_consen 76 AV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP-LVEVVPGP 153 (180)
T ss_dssp GC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT---EEEEEE-T
T ss_pred Hh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc-eEEEeCCC
Confidence 66 999999999754 346788999988899999999999999999988776 36899999877765333 33356778
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEc
Q 024121 145 TATEEDGELIGKLFGSVGKI-WRA 167 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~-~~~ 167 (272)
.++++..+.+..+++.+|+. +.+
T Consensus 154 ~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 154 KTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp TS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 89999999999999999975 443
No 77
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.65 E-value=2.3e-15 Score=117.40 Aligned_cols=121 Identities=19% Similarity=0.336 Sum_probs=92.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeecCchhhhccCCEEEE
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDivil 77 (272)
||+|||+|+||.++|..|.++|+ +|++| .|+++..+.+.+. ++.++.|.+++++++|+|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~----~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH----EVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE----EEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence 79999999999999999999999 99999 9999988888761 23467788899999999999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCC-------HHHHHHHhCCCCEEE-EccCchhhhcCCc
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-------LKDLQEWTGHSRFIR-VMPNTPSAVGEAA 137 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~-------~~~l~~~~~~~~~~~-~~p~~~~~~~~g~ 137 (272)
+||.+.++++++++.+++++++.++++++|+. .+.+++.++..++.- .-|+.+.++..+.
T Consensus 76 avPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~ 143 (157)
T PF01210_consen 76 AVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGK 143 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT-
T ss_pred cccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCC
Confidence 99999999999999999999999999988872 245566666433332 3477777665553
No 78
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.64 E-value=1.4e-13 Score=119.33 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=106.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------------cCchhhhccCC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------------SDNNAVVEYSD 73 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------------~~~~~~~~~aD 73 (272)
+++.|||+|||+|.||+.+|..|.++|+ +|+++ .|++. +.+.+.|+... .+..+....+|
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~----~V~~~-~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 74 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGF----DVHFL-LRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCD 74 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCC
Confidence 3466899999999999999999999999 99999 88763 33444443221 11223456899
Q ss_pred EEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEc------cCchhhh---cCCceEEEeC
Q 024121 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVM------PNTPSAV---GEAATVMSLG 143 (272)
Q Consensus 74 ivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~------p~~~~~~---~~g~~~~~~~ 143 (272)
+||+|||..++.++++.+.+.+.+++.|+++.+|+.. +.+++.++..+++... ...|..+ +.|.+.+...
T Consensus 75 ~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 75 WVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred EEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 9999999999999999999988889999999999975 5677788754554321 1122211 2233333221
Q ss_pred CCCC-----HHHHHHHHHHhhhcCCeEEcCc
Q 024121 144 GTAT-----EEDGELIGKLFGSVGKIWRADE 169 (272)
Q Consensus 144 ~~~~-----~~~~~~v~~ll~~~G~~~~~~e 169 (272)
.+.+ .+..+.+..+|+..|-.....+
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~ 185 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGIDSQAMP 185 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCCceeCc
Confidence 1112 3556677888888885544444
No 79
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.64 E-value=9.5e-14 Score=120.03 Aligned_cols=154 Identities=15% Similarity=0.269 Sum_probs=106.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------------ecCchhhhccCCEEEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVVVF 77 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDivil 77 (272)
|||+|||+|.||+.++..|.++|+ +|++| +| +++.+.+.+.|+.+ ..+.++....+|+||+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~----~V~~~-~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR----DVTFL-VR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC----ceEEE-ec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 689999999999999999999999 99999 99 77777777655432 2334455578999999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCC-HHHHHHHhCCCCEEEE---ccC---chhhhc---CCceEEEeCCCCC
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFIRV---MPN---TPSAVG---EAATVMSLGGTAT 147 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~-~~~l~~~~~~~~~~~~---~p~---~~~~~~---~g~~~~~~~~~~~ 147 (272)
|+|..+++++++++.+.+.++++|+++.+|+. .+.+.+.++..+++.. ++. .|..+. .+...+..-+...
T Consensus 75 avk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 75 AVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred EecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 99999999999999998888889999999987 4667777764344322 111 122111 1122221111223
Q ss_pred HHHHHHHHHHhhhcCCeEEcCcc
Q 024121 148 EEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 148 ~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.+..+.+.++|+..|..+...++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHH
Confidence 45566777888887754343443
No 80
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.63 E-value=9.4e-14 Score=121.62 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=111.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCcEEEEeCCCHH-----HHHHHHH--------------cCceee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFES--------------IGVKVL 62 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g-------~~~~~~V~v~~~r~~~-----~~~~l~~--------------~g~~~~ 62 (272)
+.+||+|||+|+||+++|..|.++| + +|.+| .|+++ ..+.+.+ .++..+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~t 84 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHN----EVRMW-VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAV 84 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEe
Confidence 3579999999999999999999987 6 99999 88875 2444443 134456
Q ss_pred cCchhhhccCCEEEEeeCcccHHHHHHHhch--hcCCCCEEEEEcCCCCHH---------HHHHHhCCCCEE-EEccCch
Q 024121 63 SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRP--LLSRKKLLVSVAAGVKLK---------DLQEWTGHSRFI-RVMPNTP 130 (272)
Q Consensus 63 ~~~~~~~~~aDivil~v~~~~~~~v~~~l~~--~l~~~~~iis~~~~~~~~---------~l~~~~~~~~~~-~~~p~~~ 130 (272)
+|..++++++|+|+++||++.+++++.++.+ ++.+++++||+++|+..+ .+++.++ .++. -.-|+++
T Consensus 85 sdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A 163 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVA 163 (365)
T ss_pred cCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHH
Confidence 7778889999999999999999999999998 777777999999988642 2334444 3443 2348888
Q ss_pred hhhcCCce--EEEeCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024121 131 SAVGEAAT--VMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (272)
Q Consensus 131 ~~~~~g~~--~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 170 (272)
.++..+.. +...+ .+.+..+.++.+|+.=.-.++.+++
T Consensus 164 ~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~D 203 (365)
T PTZ00345 164 NDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPD 203 (365)
T ss_pred HHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCC
Confidence 77766542 22222 2677888888888753322444443
No 81
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.63 E-value=1.2e-13 Score=117.22 Aligned_cols=192 Identities=17% Similarity=0.160 Sum_probs=130.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.....++|||||+|+||.++|++|...|+ +|.+| +|.....+.....|+.+. +..+++++||+|++++|+....
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~----~ViV~-~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t~ 85 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV----EVVVG-VRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQA 85 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcC----EEEEE-ECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHHH
Confidence 34466899999999999999999999999 99999 876544444555687764 7899999999999999986667
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCCCHHHHHHHhC--CCCEEEEccCchhhh-------cCCceEEE-eCCCCCHHHHHHH
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATEEDGELI 154 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~~~~~l~~~~~--~~~~~~~~p~~~~~~-------~~g~~~~~-~~~~~~~~~~~~v 154 (272)
.++. ++.+.++++.+++ .+-|..+.. ....| +..++-+-|-.|.+. +.|+..++ .-.+.+..+.+..
T Consensus 86 ~V~~~eil~~MK~GaiL~-f~hgfni~~-~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~a 163 (335)
T PRK13403 86 HVYKAEVEENLREGQMLL-FSHGFNIHF-GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVA 163 (335)
T ss_pred HHHHHHHHhcCCCCCEEE-ECCCcceec-CceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHH
Confidence 7874 6888899998766 456666532 12233 456676667666532 45665443 2233456678888
Q ss_pred HHHhhhcCC--e-EE-c---CcccchhH---HHchHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 024121 155 GKLFGSVGK--I-WR-A---DEKLFDAI---TGLSGPAYIFLAIEALADGGVAAGLPRELALG 207 (272)
Q Consensus 155 ~~ll~~~G~--~-~~-~---~e~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~ 207 (272)
..+...+|. . +. . .|..-|.+ ..++ .-+..++.+-.+...++|.+|+.|+-
T Consensus 164 la~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~--Gg~~~li~~gfe~lveaGy~pe~Ayf 224 (335)
T PRK13403 164 LAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLC--GGVTALVKAGFETLTEGGYRPEIAYF 224 (335)
T ss_pred HHHHHHcCCCceeEEecchHHHHhhhhcccchhhH--HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 888999983 2 22 1 23233333 3333 12233444555567889999998864
No 82
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.62 E-value=7e-14 Score=125.42 Aligned_cols=190 Identities=15% Similarity=0.165 Sum_probs=123.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc----------------eeecCchhhhccCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV----------------KVLSDNNAVVEYSD 73 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~----------------~~~~~~~~~~~~aD 73 (272)
.|||||||+|.||..||.+|.+ || +|++| |+++++.+.+.+ |. ..+++..+++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~----~V~g~-D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SR----QVVGF-DVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CC----EEEEE-eCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCC
Confidence 4899999999999999999877 68 99999 999999998873 22 13344456789999
Q ss_pred EEEEeeCcc-------c---HHHHHHHhchhcCCCCEEEEEcCCCCH---H-HHHHHhC---C-----CCEEEEccC--c
Q 024121 74 VVVFSVKPQ-------V---VKDVAMQIRPLLSRKKLLVSVAAGVKL---K-DLQEWTG---H-----SRFIRVMPN--T 129 (272)
Q Consensus 74 ivil~v~~~-------~---~~~v~~~l~~~l~~~~~iis~~~~~~~---~-~l~~~~~---~-----~~~~~~~p~--~ 129 (272)
++|+|||.. + +....+++.++++++++||..+ ++++ + .++..+. + ...+...|- .
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S-Tv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES-TVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERIN 157 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec-CCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCC
Confidence 999999732 3 3344467888888999988653 3332 2 2222221 1 122332232 1
Q ss_pred hhhh---cCCceEEEeCCCCCHHHHHHHHHHhhhcC--CeEEcCcccchhHHHchHHHHHHH---HHHHHHHHHHHcCCC
Q 024121 130 PSAV---GEAATVMSLGGTATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGPAYIFL---AIEALADGGVAAGLP 201 (272)
Q Consensus 130 ~~~~---~~g~~~~~~~~~~~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~Gl~ 201 (272)
+... .....-+..|. +++..+.++++++.+. ..++++...-...++++.+.|... ++..+...+++.|+|
T Consensus 158 ~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD 235 (425)
T PRK15182 158 PGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNID 235 (425)
T ss_pred CCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 1111 11122244453 5777889999999885 346666666677777774444433 333444467899999
Q ss_pred HHHHHHHH
Q 024121 202 RELALGLA 209 (272)
Q Consensus 202 ~~~a~~~~ 209 (272)
.++..+.+
T Consensus 236 ~~~v~~a~ 243 (425)
T PRK15182 236 TEAVLRAA 243 (425)
T ss_pred HHHHHHHh
Confidence 99888774
No 83
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.61 E-value=1.5e-13 Score=119.52 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=105.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCC--------CCCCCcEEEEeCC-----CHHHHHHHHH--------------cCceeecC
Q 024121 12 ILGFIGAGKMAESIAKGVAKSG--------VLPPDRICTAVHS-----NLKRRDAFES--------------IGVKVLSD 64 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g--------~~~~~~V~v~~~r-----~~~~~~~l~~--------------~g~~~~~~ 64 (272)
||+|||+|+||+++|..|.++| + +|.+| .| +++-.+.+.+ .++..+.|
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEE----SVRMW-VFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCc----eEEEE-EeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECC
Confidence 6999999999999999999998 7 99999 88 4444444332 12345677
Q ss_pred chhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHH---------HHHHHhCCCCEE-EEccCchhhhc
Q 024121 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---------DLQEWTGHSRFI-RVMPNTPSAVG 134 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~---------~l~~~~~~~~~~-~~~p~~~~~~~ 134 (272)
.+++++++|+||++||++.+++++.++.+++++++++|++++|+..+ .+++.++ .++. -.-|+.+..+.
T Consensus 76 l~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~-~~~~~lsGP~~A~Eva 154 (342)
T TIGR03376 76 LVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG-IPCGVLSGANLANEVA 154 (342)
T ss_pred HHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC-CCeEEeeCcchHHHHH
Confidence 78889999999999999999999999999998899999999998654 2344443 3443 23478887776
Q ss_pred CCc--eEEEeCCCCC--HHHHHHHHHHhhh
Q 024121 135 EAA--TVMSLGGTAT--EEDGELIGKLFGS 160 (272)
Q Consensus 135 ~g~--~~~~~~~~~~--~~~~~~v~~ll~~ 160 (272)
.+. .....+.+.+ .+..+.++.+|+.
T Consensus 155 ~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~ 184 (342)
T TIGR03376 155 KEKFSETTVGYRDPADFDVDARVLKALFHR 184 (342)
T ss_pred cCCCceEEEEeCCCcchHHHHHHHHHHhCC
Confidence 665 2222222111 6778888888874
No 84
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.61 E-value=1.2e-13 Score=122.57 Aligned_cols=186 Identities=14% Similarity=0.136 Sum_probs=121.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------------cCcee--ecCchhhhccC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------------IGVKV--LSDNNAVVEYS 72 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~a 72 (272)
|||+|||+|.||..+|..+. .|| +|++| |+++++.+.+.+ .+... +.+..+++.++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~----~Vigv-D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNH----EVVAL-DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCC----cEEEE-ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCC
Confidence 58999999999999997766 589 99999 999999888765 22333 23356778899
Q ss_pred CEEEEeeCcc-----------cHHHHHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhCCCCEEEEccCchhhhcCCce
Q 024121 73 DVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAVGEAAT 138 (272)
Q Consensus 73 Divil~v~~~-----------~~~~v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~~~~~~~~~p~~~~~~~~g~~ 138 (272)
|+||+|||.. .++++++++.. ++++++||.. ++++ .+.+.+.+.. ..+... |.-...|..
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~-STv~pgtt~~l~~~~~~-~~v~~~---PE~l~~G~a 148 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIK-STVPVGFTAAMHKKYRT-ENIIFS---PEFLREGKA 148 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEe-eecCCchHHHHHHHhhc-CcEEEC---cccccCCcc
Confidence 9999999743 56777788876 5888888854 3333 3455544432 222232 332333332
Q ss_pred --------EEEeCCCCCHHHHHHHHHHhhh--cCC-e-EEcCcccchhHHHchHHHHHHH---HHHHHHHHHHHcCCCHH
Q 024121 139 --------VMSLGGTATEEDGELIGKLFGS--VGK-I-WRADEKLFDAITGLSGPAYIFL---AIEALADGGVAAGLPRE 203 (272)
Q Consensus 139 --------~~~~~~~~~~~~~~~v~~ll~~--~G~-~-~~~~e~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~Gl~~~ 203 (272)
-+..|. +++..+.+.+++.. ++. . ++++......++++..+.|... ++..+...+++.|+|..
T Consensus 149 ~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~ 226 (388)
T PRK15057 149 LYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTR 226 (388)
T ss_pred cccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 233332 45667778888854 554 3 3456655666777764444433 33444556789999999
Q ss_pred HHHHHHH
Q 024121 204 LALGLAS 210 (272)
Q Consensus 204 ~a~~~~~ 210 (272)
+..+.+.
T Consensus 227 eV~~a~~ 233 (388)
T PRK15057 227 QIIEGVC 233 (388)
T ss_pred HHHHHhc
Confidence 8877664
No 85
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.58 E-value=1.8e-12 Score=111.49 Aligned_cols=153 Identities=16% Similarity=0.265 Sum_probs=109.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec------------CchhhhccCCEEEEe
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~~aDivil~ 78 (272)
|||+|+|+|.||+.++..|.++|+ +|+++ .|++. .+++++.|+.+.. +..+....+|+||++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~----~V~~~-~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGH----DVTLL-VRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence 799999999999999999999998 99999 88865 7888876654321 223456689999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCHH-HHHHHhCCCCEEE-Ecc--------CchhhhcCCceEEEeCCCCCH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-DLQEWTGHSRFIR-VMP--------NTPSAVGEAATVMSLGGTATE 148 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~-~l~~~~~~~~~~~-~~p--------~~~~~~~~g~~~~~~~~~~~~ 148 (272)
|+..+.+++++.+.+.+++++.|+.+.+|+... .+++.++..++.. +.+ +.-...+.|.+.+..-....+
T Consensus 75 vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 75 VKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred eccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 999999999999999999999999999999874 5666666433332 211 111112223333332222344
Q ss_pred HHHHHHHHHhhhcCCeEEcCc
Q 024121 149 EDGELIGKLFGSVGKIWRADE 169 (272)
Q Consensus 149 ~~~~~v~~ll~~~G~~~~~~e 169 (272)
+..+.+.++|+..|-..+..+
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~ 175 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHP 175 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcH
Confidence 678888888888885544444
No 86
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.56 E-value=2e-13 Score=109.53 Aligned_cols=181 Identities=13% Similarity=0.188 Sum_probs=126.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
|||+|||. |.||+.+++.|.++|+ .|+ +.+||+||+|+|...+.++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~----~v~---------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL----GVY---------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC----EEE---------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 68999988 9999999999999999 764 258999999999999999998
Q ss_pred HhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCch-hhhcC---CceEEEeCCCCCHHHHHHHHHHhhhcC-Ce
Q 024121 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTP-SAVGE---AATVMSLGGTATEEDGELIGKLFGSVG-KI 164 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~~-~~~~~---g~~~~~~~~~~~~~~~~~v~~ll~~~G-~~ 164 (272)
++. .+++|+ ++++.. +.+. ..++++.||... ..... +..+++ .+..+++..+.++++|+ | +.
T Consensus 50 ~~~------~~v~Dv-~SvK~~-i~~~--~~~~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~~~~~~~~~l~~--G~~~ 116 (197)
T PRK06444 50 SYD------NNFVEI-SSVKWP-FKKY--SGKIVSIHPLFGPMSYNDGVHRTVIFI-NDISRDNYLNEINEMFR--GYHF 116 (197)
T ss_pred HhC------CeEEec-cccCHH-HHHh--cCCEEecCCCCCCCcCcccccceEEEE-CCCCCHHHHHHHHHHHc--CCEE
Confidence 764 256665 555554 3333 247899998643 22222 223333 45567777889999998 6 45
Q ss_pred EEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhcCCCcchH
Q 024121 165 WRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS-GKHPGQLKDDVASPGGTT 241 (272)
Q Consensus 165 ~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~g~t 241 (272)
+++++++||..++.+ .|+.++. ++.+ . + .++...+|+...+++.+. +.+|+.|.+.+..+...
T Consensus 117 ~~~t~eeHD~~~A~ishLpH~ia~---al~~----~--~----~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~a- 182 (197)
T PRK06444 117 VEMTADEHDLLMSEIMVKPYIISM---ILKD----I--K----SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT- 182 (197)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHH---HHcc----C--C----CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCchH-
Confidence 789999999999887 5554332 3322 1 1 245667788877776432 56899999988777544
Q ss_pred HHHHHHHHh
Q 024121 242 IAGIHELEK 250 (272)
Q Consensus 242 ~~~l~~l~~ 250 (272)
+.++.+.+
T Consensus 183 -~~~~~~~~ 190 (197)
T PRK06444 183 -NVINDLIE 190 (197)
T ss_pred -HHHHHHHH
Confidence 55555543
No 87
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.52 E-value=1.7e-12 Score=110.25 Aligned_cols=150 Identities=21% Similarity=0.232 Sum_probs=117.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------HcC-------------ceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SIG-------------VKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~g-------------~~~~~ 63 (272)
+..+||++||+|.||+.||..+..+|+ +|.++ |++++.+++.. +.| +....
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~ 75 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFALAGY----DVVLK-DISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTT 75 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhhcCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccC
Confidence 357899999999999999999999889 99999 99976543322 111 11122
Q ss_pred CchhhhccCCEEEEeeCcc-c-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ-V-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~-~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+.. .+++||+||-+++-+ . -++++.++..+.+++.++-|.+|++++..+++.+. ..++++.|+..|.....- .-+
T Consensus 76 ~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~L-VEv 153 (307)
T COG1250 76 DLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPL-VEV 153 (307)
T ss_pred chh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCccee-EEE
Confidence 222 578999999999754 3 46788888888889999999999999999988775 367999998777765442 334
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~ 164 (272)
..|..++++.++.+.++.+.+|+.
T Consensus 154 I~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 154 IRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCC
Confidence 567888999999999999999965
No 88
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.52 E-value=2.3e-12 Score=122.59 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=123.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c-------------Cceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~-------------g~~~~~ 63 (272)
...++|+|||+|.||..||..++.+|+ +|+++ |++++.+++..+ . .++.+.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 385 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGT----PIVMK-DINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL 385 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC
Confidence 456789999999999999999999999 99999 999886543211 1 233444
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||-|++-+ .-++++.++.+..++++++.|.++++++..++..+. ..++++.|+..|...-.- .=+
T Consensus 386 ~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~l-vEv 463 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPL-VEV 463 (714)
T ss_pred CH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCce-Eee
Confidence 54 4578999999999754 346888999998999999999999999999988776 368999998877765433 334
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
..++.+++++.+.+..++..+|+. +.+.
T Consensus 464 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 492 (714)
T TIGR02437 464 IRGEKSSDETIATVVAYASKMGKTPIVVN 492 (714)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 568889999999999999999976 5554
No 89
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.51 E-value=3.1e-12 Score=121.90 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=121.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------CceeecC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLSD 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~~ 64 (272)
..+||+|||+|.||..||..++.+|+ +|+++ |++++.+++.. +. .++.+.+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 386 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGV----PVIMK-DINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLD 386 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 99988654321 11 2344455
Q ss_pred chhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEE
Q 024121 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~ 141 (272)
. +.+++||+||-|+|-+ .-.+++.++.+++++++++.|.++++++..+.+.+. ..++++.|+..|.....- .-+.
T Consensus 387 ~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~l-VEvv 464 (715)
T PRK11730 387 Y-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPL-VEVI 464 (715)
T ss_pred H-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccce-EEee
Confidence 5 4578999999999754 346888999998999999999999999999988776 367999998777764433 3345
Q ss_pred eCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 142 LGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
.++.++++.++.+..+++.+|+. +.+.
T Consensus 465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~ 492 (715)
T PRK11730 465 RGEKTSDETIATVVAYASKMGKTPIVVN 492 (715)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEec
Confidence 68888999999999999999975 5553
No 90
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.51 E-value=2.8e-12 Score=122.27 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=123.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c-------------Cceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~-------------g~~~~~ 63 (272)
...++|+|||+|.||..||..++.+|+ +|+++ |++++.+++..+ . .++.+.
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 407 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKGL----KTVLK-DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL 407 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCCC----cEEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 456789999999999999999999999 99999 999987544211 1 233445
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||-+|+-+ .-.+++.++.+..++++++.|.++++++..+++.+. ..++++.|+..|...-. ..-+
T Consensus 408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~-LvEv 485 (737)
T TIGR02441 408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ-LLEI 485 (737)
T ss_pred CH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc-eEEE
Confidence 55 4578999999999754 345888999998999999999999999999988776 36799999887776543 3335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
..++.++++.++.+..++..+|+. +.+.
T Consensus 486 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 514 (737)
T TIGR02441 486 ITHDGTSKDTLASAVAVGLKQGKVVIVVK 514 (737)
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 567889999999999999999976 5554
No 91
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.51 E-value=2.8e-12 Score=110.73 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=106.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-Cceeec-----------CchhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVKVLS-----------DNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~~~~~-----------~~~~~~~~aDivil 77 (272)
.|||+|||+|.||+.++..|.++|+ +|+++ .|+.++.+.+.+. |+.+.. ...+.....|+||+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~----~V~lv-~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv 76 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL----PVRLI-LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLL 76 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC----CeEEE-EechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEE
Confidence 5799999999999999999999999 99999 9988888877753 443311 11122357899999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEcc------Cchhhhc-CCceEEEeCCCCCHH
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMP------NTPSAVG-EAATVMSLGGTATEE 149 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~p------~~~~~~~-~g~~~~~~~~~~~~~ 149 (272)
|||..+..++++++.+.+.+++.|+++.+|+.. +.+++.++..+++.... ..|..+. .+...+..|.. +.+
T Consensus 77 ~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~-~~~ 155 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP-RNP 155 (305)
T ss_pred ECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCC-CCc
Confidence 999999999999999999999999999999986 56777777444443211 1222221 11111222322 234
Q ss_pred HHHHHHHHhhhcCCeEEcCc
Q 024121 150 DGELIGKLFGSVGKIWRADE 169 (272)
Q Consensus 150 ~~~~v~~ll~~~G~~~~~~e 169 (272)
..+.+.++|+..|......+
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~ 175 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTV 175 (305)
T ss_pred chHHHHHHHHhcCCCCccCH
Confidence 45667778887775444443
No 92
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.5e-12 Score=111.55 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=134.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeecCchhh---hccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAV---VEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~---~~~aDivil~v~ 80 (272)
+...||+||+|.||+.++.++.++|| .|.+| ||++++.+++.+. .+..+.+.+|. +++..-|+++|+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~----~Vavy-NRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVk 76 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGY----TVAVY-NRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVK 76 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCc----eEEEE-eCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEe
Confidence 45679999999999999999999999 99999 9999999988772 24455666654 568899999998
Q ss_pred c-ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH--h-C-CCCEEEEcc-CchhhhcCCceEEEeCCCCCHHHHHHH
Q 024121 81 P-QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW--T-G-HSRFIRVMP-NTPSAVGEAATVMSLGGTATEEDGELI 154 (272)
Q Consensus 81 ~-~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~--~-~-~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~v 154 (272)
. ..++.++++|.|+|.++.++|+--++.-.+++++. + . +..+++.-- +.-.-...|.+++. | ++++..+.+
T Consensus 77 AG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMp-G--G~~eay~~v 153 (473)
T COG0362 77 AGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMP-G--GQKEAYELV 153 (473)
T ss_pred cCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCC-C--CCHHHHHHH
Confidence 7 45789999999999999999986555444544432 2 2 344554311 11111234555553 3 389999999
Q ss_pred HHHhhhcC-----C-e-EEcCcccchhHHHch--HHHHH--HHHHHHHHHHHH-HcCCCHHHHHHHHHH
Q 024121 155 GKLFGSVG-----K-I-WRADEKLFDAITGLS--GPAYI--FLAIEALADGGV-AAGLPRELALGLASQ 211 (272)
Q Consensus 155 ~~ll~~~G-----~-~-~~~~e~~~~~~~~~~--~~~~~--~~~~~~l~~~~~-~~Gl~~~~a~~~~~~ 211 (272)
.++|+.+. . + .+++++..+.+.+.+ |.-|. ..+.|+.. ..+ ..|++.++..++...
T Consensus 154 ~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~-ilk~~lgls~~ei~~vF~~ 221 (473)
T COG0362 154 APILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYD-ILKDGLGLSAEEIAEVFEE 221 (473)
T ss_pred HHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHH
Confidence 99998773 2 2 568888777777766 33331 22333332 222 377887776665543
No 93
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.50 E-value=4.8e-12 Score=120.36 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=121.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------Cceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (272)
..++|+|||+|.||+.||..+. .+|+ +|+++ |++++.+++.. +. .++.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI----PVRIK-DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 4578999999999999999988 5899 99999 99987543321 11 234445
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||-|+|-+ .-.+++.++..+.++++++.|.++++++..+++.+. ..++++.|+..|..... ..-+
T Consensus 378 ~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~-lVEv 455 (699)
T TIGR02440 378 DY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP-LVEV 455 (699)
T ss_pred Ch-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc-eEEE
Confidence 55 4678999999999755 345888999988999999999999999999988775 36799999877775443 3335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
+.++.++++.++.+..+++.+|+. +++.
T Consensus 456 v~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 456 IPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 568889999999999999999975 6554
No 94
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.48 E-value=8.8e-12 Score=118.82 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=121.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------Cceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (272)
..+||+|||+|.||..||..++ .+|+ +|+++ |++++.+++.. +. .++.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 382 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL----PVRIK-DINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT 382 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC
Confidence 4678999999999999999999 8899 99999 99987544321 11 234445
Q ss_pred CchhhhccCCEEEEeeCcc--cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~--~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+. +.+++||+||-|++-+ .-.+++.++.++.+|++++.|.++++++..+++.+. ..++++.|+..|..... ..-+
T Consensus 383 ~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~-lVEv 460 (708)
T PRK11154 383 DY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMP-LVEV 460 (708)
T ss_pred Ch-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCc-eEEE
Confidence 55 5678999999999754 346888999998999999999999999999988765 36899999887776543 3335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024121 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~ 168 (272)
.+++.++++..+.+..+++.+|+. +.+.
T Consensus 461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 461 IPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 578889999999999999999975 5553
No 95
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.46 E-value=7.3e-12 Score=105.29 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=123.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivil~v~~~~~~~v~ 88 (272)
..+|||||.|+||.-+|..|.++|| .+..+ +|.. .-+...+.|....+.+.++++ +.|+|++||....++.++
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh----~li~h-sRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekil 125 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGH----GLICH-SRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKIL 125 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCc----eeEec-Ccch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHH
Confidence 4689999999999999999999999 99999 9875 333333367666666656554 799999999999999999
Q ss_pred HHhchh-cCCCCEEEEEcCC--CCHHHHHHHhC-CCCEEEEccCc-hhhh---cCCceEEEeCCC-----CCHHHHHHHH
Q 024121 89 MQIRPL-LSRKKLLVSVAAG--VKLKDLQEWTG-HSRFIRVMPNT-PSAV---GEAATVMSLGGT-----ATEEDGELIG 155 (272)
Q Consensus 89 ~~l~~~-l~~~~~iis~~~~--~~~~~l~~~~~-~~~~~~~~p~~-~~~~---~~g~~~~~~~~~-----~~~~~~~~v~ 155 (272)
...-+. ++.++++++..+- ...+.+.+++| +..++.+||.+ |.++ .+|...++-... .-++..+.+.
T Consensus 126 atypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fl 205 (480)
T KOG2380|consen 126 ATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFL 205 (480)
T ss_pred HhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHH
Confidence 877665 7888888865432 33456778888 68899999874 3323 345555543221 2378899999
Q ss_pred HHhhhcC-CeEEcCcccchhHHHch
Q 024121 156 KLFGSVG-KIWRADEKLFDAITGLS 179 (272)
Q Consensus 156 ~ll~~~G-~~~~~~e~~~~~~~~~~ 179 (272)
.+|...| +.++++-++||.++|=+
T Consensus 206 eIf~cegckmVemS~eeHDkiaAds 230 (480)
T KOG2380|consen 206 EIFACEGCKMVEMSYEEHDKIAADS 230 (480)
T ss_pred HHHHhcCCeEEEEEeecccccccch
Confidence 9999999 55899999999888754
No 96
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.45 E-value=3.2e-11 Score=100.20 Aligned_cols=206 Identities=19% Similarity=0.161 Sum_probs=139.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
..+.++|+|||+|+-|.+-+.+|.++|. +|.+- -|. ....++..+.|..+ .+..|+++++|+|++.+|+..-.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGl----nViiG-lr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~q~ 88 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGL----NVIIG-LRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQQK 88 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCC----cEEEE-ecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchhhHH
Confidence 4466899999999999999999999999 88776 453 33466777789887 47899999999999999999999
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhh-------cCCceEEE-eCCCCCHHHHHHHH
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATEEDGELIG 155 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~-------~~g~~~~~-~~~~~~~~~~~~v~ 155 (272)
+|++ +|.|.++.++.+. .+.|..+..-.-..| +..++-+-|-.|.+. +.|+..++ .....+....+...
T Consensus 89 ~vy~~~I~p~Lk~G~aL~-FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Al 167 (338)
T COG0059 89 EVYEKEIAPNLKEGAALG-FAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIAL 167 (338)
T ss_pred HHHHHHhhhhhcCCceEE-eccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHH
Confidence 9997 7999999998554 566766532111112 455666667666542 45665443 22344566788888
Q ss_pred HHhhhcC--Ce-EEc----Cccc---chhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Q 024121 156 KLFGSVG--KI-WRA----DEKL---FDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVT 221 (272)
Q Consensus 156 ~ll~~~G--~~-~~~----~e~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~ 221 (272)
.+...+| +. +.. .|.. ++.-+.+|| .+..++.+-.+.+.++|.+|+.|+--...-+.-..+++.
T Consensus 168 a~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcG--gl~~li~agfetLvEaGy~PE~AyfE~lhE~klIvdLiy 241 (338)
T COG0059 168 AYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCG--GLQALIKAGFETLVEAGYQPELAYFECLHELKLIVDLIY 241 (338)
T ss_pred HHHHhcCCCccceEeeeeHHhhhcccccchhhhhh--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999998 22 321 2323 333344441 222333444456778999999987655444444444443
No 97
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.45 E-value=6.9e-13 Score=101.25 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=81.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+.++|+|||+|..|.+.|.+|.++|+ +|.+. .|..+ ..++.++.|.++. +..|+++++|+|++.+|+....++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~----~V~Vg-lr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~q~~v 76 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV----NVIVG-LREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEVQPEV 76 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-----EEEEE-E-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC----CEEEE-ecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHHHHHH
Confidence 56899999999999999999999999 99988 67655 6677777898874 678999999999999999999999
Q ss_pred H-HHhchhcCCCCEEEEEcCCCCHHHHHHHhC--CCCEEEEccCchh
Q 024121 88 A-MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPS 131 (272)
Q Consensus 88 ~-~~l~~~l~~~~~iis~~~~~~~~~l~~~~~--~~~~~~~~p~~~~ 131 (272)
+ +++.|+++++++++ ++.|..+.. ....+ +..++-+.|..|.
T Consensus 77 y~~~I~p~l~~G~~L~-fahGfni~~-~~i~pp~~vdV~mvAPKgpG 121 (165)
T PF07991_consen 77 YEEEIAPNLKPGATLV-FAHGFNIHY-GLIKPPKDVDVIMVAPKGPG 121 (165)
T ss_dssp HHHHHHHHS-TT-EEE-ESSSHHHHC-TTS---TTSEEEEEEESSSC
T ss_pred HHHHHHhhCCCCCEEE-eCCcchhhc-CcccCCCCCeEEEEecCCCC
Confidence 8 77999999998877 456654421 11111 3455656666554
No 98
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.43 E-value=3.4e-11 Score=106.22 Aligned_cols=207 Identities=17% Similarity=0.158 Sum_probs=139.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC------HHHHHHHHHcCceeecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
...++|+|||+|.+|.+.|.+|...|+ +|.+- -|. .+..+++.+.|..+ .+..|++++||+|++.+|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGv----nVvvg-lr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPD 107 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPD 107 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccc----eeEEe-ccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCCh
Confidence 456899999999999999999999999 88855 333 33455555678766 5788999999999999999
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhh-------cCCceEEE-eC--CCCCHHH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV-------GEAATVMS-LG--GTATEED 150 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~-------~~g~~~~~-~~--~~~~~~~ 150 (272)
..-..+.+++.++++++.++. .+-|..+..-.-..+ +..++-+-|-.|... +.|+..++ .- .+.+...
T Consensus 108 t~q~~v~~~i~p~LK~Ga~L~-fsHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a 186 (487)
T PRK05225 108 KQHSDVVRAVQPLMKQGAALG-YSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG 186 (487)
T ss_pred HHHHHHHHHHHhhCCCCCEEE-ecCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchH
Confidence 876677788999999998766 456665532211122 466777767655432 45655433 22 3456667
Q ss_pred HHHHHHHhhhcCCe---EE-c---Ccc---cchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 024121 151 GELIGKLFGSVGKI---WR-A---DEK---LFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV 220 (272)
Q Consensus 151 ~~~v~~ll~~~G~~---~~-~---~e~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~ 220 (272)
.+.+..+-..+|.. +. . .|. .++.-+.++| .+....++..+...+.|.+++.|+..+..+.....+++
T Consensus 187 ~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG--~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~i 264 (487)
T PRK05225 187 MAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCG--MLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEAL 264 (487)
T ss_pred HHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHh--HHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHHHH
Confidence 88888888898832 22 1 222 2333334441 12233345555677899999999987777766666665
Q ss_pred Hhc
Q 024121 221 TKS 223 (272)
Q Consensus 221 ~~~ 223 (272)
.+.
T Consensus 265 ~e~ 267 (487)
T PRK05225 265 KQG 267 (487)
T ss_pred Hhc
Confidence 443
No 99
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.39 E-value=5.8e-12 Score=97.59 Aligned_cols=108 Identities=21% Similarity=0.333 Sum_probs=87.3
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc--------------hhhhccCCEEEEe
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN--------------NAVVEYSDVVVFS 78 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~--------------~~~~~~aDivil~ 78 (272)
|+|+|+|.||..+|..|.+.|+ +|.++ .|++ +.+.+.+.|+.+.... .+....+|+||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~----~V~l~-~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH----DVTLV-SRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC----EEEEE-ESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCCC----ceEEE-Eccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence 7899999999999999999999 99999 8988 7777777665432211 1346789999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEc
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVM 126 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~ 126 (272)
|+..+.+++++.+.+++.+++.|+.+.+|+.. +.+++.++..++...+
T Consensus 75 vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 75 VKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGSGEEEEE
T ss_pred ecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCCcEEEEE
Confidence 99999999999999999999899999999985 5677777644554433
No 100
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.38 E-value=8.1e-11 Score=101.77 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-------HH-----------HHHHc-------------CceeecC--chh
Q 024121 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKR-------RD-----------AFESI-------------GVKVLSD--NNA 67 (272)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-------~~-----------~l~~~-------------g~~~~~~--~~~ 67 (272)
||..||..++.+|+ +|.+| |++++. ++ .+.+. .++.+.+ ..+
T Consensus 1 MG~giA~~~a~~G~----~V~l~-d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 75 (314)
T PRK08269 1 MGQGIALAFAFAGH----DVTLI-DFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAAD 75 (314)
T ss_pred CcHHHHHHHHhCCC----eEEEE-eCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHH
Confidence 79999999999999 99999 998842 11 11111 1333333 457
Q ss_pred hhccCCEEEEeeCcc-cH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCC
Q 024121 68 VVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (272)
Q Consensus 68 ~~~~aDivil~v~~~-~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~ 144 (272)
++++||+||.|||.+ ++ ..++.++.+.+++++++.|.++++++..+++.+. ..++++.|+..|..... ..-+..++
T Consensus 76 a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~-lvEVv~g~ 154 (314)
T PRK08269 76 ALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMP-LVEVSPSD 154 (314)
T ss_pred HhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCc-eEEEeCCC
Confidence 789999999999855 44 4566778888899999999999999999988775 35788888876665433 23345677
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024121 145 TATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALADGGVAAGLPRELALGLASQT 212 (272)
Q Consensus 145 ~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~ 212 (272)
.++++.++.+.++++.+|+. +++++.. +.+ ..-.+...+.|++. .+.+.|+++++...++..+
T Consensus 155 ~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gfi---~nri~~~~l~EAl~-l~e~g~~~~e~iD~a~~~g 218 (314)
T PRK08269 155 ATDPAVVDRLAALLERIGKVPVVCGPSP-GYI---VPRIQALAMNEAAR-MVEEGVASAEDIDKAIRTG 218 (314)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEecCCC-Ccc---hHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHhC
Confidence 88999999999999999965 6666542 111 11222334445554 4567778888888777544
No 101
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.36 E-value=1.3e-11 Score=117.16 Aligned_cols=188 Identities=13% Similarity=0.157 Sum_probs=136.9
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHH---HHHhCC--CCEEEEccCchhh-----------hcCCce
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL---QEWTGH--SRFIRVMPNTPSA-----------VGEAAT 138 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l---~~~~~~--~~~~~~~p~~~~~-----------~~~g~~ 138 (272)
||+|+|+..+.+++.++.++++++++|.|+ ++++...+ .+.++. .++++.||....+ +.....
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv-~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDA-GSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEec-CcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 689999999999999999999888777765 55665443 344442 3588888863221 223346
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCC-eEEcCcccchhHHHch--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 024121 139 VMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLS--GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 215 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g 215 (272)
++++.+..+++.++.++++++.+|. .+.+++++||.+++++ .|++++. +++....+.- +.+....+...+|++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~---~l~~~~~~~~-~~~~~~~~a~~gfrd 155 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSF---ALVEQILGES-DAELKFSYAAGGFRD 155 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHH---HHHHHHhhcc-ChhHHHHhcccchhc
Confidence 6787777788899999999999995 5889999999999987 7777654 4443332221 455566889999999
Q ss_pred HHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024121 216 AASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 270 (272)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~~~~~~~~r~~~ 270 (272)
+++++. .+|.+|.+.+.++.....+.|+.+.+. .++..+. +.+.+.++++++
T Consensus 156 ~tRia~---~~p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 213 (673)
T PRK11861 156 FTRIAA---SSPEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEAVFARSRA 213 (673)
T ss_pred cccccc---CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 998874 589999999999988877877777664 4555553 456666655543
No 102
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.36 E-value=1.5e-10 Score=105.02 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=122.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHHHHHHHHc-------------------CceeecCchhh
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNNAV 68 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~ 68 (272)
+|||+|||+|.+|..+|..|.+.| + +|+++ |+++++.+.+.+. .+..+++..++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~----~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~ 75 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDI----EVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH 75 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCC----eEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence 589999999999999999999885 6 79999 9999998876541 13345556677
Q ss_pred hccCCEEEEeeC-cc--------------cHHHHHHHhchhcCCCCEEEEE--cCCCCHHHHHHHhC----CCC-EEEEc
Q 024121 69 VEYSDVVVFSVK-PQ--------------VVKDVAMQIRPLLSRKKLLVSV--AAGVKLKDLQEWTG----HSR-FIRVM 126 (272)
Q Consensus 69 ~~~aDivil~v~-~~--------------~~~~v~~~l~~~l~~~~~iis~--~~~~~~~~l~~~~~----~~~-~~~~~ 126 (272)
+++||++|+||| |. .+.+++.+|.++++++++||-- ..+-+.+.+.+.+. +.. .+...
T Consensus 76 i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~ 155 (473)
T PLN02353 76 VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSN 155 (473)
T ss_pred HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEEC
Confidence 899999999994 21 4677888899999889888732 22222344444332 111 12222
Q ss_pred cC-----chhhhcCCc-eEEEeCCC--CCHHHHHHHHHHhhhcC--CeEEcCcccchhHHHchHHHH---HHHHHHHHHH
Q 024121 127 PN-----TPSAVGEAA-TVMSLGGT--ATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGPAY---IFLAIEALAD 193 (272)
Q Consensus 127 p~-----~~~~~~~g~-~~~~~~~~--~~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~~~~~~~~---~~~~~~~l~~ 193 (272)
|- ....-.... -++..+.+ ..++..+.++.+++.+- ..+....-....++++..+.| -..+++.++.
T Consensus 156 PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~ 235 (473)
T PLN02353 156 PEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (473)
T ss_pred CCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 111111111 12323321 11445788888888774 234444333455556553333 2346677777
Q ss_pred HHHHcCCCHHHHHHHHH
Q 024121 194 GGVAAGLPRELALGLAS 210 (272)
Q Consensus 194 ~~~~~Gl~~~~a~~~~~ 210 (272)
.+.+.|+|..+..+.+.
T Consensus 236 lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 236 LCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHhCCCHHHHHHHhC
Confidence 88899999887765544
No 103
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=8.5e-10 Score=95.46 Aligned_cols=245 Identities=18% Similarity=0.225 Sum_probs=148.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (272)
|||+|||+|-.|...+.+|.+.|| +|... |.++++.+.+.+ .| +..++|..++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH----eVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~ 75 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH----EVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK 75 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh
Confidence 899999999999999999999999 99999 999999876654 12 456778888899
Q ss_pred cCCEEEEeeC--cc--------cHHHHHHHhchhcCCCCEEEEEcCCCC---HHHHHHHhC-C--CCEEEEccCchhhhc
Q 024121 71 YSDVVVFSVK--PQ--------VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG-H--SRFIRVMPNTPSAVG 134 (272)
Q Consensus 71 ~aDivil~v~--~~--------~~~~v~~~l~~~l~~~~~iis~~~~~~---~~~l~~~~~-~--~~~~~~~p~~~~~~~ 134 (272)
++|++|+||+ ++ .++.+.+.+.++++..++||. -|+++ .+.+++.+. . .+-..+.. .|.-.+
T Consensus 76 ~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~-KSTVPvGt~~~v~~~i~~~~~~~~f~v~~-NPEFLR 153 (414)
T COG1004 76 DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI-KSTVPVGTTEEVRAKIREENSGKDFEVAS-NPEFLR 153 (414)
T ss_pred cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE-cCCCCCCchHHHHHHHHhhcccCCceEec-ChHHhc
Confidence 9999999994 32 356777888888866666663 23444 345555443 1 11111111 244344
Q ss_pred CCceE--------EEeCCCCCHHHHHHHHHHhhhc---CCeEEcCcccchhHHHchHHHHHH---HHHHHHHHHHHHcCC
Q 024121 135 EAATV--------MSLGGTATEEDGELIGKLFGSV---GKIWRADEKLFDAITGLSGPAYIF---LAIEALADGGVAAGL 200 (272)
Q Consensus 135 ~g~~~--------~~~~~~~~~~~~~~v~~ll~~~---G~~~~~~e~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~Gl 200 (272)
+|..+ +..|. .++.+.+.+++++..+ ...+......-..+.+...++|++ .+++.+.+.+++.|+
T Consensus 154 EG~Av~D~~~PdRIViG~-~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~ 232 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGV-RSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGA 232 (414)
T ss_pred CcchhhhccCCCeEEEcc-CChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44321 12232 1334567777787665 333333322223444444556654 366777788899999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 024121 201 PRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSR 269 (272)
Q Consensus 201 ~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l~~~~~~~~~~~~~~~~~~r~~ 269 (272)
|-.+..+.+..--+=...+ .+.|.. -..-|-|+ =|.+.++..++.+....+.+++.+..++-+
T Consensus 233 D~~~V~~gIGlD~RIG~~f-l~aG~G----yGGsCfPK-D~~AL~~~a~~~~~~~~ll~avv~vN~~qk 295 (414)
T COG1004 233 DVKQVAEGIGLDPRIGNHF-LNAGFG----YGGSCFPK-DTKALIANAEELGYDPNLLEAVVEVNERRK 295 (414)
T ss_pred CHHHHHHHcCCCchhhHhh-CCCCCC----CCCcCCcH-hHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9877655443211111111 111111 01122232 255667777888888888888877776644
No 104
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.22 E-value=7.7e-11 Score=94.16 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=67.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------------cCceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------------~g~~~~~~~~~~~~ 70 (272)
|||+|||+|.+|..+|..|.++|| +|+++ |.++++.+.+.+ .++..+.+..+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~----~V~g~-D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~ 75 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH----QVIGV-DIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK 75 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS----EEEEE--S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC----EEEEE-eCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh
Confidence 899999999999999999999999 99999 999998877654 12345667778899
Q ss_pred cCCEEEEeeCcc----------cHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 71 ~aDivil~v~~~----------~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
++|++|+|||.. .+.++++++.++++++++||- -+++++
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvpp 124 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPP 124 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSST
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEE
Confidence 999999999621 267788899999999888773 344443
No 105
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.5e-09 Score=86.79 Aligned_cols=240 Identities=14% Similarity=0.086 Sum_probs=145.6
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEe
Q 024121 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~ 78 (272)
|.++......+.++|||+|..|.+...+-.+.++ ... +. .|++++++.|.+ .+... .+.+...+-.+++|.-
T Consensus 1 ~~s~~~~~~~v~~~~vgtgrl~ra~~~ra~h~~~----~cs~i~-srS~~~a~~LaE~~~a~p-~d~~~~ael~~~vfv~ 74 (289)
T COG5495 1 MVSDGLRPARVVVGIVGTGRLGRAALLRADHVVV----ACSAIS-SRSRDRAQNLAETYVAPP-LDVAKSAELLLLVFVD 74 (289)
T ss_pred CcCcCccceeeEEEEeecchHHHHHHHHhcchhe----eehhhh-hcCHHHHhhchhccCCCc-cchhhChhhhceEEec
Confidence 5566666667899999999999996555555554 433 44 888888888776 33322 2333445567888888
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCch-----hhhc--CCceEEEeCCCCCHHH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTP-----SAVG--EAATVMSLGGTATEED 150 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~-----~~~~--~g~~~~~~~~~~~~~~ 150 (272)
+|+..+..+...-. .+|++++++|++....+.+.+.-. ++--..+||+.. .... .+.. + .....|+-.
T Consensus 75 vpd~~~s~vaa~~~--~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~-~-~i~eaD~~g 150 (289)
T COG5495 75 VPDALYSGVAATSL--NRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTI-F-GITEADDVG 150 (289)
T ss_pred chHHHHHHHHHhcc--cCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccE-E-Eeecccccc
Confidence 88886666654433 479999999977666666655322 344456677532 1111 1221 1 222345666
Q ss_pred HHHHHHHhhhcC-CeEEcCcccchhHHHch--HHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024121 151 GELIGKLFGSVG-KIWRADEKLFDAITGLS--GPAYIF-LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 226 (272)
Q Consensus 151 ~~~v~~ll~~~G-~~~~~~e~~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~ 226 (272)
...++++...+| ..+.+.+++.-.+.+.. ..+|+. .+.+++ +..+..|+|..++.--+.+.+.|+.+..++++..
T Consensus 151 ~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~-~i~~aag~Dq~e~iv~~~pL~~g~~~n~~qrg~a 229 (289)
T COG5495 151 YAIVQSLALEMGGEPFCVREEARILYHAAAVHASNFIVTVLADAL-EIYRAAGDDQPELIVEVGPLARGALENTLQRGQA 229 (289)
T ss_pred cHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHH-HHHHHhcCCCcceeeeehHHHHHHHHHHHHhhhh
Confidence 788999999998 45777776544443322 333333 333332 3456788886665544566788888777664432
Q ss_pred HHHHHHhcCCC-cchHHHHHHHHHhCC
Q 024121 227 PGQLKDDVASP-GGTTIAGIHELEKSG 252 (272)
Q Consensus 227 ~~~l~~~~~~~-~g~t~~~l~~l~~~~ 252 (272)
-.+..-+.-- ++..++.+..|++-+
T Consensus 230 -~aLTgpVaRGD~~vve~hl~al~~ig 255 (289)
T COG5495 230 -CALTGPVARGDWQVVEEHLRALEKIG 255 (289)
T ss_pred -hcccCCcccCcHHHHHHHHHHHHHhh
Confidence 1344444332 246677788887753
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.16 E-value=5.3e-10 Score=97.33 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~ 84 (272)
.....++|||||+|+||+++|+.|...|+ +|.+| +|+++..... .....+..+++++||+|++++|... .
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~----~V~~~-d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t 212 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA----TITAY-DAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKES 212 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHH
Confidence 34566899999999999999999999999 99999 9987653321 2234578899999999999998653 3
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
..++ .++.+.++++.++|+++-|. ..+.+.+.+.
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 4444 56777789999999987664 3455666665
No 107
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.16 E-value=4.2e-11 Score=95.43 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c------------
Q 024121 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I------------ 57 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~------------ 57 (272)
|++-.++..++.++|||.|.||+.||+--+.+|+ +|+++ ++++..+.+..+ .
T Consensus 2 ~s~s~~~~~~~~V~ivGaG~MGSGIAQv~a~sg~----~V~l~-d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~ 76 (298)
T KOG2304|consen 2 MSASANMAEIKNVAIVGAGQMGSGIAQVAATSGL----NVWLV-DANEDALSRATKAISSSLKRVAKKKKADDPVALEEF 76 (298)
T ss_pred cccccccccccceEEEcccccchhHHHHHHhcCC----ceEEe-cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHH
Confidence 4555667677889999999999999999999999 99999 999876544322 0
Q ss_pred ------CceeecCchhhhccCCEEEEeeC--cccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccC
Q 024121 58 ------GVKVLSDNNAVVEYSDVVVFSVK--PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPN 128 (272)
Q Consensus 58 ------g~~~~~~~~~~~~~aDivil~v~--~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~ 128 (272)
-++.+++..+++.++|+||-++- -+.-++++.++....++++++.+.++++.+.++...+. ..++.+.|..
T Consensus 77 v~~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFf 156 (298)
T KOG2304|consen 77 VDDTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFF 156 (298)
T ss_pred HHHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeecc
Confidence 01234566778889999998862 23345777777776778888888888888888877665 3567777755
Q ss_pred chhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCeE
Q 024121 129 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 165 (272)
Q Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~~ 165 (272)
.|..+-.-+.++ .++..+++++..+..+-+++|+..
T Consensus 157 NPvPvMKLvEVi-r~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 157 NPVPVMKLVEVI-RTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred CCchhHHHhhhh-cCCCCCHHHHHHHHHHHHHhCCCc
Confidence 555443333333 456678999999999999999763
No 108
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.15 E-value=1e-09 Score=92.69 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=97.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC--C-CCCCcEEEEeCCCHHH---HHHHHH------------------cCceeec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSG--V-LPPDRICTAVHSNLKR---RDAFES------------------IGVKVLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g--~-~~~~~V~v~~~r~~~~---~~~l~~------------------~g~~~~~ 63 (272)
++..||+|||.|+||+++++.+.++- + .-..+|..| -+..+. .+.|-+ .++.+.+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmw-v~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMW-VFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEE-EeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 34579999999999999999887642 1 012367777 332211 112211 2345667
Q ss_pred CchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHH-----------HHHHHhCCCCEEEE-ccCchh
Q 024121 64 DNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-----------DLQEWTGHSRFIRV-MPNTPS 131 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~-----------~l~~~~~~~~~~~~-~p~~~~ 131 (272)
|..+++.+||+++..+|++.+..++++|..+++++...||+..|+... .+.+.++ .++.-. -||...
T Consensus 98 dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaNiA~ 176 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGANIAS 176 (372)
T ss_pred hHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCchHH
Confidence 889999999999999999999999999999999999999999887642 2334444 232222 256555
Q ss_pred hhcCCc---eEEEeCCCCCHHHHHHHHHHhhhcC
Q 024121 132 AVGEAA---TVMSLGGTATEEDGELIGKLFGSVG 162 (272)
Q Consensus 132 ~~~~g~---~~~~~~~~~~~~~~~~v~~ll~~~G 162 (272)
++.+.. +.+.+.+ +.+.-..+..+|+.-.
T Consensus 177 EVa~~~f~e~tIg~~~--~~~~~~~l~~lf~~p~ 208 (372)
T KOG2711|consen 177 EVANEKFCETTIGYKD--KKEAGILLKKLFRTPY 208 (372)
T ss_pred HHHhccccceeEeccc--hhhcchHHHHHhCCCc
Confidence 553322 2333221 2333345788887655
No 109
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=9.2e-09 Score=88.89 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=122.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeecCchhhhc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (272)
++||+||+|-+|.++|..+.++|+ +|..+ |.++.+.+.+.+ .| ++.+++.++ ++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~----~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF----KVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC----ceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cc
Confidence 899999999999999999999999 99999 999988766543 12 455666655 56
Q ss_pred cCCEEEEeeCcc----------cHHHHHHHhchhcCCCCEEE--EEcCCCCHHHHHHHh-C---C----CCE-E-----E
Q 024121 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLV--SVAAGVKLKDLQEWT-G---H----SRF-I-----R 124 (272)
Q Consensus 71 ~aDivil~v~~~----------~~~~v~~~l~~~l~~~~~ii--s~~~~~~~~~l~~~~-~---~----~~~-~-----~ 124 (272)
.||++++|||.. .+.+..+.|.+.|++|.+|| |++-.-+.+.+...+ . + ..+ + |
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 999999999631 24556677899999999988 333322344433222 1 1 122 1 3
Q ss_pred EccCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCC-eEEcCcccchhHHHchHHHH---HHHHHHHHHHHHHHcCC
Q 024121 125 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGPAY---IFLAIEALADGGVAAGL 200 (272)
Q Consensus 125 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~e~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gl 200 (272)
.+|+.....-....=+..| .+++..+.+..+.+.+=. .+.++......+.++.-+.| -..+++.|+-.+.+.|+
T Consensus 164 v~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GI 241 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGI 241 (436)
T ss_pred cCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCC
Confidence 3343322111111113334 367788888888888753 45555554445555541111 12345566667789999
Q ss_pred CHHHHHHHHH
Q 024121 201 PRELALGLAS 210 (272)
Q Consensus 201 ~~~~a~~~~~ 210 (272)
+.-++.+++.
T Consensus 242 dvwevIeaAn 251 (436)
T COG0677 242 DVWEVIEAAN 251 (436)
T ss_pred cHHHHHHHhc
Confidence 9877766654
No 110
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.11 E-value=5.2e-08 Score=79.33 Aligned_cols=156 Identities=20% Similarity=0.202 Sum_probs=111.8
Q ss_pred CCeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCH-----HHHHHHHHcCceeecC
Q 024121 10 SFILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNL-----KRRDAFESIGVKVLSD 64 (272)
Q Consensus 10 ~~~IgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~-----~~~~~l~~~g~~~~~~ 64 (272)
+|||++.|+||- |+.||-.+.++|| +|.+. +.|. +..++....|+.+.+|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH----DVVLa-ePn~d~~dd~~w~~vedAGV~vv~d 75 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH----DVVLA-EPNRDIMDDEHWKRVEDAGVEVVSD 75 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC----cEEee-cCCccccCHHHHHHHHhcCcEEecC
Confidence 478999999974 7889999999999 99998 7654 3456666689999999
Q ss_pred chhhhccCCEEEEeeCcc-cHHHHHHHhchhcCCCCEEEEEcCCCCHH---HHHHHhC----CCCEEEEccC-chhhhcC
Q 024121 65 NNAVVEYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG----HSRFIRVMPN-TPSAVGE 135 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~~~---~l~~~~~----~~~~~~~~p~-~~~~~~~ 135 (272)
..++++++++.++-+|-. ..-.+...|.+++..+.+|++++...+.. .++..+. +..+...||. .|..-.+
T Consensus 76 D~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h 155 (340)
T COG4007 76 DAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQH 155 (340)
T ss_pred chhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCC
Confidence 899999999999999966 67788889999998998888765543332 2333332 2334455542 2333345
Q ss_pred CceEEEeC-----CCCCHHHHHHHHHHhhhcCCe-EEcCcc
Q 024121 136 AATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEK 170 (272)
Q Consensus 136 g~~~~~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~ 170 (272)
+..++... +-.++++.+++.++.+..|+. +.++.+
T Consensus 156 ~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pad 196 (340)
T COG4007 156 GHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPAD 196 (340)
T ss_pred ceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHH
Confidence 55554411 114678999999999999987 555543
No 111
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.11 E-value=1.5e-10 Score=89.96 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=69.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-cCc----eeecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGV----KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~g~----~~~~~~~~~~~~aDivil~v~~ 81 (272)
.+.++|+|||+|.||.++++.|.+.| + +|++| +|++++.+++.+ .+. ....+..++++++|+||.|+|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~----~v~v~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~ 91 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAA----KIVIV-NRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPV 91 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCC----EEEEE-cCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCC
Confidence 45689999999999999999999986 5 89999 999988877665 332 1334566778899999999988
Q ss_pred ccH--HHHHHHhchhcCCCCEEEEEcC
Q 024121 82 QVV--KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 82 ~~~--~~v~~~l~~~l~~~~~iis~~~ 106 (272)
... ..+... ...+++++++++++.
T Consensus 92 ~~~~~~~~~~~-~~~~~~~~~v~D~~~ 117 (155)
T cd01065 92 GMKPGDELPLP-PSLLKPGGVVYDVVY 117 (155)
T ss_pred CCCCCCCCCCC-HHHcCCCCEEEEcCc
Confidence 764 222111 123578888888743
No 112
>PRK07574 formate dehydrogenase; Provisional
Probab=99.10 E-value=8.1e-10 Score=97.56 Aligned_cols=107 Identities=15% Similarity=0.235 Sum_probs=82.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+++.|..-|. +|.+| +|+....+.....|+....+.++++++||+|++++|.. +.+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~ 263 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV----KLHYT-DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETE 263 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHH
Confidence 3566899999999999999999999999 99999 99864333333467765678899999999999999854 566
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++. +....++++.++|++.-|- ..+.|.+.+.
T Consensus 264 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 264 HLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred HHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 7764 4666789999999886553 3355655554
No 113
>PLN03139 formate dehydrogenase; Provisional
Probab=99.09 E-value=1.1e-09 Score=96.76 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~ 85 (272)
....++|||||+|+||..+++.|..-|. +|.+| +|+....+...+.|+....+.++++++||+|++++|. ...+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~ 270 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC----NLLYH-DRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTR 270 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC----EEEEE-CCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHH
Confidence 4567899999999999999999999998 99999 9875444444446776666889999999999999985 4566
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++. ++...++++.++|++.-|- ..+.+.+.+.
T Consensus 271 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 271 GMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred HHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 6663 4666789999999886553 3455666664
No 114
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.07 E-value=1.7e-09 Score=94.34 Aligned_cols=105 Identities=21% Similarity=0.244 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+|+.|...|+ +|.+| +|++... .....++.. .+.++++++||+|++++|.. ..+
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~ 219 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM----RILYY-SRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETY 219 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHh
Confidence 4567899999999999999999999998 99999 9986443 222345543 47889999999999999854 455
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++-|- ..+.+.+.+.
T Consensus 220 ~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 220 HMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred hccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 555 35666788999999886553 3456666665
No 115
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.05 E-value=1.2e-09 Score=92.52 Aligned_cols=89 Identities=15% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeecCchhhhccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~aDivil~v~~~ 82 (272)
|+.+||||||+|.||..++..|.+. ++ ++. +| +|++++.+.+.+ .|. ..+.+.++++.++|+|++|+|++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~----el~aV~-dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGL----TLSAVA-VRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCe----EEEEEE-CCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH
Confidence 3568999999999999999999873 55 665 77 999998877766 453 45678888889999999999998
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
...++..+.. ..++.++..
T Consensus 79 ~h~e~~~~aL---~aGk~Vi~~ 97 (271)
T PRK13302 79 VLRAIVEPVL---AAGKKAIVL 97 (271)
T ss_pred HHHHHHHHHH---HcCCcEEEe
Confidence 8877776554 345544533
No 116
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.04 E-value=1.9e-09 Score=91.26 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=65.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+|||||||+|+||..++..+.+.+. . .+ +.+| +|++++.+.+.+ .+.....+.++++.++|+|++|+|++...++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~-~-~elv~v~-d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~ 77 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRI-N-AELYAFY-DRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEV 77 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCC-C-eEEEEEE-CCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHH
Confidence 3799999999999999999987641 1 14 5578 999998888766 5677778888888899999999999888887
Q ss_pred HHHhch
Q 024121 88 AMQIRP 93 (272)
Q Consensus 88 ~~~l~~ 93 (272)
..++..
T Consensus 78 ~~~al~ 83 (265)
T PRK13304 78 VPKSLE 83 (265)
T ss_pred HHHHHH
Confidence 776553
No 117
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=6.8e-09 Score=88.07 Aligned_cols=193 Identities=16% Similarity=0.216 Sum_probs=127.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cC--ceeecCchhh---hccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IG--VKVLSDNNAV---VEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g--~~~~~~~~~~---~~~aDivil~v~~ 81 (272)
.+.||.||++.||+.++.+..++|| .|.+| ||+..+.+++.+ .| +....++++. +++...|++.|+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf----~v~~y-NRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkA 80 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGF----TVCAY-NRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKA 80 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCc----eEEEe-ccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeC
Confidence 3689999999999999999999999 99999 999999988776 23 3334666665 4578899999976
Q ss_pred c-cHHHHHHHhchhcCCCCEEEEEcCCCCHHH---HHHHhC-CCCEEEEc-cCchhhhcCCceEEEeCCCCCHHHHHHHH
Q 024121 82 Q-VVKDVAMQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG-HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 82 ~-~~~~v~~~l~~~l~~~~~iis~~~~~~~~~---l~~~~~-~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
. .+...+++|.|++.++.+||+--+..-.+. .++... +.-++++- .+.-.-.+.|..++ +| ++++..+.++
T Consensus 81 G~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlM-pG--g~~~Awp~ik 157 (487)
T KOG2653|consen 81 GAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLM-PG--GSKEAWPHIK 157 (487)
T ss_pred CCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccC-CC--CChHHHHHHH
Confidence 5 578888999999999999998544332222 222222 22244321 11111113344544 34 4789999999
Q ss_pred HHhhhcC-------Ce-EEcCcccchhHHHch--HHHH--HHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Q 024121 156 KLFGSVG-------KI-WRADEKLFDAITGLS--GPAY--IFLAIEALADGGVA-AGLPRELALGLASQ 211 (272)
Q Consensus 156 ~ll~~~G-------~~-~~~~e~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~-~Gl~~~~a~~~~~~ 211 (272)
++|+.+. .+ .++++...+.+.+.+ +.-| +..+.|+.- ..++ .|++.++..++...
T Consensus 158 ~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~-vlk~~~gls~~eia~vF~~ 225 (487)
T KOG2653|consen 158 DIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYD-VLKSVLGLSNDEIAEVFDD 225 (487)
T ss_pred HHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHH-HHHHhcCCcHHHHHHHHHh
Confidence 9998652 22 567887777777766 3222 123334432 2344 77887776666543
No 118
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.02 E-value=1.3e-09 Score=95.19 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=75.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
.....++|||||+|+||+++++.|. ..|. +|++| ++++.... ..++....+.++++++||+|++++|....
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~----~V~~~-d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~ 213 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS----DVVAY-DPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKY 213 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcc
Confidence 3456789999999999999999994 4577 89999 98764421 12344445788999999999999987643
Q ss_pred -HHHH-HHhchhcCCCCEEEEEcCCCCH--HHHHHHhC
Q 024121 85 -KDVA-MQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG 118 (272)
Q Consensus 85 -~~v~-~~l~~~l~~~~~iis~~~~~~~--~~l~~~~~ 118 (272)
+.++ .+..+.++++.++|+++.|... +.+.+.+.
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 3333 3455668899999998876543 44544443
No 119
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.99 E-value=1e-07 Score=81.79 Aligned_cols=137 Identities=17% Similarity=0.270 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--------------cCchhhhccCCEEEEeeCcccHH
Q 024121 20 KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--------------SDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 20 ~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--------------~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.||+.+|..|.++|+ +|+++ .|+ ++.+.+.+.|+.+. .++++ ..++|+||+|||..++.
T Consensus 1 aiG~~~a~~L~~~G~----~V~l~-~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~ 73 (293)
T TIGR00745 1 AVGSLYGAYLARAGH----DVTLL-ARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTE 73 (293)
T ss_pred CchHHHHHHHHhCCC----cEEEE-ecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHH
Confidence 379999999999999 99999 997 66777766554321 12233 56899999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCH-HHHHHHhCCCCEEEEccC------chhh---hcCCceEEEeCCCCCHHHHHHHH
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMPN------TPSA---VGEAATVMSLGGTATEEDGELIG 155 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~-~~l~~~~~~~~~~~~~p~------~~~~---~~~g~~~~~~~~~~~~~~~~~v~ 155 (272)
++++.+.+++.++++|+++.+|+.. +.+.+.++..+++..... .|.. .+.+...+...+. ..+..+.+.
T Consensus 74 ~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~~~~~~l~ 152 (293)
T TIGR00745 74 EAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-ENEAVEALA 152 (293)
T ss_pred HHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-chHHHHHHH
Confidence 9999999999999999999999875 567776663344322211 1111 1222222222111 224556777
Q ss_pred HHhhhcCCe
Q 024121 156 KLFGSVGKI 164 (272)
Q Consensus 156 ~ll~~~G~~ 164 (272)
++|+..|..
T Consensus 153 ~~l~~~~~~ 161 (293)
T TIGR00745 153 ELLNEAGIP 161 (293)
T ss_pred HHHHhCCCC
Confidence 788777744
No 120
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.99 E-value=2.2e-09 Score=85.46 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=76.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
+....++|||||+|++|+.+++.+..-|. +|.+| +|+..........++.. .+.++++++||+|++++|.. ..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~~~~~~~~~~~~-~~l~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM----RVIGY-DRSPKPEEGADEFGVEY-VSLDELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSCHHHHHHHHTTEEE-SSHHHHHHH-SEEEE-SSSSTTT
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc----eeEEe-cccCChhhhccccccee-eehhhhcchhhhhhhhhcccccc
Confidence 34456899999999999999999999999 99999 99876655445566644 58899999999999999843 23
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++ .+....++++.++|++.-| +..+.+.+.+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 3333 2334457889999987654 34456666664
No 121
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.92 E-value=1.2e-08 Score=87.13 Aligned_cols=92 Identities=14% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cCchhhhccCCEEEEeeCcccH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDivil~v~~~~~ 84 (272)
....++++|||+|.||.++++.|...|. +|+++ +|++++...+.+.|.... .+..+.++++|+||.++|...+
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~----~V~v~-~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii 222 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA----RVFVG-ARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVL 222 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHh
Confidence 3456899999999999999999999998 99999 999987776666665433 3456778899999999986533
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
. .+..+.++++.++|++.+
T Consensus 223 ~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCc
Confidence 2 223344678889998864
No 122
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.90 E-value=9.5e-09 Score=88.28 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eecCchhhhccCCEEEEeeCcc-cH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
....++|||||+|+||+.+++.+..-|+ +|.+| +|+... .++. ...+.++++++||+|++++|.. +.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~----~V~~~-~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T 187 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM----NIYAY-TRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDET 187 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchh
Confidence 4456899999999999999998887798 99999 987432 2332 2457889999999999999854 45
Q ss_pred HHHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 85 KDVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
+.++. +....++++.++|+++-|- ..+.+.+.+.
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 55553 3555678999999886553 3456666554
No 123
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.89 E-value=1.4e-08 Score=93.79 Aligned_cols=106 Identities=17% Similarity=0.266 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+|+.+..-|. +|.+| +|... .+.....|+....+.++++++||+|++++|.. +.+
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~ 208 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM----KVLAY-DPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETR 208 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhc
Confidence 4566899999999999999999999998 99999 98532 22333467766667899999999999999854 455
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++-|- ..+.|.+.+.
T Consensus 209 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 209 GLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred cCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 555 34455678999999887553 4456666665
No 124
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.88 E-value=1.2e-08 Score=88.24 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
...++|||||+|+||+.+++.|..-|+ +|.+| +|++++...... .....+.++++++||+|++++|.. +.+.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~----~V~~~-~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF----PLRCW-SRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVG 206 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHH
Confidence 456899999999999999999999999 99999 987643211111 111246788899999999999854 5666
Q ss_pred HHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 87 VAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 87 v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
++. +....++++.++|++.-|- ..+.|.+.+.
T Consensus 207 li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred HhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 664 4556688999999886553 4456666665
No 125
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.86 E-value=2.2e-08 Score=92.67 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|+||+.+++.+..-|+ +|.+| +|.... +.....|+... +.++++++||+|++++|.. ..+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~ 209 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM----KVIAY-DPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETR 209 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhh
Confidence 3456899999999999999999999999 99999 986422 23334677665 7899999999999999864 556
Q ss_pred HHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++ .+....++++.++|+++-|- ..+.|.+.+.
T Consensus 210 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 210 GLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred cCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh
Confidence 666 34566678999999886553 4456666664
No 126
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.81 E-value=9.6e-08 Score=70.77 Aligned_cols=100 Identities=21% Similarity=0.373 Sum_probs=73.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhc--cCCEEEEeeCcccHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDivil~v~~~~~~~ 86 (272)
+||+|||+|.+|......+.+... ..++. ++ ++++++.+.+.+ .|+..++|.+++++ +.|+|++|+|+....+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~--~~~v~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~ 77 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP--DFEVVAVC-DPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE 77 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT--TEEEEEEE-CSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC--CcEEEEEE-eCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH
Confidence 589999999999999988888732 11554 67 999999888765 78888889999887 7999999999987777
Q ss_pred HHHHhchhcCCCC-EEEEEcCCCCHHHHHHH
Q 024121 87 VAMQIRPLLSRKK-LLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 87 v~~~l~~~l~~~~-~iis~~~~~~~~~l~~~ 116 (272)
++..... .|+ +++.---+.+.++.++.
T Consensus 78 ~~~~~l~---~g~~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 78 IAKKALE---AGKHVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp HHHHHHH---TTSEEEEESSSSSSHHHHHHH
T ss_pred HHHHHHH---cCCEEEEEcCCcCCHHHHHHH
Confidence 7665543 333 44442223355555443
No 127
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.77 E-value=3.8e-08 Score=85.37 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHc----C--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+.++|+|||+|.||..++..+.. .+. .+|++| +|++++.+.+.+. | +.++.+..+++.++|+|+.|++.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~---~~V~V~-~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPI---KQVRVW-GRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLS 199 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCC---CEEEEE-cCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence 56789999999999999986665 232 389999 9999998887762 4 55667888889999999888875
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
. ..++.. ..+++++. |++++
T Consensus 200 ~--~pvl~~--~~l~~g~~-i~~ig 219 (314)
T PRK06141 200 T--EPLVRG--EWLKPGTH-LDLVG 219 (314)
T ss_pred C--CCEecH--HHcCCCCE-EEeeC
Confidence 5 333322 34678874 44433
No 128
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.76 E-value=8.6e-08 Score=83.05 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=70.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee--cCchhhhccCCEEEEeeCcccH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDivil~v~~~~~ 84 (272)
...++|+|||+|.||..+++.|...|. .+|+++ +|++++.+.+.+ .|..+. ++..+.+.++|+||.|++....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV---AEITIA-NRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY 251 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch
Confidence 356899999999999999999988653 289999 999998877766 565432 3345667899999999987665
Q ss_pred HHHHHHhchhc-CCCCEEEEEcCC
Q 024121 85 KDVAMQIRPLL-SRKKLLVSVAAG 107 (272)
Q Consensus 85 ~~v~~~l~~~l-~~~~~iis~~~~ 107 (272)
.+++..+.... .++.++++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 252 AKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred HHHHHHHHhhCCCCCeEEEEeCCC
Confidence 55454433222 256788888644
No 129
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.75 E-value=2.6e-07 Score=74.83 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhc-cCCEEEEeeCcc
Q 024121 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE-YSDVVVFSVKPQ 82 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~aDivil~v~~~ 82 (272)
+..+..++|+|+|+|+||+.+++.|.+.|+ +|+++ |+++++.+.+.+ .+....++ .++.. ++|+++.|....
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~----~Vvv~-D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGA----KLIVA-DINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccc
Confidence 345567899999999999999999999999 99999 999988888776 37665543 44444 899999776544
Q ss_pred cH-HHHHHHhchhcCCCCEEEEEcCC
Q 024121 83 VV-KDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 83 ~~-~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+ .+.++++ ..++|+.-.++
T Consensus 97 ~I~~~~~~~l-----~~~~v~~~AN~ 117 (200)
T cd01075 97 VINDDTIPQL-----KAKAIAGAANN 117 (200)
T ss_pred ccCHHHHHHc-----CCCEEEECCcC
Confidence 32 3444443 24577765554
No 130
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.74 E-value=3e-08 Score=84.26 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=61.3
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....++|+|||.| .||.+|+..|.++|+ .|++| ++... ++.+++++||+||+|++ +..+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga----tVtv~-~~~t~--------------~l~e~~~~ADIVIsavg~~~~v 216 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC----SVTVV-HSRST--------------DAKALCRQADIVVAAVGRPRLI 216 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-CCCCC--------------CHHHHHhcCCEEEEecCChhcc
Confidence 4567899999996 999999999999999 99999 87642 56788899999999995 4455
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.+.+ +++|.+||++.
T Consensus 217 ~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 217 DADW------LKPGAVVIDVG 231 (301)
T ss_pred cHhh------ccCCcEEEEec
Confidence 5544 67999999873
No 131
>PLN02928 oxidoreductase family protein
Probab=98.74 E-value=7.9e-08 Score=84.35 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH------------HHcCceeecCchhhhccCCE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF------------ESIGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~aDi 74 (272)
....++|||||+|+||+.+|+.+..-|. +|.+| +|+..+.... ..... ...+..+++.+||+
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~----~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDi 229 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV----KLLAT-RRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADI 229 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCE
Confidence 3556899999999999999999999998 99999 9874221110 00111 23577899999999
Q ss_pred EEEeeCcc-cHHHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 75 VVFSVKPQ-VVKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 75 vil~v~~~-~~~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
|++++|.. ..+.++ .+....++++.++|++.-| +..+.|.+.+.
T Consensus 230 Vvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 230 VVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred EEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999843 344454 3445567899999988654 34456666665
No 132
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.73 E-value=1.4e-07 Score=80.99 Aligned_cols=91 Identities=12% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee--cCchhhhccCCEEEEeeCcccHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDivil~v~~~~~~ 85 (272)
...+|++|||+|.+|..++..|...|. +|+++ +|++++.+.....|.... .+..+.+.++|+||.|+|+..+.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga----~V~v~-~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA----NVTVG-ARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 356899999999999999999999998 99999 999887776666776643 24567788999999999865332
Q ss_pred HHHHHhchhcCCCCEEEEEcC
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~ 106 (272)
++....++++.+||++..
T Consensus 225 ---~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 225 ---KEVLSKMPPEALIIDLAS 242 (296)
T ss_pred ---HHHHHcCCCCcEEEEEcc
Confidence 233345678899998754
No 133
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.70 E-value=1.1e-07 Score=82.34 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-ccHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~~~ 85 (272)
....+++||||+|++|+.++..+..-|. +|.+| |+...+. .....+.....+.++++++||+|.+.+|- +..+
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm----~v~~~-d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~ 212 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM----KVIGY-DPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETR 212 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchh
Confidence 3447899999999999999999999999 99999 9833221 11224555567899999999999999984 4566
Q ss_pred HHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.++. +....++++.++|+++=|- ..+.|-+.+.
T Consensus 213 g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 213 GLINAEELAKMKPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred cccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence 6663 3445578999999887553 4456666665
No 134
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.69 E-value=5.3e-08 Score=86.03 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc---
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ--- 82 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~--- 82 (272)
.....++|||||+|+||+.+++.+..-|+ +|.+| |+..... .+.....+.++++++||+|++++|-.
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~----~V~~~-Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g 181 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW----KVLVC-DPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEG 181 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCc
Confidence 34567899999999999999999999999 99999 8754321 12222357889999999999999853
Q ss_pred --cHHHHH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 83 --VVKDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 83 --~~~~v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
....++ .+....++++.++|+++-|- ..+.+.+.+.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 233344 23455678999999887553 3455555553
No 135
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.69 E-value=1.1e-07 Score=76.28 Aligned_cols=153 Identities=14% Similarity=0.091 Sum_probs=108.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-----------HHHHcC--------------ceeec
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----------AFESIG--------------VKVLS 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-----------~l~~~g--------------~~~~~ 63 (272)
+.-||+|+|.|.+|+++|.-+...|| +|..| |..++.++ +|.+.| +..+.
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~Gy----qVqlY-DI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~ 76 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGY----QVQLY-DILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTT 76 (313)
T ss_pred CccceeEeecccccchHHHHHhccCc----eEEEe-eccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCc
Confidence 35689999999999999999999999 99999 99876542 222222 23456
Q ss_pred CchhhhccCCEEEEeeCcc-cH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEE
Q 024121 64 DNNAVVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~-~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~ 140 (272)
+..|+++.+=.|--|+|-+ .+ ++++.++-..+.+.+++-|.++.+....+..-+. ..++.-.||..|...-. .+-+
T Consensus 77 ~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiP-LvEl 155 (313)
T KOG2305|consen 77 SLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIP-LVEL 155 (313)
T ss_pred cHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccc-hhee
Confidence 7889999999999999865 33 4566666666666655556556666655544333 35677778866554322 2335
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCC-eEEc
Q 024121 141 SLGGTATEEDGELIGKLFGSVGK-IWRA 167 (272)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~G~-~~~~ 167 (272)
.+.+-++++.+++-+.+.+.+|. .+..
T Consensus 156 VPaPwTsp~tVdrt~~lM~sigq~pV~l 183 (313)
T KOG2305|consen 156 VPAPWTSPDTVDRTRALMRSIGQEPVTL 183 (313)
T ss_pred ccCCCCChhHHHHHHHHHHHhCCCCccc
Confidence 56677789999999999999994 4433
No 136
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.69 E-value=1.5e-07 Score=75.40 Aligned_cols=95 Identities=18% Similarity=0.354 Sum_probs=71.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
++||+||||.+|..+...+.. |-.+-.-+.+| ||+.+++..+.+ .+.....+.+|.+.+.|+++-|-.++++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~-~~~~~e~v~v~-D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRD-GRVDFELVAVY-DRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVP 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhc-CCcceeEEEEe-cCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhH
Confidence 589999999999988876554 42222356778 999999988877 455455788888899999999999999999888
Q ss_pred HhchhcCCCCEEEEEcCCCC
Q 024121 90 QIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~~~ 109 (272)
+++.. ..+-+|+|+ +.+.
T Consensus 79 ~~L~~-g~d~iV~SV-GALa 96 (255)
T COG1712 79 KILKA-GIDVIVMSV-GALA 96 (255)
T ss_pred HHHhc-CCCEEEEec-hhcc
Confidence 76543 245566665 4444
No 137
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.68 E-value=2.6e-07 Score=80.28 Aligned_cols=105 Identities=14% Similarity=0.192 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
....+++||||+|++|..+++.+. .-|. +|..| +|.... +.....++.. .+.++++++||+|++++|-. ..
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm----~V~~~-~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T 214 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM----PILYN-ARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDET 214 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC----EEEEE-CCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHH
Confidence 456689999999999999999987 5676 88888 876422 2222345554 47899999999999999843 45
Q ss_pred HHHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++. +....++++.++|++.-| +..+.|.+.+.
T Consensus 215 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 215 HHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred hhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 55552 345567899999988644 34456666665
No 138
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.66 E-value=1.1e-07 Score=70.81 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=62.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcC--ce-e---ecCchhh-hccCCEEEEeeCcc
Q 024121 12 ILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIG--VK-V---LSDNNAV-VEYSDVVVFSVKPQ 82 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g--~~-~---~~~~~~~-~~~aDivil~v~~~ 82 (272)
||+|||+ |.+|..++..+.+. ++ ++...+.++.++.+.+...+ +. . ..+..+. ..++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~----~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF----EVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc----eEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH
Confidence 6899995 99999999999885 55 66543255544333333321 21 1 1111121 24899999999999
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
...+++..+.+.+.+|+++||+++..
T Consensus 77 ~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 88887766666668999999987654
No 139
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.66 E-value=2.7e-07 Score=79.94 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=75.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~ 86 (272)
...+++||||+|++|+++|+.+..=|. +|..| +|.+. .+..+..+..... .++++++||+|.+.+|.. +...
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm----~v~y~-~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM----KVLYY-DRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhh
Confidence 456899999999999999999986566 88888 98864 2222234455554 899999999999999854 4555
Q ss_pred HH-HHhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 87 VA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 87 v~-~~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
++ .+....++++.++|++.=|- ..+.+-+.+.
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 55 34455678999999886543 4455655554
No 140
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.65 E-value=2.1e-07 Score=81.06 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=67.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+..++||||+|.+|...+..+.... +..+|++| +|++++++.+.+ .| +.++.+..++++++|+|++|+|..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~--~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVF--DLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC
Confidence 5678999999999999888876632 34589999 999999877655 35 456788999999999999999764
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
. .++. ...++||..|..+.
T Consensus 204 ~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 204 K--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred C--cEec--HHHcCCCCEEEecC
Confidence 3 2221 12357888776553
No 141
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.63 E-value=2.6e-07 Score=82.87 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=77.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cH
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~ 84 (272)
.....+++||||+|++|+.+|+.+..-|. +|.+| +|.+.. ...++....+.++++++||+|.+++|.. ..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm----~V~~~-d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T 217 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM----RVYFY-DIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPST 217 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHH
Confidence 34567899999999999999999999998 99999 986421 1123444568899999999999999854 45
Q ss_pred HHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+.++ .+....++++.++|+++-| +..+.|.+.+.
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 5555 3345567899999988644 34456666554
No 142
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.61 E-value=1.5e-07 Score=83.01 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc--
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-- 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-- 83 (272)
+....++|||||+|+||+.+++.+..-|. +|.+| |+..... .... ...+.++++++||+|++.+|-..
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~----~V~~~-dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~g 181 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGI----KTLLC-DPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKDG 181 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCCc
Confidence 45577899999999999999999999999 99999 8753211 1111 23578899999999999987322
Q ss_pred ---HHHHH-HHhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 84 ---VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 84 ---~~~v~-~~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
...++ .+....++++.++|+++-| +..+.|.+.+.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 33333 3444567899999988655 34455655553
No 143
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.57 E-value=4.3e-07 Score=78.09 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=78.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHHHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~~v 87 (272)
..+||||+|+|++|+.+|++|..-|. .+..+ +|++...+...+.+.. ..|..+.+.++|+|++|+|.. +...+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~----~i~y~-~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~l 234 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGC----VILYH-SRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHL 234 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccc----eeeee-cccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHH
Confidence 45899999999999999999998664 66666 8877666665555554 357789999999999999864 56666
Q ss_pred HH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 88 AM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
+. +....++++.++|++.=| +..+.+.+.+.
T Consensus 235 iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 235 INKKFIEKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred hhHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence 64 566778899999987644 34456666665
No 144
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.56 E-value=4.2e-07 Score=78.69 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....+++||||+|++|+.+|+.+..-|. +|..| +|..... ..++. ..+.++++++||+|++++|-. ..+
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm----~V~~~-d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA----KVVYY-STSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC----EEEEE-CCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhh
Confidence 4567899999999999999999988887 99999 9864221 12343 347899999999999999843 444
Q ss_pred HHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++. +....++++.++|+++-| +..+.|.+.+.
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 4552 344557899999988755 34556666665
No 145
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.54 E-value=4.6e-07 Score=75.36 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeecCchhh-hccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDivil~v~~~~~~~v 87 (272)
.+||||||||.||+.++..|.+.+. ...++ .++ +|++++.+.+... +.++.+.+++ ..+.|+|+-|-.++.+++.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~-~~~~l~~V~-~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~e~ 78 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAA-QPCQLAALT-RNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIAEH 78 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCC-CceEEEEEe-cCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHHHH
Confidence 5799999999999999999876432 11244 456 8988888777654 6677888885 6789999999999999988
Q ss_pred HHHhch
Q 024121 88 AMQIRP 93 (272)
Q Consensus 88 ~~~l~~ 93 (272)
...++.
T Consensus 79 ~~~iL~ 84 (267)
T PRK13301 79 AEGCLT 84 (267)
T ss_pred HHHHHh
Confidence 887654
No 146
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.53 E-value=2.8e-07 Score=78.47 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeC-CCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-cc
Q 024121 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QV 83 (272)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~ 83 (272)
....++|+||| .|.||.+|+..|.+.|+ .|++| + |++ ++.+++++||+||+|++. ..
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~----tVtv~-~~rT~---------------~l~e~~~~ADIVIsavg~~~~ 214 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA----TVTIA-HSRTR---------------DLPAVCRRADILVAAVGRPEM 214 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC----EEEEE-CCCCC---------------CHHHHHhcCCEEEEecCChhh
Confidence 45678999999 99999999999999999 99999 6 553 346778899999999964 44
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
+.+.+ +++|++||++
T Consensus 215 v~~~~------lk~GavVIDv 229 (296)
T PRK14188 215 VKGDW------IKPGATVIDV 229 (296)
T ss_pred cchhe------ecCCCEEEEc
Confidence 44443 6799999986
No 147
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.53 E-value=2.5e-07 Score=70.16 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---Ccee--ecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GVKV--LSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---g~~~--~~~~~~~~~~aDivil~v~~ 81 (272)
.+.+++.|||+|-+|++++..|.+.|. .+|+++ +|+.++++.+.+ . ++.. .++..+.+.++|+||.|+|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~-nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA---KEITIV-NRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS---SEEEEE-ESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC---CEEEEE-ECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 467899999999999999999999997 259999 999999998877 3 2332 34445567899999999975
Q ss_pred c
Q 024121 82 Q 82 (272)
Q Consensus 82 ~ 82 (272)
.
T Consensus 86 ~ 86 (135)
T PF01488_consen 86 G 86 (135)
T ss_dssp T
T ss_pred C
Confidence 5
No 148
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.52 E-value=3.4e-07 Score=68.36 Aligned_cols=97 Identities=25% Similarity=0.369 Sum_probs=66.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHH-H----HHHHH---HcCceeecCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLK-R----RDAFE---SIGVKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~-~----~~~l~---~~g~~~~~~~~~~~~~aDivil~v~ 80 (272)
|||+|+|+ |+||+.+++.+.+ .++ ++....+|+++ . .-.+. ..|+.+.++.+++++.+|+||-.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~ 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC
Confidence 68999999 9999999999998 566 65533377762 1 11222 2467778889999999999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~ 114 (272)
|+.+.+.++.... .+..+|..++|.+.++++
T Consensus 77 p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 77 PDAVYDNLEYALK---HGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHH
T ss_pred hHHhHHHHHHHHh---CCCCEEEECCCCCHHHHH
Confidence 8877777766543 356677777888765544
No 149
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.48 E-value=6.8e-07 Score=77.46 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....+++||||+|++|+.+++.+..-|. +|..| +|.... . .... ..+.++++++||+|++++|-. ..+
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~----~V~~~-~~~~~~--~---~~~~-~~~l~ell~~sDiv~l~~Plt~~T~ 212 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM----KVLYA-EHKGAS--V---CREG-YTPFEEVLKQADIVTLHCPLTETTQ 212 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCccc--c---cccc-cCCHHHHHHhCCEEEEcCCCChHHh
Confidence 3456899999999999999999988888 89988 876421 1 0111 247889999999999999843 455
Q ss_pred HHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++. +....++++.++|++.-| +..+.|.+.+.
T Consensus 213 ~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 213 NLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 5552 344557899999988654 34566666665
No 150
>PLN02306 hydroxypyruvate reductase
Probab=98.48 E-value=1.8e-06 Score=76.70 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=74.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHH-HHHH-HHcC------------ceeecCchhhhcc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKR-RDAF-ESIG------------VKVLSDNNAVVEY 71 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~~ 71 (272)
....++|||||+|++|+.+|+.+. .-|. +|.+| +|.... .... ...+ .....+.++++++
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm----~V~~~-d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~ 236 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE 236 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh
Confidence 456689999999999999999985 5577 89999 987532 1111 1111 1223478999999
Q ss_pred CCEEEEeeCcc-cHHHHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 72 SDVVVFSVKPQ-VVKDVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 72 aDivil~v~~~-~~~~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
||+|++++|-. ..+.++. +....++++.++|++.-| +..+.+.+.+.
T Consensus 237 sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 237 ADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred CCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999843 4555553 345567899999988654 34456656554
No 151
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.47 E-value=7.6e-07 Score=75.02 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
+|||+|||+ |.||+.++..+.+. ++ ++. ++ ++++++.......++....+..++++++|+|+.+++|+...+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~----elvav~-d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~ 75 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL----ELVAAV-DRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLE 75 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHH
Confidence 379999998 99999999888764 44 655 46 888766544433566666788887888999999999888777
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
++.... ..++-++.-+.|.+.++..+
T Consensus 76 ~~~~al---~~G~~vvigttG~s~~~~~~ 101 (257)
T PRK00048 76 NLEFAL---EHGKPLVIGTTGFTEEQLAE 101 (257)
T ss_pred HHHHHH---HcCCCEEEECCCCCHHHHHH
Confidence 665544 34444554456777665543
No 152
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.46 E-value=1.2e-06 Score=76.00 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=73.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcc-cHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~-~~~ 85 (272)
....++|||||+|++|+.+|+.+..-|. +|..| +|.... .... ..+.++++++||+|++++|-. ..+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm----~V~~~-~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM----RVLIG-QLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTR 212 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHh
Confidence 4566899999999999999999988888 99999 886321 1111 236889999999999999853 455
Q ss_pred HHHH-HhchhcCCCCEEEEEcCC--CCHHHHHHHhC
Q 024121 86 DVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (272)
Q Consensus 86 ~v~~-~l~~~l~~~~~iis~~~~--~~~~~l~~~~~ 118 (272)
.++. +....++++.++|++.-| +..+.|.+.+.
T Consensus 213 ~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 213 HLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred cCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 5552 344567899999988644 34456666665
No 153
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.43 E-value=3.1e-06 Score=65.29 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V- 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~- 84 (272)
+...+++.++|.|..|+.+|+.|...|. +|+++ +++|-++-+..-.|.++. +.++++..+|++|.++-... +
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga----~V~V~-e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~ 93 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA----RVTVT-EIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVIT 93 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-----EEEEE--SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC----EEEEE-ECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccC
Confidence 3456789999999999999999999998 99999 999977666555888875 67889999999999985544 2
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.+-+.+ ++++.++.+.
T Consensus 94 ~e~~~~----mkdgail~n~ 109 (162)
T PF00670_consen 94 GEHFRQ----MKDGAILANA 109 (162)
T ss_dssp HHHHHH----S-TTEEEEES
T ss_pred HHHHHH----hcCCeEEecc
Confidence 355544 5577666654
No 154
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.43 E-value=2.3e-06 Score=73.93 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=66.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH----cCcee-ecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES----IGVKV-LSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~----~g~~~-~~~~~~~~~~aDivil~v~~~ 82 (272)
+.++++|||+|.+|...+..+.. .+. .+|.+| +|++++++.+.+ .++.+ ..+.++++.++|+|+.|+|..
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~---~~v~v~-~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPV---RRVWVR-GRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC
Confidence 56789999999999999999975 333 489999 999999887766 23333 356778899999999999866
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. .++.. .++||+.|..+
T Consensus 200 ~--Pl~~~---~~~~g~hi~~i 216 (304)
T PRK07340 200 T--PVYPE---AARAGRLVVAV 216 (304)
T ss_pred C--ceeCc---cCCCCCEEEec
Confidence 4 23332 35788777655
No 155
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.40 E-value=2.5e-06 Score=73.83 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC--ceeecCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG--VKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g--~~~~~~~~~~~~~aDivil~v~ 80 (272)
+||+|||+|.+|++++..|...|. ..+|.++ ||++++++.+.. .+ ..+.....+.+.+||+||+++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~--~~ei~l~-D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGI--ADELVLI-DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG 77 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccC
Confidence 489999999999999999999884 1289999 999887665443 11 2233333455889999999983
Q ss_pred cc----c------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 PQ----V------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~~----~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
.. . ++++.+.+..+ .|+.+++..+++..
T Consensus 78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d 121 (306)
T cd05291 78 APQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVD 121 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHH
Confidence 21 1 33444555554 46667776666544
No 156
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.39 E-value=3.3e-06 Score=72.90 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=64.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH------cC--ceeecCchhhhccCCEEEEe
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IG--VKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l----~~------~g--~~~~~~~~~~~~~aDivil~ 78 (272)
|||+|||+|.||..+|..+...|+. +|.++ |++++..+.. .. .. +..+.+.++ +++||+||++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~---~Vvlv-Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA---DLVLL-DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVIT 76 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC---eEEEE-eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence 6899999999999999999998862 69999 8866543311 11 11 223455555 7899999999
Q ss_pred eC--c--------------ccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 79 VK--P--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 79 v~--~--------------~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+. . +.++++.+++.++. ++.++|..+++...
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di 123 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDA 123 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 85 1 12344556666664 66677777776554
No 157
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.37 E-value=3.4e-06 Score=73.00 Aligned_cols=89 Identities=10% Similarity=0.135 Sum_probs=68.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc--eeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--KVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+..+++|||+|..+...+..+... . +..+|.+| +|++++++.+.+ .++ .++++.++++.+||+|+.|++..
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-T-DCRQLWVW-GRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC
Confidence 567899999999999999988774 2 55699999 999999887765 243 44678889999999999999755
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. .+++. ..++||+.|..+
T Consensus 204 ~--P~~~~--~~l~~G~hi~~i 221 (315)
T PRK06823 204 E--PLLQA--EDIQPGTHITAV 221 (315)
T ss_pred C--ceeCH--HHcCCCcEEEec
Confidence 3 33321 235788877755
No 158
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.37 E-value=3.2e-06 Score=73.21 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c--Ccee--ecCchhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKV--LSDNNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~--g~~~--~~~~~~~~~~aDivil 77 (272)
+|||+|||+|.||..++..+...|+ . +|.++ |+++++++... . . ...+ ..+. +.+++||+||+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~--~-ev~L~-D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii 76 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKEL--G-DVVLF-DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVI 76 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--e-EEEEE-ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEE
Confidence 4799999999999999999998875 1 79999 99876653321 1 1 1233 2344 55899999999
Q ss_pred ee--Cc--------------ccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 78 SV--KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 78 ~v--~~--------------~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
++ |. ..+.+++.++.++. ++.++|..+++...
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~ 124 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDA 124 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 96 22 12455666676665 56666666665543
No 159
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.37 E-value=5.1e-06 Score=63.45 Aligned_cols=95 Identities=22% Similarity=0.380 Sum_probs=64.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--CceeecCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--GVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~--g~~~~~~~~~~~~~aDivil~v 79 (272)
|||+|||+ |++|++++..|...+. .+++.++ |+++++++.... . ...+..+..+.+++||+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLI-DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEE-ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCceEEe-ccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 79999999 9999999999999876 3479999 999776543322 1 2344445667789999999986
Q ss_pred --C--c-ccH-----------HHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 --K--P-QVV-----------KDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 --~--~-~~~-----------~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
| + ..- +++..++..+ .|+.+++-.++++.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvtNPvd 122 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVTNPVD 122 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-SSSHH
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeCCcHH
Confidence 2 1 111 2233445555 47777776666543
No 160
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.36 E-value=1.6e-06 Score=74.62 Aligned_cols=86 Identities=13% Similarity=0.218 Sum_probs=57.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCH-HHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
+.+||+|||+|+||...+..+.+. ++ ++. +| +|++ ++.. ...++....+..+...+.|+|++|+|+....
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~----ELVgV~-dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~ 74 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDM----ELVGVF-SRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDI 74 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCc----EEEEEE-cCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCH
Confidence 458999999999999999998865 44 665 56 8885 4332 1234433445566678899999999865433
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+.. .+.+..+.-+|+.
T Consensus 75 ~~~---~~~L~aG~NVV~s 90 (324)
T TIGR01921 75 PEQ---APYFAQFANTVDS 90 (324)
T ss_pred HHH---HHHHHcCCCEEEC
Confidence 222 2234455666654
No 161
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.36 E-value=2.8e-06 Score=75.21 Aligned_cols=94 Identities=26% Similarity=0.423 Sum_probs=68.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ecCchhhhccCCEEEEee--Cccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSV--KPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDivil~v--~~~~ 83 (272)
..+++.|||+|.||.-.+++|..+|. .+|++. ||+.+++..+++ .|..+ .++..+.+.++|+||.|+ |...
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~---~~i~Ia-NRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV---KKITIA-NRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 45789999999999999999999996 389999 999999999887 66443 345567788999999998 3333
Q ss_pred HH-HHHHHhchhcCCCCEEEEEcCC
Q 024121 84 VK-DVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 84 ~~-~v~~~l~~~l~~~~~iis~~~~ 107 (272)
+. +-++..... ++..++||+..+
T Consensus 253 i~~~~ve~a~~~-r~~~livDiavP 276 (414)
T COG0373 253 ITREMVERALKI-RKRLLIVDIAVP 276 (414)
T ss_pred cCHHHHHHHHhc-ccCeEEEEecCC
Confidence 32 333332211 223467787443
No 162
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.36 E-value=3.4e-06 Score=72.64 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+..+++|||+|..|...+..+..- + +..+|.+| +|++++++.+.+ .| +.++.+.++++.+||+|+.|++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV-Y-NPKRIRVY-SRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 567899999999999999888874 2 55699999 999999887765 24 45678899999999999999986
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.. .+++. ..++|+..|..+
T Consensus 193 ~~--P~~~~--~~l~pg~hV~ai 211 (301)
T PRK06407 193 DT--PIFNR--KYLGDEYHVNLA 211 (301)
T ss_pred CC--cEecH--HHcCCCceEEec
Confidence 53 23321 235787665544
No 163
>PLN00203 glutamyl-tRNA reductase
Probab=98.35 E-value=3.1e-06 Score=77.83 Aligned_cols=96 Identities=24% Similarity=0.334 Sum_probs=69.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-Cce----eecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVK----VLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~----~~~~~~~~~~~aDivil~v~~ 81 (272)
...++|+|||+|.||..++++|...|. .+|+++ +|+.++++.+.+ . +.. ...+..+++.++|+||.|++.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~---~~V~V~-nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC---TKMVVV-NRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC---CeEEEE-eCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC
Confidence 457899999999999999999999885 269999 999999988876 3 332 123556778899999999853
Q ss_pred c---cHHHHHHHhchhc---CCCCEEEEEcCC
Q 024121 82 Q---VVKDVAMQIRPLL---SRKKLLVSVAAG 107 (272)
Q Consensus 82 ~---~~~~v~~~l~~~l---~~~~~iis~~~~ 107 (272)
. ...+.++.+.+.- ....++||++-+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 2 3456666653211 122478887443
No 164
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.35 E-value=3.8e-06 Score=73.29 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=66.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc--eeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDivil~v~~ 81 (272)
+..+++|||+|.+|...+..+.... ...+|.+| +|++++.+++.+ .++ ....+.++++.++|+|+.|+|.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVR--DIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcC--CccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCC
Confidence 5678999999999999888776431 22489999 999999887765 244 3456778889999999999986
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.. .++. ..+++|+.|+.+
T Consensus 203 ~~--p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 203 KT--PVFS---EKLKKGVHINAV 220 (325)
T ss_pred CC--cchH---HhcCCCcEEEec
Confidence 63 3333 346789887765
No 165
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.34 E-value=2.2e-06 Score=72.55 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=57.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+|||||||+|+||+.+++.+.+.... ++...+.+ ..++.......++.++.+.+++..+.|+|+.|+++....+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~---~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDL---RVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEH 77 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCc---eEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHH
Confidence 47999999999999999998875321 44332144 33332222223666777777764569999999998877666
Q ss_pred HHHhchhcCCCCEEEEE
Q 024121 88 AMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~ 104 (272)
..+.. ..|+-++..
T Consensus 78 ~~~aL---~aGk~Vvi~ 91 (265)
T PRK13303 78 VVPIL---KAGIDCAVI 91 (265)
T ss_pred HHHHH---HcCCCEEEe
Confidence 65544 344445543
No 166
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.34 E-value=1.1e-06 Score=65.42 Aligned_cols=90 Identities=11% Similarity=0.165 Sum_probs=60.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-----c---CceeecCchhhhccCCEEEEeeCc
Q 024121 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-----I---GVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 12 ~IgiIG-~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-----~---g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
||+||| +|.+|+.+.+.|.++-. .+ +.++ .++.+.-+.+.. . ...+.....+.+.++|+||+|+|.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~---~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD---FELVALV-SSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST---EEEEEEE-ESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC---ccEEEee-eeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch
Confidence 799999 89999999999988432 24 4455 555522122222 1 223333334556899999999999
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
....+..+.+. .++..|||.++..
T Consensus 77 ~~~~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 GASKELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred hHHHHHHHHHh---hCCcEEEeCCHHH
Confidence 98888887763 5777999987654
No 167
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.33 E-value=2e-06 Score=77.74 Aligned_cols=96 Identities=27% Similarity=0.353 Sum_probs=66.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ecCchhhhccCCEEEEeeCccc-
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV- 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDivil~v~~~~- 83 (272)
...++|+|||+|.||..++..|...|. .+|+++ +|+++++..+.+ .|..+ ..+..+.+.++|+||.|++...
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV---RKITVA-NRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP 255 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC---CeEEEE-eCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence 456899999999999999999998885 379999 999998877766 45332 2345566789999999996432
Q ss_pred -H-HHHHHHhch-hcCCCCEEEEEcCC
Q 024121 84 -V-KDVAMQIRP-LLSRKKLLVSVAAG 107 (272)
Q Consensus 84 -~-~~v~~~l~~-~l~~~~~iis~~~~ 107 (272)
+ .+.+..... .-..+.+++|+..+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 2 333433211 11234578887543
No 168
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.33 E-value=6.9e-06 Score=67.76 Aligned_cols=91 Identities=16% Similarity=0.303 Sum_probs=67.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCcee---ecCch----hh-hccCCEEEEeeC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKV---LSDNN----AV-VEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~---~~~~~----~~-~~~aDivil~v~ 80 (272)
|+|.|||+|.+|..+|+.|.+.|| +|.+. +++++++++..+ .+..+ ..+.. ++ +.++|+++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~----~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH----NVVLI-DRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC----ceEEE-EcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 789999999999999999999999 99999 999999888444 44332 12222 22 568999999999
Q ss_pred cccHHHHHHHhchh-cCCCCEEEEEcC
Q 024121 81 PQVVKDVAMQIRPL-LSRKKLLVSVAA 106 (272)
Q Consensus 81 ~~~~~~v~~~l~~~-l~~~~~iis~~~ 106 (272)
.+....++-.+... +....+|.-..+
T Consensus 76 ~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 76 NDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 88888887665533 444445554433
No 169
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.31 E-value=5.6e-06 Score=72.24 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH-----cCce--eecCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDivil~v~ 80 (272)
+..+++|||+|.+|...+..|.. .+. .+|++| +|++++++.+.+ .|+. ..++.++++.++|+|+.|+|
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i---~~v~V~-~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI---RSARIW-ARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc---cEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecC
Confidence 45789999999999999999974 343 489999 999999888765 2543 35677888999999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
... .++.. ..+++++.+..+
T Consensus 204 s~~--p~i~~--~~l~~g~~i~~v 223 (326)
T TIGR02992 204 SET--PILHA--EWLEPGQHVTAM 223 (326)
T ss_pred CCC--cEecH--HHcCCCcEEEee
Confidence 653 22221 235688776654
No 170
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.31 E-value=4.2e-06 Score=75.40 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=70.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
....++++|||+|.+|..++..+...|. +|.++ ++++.+.......|+... +.+++++.+|+|++++....
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga----~ViV~-e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atGt~~--- 321 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA----RVVVT-EIDPICALQAAMEGYQVV-TLEDVVETADIFVTATGNKD--- 321 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCCccc---
Confidence 4567899999999999999999999998 99999 999877654444677653 57788999999999974322
Q ss_pred HHH-HhchhcCCCCEEEEEcCC
Q 024121 87 VAM-QIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 87 v~~-~l~~~l~~~~~iis~~~~ 107 (272)
++. +....++++.+++++.-+
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCC
Confidence 221 233446788899987444
No 171
>PRK06046 alanine dehydrogenase; Validated
Probab=98.30 E-value=4.6e-06 Score=72.78 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=65.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+..+++|||+|.+|...+..+.... +...|.+| +|++++.+++.+ .+ +....+.+++++ +|+|++|+|.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVF--DLEEVRVY-DRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPS 203 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC--CceEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCC
Confidence 4578999999999999999987542 33588999 999998887765 24 345667788786 9999999987
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEc
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.. .++.. ..+++++.|.++.
T Consensus 204 ~~--P~~~~--~~l~~g~hV~~iG 223 (326)
T PRK06046 204 RK--PVVKA--EWIKEGTHINAIG 223 (326)
T ss_pred CC--cEecH--HHcCCCCEEEecC
Confidence 53 23321 2357888776653
No 172
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.30 E-value=4.3e-06 Score=73.15 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+..+++|||+|..+....+.+..-- +..+|++| +|++++++.+.+ .+ +.++.+.++++++||+|+.|++..
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr--~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL--GIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK 204 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC--CceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence 5678999999999999888777642 45699999 999999887765 24 455788999999999999999754
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.-..+++. ..++||+.|..+
T Consensus 205 ~~~Pvl~~--~~lkpG~hV~aI 224 (346)
T PRK07589 205 TNATILTD--DMVEPGMHINAV 224 (346)
T ss_pred CCCceecH--HHcCCCcEEEec
Confidence 32233322 235788766544
No 173
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.30 E-value=1.7e-06 Score=74.95 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=58.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c-C--ceeecCchhhhccCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I-G--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~-g--~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+..+++|||+|..|..-+..+...- +..+|.+| +|++++++++.+ . + +..+.+.++++++||+|+.|++..
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVR--PIKEVRVY-SRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS----SEEEEE--SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC--CceEEEEE-ccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCC
Confidence 4578999999999999999887642 34699999 999999888776 2 3 446788899999999999999765
Q ss_pred cHHHHHHHhchhcCCCCEEEEEc
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.-..++.. ..+++++.|..+.
T Consensus 204 ~~~P~~~~--~~l~~g~hi~~iG 224 (313)
T PF02423_consen 204 TPAPVFDA--EWLKPGTHINAIG 224 (313)
T ss_dssp SEEESB-G--GGS-TT-EEEE-S
T ss_pred CCCccccH--HHcCCCcEEEEec
Confidence 52122321 2467887776653
No 174
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.29 E-value=8.5e-06 Score=73.59 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=50.4
Q ss_pred CeEEEEcccHHHHHHHH--HHH----hCCCCCCCcEEEEeCCCHHHHHHHHH--------c----CceeecCchhhhccC
Q 024121 11 FILGFIGAGKMAESIAK--GVA----KSGVLPPDRICTAVHSNLKRRDAFES--------I----GVKVLSDNNAVVEYS 72 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~--~l~----~~g~~~~~~V~v~~~r~~~~~~~l~~--------~----g~~~~~~~~~~~~~a 72 (272)
+||+|||+|.||.+++. .++ .+|+ +|.+| |+++++++.... . .+..+.|..+++++|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~----eV~L~-Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~A 75 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGS----TIALM-DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGA 75 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCC----EEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCC
Confidence 58999999999998665 444 2344 99999 999987665432 1 234466777889999
Q ss_pred CEEEEeeCcc
Q 024121 73 DVVVFSVKPQ 82 (272)
Q Consensus 73 Divil~v~~~ 82 (272)
|+||.+++..
T Consensus 76 D~Vi~ai~~~ 85 (423)
T cd05297 76 DFVINTIQVG 85 (423)
T ss_pred CEEEEeeEec
Confidence 9999999853
No 175
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=2.2e-06 Score=72.44 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....++|+|||. |.||.+|+..|.++|+ .|++| .... .++.+.+++||+||.|++ +..+
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVI~avg~~~~v 215 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNA----TVTLT-HSRT--------------RNLAEVARKADILVVAIGRGHFV 215 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEecCccccC
Confidence 456789999999 9999999999999999 99999 5322 256778899999999995 4555
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.+.+ +++|.++|++
T Consensus 216 ~~~~------ik~GavVIDv 229 (284)
T PRK14179 216 TKEF------VKEGAVVIDV 229 (284)
T ss_pred CHHH------ccCCcEEEEe
Confidence 5543 6799999987
No 176
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.28 E-value=6.4e-06 Score=74.28 Aligned_cols=95 Identities=23% Similarity=0.332 Sum_probs=65.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ecCchhhhccCCEEEEeeCccc-
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV- 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDivil~v~~~~- 83 (272)
....+|+|||+|.||..+++.|...|. .+|+++ +|+++++..+.+ .|... ..+..+.+.++|+||.|++...
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~---~~V~v~-~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGV---GKILIA-NRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCc
Confidence 345799999999999999999999883 189999 999988877765 44332 2345567889999999985332
Q ss_pred -H-HHHHHHhchhcCCCCEEEEEcC
Q 024121 84 -V-KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 -~-~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+ .+.+......-+...+++|...
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 2 2334332211012337778753
No 177
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.28 E-value=6.9e-06 Score=70.06 Aligned_cols=93 Identities=11% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHH--HHHHHcCcee-ecCchhhhc-----cCCEEEE
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRR--DAFESIGVKV-LSDNNAVVE-----YSDVVVF 77 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~-----~aDivil 77 (272)
+|+.+||||||+|++|..+...+.+... .++. ++ ++++++. +...+.|+.. ..+.+++++ +.|+||.
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~~---velvAVv-did~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSEH---LEPGAMV-GIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCCC---cEEEEEE-eCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEE
Confidence 4567899999999999998888876432 2655 55 8887642 3344478765 356677764 5899999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+++.....+....+. ..|+.+|+.++
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999887777665554 45777886543
No 178
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.28 E-value=6.2e-06 Score=71.34 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=69.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c-C--ceeecCchhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-G--VKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~-g--~~~~~~~~~~~~~aDivil~v~~ 81 (272)
+...++|||+|..+......+.+- .+..+|.+| +|++++.+++.. . + +..+.+.++++++||+|+.|+|.
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v--~~~~~I~i~-~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s 205 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV--RDIREIRVY-SRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPS 205 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh--CCccEEEEE-cCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCC
Confidence 456899999999999999988774 245699999 999999888774 2 3 45678889999999999999987
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.. .++.. ..++|++.|..+
T Consensus 206 ~~--Pil~~--~~l~~G~hI~ai 224 (330)
T COG2423 206 TE--PVLKA--EWLKPGTHINAI 224 (330)
T ss_pred CC--CeecH--hhcCCCcEEEec
Confidence 76 34422 346788766654
No 179
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.28 E-value=6.1e-06 Score=71.42 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=49.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHc-----CceeecCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDivil~v~ 80 (272)
|||+|||+|.+|++++..|...|. ..+|.++ |+++++++. +... ...+..+..+.+++||+||+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~--~~ev~l~-D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL--ASEIVLV-DINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CCEEEEE-ECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccC
Confidence 689999999999999999999883 1289999 999876653 2211 11222233456899999999985
No 180
>PLN02494 adenosylhomocysteinase
Probab=98.27 E-value=5.5e-06 Score=74.50 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H-H
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V-K 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~-~ 85 (272)
...++++|+|+|.+|..+++.+...|. +|.++ ++++.+.......|..+. +.+++++.+|+||.++.... + .
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga----~VIV~-e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~ 325 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA----RVIVT-EIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMV 325 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHH
Confidence 456899999999999999999998898 99999 999877655555677654 56788899999999875443 2 3
Q ss_pred HHHHHhchhcCCCCEEEEEcC---CCCHHHHHHH
Q 024121 86 DVAMQIRPLLSRKKLLVSVAA---GVKLKDLQEW 116 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~---~~~~~~l~~~ 116 (272)
+.+ ..++++.+++++.- -+....|.+.
T Consensus 326 e~L----~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 326 DHM----RKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred HHH----hcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 333 34678889987643 2334555544
No 181
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.27 E-value=9.3e-06 Score=72.29 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
...++++|+|+|.+|..++..+...|. +|.++ ++++.+.......|..+. +.+++++++|+||.++.... +
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga----~ViV~-d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~---v 263 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKD---V 263 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC----EEEEE-eCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHH---H
Confidence 456799999999999999999999998 99999 999987665556777654 45778899999999885433 2
Q ss_pred HH-HhchhcCCCCEEEEEcCC---CCHHHHHH
Q 024121 88 AM-QIRPLLSRKKLLVSVAAG---VKLKDLQE 115 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~~~~---~~~~~l~~ 115 (272)
+. +....++++.++++...+ ++.+.+.+
T Consensus 264 I~~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 264 IRGEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred HHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 32 234456788888876432 34455544
No 182
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.25 E-value=8.6e-06 Score=72.92 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=68.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
...++++|+|+|.+|..++..+...|. +|+++ ++++.+.......|..+. +..++++.+|+||.|+.... +
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga----~ViV~-d~dp~ra~~A~~~G~~v~-~l~eal~~aDVVI~aTG~~~---v 280 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA----RVIVT-EVDPICALQAAMDGFRVM-TMEEAAELGDIFVTATGNKD---V 280 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCchhhHHHHhcCCEec-CHHHHHhCCCEEEECCCCHH---H
Confidence 356799999999999999999999998 99999 999987766555677653 56788899999999985432 2
Q ss_pred HH-HhchhcCCCCEEEEE
Q 024121 88 AM-QIRPLLSRKKLLVSV 104 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~ 104 (272)
+. .....++++.++++.
T Consensus 281 I~~~~~~~mK~GailiNv 298 (425)
T PRK05476 281 ITAEHMEAMKDGAILANI 298 (425)
T ss_pred HHHHHHhcCCCCCEEEEc
Confidence 32 333446788888865
No 183
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.25 E-value=5.2e-06 Score=70.53 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=64.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----CceeecCchh-hhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNA-VVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~aDivil~v~~~~ 83 (272)
..+++.|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+. +.....+..+ ...++|+||.|+|...
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~----~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm 190 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC----NVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGM 190 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCC
Confidence 45789999999999999999999998 99999 9999888777652 3212222222 2357999999998642
Q ss_pred ---HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 ---VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ---~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
..++.- ....++++.++++++-
T Consensus 191 ~~~~~~~~~-~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 191 SGNIDEPPV-PAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCC-CHHHcCCCCEEEEecc
Confidence 211100 0123578889998753
No 184
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.23 E-value=6.3e-06 Score=71.66 Aligned_cols=95 Identities=16% Similarity=0.325 Sum_probs=64.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH--H--HH----cC--cee--ecCchhhhccCCEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--F--ES----IG--VKV--LSDNNAVVEYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~--l--~~----~g--~~~--~~~~~~~~~~aDivi 76 (272)
+.+||+|||+|.||+.++..+...|. .++.++ |+++++++. + .. .+ ..+ ..+.+ .+++||+||
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~---~~l~L~-Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL---GDVVLY-DVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC---CeEEEE-ECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEE
Confidence 45799999999999999999988883 279999 998765431 1 11 12 222 23444 689999999
Q ss_pred Eee--Cc--------------ccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 77 FSV--KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 77 l~v--~~--------------~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
++. |. ..+.++.+.+.++ .|+.+++..+++..
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~d 126 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLD 126 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 998 32 2245666667666 46666666666554
No 185
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.21 E-value=1.2e-05 Score=68.16 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=65.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCC-HHH----HHHHHH---cCceeecCchhhhccCCEEEEee
Q 024121 11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRIC-TAVHSN-LKR----RDAFES---IGVKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG-~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~-~~~----~~~l~~---~g~~~~~~~~~~~~~aDivil~v 79 (272)
+||+|+| +|+||..+++.+.+. ++ ++. ++ +|. ++. ...+.. .|+.++.+.+++..++|+|+.++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~----elvav~-d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGL----QLVAAF-ERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFT 76 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECC
Confidence 6999999 699999999999864 44 655 45 753 322 112211 35666777777655799999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~ 116 (272)
+|....+.+.... ..++-+|..+.|.+.+..+++
T Consensus 77 ~p~~~~~~~~~al---~~g~~vVigttg~~~e~~~~l 110 (266)
T TIGR00036 77 TPEGVLNHLKFAL---EHGVRLVVGTTGFSEEDKQEL 110 (266)
T ss_pred ChHHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHH
Confidence 9988777776544 344445544457877655443
No 186
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.20 E-value=7.5e-06 Score=72.15 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcC---ceee-------cCchhhhccCCEEEEe
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIG---VKVL-------SDNNAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g---~~~~-------~~~~~~~~~aDivil~ 78 (272)
+|+|-+||+|.+|+.++..|.++| + +|++- +|++++++++.... ++.. ....+++++.|+||-|
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~----~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDG----EVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 578999999999999999999998 5 99999 99999998887642 3221 1235678899999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.|+..-..+++.. ++.+.-+++++.
T Consensus 76 ~p~~~~~~i~ka~---i~~gv~yvDts~ 100 (389)
T COG1748 76 APPFVDLTILKAC---IKTGVDYVDTSY 100 (389)
T ss_pred CCchhhHHHHHHH---HHhCCCEEEccc
Confidence 9988766666443 234556666544
No 187
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.20 E-value=5.9e-06 Score=74.11 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=56.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-cee--ecCchhhhccCCEEEEeeCc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV--LSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~--~~~~~~~~~~aDivil~v~~ 81 (272)
...+||.|||+|.||..++.+|.+.|. .+|+++ ||+.++++.+.+ .+ ..+ .++..+.+.++|+||.|++.
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~---~~I~V~-nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAP---KQIMLA-NRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC
Confidence 356799999999999999999999885 279999 999999988877 34 332 24445678899999999954
No 188
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.20 E-value=1.8e-05 Score=68.66 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=63.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------cCceeecCchhhhccCCEEEEee-
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------IGVKVLSDNNAVVEYSDVVVFSV- 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---------~g~~~~~~~~~~~~~aDivil~v- 79 (272)
.+||+|||+|.+|++++..|...|.. .++.++ |++.++++.... ....+..+..+.+++||+||++-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~-D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA--DELVII-DINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46999999999999999999988863 379999 998776543222 12344444456689999999986
Q ss_pred -Ccc---c-----------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 -KPQ---V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 -~~~---~-----------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|.. . +++++.++..+ .++..++..+++..
T Consensus 83 ~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~d 126 (315)
T PRK00066 83 APQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVD 126 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcHH
Confidence 211 1 23334445444 35666666655443
No 189
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.16 E-value=1.8e-05 Score=70.71 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
....+++|+|+|.+|..++..+...|. +|.++ ++++.+.......|+... +.++++..+|+||.|+.... +
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga----~ViV~-d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~---~ 270 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA----RVIVT-EVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKD---I 270 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHH---H
Confidence 346799999999999999999999998 89999 999998888777888654 34677889999999985432 2
Q ss_pred HH-HhchhcCCCCEEEEEc
Q 024121 88 AM-QIRPLLSRKKLLVSVA 105 (272)
Q Consensus 88 ~~-~l~~~l~~~~~iis~~ 105 (272)
+. .....++++.+++...
T Consensus 271 i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 271 ITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHhcCCCCcEEEEeC
Confidence 32 2344567888888664
No 190
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.15 E-value=1.5e-05 Score=69.26 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HH---HH---cC--cee--ecCchhhhccCCEE
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AF---ES---IG--VKV--LSDNNAVVEYSDVV 75 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l---~~---~g--~~~--~~~~~~~~~~aDiv 75 (272)
.+.+||+|||+|.||+.++..+...|+ .+|.++ |+++++++ .+ .. .+ ..+ +.+. +.+++||+|
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl---~~i~Lv-Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiV 78 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL---GDVVLF-DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVV 78 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEE
Confidence 345799999999999999999988885 269999 99887532 11 11 12 233 2444 568999999
Q ss_pred EEee--C--ccc-----------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 76 VFSV--K--PQV-----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 76 il~v--~--~~~-----------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|++. | +.. +.++++++.++. |+..++..+++.+
T Consensus 79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~d 132 (321)
T PTZ00082 79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLD 132 (321)
T ss_pred EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 9976 1 111 445556666654 5556666666554
No 191
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.15 E-value=1.2e-05 Score=70.59 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=64.4
Q ss_pred CCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce-eecCchhhhcc--CCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-VLSDNNAVVEY--SDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG-~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~--aDivil~v~~~ 82 (272)
++++||||||+|.++ ......+.+.+.. ..-+.++ +|++++++.+.+ .|+. .+.|.++++++ .|+|++|+|++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVV-DRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEe-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 467899999999665 5577777776520 0145677 999999888877 6774 77788888875 59999999988
Q ss_pred cHHHHHHHhchhcCCCCEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~ii 102 (272)
...++.... +..|+-|+
T Consensus 79 ~H~e~~~~A---L~aGkhVl 95 (342)
T COG0673 79 LHAELALAA---LEAGKHVL 95 (342)
T ss_pred hhHHHHHHH---HhcCCEEE
Confidence 665555332 34555555
No 192
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.15 E-value=1.4e-05 Score=69.82 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-----cCce--eecCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDivil~v~ 80 (272)
+.++++|||+|.+|.+.+..+... +. .+|.+| +|++++++.+.+ .|+. ...+.++++.++|+|+.|+|
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~---~~V~v~-~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPI---REVRVW-ARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC---CEEEEE-cCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeC
Confidence 457899999999999998888753 32 389999 999999888866 2444 35677888999999999998
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
... .++.. ..+++++.+..+
T Consensus 207 s~~--p~i~~--~~l~~g~~v~~v 226 (330)
T PRK08291 207 SEE--PILKA--EWLHPGLHVTAM 226 (330)
T ss_pred CCC--cEecH--HHcCCCceEEee
Confidence 653 22321 124567665543
No 193
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.14 E-value=2.4e-05 Score=68.67 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=61.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------------------CceeecCchhhhc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVVE 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~ 70 (272)
++||||+|+|.||..+++.+.+... -++...++++++....+.+ . ++.+..+..++..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d---~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPD---MELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCC---cEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 4699999999999999998876432 2665443777665554433 2 2344456677778
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
++|+||.|+++....+...... +.|+.+|+.
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~ 108 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYE---KAGVKAIFQ 108 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHH---HCCCEEEEc
Confidence 8999999999887776665433 345666654
No 194
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.12 E-value=2.2e-05 Score=66.48 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=64.5
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c--C--ceeecCchhhhccCCEEEEeeC
Q 024121 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I--G--VKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~--g--~~~~~~~~~~~~~aDivil~v~ 80 (272)
|+|||+ |.||..++..|...|.+...+|.++ |+++++++.... . . +..++|..+.+++||+||++.-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~-D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLY-DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEE-eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence 689999 9999999999998882122389999 998866543222 1 2 2334454688999999999651
Q ss_pred c----------------ccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 P----------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~----------------~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
. ..++++..++..+. |+.+++..+++..
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d 123 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD 123 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 1 12455566666654 7777776666554
No 195
>PRK04148 hypothetical protein; Provisional
Probab=98.10 E-value=2.2e-05 Score=58.79 Aligned_cols=92 Identities=12% Similarity=0.214 Sum_probs=71.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----ecCchhhhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~aDivil~v~~~~ 83 (272)
+.+||..||+| -|..++..|.+.|+ +|++. |.+++..+.+++.++.+ ++...+..+++|+|..+=||..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~----~ViaI-Di~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF----DVIVI-DINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 34789999999 99899999999999 99999 99999888887766543 2344567889999999988887
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+..-+-++...++.+-+|..+++
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCC
Confidence 76666667666655544444433
No 196
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.09 E-value=0.00044 Score=57.51 Aligned_cols=162 Identities=15% Similarity=0.220 Sum_probs=104.1
Q ss_pred CceeecCchhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh---C--CCCEEEEccCc-h
Q 024121 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT---G--HSRFIRVMPNT-P 130 (272)
Q Consensus 58 g~~~~~~~~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~---~--~~~~~~~~p~~-~ 130 (272)
|+++++|..|+++++|++|+-+|-.. -.++++++.++++.|.+|.+.+. ++.-.+.+.+ + +..+..+||.. |
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCT-Ipt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACT-IPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEecccc-CChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 67788888899999999999998655 57888899999999988887654 4544333333 3 35567777753 3
Q ss_pred hhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HH-HHcCCCHHHH
Q 024121 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GG-VAAGLPRELA 205 (272)
Q Consensus 131 ~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~-~~~Gl~~~~a 205 (272)
..- ++..++ -.-.++++.+.+-++.+..++. +.+..+....+.-+ +.........++.+ .+ +-.|-+.+-+
T Consensus 205 gt~-~q~Yi~--egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DM-gS~VTAv~~aGiL~Y~~~~t~IlgAP~~mi 280 (340)
T TIGR01723 205 EMK-GQVYIA--EGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDM-CSAVTAIVYAGLLAYRDAVTKILGAPADFA 280 (340)
T ss_pred CCC-CceEee--cccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 322 223332 2235789999999999999965 77776543333211 11111122222222 12 3477788888
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024121 206 LGLASQTVLGAASMVTKSG 224 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~ 224 (272)
...+..++...+.+++++|
T Consensus 281 q~qa~eaL~tmasLme~~G 299 (340)
T TIGR01723 281 QMMADEALTQIHNLMEEKG 299 (340)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888887777776544
No 197
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.08 E-value=2.9e-05 Score=67.21 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=63.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c---CceeecCchhhhccCCEEEEe
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I---GVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~---g~~~~~~~~~~~~~aDivil~ 78 (272)
.+||+|||+|++|++++..|...|. ..++.++ |+++++++... . . .+..+.+.++ +++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~Li-D~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL--ADELVLV-DVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEEC
Confidence 4699999999999999999988875 3479999 99876543222 1 1 1222345554 8999999997
Q ss_pred e--Cc--cc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 79 V--KP--QV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 79 v--~~--~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
. |+ .. ++++.+.+..+ .|+.+++..+++..
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 124 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVD 124 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHH
Confidence 5 22 11 22334455555 56777776766554
No 198
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.08 E-value=2e-05 Score=69.94 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=66.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----c-C---ceeecCchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----I-G---VKVLSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~-g---~~~~~~~~~~~~~aDivil~v 79 (272)
+..+++|||+|.++......+...-- ...+|++| +|++++++.+.+ . + +.++.+.++++.+||+|+.|+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~-~i~~V~v~-~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCP-GIDTIKIK-GRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC-CccEEEEE-CCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 56789999999999999998877321 13599999 999999887665 1 2 556788999999999999999
Q ss_pred Cccc----HHHHHHHhchhcCCCCEEEE
Q 024121 80 KPQV----VKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 80 ~~~~----~~~v~~~l~~~l~~~~~iis 103 (272)
+... ...++.. ..+++|+.|+.
T Consensus 232 ~s~~~~~s~~Pv~~~--~~lkpG~hv~~ 257 (379)
T PRK06199 232 SGETGDPSTYPYVKR--EWVKPGAFLLM 257 (379)
T ss_pred CCCCCCCCcCcEecH--HHcCCCcEEec
Confidence 6422 1233321 23578876653
No 199
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.05 E-value=7.9e-05 Score=65.50 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=61.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-ce-----eecCchh-hhccCCEEEEeeC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VK-----VLSDNNA-VVEYSDVVVFSVK 80 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~-----~~~~~~~-~~~~aDivil~v~ 80 (272)
++||+|||+ |.+|..+++.|.+... .++....+|.. ..+.+.+ .+ +. ...+..+ ...++|+||+|+|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~---~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP 77 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE---VEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALP 77 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC---ceEEEEECccc-cCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCC
Confidence 479999996 9999999999987632 26654326432 2222221 11 11 1222222 4568999999999
Q ss_pred cccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
++...++..++. ..|+.|||.++..-.
T Consensus 78 ~~~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HGVSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cHHHHHHHHHHH---hCCCEEEECCcccCC
Confidence 998888877664 367899998877644
No 200
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=98.04 E-value=3.6e-05 Score=70.25 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=59.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee-cC------chhh-hccCCEEEEeeCc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD------NNAV-VEYSDVVVFSVKP 81 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~------~~~~-~~~aDivil~v~~ 81 (272)
|+|.|+|+|.+|..++..|.+.|+ +|.++ ++++++.+.+.+ .++.+. .+ ..++ +.++|.||++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~----~v~vi-d~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN----DVTVI-DTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 689999999999999999999999 99999 999999888876 555432 11 1223 6789999999988
Q ss_pred ccHHHHHHHh
Q 024121 82 QVVKDVAMQI 91 (272)
Q Consensus 82 ~~~~~v~~~l 91 (272)
+.....+...
T Consensus 76 ~~~n~~~~~~ 85 (453)
T PRK09496 76 DETNMVACQI 85 (453)
T ss_pred hHHHHHHHHH
Confidence 7766554333
No 201
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.04 E-value=0.00057 Score=56.74 Aligned_cols=162 Identities=14% Similarity=0.221 Sum_probs=104.0
Q ss_pred CceeecCchhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh---C--CCCEEEEccCc-h
Q 024121 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT---G--HSRFIRVMPNT-P 130 (272)
Q Consensus 58 g~~~~~~~~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~---~--~~~~~~~~p~~-~ 130 (272)
|+++++|..|+++++|++++-+|-.. -..+++++.++++.|.+|.+.+. ++.-.+.+.+ + +..+..+||.. |
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT-Ipt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT-IPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc-CCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 67788888899999999999998654 57888899999999988887654 5554444333 2 34567777642 2
Q ss_pred hhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe-EEcCcccchhHHHchHHHHHHHHHHHHHH---HH-HHcCCCHHHH
Q 024121 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGPAYIFLAIEALAD---GG-VAAGLPRELA 205 (272)
Q Consensus 131 ~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~---~~-~~~Gl~~~~a 205 (272)
.. .|...+.- .-.++++.+.+-++.+..|+. +.+..+....+.-+ +.........++.+ .+ +-.|-+.+-+
T Consensus 207 gt--~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DM-gS~VTAv~~aGiL~Y~~~~tqIlgAP~~mi 282 (342)
T PRK00961 207 EM--KGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDM-CSAVTAIVYAGILAYRDAVTQILGAPADFA 282 (342)
T ss_pred CC--CCceeccc-ccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 22 23333321 224789999999999999965 77776544333211 11111122222222 12 3467788888
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024121 206 LGLASQTVLGAASMVTKSG 224 (272)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~ 224 (272)
.+.+..++...+.+++++|
T Consensus 283 e~qa~eaL~tmasLme~~G 301 (342)
T PRK00961 283 QMMADEALTQITALMREEG 301 (342)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888887777776644
No 202
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.04 E-value=2.9e-05 Score=68.89 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee------cCchhhhccCCEEEEeeCc-
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL------SDNNAVVEYSDVVVFSVKP- 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~------~~~~~~~~~aDivil~v~~- 81 (272)
..++.|||+|.+|...++.+...|. +|+++ +|++++.+.+.. .+..+. .+..+.+.++|+||.|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa----~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA----TVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 4679999999999999999999998 89999 999988877765 343221 2235567899999999732
Q ss_pred -ccHHHHH-HHhchhcCCCCEEEEEc
Q 024121 82 -QVVKDVA-MQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 -~~~~~v~-~~l~~~l~~~~~iis~~ 105 (272)
.....++ .+....++++.+|+++.
T Consensus 242 g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 1111111 22333457888999864
No 203
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.04 E-value=1.9e-05 Score=67.37 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=64.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeecCchhhhccCCEEEEeeCcc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|+.++++.+.+ .+ +....+..+.+.++|+||-|+|..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~---~~V~v~-~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV---AEITIV-NRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 456789999999999999999999983 289999 999999888766 22 222112335567899999999854
Q ss_pred cHHH--HHHHhchhcCCCCEEEEEc
Q 024121 83 VVKD--VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 83 ~~~~--v~~~l~~~l~~~~~iis~~ 105 (272)
.... ...-....++++.+++|+.
T Consensus 197 ~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 197 MSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCCHHHcCCCCEEEEee
Confidence 3211 0000012346677888774
No 204
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.02 E-value=2e-05 Score=63.55 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=62.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----Cce--ee--cCc---hhhhccCCE
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVK--VL--SDN---NAVVEYSDV 74 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~~--~~--~~~---~~~~~~aDi 74 (272)
.+.+++.|+|. |.+|..++..|.+.|+ +|+++ +|+.++.+.+.+ . +.. .. .+. .+.++++|+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~----~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di 100 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA----RVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADV 100 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCE
Confidence 35679999995 9999999999999998 99999 999988877654 1 222 11 121 356778999
Q ss_pred EEEeeCcccHHHHHHHhchhcCCCCEEEEEc
Q 024121 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 75 vil~v~~~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
||.++|..... ........+++.+++|+.
T Consensus 101 Vi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 101 VFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred EEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 99999765531 111112234566778764
No 205
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.02 E-value=2e-05 Score=70.25 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=71.2
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce---e---------------ec--Cchh--
Q 024121 11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---V---------------LS--DNNA-- 67 (272)
Q Consensus 11 ~~IgiIG~G~mG~~l-a~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---~---------------~~--~~~~-- 67 (272)
|||.++|+|+||++. +..|.++|+ +|++. +++++..+.+.+.|.- + .. +.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~----~V~~v-d~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~ 75 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGF----EVTFV-DVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVI 75 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHH
Confidence 789999999999855 777888998 99999 9988888888775521 1 00 1122
Q ss_pred -hhccCCEEEEeeCcccHHHHHHHhchhcCC--------CCEEEEEcCCCCH-HHHHHH
Q 024121 68 -VVEYSDVVVFSVKPQVVKDVAMQIRPLLSR--------KKLLVSVAAGVKL-KDLQEW 116 (272)
Q Consensus 68 -~~~~aDivil~v~~~~~~~v~~~l~~~l~~--------~~~iis~~~~~~~-~~l~~~ 116 (272)
.+.++|+|.++|++...+++...+.+.+.+ .-+|++|.++..- +.+++.
T Consensus 76 ~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~ 134 (381)
T PRK02318 76 EAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKH 134 (381)
T ss_pred HHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHH
Confidence 234789999999888777777666554432 2378899888765 334433
No 206
>PRK15076 alpha-galactosidase; Provisional
Probab=98.01 E-value=8.9e-05 Score=67.02 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=47.8
Q ss_pred CeEEEEcccHHHHHHHH--HHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeecCchhhhccCCEEE
Q 024121 11 FILGFIGAGKMAESIAK--GVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~--~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDivi 76 (272)
+||+|||+|.||.+.+. .+....-+...+|.++ |+++++++.... .+ +..+.|..+++++||+||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLv-Did~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALM-DIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 79999999999976655 5552211233489999 999987653211 12 334556578899999999
Q ss_pred EeeC
Q 024121 77 FSVK 80 (272)
Q Consensus 77 l~v~ 80 (272)
.++-
T Consensus 81 ~ti~ 84 (431)
T PRK15076 81 NAIQ 84 (431)
T ss_pred Eeee
Confidence 9973
No 207
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.99 E-value=2.5e-05 Score=61.28 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
...++|.|||+|.| |..+++.|.+.|. +|++. +|+.+ +..+.+.++|+||.|++...+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~----~V~v~-~r~~~--------------~l~~~l~~aDiVIsat~~~~i-- 100 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA----TVTVC-HSKTK--------------NLKEHTKQADIVIVAVGKPGL-- 100 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC----EEEEE-ECCch--------------hHHHHHhhCCEEEEcCCCCce--
Confidence 46789999999997 8889999999998 89999 88742 345668899999999975432
Q ss_pred HHHHhchhcCCCCEEEEEcCC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~ 107 (272)
+-.+ .++++.++||+..+
T Consensus 101 i~~~---~~~~~~viIDla~p 118 (168)
T cd01080 101 VKGD---MVKPGAVVIDVGIN 118 (168)
T ss_pred ecHH---HccCCeEEEEccCC
Confidence 1111 24567888887543
No 208
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.99 E-value=4.6e-05 Score=52.91 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=48.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-HHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~~~ 86 (272)
...++++|+|+|.+|..++..+.+.+. .+|++| +| |++|.|++... +.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~---~~v~v~-~r--------------------------di~i~~~~~~~~~~~ 70 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG---KKVVLC-DR--------------------------DILVTATPAGVPVLE 70 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC--------------------------CEEEEcCCCCCCchH
Confidence 456899999999999999999999842 289999 88 99999996544 322
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
+....++++.+|+++
T Consensus 71 ---~~~~~~~~~~~v~~~ 85 (86)
T cd05191 71 ---EATAKINEGAVVIDL 85 (86)
T ss_pred ---HHHHhcCCCCEEEec
Confidence 112234677888765
No 209
>PRK11579 putative oxidoreductase; Provisional
Probab=97.97 E-value=0.00012 Score=64.59 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHc-CceeecCchhhhc--cCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDivil~v~~~~ 83 (272)
.+||||||+|.||.. .+..+.+. +. ++. ++ +++++++. .+. +...+.|.+++++ +.|+|++|+|+..
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGL----ELAAVS-SSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCC----EEEEEE-CCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 479999999999984 45555543 34 665 56 99987654 233 5567788888886 5799999999876
Q ss_pred HHHHHHHhchhcCCCCEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~ii 102 (272)
..++..+.. ..|+-|+
T Consensus 77 H~~~~~~al---~aGkhVl 92 (346)
T PRK11579 77 HFPLAKAAL---EAGKHVV 92 (346)
T ss_pred HHHHHHHHH---HCCCeEE
Confidence 555554433 3455554
No 210
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.95 E-value=7e-05 Score=63.70 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=60.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHH--HHHHHcCceee-cCchhhhc--cCCEEEEeeCcccH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRR--DAFESIGVKVL-SDNNAVVE--YSDVVVFSVKPQVV 84 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~--~~l~~~g~~~~-~~~~~~~~--~aDivil~v~~~~~ 84 (272)
+||||||+|+||..++..+.+... .++. ++ ++++++. +...+.|+... .+.+++++ +.|+||+|+|+...
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~---~elvaV~-d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEH---LEMVAMV-GIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCC---cEEEEEE-eCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 689999999999988887776432 1554 56 8888653 33344787643 46666665 57899999998877
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.+...... ..|+.+++.
T Consensus 78 ~e~a~~al---~aGk~VIde 94 (285)
T TIGR03215 78 ARHARLLA---ELGKIVIDL 94 (285)
T ss_pred HHHHHHHH---HcCCEEEEC
Confidence 66665443 456777654
No 211
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.92 E-value=9.1e-05 Score=63.98 Aligned_cols=95 Identities=15% Similarity=0.286 Sum_probs=62.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH----c---CceeecCchhhhccCCEEEEee-
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----I---GVKVLSDNNAVVEYSDVVVFSV- 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~----~---g~~~~~~~~~~~~~aDivil~v- 79 (272)
||+|||+|++|+++|..|...+. ..++.++ |+++++++ +|.. . .+.+..+..+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~--~~elvL~-Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGL--FSEIVLI-DVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999998876 3379999 99876543 2222 1 2334334456789999999986
Q ss_pred -C--cccH--------------HHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 -K--PQVV--------------KDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 -~--~~~~--------------~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| |..- +++.+++..+ .|+.+++-.+++...
T Consensus 78 ~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvDv 124 (307)
T cd05290 78 PSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLDI 124 (307)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHHH
Confidence 2 2221 2233444444 366777767676543
No 212
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.92 E-value=0.00021 Score=52.36 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=59.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hh-----hhccCCEEEEeeCcccH
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDivil~v~~~~~ 84 (272)
|-|+|+|.+|..+++.|.+.+. +|.+. ++++++.+.+.+.|+.+. .|. .+ -+++++.|+++++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~----~vvvi-d~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI----DVVVI-DRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS----EEEEE-ESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC----EEEEE-ECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 5689999999999999999876 89999 999999999988876542 221 11 25689999999987754
Q ss_pred HHHH-HHhchhcCCCCEEE
Q 024121 85 KDVA-MQIRPLLSRKKLLV 102 (272)
Q Consensus 85 ~~v~-~~l~~~l~~~~~ii 102 (272)
.-.+ ..+.. +.+...++
T Consensus 76 n~~~~~~~r~-~~~~~~ii 93 (116)
T PF02254_consen 76 NLLIALLARE-LNPDIRII 93 (116)
T ss_dssp HHHHHHHHHH-HTTTSEEE
T ss_pred HHHHHHHHHH-HCCCCeEE
Confidence 4333 33333 33544444
No 213
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.90 E-value=5.2e-05 Score=64.83 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=62.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----C-ceee--cCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----G-VKVL--SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g-~~~~--~~~~~~~~~aDivil~v~ 80 (272)
..+++.|||+|.+|++++..|.+.|. .+|+++ ||+.++++.+.+ . . ..+. .+..+.+.++|+||-|+|
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~---~~I~I~-nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGV---ERLTIF-DVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCc
Confidence 45789999999999999999999886 379999 999999888865 1 1 2221 233345678999999987
Q ss_pred cccHHHHHHHhc-hhcCCCCEEEEEc
Q 024121 81 PQVVKDVAMQIR-PLLSRKKLLVSVA 105 (272)
Q Consensus 81 ~~~~~~v~~~l~-~~l~~~~~iis~~ 105 (272)
.......-..+. ..++++.+++|+.
T Consensus 202 ~Gm~~~~~~~~~~~~l~~~~~v~Div 227 (284)
T PRK12549 202 TGMAKHPGLPLPAELLRPGLWVADIV 227 (284)
T ss_pred CCCCCCCCCCCCHHHcCCCcEEEEee
Confidence 542110000010 2255666777764
No 214
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.88 E-value=0.00013 Score=60.18 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----HHHH-------HHHHH-cCc-eeecCchhhhccCC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKRR-------DAFES-IGV-KVLSDNNAVVEYSD 73 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~----~~~~-------~~l~~-~g~-~~~~~~~~~~~~aD 73 (272)
..+.+||.|+|+|.+|.+++..|.+.|. +.++|+++ ||+ .++. +.+.+ .+. ....+..+.++++|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~iv-dr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-KPENIVVV-DSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-CcceEEEE-eCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 3456899999999999999999999987 22269999 998 4432 23333 221 11124557788999
Q ss_pred EEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 74 VVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 74 ivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+||-++++..+ +++++.+ .++.++++++++.+.
T Consensus 100 vlIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP~~e 133 (226)
T cd05311 100 VFIGVSRPGVVKKEMIKKM----AKDPIVFALANPVPE 133 (226)
T ss_pred EEEeCCCCCCCCHHHHHhh----CCCCEEEEeCCCCCc
Confidence 99999976544 3444444 366777777776544
No 215
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.87 E-value=7.3e-05 Score=64.55 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=60.0
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----c--Ccee--ecCchhhhccCCEEEEeeC
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I--GVKV--LSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~--g~~~--~~~~~~~~~~aDivil~v~ 80 (272)
|+|||+|.||..++..+...|+. +|+++ |+++++++. +.. . ...+ ..+ .+.+++||+||+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~---eV~L~-Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG---DVVLL-DIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc---EEEEE-eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecC
Confidence 68999999999999999888752 89999 998765421 111 1 1223 234 355899999999872
Q ss_pred -c---c------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 -P---Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 -~---~------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
| . .+++++.++.++. |+.++|-.+++..
T Consensus 76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~d 119 (300)
T cd01339 76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLD 119 (300)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 1 1 1345566666655 5556665656553
No 216
>PLN02602 lactate dehydrogenase
Probab=97.85 E-value=0.00018 Score=63.17 Aligned_cols=95 Identities=19% Similarity=0.331 Sum_probs=62.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c-Cceee--cCchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I-GVKVL--SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~-g~~~~--~~~~~~~~~aDivil~v 79 (272)
+||+|||+|++|++++..|...+. ..++.++ |+++++++..+ . . ...+. .+. +.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l--~~el~Li-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL--ADELALV-DVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-eCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECC
Confidence 699999999999999999998775 3479999 99876543222 1 1 13443 233 4489999999995
Q ss_pred --C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 --K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 --~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| +.. ++++...+..+ .|+.+++..+++...
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvdv 159 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDV 159 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchHH
Confidence 2 111 12333445554 466677777666543
No 217
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.85 E-value=6.7e-05 Score=66.01 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=61.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-c----C---ceee-cCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-I----G---VKVL-SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~----g---~~~~-~~~~~~~~~aDivil~v 79 (272)
|||+|||+ |.+|..+.+.|.+.-. .++. ++ ++....-+.+.. . + ..+. .+..+...++|+||+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~---~el~~l~-~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~al 76 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE---VEITYLV-SSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLAL 76 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC---ceEEEEe-ccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECC
Confidence 68999998 9999999999987522 2666 55 443322222221 1 1 1121 13445556899999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|.....++..++. ..|..|||.++..-
T Consensus 77 P~~~s~~~~~~~~---~~G~~VIDlS~~fR 103 (346)
T TIGR01850 77 PHGVSAELAPELL---AAGVKVIDLSADFR 103 (346)
T ss_pred CchHHHHHHHHHH---hCCCEEEeCChhhh
Confidence 9998888887764 35788999876553
No 218
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.83 E-value=7.5e-05 Score=68.49 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=54.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceee--cCchhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDivil~v~~~~ 83 (272)
...++++|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+ .+.... .+..+ +.++|+||.|+|...
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~----~V~i~-~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~ 402 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA----ELLIF-NRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSV 402 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCC
Confidence 456789999999999999999999998 99999 999988887765 232221 12222 568999999998764
No 219
>PRK05442 malate dehydrogenase; Provisional
Probab=97.82 E-value=0.00013 Score=63.58 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHH----HHHH------cCceeecCchhhhcc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFES------IGVKVLSDNNAVVEY 71 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~----~l~~------~g~~~~~~~~~~~~~ 71 (272)
.+.+||+|||+ |++|++++..|...+... +.++.++ |+++. +++ ++.. .+..+..+..+.+++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 45679999998 999999999998876521 1268888 88542 221 1211 123444455577899
Q ss_pred CCEEEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 72 SDVVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 72 aDivil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
||+||++- | +. . ++++.++|..+..++.+++-.++++..
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 135 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT 135 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence 99999985 2 21 1 334445566655467777767676554
No 220
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.80 E-value=0.0001 Score=63.62 Aligned_cols=93 Identities=15% Similarity=0.265 Sum_probs=62.0
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c--Cceee-cCchhhhccCCEEEEeeC--
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I--GVKVL-SDNNAVVEYSDVVVFSVK-- 80 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~--g~~~~-~~~~~~~~~aDivil~v~-- 80 (272)
|+|||+|.+|++++..|+..|.. .++.++ |+++++++.... . ...+. .+..+.+++||+||++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~--~el~l~-D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA--SELVLV-DVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAP 77 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCC
Confidence 68999999999999999988842 279999 998876654433 1 11222 122457899999999973
Q ss_pred ccc--------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 PQV--------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~~~--------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
... ++++..++..+- |+.+++..+++..
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d 119 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVD 119 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHH
Confidence 211 334445555554 6667776666543
No 221
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.79 E-value=0.00014 Score=63.06 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HHHH--cCcee--ecCc---hhhhccCCE
Q 024121 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFES--IGVKV--LSDN---NAVVEYSDV 74 (272)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l~~--~g~~~--~~~~---~~~~~~aDi 74 (272)
|.-.++.||+|||+ |++|+.++..|...+. ..++.++ |++....+ ++.. ....+ ..+. .+.++++|+
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~--~~elvL~-Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDv 79 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPH--VSELSLY-DIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADL 79 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCC--CCEEEEE-ecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCE
Confidence 44456779999999 9999999999986654 2389999 98432221 2222 11222 2221 467899999
Q ss_pred EEEee-C-cc--------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 75 VVFSV-K-PQ--------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 75 vil~v-~-~~--------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|+++. . .. .++++++.+..+ .++.+|+-.++++.
T Consensus 80 VVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvd 129 (321)
T PTZ00325 80 VLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVN 129 (321)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHH
Confidence 99987 2 11 112333445444 56667776666554
No 222
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.78 E-value=0.00027 Score=57.19 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...||+|+|+|.||+.++..|...|+ .+++++ |++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv---g~i~lv-D~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI---GKLILV-DFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 34689999999999999999999998 258888 776
No 223
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.76 E-value=0.00058 Score=59.79 Aligned_cols=98 Identities=13% Similarity=0.207 Sum_probs=69.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEE-EEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCc---
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG--VLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP--- 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g--~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~--- 81 (272)
+..||+|||+ .||...+..+.+.. + ++. ++ ++++++++++.+ .|+....+.++++.+.|++++++|.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~----eLvaV~-d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P 75 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERF----ELAGIL-AQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIV 75 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCc----EEEEEE-cCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCC
Confidence 4579999999 68999998887753 4 655 56 999999988887 7887788999999888888888742
Q ss_pred -ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHH
Q 024121 82 -QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (272)
Q Consensus 82 -~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~ 116 (272)
..-.++..+. +..|+-|+ +-+++..++.++.
T Consensus 76 ~~~H~e~a~~a---L~aGkHVL-~EKPla~~Ea~el 107 (343)
T TIGR01761 76 GGQGSALARAL---LARGIHVL-QEHPLHPRDIQDL 107 (343)
T ss_pred CccHHHHHHHH---HhCCCeEE-EcCCCCHHHHHHH
Confidence 3434444333 34555555 3356655554443
No 224
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.74 E-value=0.00017 Score=53.07 Aligned_cols=94 Identities=18% Similarity=0.314 Sum_probs=63.9
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 11 FILGFIG----AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG----~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++|+||| -+..|..+.++|.+.|+ +|+.. +...... .|.....+..|.-...|++++++|++.+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~----~v~~V-np~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY----EVYPV-NPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-----EEEEE-STTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC----EEEEE-CCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHHHHH
Confidence 5799999 59999999999999999 99988 6654222 577788888874478999999999999999
Q ss_pred HHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+++++... ....+|+ .++...+++.+..
T Consensus 71 ~v~~~~~~-g~~~v~~--~~g~~~~~~~~~a 98 (116)
T PF13380_consen 71 IVDEAAAL-GVKAVWL--QPGAESEELIEAA 98 (116)
T ss_dssp HHHHHHHH-T-SEEEE---TTS--HHHHHHH
T ss_pred HHHHHHHc-CCCEEEE--EcchHHHHHHHHH
Confidence 99987654 3444555 3444444444443
No 225
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.74 E-value=0.00025 Score=57.48 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=58.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeecC--chhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDivil~v~~~~ 83 (272)
.+.++|.|||.|.+|...++.|.+.|+ +|+++ +++. +.+..+...+ +..... ..+.+.++|+||.|+.++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga----~V~VI-s~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA----HIVVI-SPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-cCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 356899999999999999999999998 99999 8764 2334444433 332211 1234678999999998888
Q ss_pred HHHHHHHhc
Q 024121 84 VKDVAMQIR 92 (272)
Q Consensus 84 ~~~v~~~l~ 92 (272)
+...+.+..
T Consensus 83 lN~~i~~~a 91 (202)
T PRK06718 83 VNEQVKEDL 91 (202)
T ss_pred HHHHHHHHH
Confidence 877765544
No 226
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.72 E-value=0.00015 Score=61.93 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeec---CchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLS---DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~---~~~~~~~~aDivil~v~ 80 (272)
..+++.|||+|-+|++++..|.+.|. .+|+++ +|++++++.+.+ .+ +.... +..+.+.++|+||-|+|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~---~~i~I~-nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGV---TDITVI-NRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCC---CeEEEE-eCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCC
Confidence 46789999999999999999999986 379999 999999988876 21 11111 12244568999999997
Q ss_pred cc
Q 024121 81 PQ 82 (272)
Q Consensus 81 ~~ 82 (272)
..
T Consensus 200 ~g 201 (282)
T TIGR01809 200 AD 201 (282)
T ss_pred CC
Confidence 54
No 227
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.72 E-value=0.00015 Score=62.73 Aligned_cols=95 Identities=24% Similarity=0.303 Sum_probs=61.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHH----HH----HcC--cee--ecCchhhhccCCEE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDA----FE----SIG--VKV--LSDNNAVVEYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~----l~----~~g--~~~--~~~~~~~~~~aDiv 75 (272)
|||+|||+ |.+|..++..|...|+. .+|.++ +|++ ++++. +. ..+ ..+ ..+ .+.+.+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~--~~v~lv-d~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV--KEINLI-SRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CEEEEE-ECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEE
Confidence 79999998 99999999999998871 258888 8854 33321 11 112 223 234 4558999999
Q ss_pred EEeeC--cc---c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 76 VFSVK--PQ---V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 76 il~v~--~~---~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|+|+. .. . ++++...+.++. ++.++|-.+++++.
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~ 126 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDV 126 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHH
Confidence 99983 21 1 334445555554 55566656666554
No 228
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.72 E-value=0.00015 Score=57.63 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=49.2
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee----c---CchhhhccCCEEEEeeC
Q 024121 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDivil~v~ 80 (272)
|.|+|+ |.+|..+++.|++.|+ +|++. .|++++.+. ..++++. . +..++++++|.||.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~----~V~~~-~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH----EVTAL-VRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS----EEEEE-ESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCC----EEEEE-ecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 678985 9999999999999999 99999 999988776 4455432 1 23456779999999995
No 229
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.71 E-value=0.00035 Score=61.94 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCC-CCcEEE----EeCCCHHHHHHHHH----------cCceeecCchhhhccCC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLP-PDRICT----AVHSNLKRRDAFES----------IGVKVLSDNNAVVEYSD 73 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~-~~~V~v----~~~r~~~~~~~l~~----------~g~~~~~~~~~~~~~aD 73 (272)
..||+|||+ |++|++++..|...+... ..+|.+ + |++.++++..+- .++.+..+..+.+++||
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-D~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-ERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-CccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 469999999 999999999999888743 123544 5 777776543221 13444455567799999
Q ss_pred EEEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 74 VVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 74 ivil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+||++- | |. . ++++...|.++.+|+.+++-.+++...
T Consensus 123 IVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv 175 (387)
T TIGR01757 123 WALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175 (387)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHH
Confidence 999975 2 21 2 334445566655577777766666543
No 230
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.70 E-value=0.00056 Score=64.68 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hhh-----hccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDivil~v~~ 81 (272)
..+|-|+|+|++|+.+++.|.+.|+ ++++. |+|+++.+.+++.|..+. .|. .+. ++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM----RITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 3679999999999999999999999 99999 999999999988776532 221 222 5689999999987
Q ss_pred ccHH-HHHHHhchhcCCCCEEEE
Q 024121 82 QVVK-DVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 82 ~~~~-~v~~~l~~~l~~~~~iis 103 (272)
+... .++..++.. .|+..++.
T Consensus 475 ~~~n~~i~~~~r~~-~p~~~Iia 496 (601)
T PRK03659 475 PEDTMKIVELCQQH-FPHLHILA 496 (601)
T ss_pred HHHHHHHHHHHHHH-CCCCeEEE
Confidence 6544 444444443 45544543
No 231
>PRK10206 putative oxidoreductase; Provisional
Probab=97.69 E-value=0.00035 Score=61.54 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHH-HHHHHHh--CCCCCCCcEE-EEeCCCHHHHHHHHHcC-ceeecCchhhhc--cCCEEEEeeCcc
Q 024121 10 SFILGFIGAGKMAES-IAKGVAK--SGVLPPDRIC-TAVHSNLKRRDAFESIG-VKVLSDNNAVVE--YSDVVVFSVKPQ 82 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~-la~~l~~--~g~~~~~~V~-v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~aDivil~v~~~ 82 (272)
+.||||||+|.++.. .+..+.. .++ +|. ++ ++++++.+...+.+ +...+|.+++++ +.|+|++|+|+.
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIF-RRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCE----EEEEEE-cCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 368999999998753 3444433 234 665 56 99886653333454 666778888886 579999999988
Q ss_pred cHHHHHHH
Q 024121 83 VVKDVAMQ 90 (272)
Q Consensus 83 ~~~~v~~~ 90 (272)
...++...
T Consensus 76 ~H~~~~~~ 83 (344)
T PRK10206 76 SHFEYAKR 83 (344)
T ss_pred HHHHHHHH
Confidence 65555544
No 232
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.69 E-value=0.00014 Score=63.52 Aligned_cols=95 Identities=13% Similarity=0.241 Sum_probs=59.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHHcC--ceeecCchhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIG--VKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~~g--~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
++++||+|+|+ |..|.-+.+.|.+.+| +..++....++ +++-+ +.-.+ ..+.....+.++++|++|+|+|+..
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~h-P~~~l~~v~s~--~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~ 78 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDF-PVGTLHLLASS--ESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAV 78 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCC-CceEEEEEECc--ccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHH
Confidence 34589999997 9999999999998777 43444444122 22111 11112 2222111222578999999999877
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
..++.+.+. ..|..+||.++..
T Consensus 79 s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 79 SRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred HHHHHHHHH---HCCCeEEECchhh
Confidence 777666654 3577899987654
No 233
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.68 E-value=0.0002 Score=55.70 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=59.5
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-ceeec-Cc-hhhhccCCEE
Q 024121 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLS-DN-NAVVEYSDVV 75 (272)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-~~~~~-~~-~~~~~~aDiv 75 (272)
|.-||-.. +.++|.|||.|.+|...++.|.+.|+ +|+++ ++. ..+++.+.+ +.... .. ++-++++|+|
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga----~V~VI-sp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lV 74 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGA----FVTVV-SPE--ICKEMKELPYITWKQKTFSNDDIKDAHLI 74 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCc--cCHHHHhccCcEEEecccChhcCCCceEE
Confidence 33455543 35799999999999999999999999 99999 643 333444422 22211 11 2236789999
Q ss_pred EEeeCcccHHHHHHHhc
Q 024121 76 VFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~ 92 (272)
|.++.++.+...+.+..
T Consensus 75 iaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 75 YAATNQHAVNMMVKQAA 91 (157)
T ss_pred EECCCCHHHHHHHHHHH
Confidence 99999888887776554
No 234
>PRK05086 malate dehydrogenase; Provisional
Probab=97.68 E-value=0.00019 Score=62.27 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHH---HHHHHcC--cee----ecCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRR---DAFESIG--VKV----LSDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~aDivil~v 79 (272)
|||+|||+ |.+|++++..|.. .+. ..++.++ +|++... -++...+ ..+ ..+..+.++++|+||+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~--~~el~L~-d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC--ccEEEEE-ecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence 79999999 9999999988754 222 2278899 8875421 1232211 222 234356788999999997
Q ss_pred --Ccc--------------cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 --KPQ--------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 --~~~--------------~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+.. .++++++.+.++ .++.+++..+++..
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 222 234445556555 57777777777664
No 235
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.68 E-value=0.00018 Score=56.31 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=49.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---Cceeec--CchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g~~~~~--~~~~~~~~aDivil~v 79 (272)
|||+|||+ |..|+.|.+-..+.|| +|+.+ -||+++....+.. ...+++ +..+.+..-|+||.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-vRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-VRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-EeChHhccccccceeecccccChhhhHhhhcCCceEEEec
Confidence 79999998 9999999999999999 99999 8999887554221 112222 2235678899999998
No 236
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.67 E-value=0.00041 Score=68.61 Aligned_cols=91 Identities=24% Similarity=0.244 Sum_probs=62.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCC----------CCcEEEEeCCCHHHHHHHHH-c-C---cee-ecCchhhh---c
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLP----------PDRICTAVHSNLKRRDAFES-I-G---VKV-LSDNNAVV---E 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~----------~~~V~v~~~r~~~~~~~l~~-~-g---~~~-~~~~~~~~---~ 70 (272)
++||+|||+|.||+..+..|.+..... ...|.+. ++++++++++.+ . + +.+ ..+.+++. +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 568999999999999999998753211 0137888 999998888776 2 5 233 34544443 5
Q ss_pred cCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 71 ~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
++|+|+.|+|+....++..... ..++-+++.
T Consensus 648 ~~DaVIsalP~~~H~~VAkaAi---eaGkHvv~e 678 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKACI---ELKKHLVTA 678 (1042)
T ss_pred CCCEEEECCCchhhHHHHHHHH---HcCCCEEEC
Confidence 7999999999876555554322 334445543
No 237
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.66 E-value=0.00024 Score=61.77 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=62.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHHH--HH----HHHH------cCceeecCchhhhccCCE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLKR--RD----AFES------IGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~~--~~----~l~~------~g~~~~~~~~~~~~~aDi 74 (272)
+||+|||+ |++|++++..|...|... ..++.++ |++++. ++ ++.. ..+.+..+..+.+++||+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLL-ELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEE-ecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 69999999 999999999999877621 1168888 885322 21 1211 123444455577899999
Q ss_pred EEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 75 VVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 75 vil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
||++- | +. . ++++..++..+-.|+.+++-.++++..
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 133 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT 133 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH
Confidence 99985 2 21 1 334445565554346677766666543
No 238
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=0.00067 Score=58.28 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc---eeecCchhhhccC--CEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV---KVLSDNNAVVEYS--DVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~a--Divil~v~~~ 82 (272)
...|+||+|+|.|++-.++.|...-- ....|...++|+.+++..+++ .++ ++..+.++++++. |+|.+++|..
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~-s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPE-SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcc-cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 45689999999999999998875321 011666444999999998888 444 5778889998865 9999999866
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+..+++.-+.. +...+++.-.-.++.++.++.+
T Consensus 84 qH~evv~l~l~--~~K~VL~EKPla~n~~e~~~iv 116 (351)
T KOG2741|consen 84 QHYEVVMLALN--KGKHVLCEKPLAMNVAEAEEIV 116 (351)
T ss_pred cHHHHHHHHHH--cCCcEEecccccCCHHHHHHHH
Confidence 65555544432 2333555433344555555443
No 239
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.64 E-value=0.00072 Score=61.74 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=64.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--Ccee-ecCc--h-----hhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKV-LSDN--N-----AVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g~~~-~~~~--~-----~~~~~aDivil~ 78 (272)
..++|-|+|+|.+|..+++.|.+.|+ +|++. ++++++.+.+.+. ++.+ ..|. . .-++++|.|+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~----~v~vi-d~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY----SVKLI-ERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 46889999999999999999999999 99999 9999988888763 4432 2222 1 124689999988
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
++++...-.+..+...+.+.++++-+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 88765443333333334455555433
No 240
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.63 E-value=0.00016 Score=51.29 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=56.9
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hCCCCCCCcE-EEEeCCCHHHHHHHHH-cCceeecCchhhhcc--CCEEEEeeCcccH
Q 024121 10 SFILGFIGAGKMAESIAKGVA-KSGVLPPDRI-CTAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~-~~g~~~~~~V-~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDivil~v~~~~~ 84 (272)
..++.++|+|++|.+++..+. ..|+ .+ .++ +.++++.- .+ .|+.+..+..++.+. .|+-++|||+..+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~-dv~~~~~G--~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a 75 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVF-DVDPEKIG--KEIGGIPVYGSMDELEEFIEIDIAIITVPAEAA 75 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEE-EECTTTTT--SEETTEEEESSHHHHHHHCTTSEEEEES-HHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEE-EcCCCccC--cEECCEEeeccHHHhhhhhCCCEEEEEcCHHHH
Confidence 458999999999999875544 4566 54 456 88887543 11 477777677777665 9999999999999
Q ss_pred HHHHHHhch
Q 024121 85 KDVAMQIRP 93 (272)
Q Consensus 85 ~~v~~~l~~ 93 (272)
.++..++..
T Consensus 76 ~~~~~~~~~ 84 (96)
T PF02629_consen 76 QEVADELVE 84 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 241
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.63 E-value=0.00051 Score=59.75 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCH--HHHH----HHHH------cCceeecCchhhhccC
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRD----AFES------IGVKVLSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~----~l~~------~g~~~~~~~~~~~~~a 72 (272)
+..||+|||+ |.+|++++..|...+... ..++.++ |+++ ++++ ++.. .+..+..+..+.+++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLL-DIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEE-ecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 3469999998 999999999999887521 1168889 8854 2222 1211 1233434455678999
Q ss_pred CEEEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 73 DVVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 73 Divil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|+||++- | +. . ++++.+++..+-.++.+++-.++++..
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 134 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT 134 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 9999985 2 21 1 334445566654337777766666543
No 242
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.63 E-value=0.0005 Score=62.01 Aligned_cols=99 Identities=11% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhC-------CCCCCCcEEEEeCCCHHHHHHHH----H------cCceeecCchhhhc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKS-------GVLPPDRICTAVHSNLKRRDAFE----S------IGVKVLSDNNAVVE 70 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~-------g~~~~~~V~v~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~ 70 (272)
+..||+|||+ |++|++++..|... +. ..++.++ |++.++++-.+ . ..+.+..+..+.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i--~~eLvli-D~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPI--ALKLLGS-ERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCc--ccEEEEE-cCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 3468999999 99999999999887 43 1368888 99887754322 1 12344455567799
Q ss_pred cCCEEEEee--C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 71 YSDVVVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 71 ~aDivil~v--~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
+||+||++- | +.. ++++..+|..+..++.++|-.+++...
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv 231 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT 231 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH
Confidence 999999986 2 211 334445565544567777767666544
No 243
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.63 E-value=0.00067 Score=63.71 Aligned_cols=88 Identities=8% Similarity=0.249 Sum_probs=63.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc--hhh-----hccCCEEEEeeCcc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVKPQ 82 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDivil~v~~~ 82 (272)
-+|-|+|+|++|+.+++.|.+.|+ ++.+. |+|+++.+++++.|..+. .|. .+. ++++|.++++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~----~vvvI-d~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI----PLVVI-ETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh
Confidence 468999999999999999999999 99999 999999999988776432 221 222 45899999998776
Q ss_pred cHH-HHHHHhchhcCCCCEEEEE
Q 024121 83 VVK-DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~-~v~~~l~~~l~~~~~iis~ 104 (272)
.-. .+...+... .++..++.-
T Consensus 493 ~~~~~iv~~~~~~-~~~~~iiar 514 (558)
T PRK10669 493 YEAGEIVASAREK-RPDIEIIAR 514 (558)
T ss_pred HHHHHHHHHHHHH-CCCCeEEEE
Confidence 433 344334333 355555543
No 244
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.63 E-value=6.3e-05 Score=61.61 Aligned_cols=79 Identities=18% Similarity=0.346 Sum_probs=52.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCcEEEEeCCCHHHHHHHHHcCcee--ecCchhhhc--cCCEEEEeeCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVE--YSDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~--~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~aDivil~v~~~ 82 (272)
...+|+|||+|.+|..+++.+. ..|+ ++..+.++++++..... .|..+ ..+..+.++ +.|.+++|+|..
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~----~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGF----KIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCc----EEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 4568999999999999988633 4566 66643388876543211 23322 234455554 499999999988
Q ss_pred cHHHHHHHhc
Q 024121 83 VVKDVAMQIR 92 (272)
Q Consensus 83 ~~~~v~~~l~ 92 (272)
...++...+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8777766554
No 245
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.58 E-value=0.00018 Score=56.68 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=63.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-c---------------------
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S--------------------- 63 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~--------------------- 63 (272)
......+|.|+|.|+.|..-+..+...|+ +++++ +.++++.+++...+.... .
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa----~v~~~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGA----EVVVP-DERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCC----EEEec-cCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHH
Confidence 33445799999999999999999999999 99999 999988877766443211 1
Q ss_pred ----CchhhhccCCEEEEee--CcccHHHHH-HHhchhcCCCCEEEEEc
Q 024121 64 ----DNNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 64 ----~~~~~~~~aDivil~v--~~~~~~~v~-~~l~~~l~~~~~iis~~ 105 (272)
...+.+..+|+||.+. +......++ .+....++++.+|+|++
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 1234567899999765 444444444 23334467888898864
No 246
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.58 E-value=0.00023 Score=64.39 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~ 80 (272)
..++|.|||.|.+|.++|+.|.+.|+ +|+++ |+++.........+-....+.....+++|++|.+.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~----~V~g~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV----YVIGV-DKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC----EEEEE-eCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCC
Confidence 45789999999999999999999998 99999 987654332111100111233344467999998874
No 247
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.55 E-value=0.00027 Score=61.95 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=61.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--ceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--VKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
++||+|+|+ |..|..+.+.|.+.+| +..++... .+..+.-+.+.-.+ +.+.+...+.++++|+||+|+|.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~h-p~~~l~~l-~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~ 78 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNF-PVDKLRLL-ASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKK 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-CcceEEEE-EccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHH
Confidence 468999987 9999999999999887 43355555 44432222221112 2222212233578999999999888888
Q ss_pred HHHHhchhcCCCCEEEEEcCCC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+.+++. ..|..|||.++..
T Consensus 79 ~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 79 YAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred HHHHHH---hCCCEEEECCchh
Confidence 877654 3567889876543
No 248
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.54 E-value=0.0002 Score=64.86 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=58.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC--------CCCCCcE-EEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG--------VLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g--------~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil 77 (272)
+.+|||+||+|.+|+.+++.|.++. . ..+| .++ +|++++.+.....+...+.+.++++. +.|+|+.
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~l~~V~-~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGR--PIEIKKVA-VRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEE-eCChhhccCCCCcccceeCCHHHHhhCCCCCEEEE
Confidence 4579999999999999998876542 1 1133 466 88877654322234456677888875 4799999
Q ss_pred eeCccc-HHHHHHHhchhcCCCCEEEEE
Q 024121 78 SVKPQV-VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 78 ~v~~~~-~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+++.. ..+.+ ...+..|+-|++.
T Consensus 79 ~tg~~~~~~~~~---~~aL~~GkhVVta 103 (426)
T PRK06349 79 LMGGIEPARELI---LKALEAGKHVVTA 103 (426)
T ss_pred CCCCchHHHHHH---HHHHHCCCeEEEc
Confidence 986532 23333 2334567777753
No 249
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.54 E-value=0.00051 Score=59.36 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=61.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHH--cCceee---cC--chhhhccCCEEEEee-
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVL---SD--NNAVVEYSDVVVFSV- 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~--~g~~~~---~~--~~~~~~~aDivil~v- 79 (272)
|||+|||+ |++|++++..|...+. ..++.++ |++..+ +-+|.. ....+. .+ +.+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~--~~elvLi-Di~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL--VSELALY-DIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEE-ecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 69999999 9999999999988775 3488999 887111 112222 112332 22 246689999999986
Q ss_pred -C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 -K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 -~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| |.. ++++.+.+.++ .|+.+++..+++...
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv 122 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhh
Confidence 2 221 12333445555 577788888787654
No 250
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.53 E-value=0.00095 Score=61.37 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCc---------------hh------
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN---------------NA------ 67 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~---------------~~------ 67 (272)
..|+.|+|+|.+|..-+..+...|. +|+++ |+++++.+..++.|+... -+. .+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA----~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA----IVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 5689999999999998888888897 89999 999999988888887621 110 01
Q ss_pred -----hhccCCEEEEeeCc-c-cHHHH-HHHhchhcCCCCEEEEEc
Q 024121 68 -----VVEYSDVVVFSVKP-Q-VVKDV-AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 68 -----~~~~aDivil~v~~-~-~~~~v-~~~l~~~l~~~~~iis~~ 105 (272)
.++++|+||.|+.. . ....+ .++....++++.+|+++.
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 12469999999842 1 11222 244445567888888774
No 251
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.52 E-value=0.00079 Score=54.64 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=30.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...||.|||+|.+|+.++++|...|. .+++++ |++
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv---~~i~lv-D~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV---GTIVIV-DDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC---CeEEEe-cCC
Confidence 34689999999999999999999997 378888 776
No 252
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.52 E-value=0.0004 Score=60.49 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=63.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCH--HHHHHHH----H------cCceeecCchhhhccCCE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRDAFE----S------IGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~~l~----~------~g~~~~~~~~~~~~~aDi 74 (272)
.||+|||+ |++|+.++..|...+... ..++.++ |+++ ++++..+ . .+..+..+..+.+++||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~-Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLL-DIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEE-ecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCE
Confidence 38999999 999999999999877532 1148899 9886 4432111 1 123343455677999999
Q ss_pred EEEee--C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 75 VVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 75 vil~v--~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
||++- | |. . ++++..++.++-+|+.+++-.++++..
T Consensus 80 VVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 131 (323)
T cd00704 80 AILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT 131 (323)
T ss_pred EEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH
Confidence 99885 2 21 2 334445565553466677766665543
No 253
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.52 E-value=0.00067 Score=64.38 Aligned_cols=87 Identities=11% Similarity=0.226 Sum_probs=63.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cC--chh-----hhccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD--NNA-----VVEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~--~~~-----~~~~aDivil~v~~ 81 (272)
..+|-|+|+|++|+.+++.|.+.|+ ++++. |.|+++.+.+++.|..+. .| ..+ -++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV----KMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence 4679999999999999999999999 99999 999999999988776542 22 122 24589999999977
Q ss_pred ccHH-HHHHHhchhcCCCCEEE
Q 024121 82 QVVK-DVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 82 ~~~~-~v~~~l~~~l~~~~~ii 102 (272)
+... .++..++.+ .|+..++
T Consensus 475 ~~~n~~i~~~ar~~-~p~~~ii 495 (621)
T PRK03562 475 PQTSLQLVELVKEH-FPHLQII 495 (621)
T ss_pred HHHHHHHHHHHHHh-CCCCeEE
Confidence 6543 333444433 3443344
No 254
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.50 E-value=0.00087 Score=61.49 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecC------------------------
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------------------------ 64 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~------------------------ 64 (272)
..|+.|+|+|.+|...+..+...|. .|+++ ++++++.+.+++.|... .-+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA----~V~v~-d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 4689999999999999999988898 89999 99999887777666543 111
Q ss_pred --chhhhccCCEEEEee--CcccHHH-HHHHhchhcCCCCEEEEEcC
Q 024121 65 --NNAVVEYSDVVVFSV--KPQVVKD-VAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 65 --~~~~~~~aDivil~v--~~~~~~~-v~~~l~~~l~~~~~iis~~~ 106 (272)
..+.++++|+||.|+ |-..... +.++....+++|.+|||++.
T Consensus 239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 123467899999998 2111111 12333445678999998753
No 255
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.50 E-value=0.00046 Score=61.37 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=61.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-------ceeecCch-hhhccCCEEEEe
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-------VKVLSDNN-AVVEYSDVVVFS 78 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-------~~~~~~~~-~~~~~aDivil~ 78 (272)
.+.+||+|+|+ |..|..+.+.|.++.+ .+|..+ .++.+.-+.+.... .....+.+ +.++++|+||+|
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~---~el~~l-~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~A 111 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD---FEITVM-TADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCC 111 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC---CeEEEE-EChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEc
Confidence 35679999998 9999999998888732 288877 55433322222111 11011222 225789999999
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+|.....++...+ ..+..|||+++..
T Consensus 112 lp~~~s~~i~~~~----~~g~~VIDlSs~f 137 (381)
T PLN02968 112 LPHGTTQEIIKAL----PKDLKIVDLSADF 137 (381)
T ss_pred CCHHHHHHHHHHH----hCCCEEEEcCchh
Confidence 9998777777764 2567899887654
No 256
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.48 E-value=0.0008 Score=58.96 Aligned_cols=80 Identities=11% Similarity=0.237 Sum_probs=53.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHH----HHHH--cCcee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFES--IGVKV 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~----~l~~--~g~~~ 61 (272)
...+|.|||+|.+|+.++..|..+|+ ..++++ |++. .|++ .+.+ .++.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv---g~i~lv-D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI---GKLTIA-DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 34689999999999999999999997 377888 7763 1222 2222 22322
Q ss_pred --e------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 62 --L------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 62 --~------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
. .+..+.++++|+||.|+.....+-.+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 123456778899999986666655555544
No 257
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.47 E-value=0.00058 Score=60.21 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=58.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHH---c-----------CceeecCchhhhccC
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FES---I-----------GVKVLSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~---~-----------g~~~~~~~~~~~~~a 72 (272)
+++||+|+| +|.+|+.+.+.|.+... .++... .++++...+ +.. . ...+.....+.+.++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~---~el~~~-~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW---FEVTAL-AASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDV 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC---ceEEEE-EcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCC
Confidence 468999998 79999999999887543 266655 444433211 110 0 112222223445789
Q ss_pred CEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 73 Divil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
|+||.|+|.....++.+.+. ..+..+|+.++.
T Consensus 78 DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~~ 109 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFA---KAGKPVFSNASA 109 (349)
T ss_pred CEEEEeCChhHHHHHHHHHH---HCCCEEEECCch
Confidence 99999999987777766553 356778877653
No 258
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00044 Score=59.10 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc-cc
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QV 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~-~~ 83 (272)
+..-.+++|+||+|++|+-++.++..-|. .+..| |. .+ .+.+...|++.. +.+|++..||+|-+=+|- ..
T Consensus 142 ~el~GKTLgvlG~GrIGseVA~r~k~~gm----~vI~~-dpi~~--~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~ 213 (406)
T KOG0068|consen 142 WELRGKTLGVLGLGRIGSEVAVRAKAMGM----HVIGY-DPITP--MALAEAFGVQLV-SLEEILPKADFITLHVPLTPS 213 (406)
T ss_pred eEEeccEEEEeecccchHHHHHHHHhcCc----eEEee-cCCCc--hHHHHhccceee-eHHHHHhhcCEEEEccCCCcc
Confidence 44455899999999999999999998887 77777 44 33 234555788874 678999999999887773 24
Q ss_pred HHHHHH-HhchhcCCCCEEEEEcCCC--CHHHHHHHhC
Q 024121 84 VKDVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (272)
Q Consensus 84 ~~~v~~-~l~~~l~~~~~iis~~~~~--~~~~l~~~~~ 118 (272)
.+.++. +-....++|..||+++-|- +...+-+.+.
T Consensus 214 T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 214 TEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred hhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHh
Confidence 444442 3334468899999887543 3344444443
No 259
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.46 E-value=0.00077 Score=57.89 Aligned_cols=96 Identities=22% Similarity=0.347 Sum_probs=61.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCceeec-CchhhhccCCEEEEee
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVLS-DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~~~-~~~~~~~~aDivil~v 79 (272)
+||+|||+|++|++++..|...+. ..++.++ |+++++++ +|.. ....+.. ...+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~--~~el~Li-Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL--GSELVLI-DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc--cceEEEE-EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 689999999999999999977765 2389999 99855432 2221 1233333 2245589999999996
Q ss_pred --C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 --K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 --~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| |. . ++++..++..+ .++.+++-.++++..
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPvD~ 123 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPVDI 123 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcHHH
Confidence 3 32 1 12233344454 356677666676554
No 260
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00059 Score=57.97 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc-H
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~-~ 84 (272)
....+++.|||.|. +|.+++..|.+.|. .|+++ ++.. .+..+.+++||+||.+++... +
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i 215 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA----SVTIL-HSRS--------------KDMASYLKDADVIVSAVGKPGLV 215 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHHhhCCEEEECCCCCccc
Confidence 45678999999988 99999999999988 99999 6643 244567899999999996433 2
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.. ..++++.+|||+.
T Consensus 216 ~~------~~vk~gavVIDvG 230 (286)
T PRK14175 216 TK------DVVKEGAVIIDVG 230 (286)
T ss_pred CH------HHcCCCcEEEEcC
Confidence 21 2357888999873
No 261
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00049 Score=59.29 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc---eee-cCchhh-hccCCEEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV---KVL-SDNNAV-VEYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~---~~~-~~~~~~-~~~aDivil 77 (272)
+++||+|+|. |--|.-+.+.|..+..+ ++..+ ..+..+=+.+.+ .|. ... .++++. .++||+||+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v---e~~~~-ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDV---ELILI-SSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCe---EEEEe-echhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 4689999987 99999999988877542 55555 333212122222 111 111 122332 446999999
Q ss_pred eeCcccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 78 ~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|+|+..-.+++.++. .++..|||+++..-.
T Consensus 77 alPhg~s~~~v~~l~---~~g~~VIDLSadfR~ 106 (349)
T COG0002 77 ALPHGVSAELVPELL---EAGCKVIDLSADFRL 106 (349)
T ss_pred ecCchhHHHHHHHHH---hCCCeEEECCccccc
Confidence 999999888887765 356679998776543
No 262
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.43 E-value=0.0028 Score=57.22 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=51.1
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHH-------H-cC----ceeecCchhhhccCCEEE
Q 024121 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFE-------S-IG----VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 11 ~~IgiIG~G~m-G~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~-------~-~g----~~~~~~~~~~~~~aDivi 76 (272)
|||+|||.|.- .--+...|++.. -++..+|.++ |.++++.+... + .| +..+.|..+++++||+||
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi 79 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLY-DIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVI 79 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEE-cCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 69999999883 334566666554 2456789999 99998765422 1 23 345778899999999999
Q ss_pred EeeCc
Q 024121 77 FSVKP 81 (272)
Q Consensus 77 l~v~~ 81 (272)
..+..
T Consensus 80 ~~irv 84 (425)
T cd05197 80 NQFRV 84 (425)
T ss_pred Eeeec
Confidence 99843
No 263
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.42 E-value=0.00073 Score=58.21 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=60.8
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH------cCceeecCchhhhccCCEEEEee--C--
Q 024121 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IGVKVLSDNNAVVEYSDVVVFSV--K-- 80 (272)
Q Consensus 15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l----~~------~g~~~~~~~~~~~~~aDivil~v--~-- 80 (272)
|||+|++|++++..|...+.. .++.++ |++.++++.. .. ..+.+..+..+.+++||+|+++. |
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA--DEIVLI-DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC--CEEEEE-eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCC
Confidence 689999999999999888763 479999 9987654322 22 12344444556789999999986 2
Q ss_pred ccc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 81 PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 81 ~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|.. ++++.+.+..+ .|+.+++..+++..
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 117 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVD 117 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHH
Confidence 211 33444555555 57777776766543
No 264
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.41 E-value=0.00074 Score=59.27 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEe-CCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
..+||+|+|+ |..|.-+.+.|.+.+| +..++.... .|+..+.-......+.+.....+.+.++|+||+|+|.....+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h-P~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF-PYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC-CcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHH
Confidence 4579999987 9999999999988777 444554331 333222111111112222222344678999999999998888
Q ss_pred HHHHhchhcCCCCEEEEEcCCC
Q 024121 87 VAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~~~~ 108 (272)
+..++. ..|..|||.++..
T Consensus 85 ~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 85 FGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred HHHHHH---hCCCEEEECCchh
Confidence 777653 3678899986643
No 265
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.41 E-value=0.0032 Score=57.02 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=49.8
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeecCchhhhccCCEEE
Q 024121 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 11 ~~IgiIG~G~m-G~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDivi 76 (272)
|||+|||.|.. +-.+...|.+.. -++..+|+++ |.++++.+...+ .| +..+.|..+++++||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLY-DIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF 79 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence 79999999885 223455565542 2455689999 999987654322 23 445778899999999999
Q ss_pred EeeCc
Q 024121 77 FSVKP 81 (272)
Q Consensus 77 l~v~~ 81 (272)
.....
T Consensus 80 ~~irv 84 (437)
T cd05298 80 AQIRV 84 (437)
T ss_pred EEeee
Confidence 99843
No 266
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.40 E-value=0.00098 Score=52.74 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
||.|||+|.+|+.++..|.+.|. .+++++ |.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lv-D~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLV-DFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCE
Confidence 68999999999999999999997 258888 7654
No 267
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.35 E-value=0.00066 Score=60.75 Aligned_cols=85 Identities=21% Similarity=0.279 Sum_probs=56.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----Cceee----cC---chhhhccCCEEEEeeCc
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVL----SD---NNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~----~~---~~~~~~~aDivil~v~~ 81 (272)
|.|+|+|.+|+.+++.|.+.+- ..+|++. +|+.++++++.+. .+... .+ ..++++++|+||-|+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va-~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVA-DRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEE-ESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEE-ECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 7899999999999999998763 1278899 9999998888651 22211 12 34568899999999988
Q ss_pred ccHHHHHHHhchhcCCCCEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis 103 (272)
..-..++.... ..+.-.||
T Consensus 78 ~~~~~v~~~~i---~~g~~yvD 96 (386)
T PF03435_consen 78 FFGEPVARACI---EAGVHYVD 96 (386)
T ss_dssp GGHHHHHHHHH---HHT-EEEE
T ss_pred chhHHHHHHHH---HhCCCeec
Confidence 86555554322 23445665
No 268
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.34 E-value=0.00055 Score=59.76 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=62.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeecCchhh-hccCCEEEEeeCcccH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVV 84 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~-~~~aDivil~v~~~~~ 84 (272)
++.+||+|||+ |..|.-+.+.|.+..| +..++.....+ +..+.-.+......+. +.++. ..++|++|+|+|....
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~h-P~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s 79 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQF-PVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS 79 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCC-CceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHH
Confidence 46789999998 9999999999988655 44566655222 2111111111122332 33332 2689999999999877
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
.++..++. ..|..|||.++..
T Consensus 80 ~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 80 AAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred HHHHHHHH---HCCCEEEECChHh
Confidence 77777654 3578899886543
No 269
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.002 Score=55.59 Aligned_cols=139 Identities=12% Similarity=0.223 Sum_probs=79.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEe-CCCHHHH-HHHHHcCceeec--CchhhhccCCEEEEeeCcccH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRR-DAFESIGVKVLS--DNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~-~r~~~~~-~~l~~~g~~~~~--~~~~~~~~aDivil~v~~~~~ 84 (272)
++||||+|+ |..|+.|.+.|.+..+ +-..+.++. .|+..+. -.+....+.+-. ......+++|++|.|.+.+.-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-CcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH
Confidence 478999976 9999999999998643 333344441 4443322 222222222222 122345689999999988877
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccC-chhhh----cCCceEEEeCCCCC-HHHHHHHHHHh
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPN-TPSAV----GEAATVMSLGGTAT-EEDGELIGKLF 158 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~-~~~~~----~~g~~~~~~~~~~~-~~~~~~v~~ll 158 (272)
+++.+++. ..|.+|||.++.. +.-++.+++ .|. .|... ..| .++ .+++++ ....-.+.+++
T Consensus 80 ~~~~p~~~---~~G~~VIdnsSa~------Rm~~DVPLV--VPeVN~~~l~~~~~rg-~Ii-anpNCst~~l~~aL~PL~ 146 (334)
T COG0136 80 KEVEPKAA---EAGCVVIDNSSAF------RMDPDVPLV--VPEVNPEHLIDYQKRG-FII-ANPNCSTIQLVLALKPLH 146 (334)
T ss_pred HHHHHHHH---HcCCEEEeCCccc------ccCCCCCEe--cCCcCHHHHHhhhhCC-CEE-ECCChHHHHHHHHHHHHH
Confidence 88877765 4678899875543 122233433 221 12211 123 233 344333 34556788888
Q ss_pred hhcC
Q 024121 159 GSVG 162 (272)
Q Consensus 159 ~~~G 162 (272)
+..+
T Consensus 147 ~~~~ 150 (334)
T COG0136 147 DAFG 150 (334)
T ss_pred hhcC
Confidence 8877
No 270
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.31 E-value=0.0013 Score=57.09 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=47.7
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC------------------ceeecCchhhhccCC
Q 024121 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG------------------VKVLSDNNAVVEYSD 73 (272)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g------------------~~~~~~~~~~~~~aD 73 (272)
|||+|+|.||...++.+.+... -+|...++.+++....+.. .| +.+..+++++..++|
T Consensus 1 VaInG~GrIGr~varav~~~~d---~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDD---MKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCC---cEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 6899999999999999875421 1665544877775544443 22 333456788888999
Q ss_pred EEEEeeCcc
Q 024121 74 VVVFSVKPQ 82 (272)
Q Consensus 74 ivil~v~~~ 82 (272)
+|+.|+|..
T Consensus 78 iVve~Tp~~ 86 (333)
T TIGR01546 78 IVVDATPGG 86 (333)
T ss_pred EEEECCCCC
Confidence 999999754
No 271
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.29 E-value=0.00084 Score=57.92 Aligned_cols=83 Identities=10% Similarity=0.153 Sum_probs=57.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
+++||+|||+ |..|.-+.+.|.++.++ ++.....+... .. .+.++...++|++|+|+|.....++
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~---~l~~~~s~~~~--------~~---~~~~~~~~~~DvvFlalp~~~s~~~ 66 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDI---ELLSIPEAKRK--------DA---AARRELLNAADVAILCLPDDAAREA 66 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCe---EEEEEecCCCC--------cc---cCchhhhcCCCEEEECCCHHHHHHH
Confidence 3579999996 99999999988887542 44333122211 11 2334556789999999999988888
Q ss_pred HHHhchhcCCCCEEEEEcCCC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~ 108 (272)
..++. ..+..|||.++..
T Consensus 67 ~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 67 VALID---NPATRVIDASTAH 84 (313)
T ss_pred HHHHH---hCCCEEEECChhh
Confidence 77764 3577899886543
No 272
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.28 E-value=0.001 Score=57.84 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEe
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~ 78 (272)
...++|.|||+|.||...+++|.+.|. .+|++. ||+.+.. .+..... ...+...++|+||.|
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~---~~i~v~-nRt~~~~-~~~~~~~----~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGY---SRITFC-SRQQLTL-PYRTVVR----EELSFQDPYDVIFFG 233 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCC---CEEEEE-cCCcccc-chhhhhh----hhhhcccCCCEEEEc
Confidence 467899999999999999999999996 279999 9997531 1111000 111334689999987
No 273
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.27 E-value=0.0011 Score=57.92 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=60.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v 87 (272)
.+||||||+ |..|.-|.+.|.++..++..++.....+ +..+.-.+....+.+.....+...+.|++|+|+|.....++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF 84 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHHH
Confidence 379999998 9999999999886444343346544122 22221111111223322222345789999999999888887
Q ss_pred HHHhchhcCCCCEEEEEcCCC
Q 024121 88 AMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~~~~ 108 (272)
...+. ..|..|||.++..
T Consensus 85 ~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 85 VNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred HHHHH---HCCCEEEECchhh
Confidence 77653 3678899886543
No 274
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.001 Score=56.46 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|.+ |.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVt~~-hs~t--------------~~l~~~~~~ADIVV~avG~~~~- 214 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGA----TVTIC-HSKT--------------RDLAAHTRQADIVVAAVGKRNV- 214 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-cCCC--------------CCHHHHhhhCCEEEEcCCCcCc-
Confidence 446789999999988 9999999999988 99988 6432 2455778999999999974332
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+.. ..++++.++|++
T Consensus 215 --i~~--~~ik~gavVIDV 229 (285)
T PRK14189 215 --LTA--DMVKPGATVIDV 229 (285)
T ss_pred --cCH--HHcCCCCEEEEc
Confidence 221 446899999986
No 275
>PLN00106 malate dehydrogenase
Probab=97.26 E-value=0.0019 Score=56.11 Aligned_cols=95 Identities=11% Similarity=0.163 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH--cCceee--cCc---hhhhccCCEEEEee-
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL--SDN---NAVVEYSDVVVFSV- 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~--~g~~~~--~~~---~~~~~~aDivil~v- 79 (272)
.||+|||+ |++|+.++..|...+.. .++.++ |+++... .++.. ....+. .+. .+.++++|+||++-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~--~el~L~-Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLV--SELHLY-DIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC--CEEEEE-ecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 69999999 99999999999877652 379999 9876211 12222 111221 122 57789999999986
Q ss_pred -Cc--c-cHHH-----------HHHHhchhcCCCCEEEEEcCCCC
Q 024121 80 -KP--Q-VVKD-----------VAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 80 -~~--~-~~~~-----------v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|. . .-.+ +.+.+..+ .|+.+++-.+++..
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD 139 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 22 1 2222 23344444 47778887777775
No 276
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.25 E-value=0.0017 Score=56.63 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=60.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCC--CC-cEEEEeCCCHHH--HHH----HHH------cCceeecCchhhhccCCEE
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLP--PD-RICTAVHSNLKR--RDA----FES------IGVKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~--~~-~V~v~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~aDiv 75 (272)
||+|||+ |++|+.++..|...+... .. ++.++ |+++.. ++. +.. .++....+..+.+++||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~Li-D~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLL-DIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEE-ecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEE
Confidence 6999999 999999999999877632 21 58899 986432 211 111 1122222435678999999
Q ss_pred EEee--Cc--cc------------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 76 VFSV--KP--QV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 76 il~v--~~--~~------------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
|++- |. .. ++++.+++.++-+|+.+++-.++++..
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv 130 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT 130 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 9985 32 22 233444555553466677766666544
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.25 E-value=0.0022 Score=55.66 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-c-Cchhh---h-ccCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-DNNAV---V-EYSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~-~~~~~---~-~~aDivil~v~~~~ 83 (272)
..+|+|+|+|-+|..-.+.....|. +|+++ +|++++.+.+++.|+... . +..+. + +.+|+|+.++++..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga----~Via~-~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~ 241 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGA----EVIAI-TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPAT 241 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhh
Confidence 4689999999999866665556887 99999 999999998888876432 1 11222 2 23999999999556
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
+...+..+ +++..++-.
T Consensus 242 ~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 242 LEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred HHHHHHHH----hcCCEEEEE
Confidence 66665544 455555533
No 278
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.25 E-value=0.0013 Score=56.90 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=61.7
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHH--cCceeec---C--chhhhccCCEEEEee--
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVLS---D--NNAVVEYSDVVVFSV-- 79 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~--~g~~~~~---~--~~~~~~~aDivil~v-- 79 (272)
||+|||+ |++|++++..|...++. .++.++ |+++.. +-++.. ....+.. + ..+.+++||+||++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~--~elvL~-Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV--SELSLY-DIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC--cEEEEe-cCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 7999999 99999999999887753 478999 987621 112222 1123321 2 256789999999986
Q ss_pred C--cc-c-----------HHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 80 K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 80 ~--~~-~-----------~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
| +. . ++++.+.+..+ .|+.+++..+++...
T Consensus 78 ~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv 121 (312)
T TIGR01772 78 PRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNS 121 (312)
T ss_pred CCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhh
Confidence 2 11 1 12333445555 578888888887753
No 279
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.22 E-value=0.0013 Score=54.30 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=50.1
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCceee-------cCchhhhccCCEEEEeeC
Q 024121 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v~ 80 (272)
|.|+|. |.+|+.++..|.+.++ +|.+. .|++. ..+.+...|+.+. .+..++++++|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~----~V~~l-~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF----SVRAL-VRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG----CEEEE-ESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCC----CcEEE-EeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 688986 9999999999999998 99998 78753 4566777787643 123456889999999998
No 280
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0011 Score=56.18 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=68.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce--ee----cCchhhhccCCEEEEee--C
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK--VL----SDNNAVVEYSDVVVFSV--K 80 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~--~~----~~~~~~~~~aDivil~v--~ 80 (272)
.-||.|||.|-.|.-=++-...-|- +|++. ++|.++++.+.. ++.+ .. .+.++.+.++|+||=+| |
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA----~Vtil-d~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA----DVTIL-DLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC----eeEEE-ecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 3579999999999988887777777 99999 999999988877 4443 22 23467788999999887 4
Q ss_pred cccHHHH-HHHhchhcCCCCEEEEEc
Q 024121 81 PQVVKDV-AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 81 ~~~~~~v-~~~l~~~l~~~~~iis~~ 105 (272)
-.....+ .+++..+++|+.+|||..
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 4443333 345566678999999864
No 281
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.0016 Score=55.31 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=58.1
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-ccc
Q 024121 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~ 83 (272)
.....+++.|||-|. .|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvi~avG~p~~ 215 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGC----TVTVC-HRFT--------------KNLRHHVRNADLLVVAVGKPGF 215 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCC----eEEEE-ECCC--------------CCHHHHHhhCCEEEEcCCCccc
Confidence 345678999999998 99999999999888 99999 6542 245677899999999993 444
Q ss_pred HHHHHHHhchhcCCCCEEEEE
Q 024121 84 VKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~ 104 (272)
+.. ..++++.+||++
T Consensus 216 v~~------~~vk~gavVIDv 230 (285)
T PRK10792 216 IPG------EWIKPGAIVIDV 230 (285)
T ss_pred ccH------HHcCCCcEEEEc
Confidence 332 346799999986
No 282
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.21 E-value=0.0012 Score=57.33 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=50.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee----c---CchhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDivil~v~ 80 (272)
|||.|+|. |.+|+.+++.|++.|| +|.+. .|++++...+...++++. . +..++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~----~V~~l-~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY----QVRCL-VRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-EcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 68999984 9999999999999999 99999 898876655554565432 1 23456788999998763
No 283
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.20 E-value=0.023 Score=50.07 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=96.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c-C-ce-------------------eecC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-G-VK-------------------VLSD 64 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~-g-~~-------------------~~~~ 64 (272)
|.+|-|+|+|..+--+|..+.+.+. ..|.+. +|...+.+.+.+ . + +. +..+
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~---~~vGi~-~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~ 76 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGN---CRVGIV-GRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQD 76 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccC---ceeeee-cCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcC
Confidence 3579999999999999999887654 268888 887666554432 1 1 00 1235
Q ss_pred chhhhccCCEEEEeeCcccHHHHHHHhchh-cCCCCEEEEEcCCCCHHHH-HHHhC----CCCEEEEcc----------C
Q 024121 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPL-LSRKKLLVSVAAGVKLKDL-QEWTG----HSRFIRVMP----------N 128 (272)
Q Consensus 65 ~~~~~~~aDivil~v~~~~~~~v~~~l~~~-l~~~~~iis~~~~~~~~~l-~~~~~----~~~~~~~~p----------~ 128 (272)
.+++..+=|.+|+|||.++..+|+++|.+. ++.=+.+|=++..+....+ +..+. +..++.+.. .
T Consensus 77 ~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 77 YEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred HHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 567777899999999999999999987542 4444455556666665433 33332 334444321 1
Q ss_pred chhhh---cCCceEEEeCCCCCHHHHHHHHHHhhhcCC-eEEcC
Q 024121 129 TPSAV---GEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRAD 168 (272)
Q Consensus 129 ~~~~~---~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~-~~~~~ 168 (272)
.|..+ +-..-+.....+.+....+++..+++.+|- ...++
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 11111 000112222334566678999999999995 45554
No 284
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.19 E-value=0.002 Score=56.69 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=54.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--------CCCCCCcEE-EEeCC----------CHHHHHHHHH-cCc-e------ee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKS--------GVLPPDRIC-TAVHS----------NLKRRDAFES-IGV-K------VL 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~--------g~~~~~~V~-v~~~r----------~~~~~~~l~~-~g~-~------~~ 62 (272)
.+||+|+|+|.||+.+++.|.+. |. ..+|. ++ ++ +.+++..+.+ .+. . ..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~--~~~vvai~-d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 78 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGL--DLKVVAIA-DSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGE 78 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEE-eCCCcccCcCCCCHHHHHHHHhccCCcccCcccccc
Confidence 46899999999999999998765 21 01443 45 64 3334433333 221 1 12
Q ss_pred cCchhhhc--cCCEEEEeeCcccH--HHHHHHhchhcCCCCEEEEE
Q 024121 63 SDNNAVVE--YSDVVVFSVKPQVV--KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 63 ~~~~~~~~--~aDivil~v~~~~~--~~v~~~l~~~l~~~~~iis~ 104 (272)
.+..+++. +.|+|+.|+|+... +...+-+...+..|+.||+.
T Consensus 79 ~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred CCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 35666664 68999999986432 11122223345567777753
No 285
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.18 E-value=0.00054 Score=53.72 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=53.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCcE-EEEeCCCHHHHHHHHHcCceee--cCchhhhc--cCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVL--SDNNAVVE--YSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~--~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~--~aDivil~v~~ 81 (272)
++.++.+||+|++|.+++..-. ++|+ ++ .++ |.++++.-.-. .++.+. ++.+..++ +.|+.++|||.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~----~iv~~F-Dv~~~~VG~~~-~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGM----KIVAAF-DVDPDKVGTKI-GDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCc----eEEEEe-cCCHHHhCccc-CCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 3457999999999999986533 4555 55 467 98887542211 233332 33444455 78999999999
Q ss_pred ccHHHHHHHhch
Q 024121 82 QVVKDVAMQIRP 93 (272)
Q Consensus 82 ~~~~~v~~~l~~ 93 (272)
....++.+.|..
T Consensus 157 ~~AQ~vad~Lv~ 168 (211)
T COG2344 157 EHAQEVADRLVK 168 (211)
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
No 286
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.17 E-value=0.0013 Score=57.38 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=62.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cC-ceeecCchhhhccCCEEEEeeCc-c
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG-VKVLSDNNAVVEYSDVVVFSVKP-Q 82 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~aDivil~v~~-~ 82 (272)
...++|.|+|+ |.||+.+++.|.+. |. .+++++ +|+.++++.+.+ .+ ..+ .+..+.+.++|+|+.++.. .
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv---~~lilv-~R~~~rl~~La~el~~~~i-~~l~~~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGV---AELLLV-ARQQERLQELQAELGGGKI-LSLEEALPEADIVVWVASMPK 227 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCC---CEEEEE-cCCHHHHHHHHHHhccccH-HhHHHHHccCCEEEECCcCCc
Confidence 45689999998 89999999999854 42 289999 999888887765 22 222 2456778899999998843 2
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcC
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+ ++.. ..++++.+++|..-
T Consensus 228 ~~--~I~~--~~l~~~~~viDiAv 247 (340)
T PRK14982 228 GV--EIDP--ETLKKPCLMIDGGY 247 (340)
T ss_pred CC--cCCH--HHhCCCeEEEEecC
Confidence 21 0111 12356778888743
No 287
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0017 Score=55.26 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=63.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---Cc--eeecC-chhhhccCCEEEEeeCc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GV--KVLSD-NNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---g~--~~~~~-~~~~~~~aDivil~v~~ 81 (272)
..+++.|+|+|-.+.+++..|++.|. .+|+++ ||+.+++++|++ . +. ..... ..+...++|+||=|+|.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~---~~i~V~-NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA---KRITVV-NRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 45789999999999999999999995 289999 999999999887 2 21 11111 11212269999999985
Q ss_pred ccHHH----HHHHhchhcCCCCEEEEEc
Q 024121 82 QVVKD----VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 82 ~~~~~----v~~~l~~~l~~~~~iis~~ 105 (272)
.-... .+. ...++++.++.++.
T Consensus 201 Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 201 GMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred CCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 43211 222 23466777877764
No 288
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.17 E-value=0.0029 Score=47.73 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=28.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
..||.|+|+|.+|+.++.+|...|. .+++++ |.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lv-D~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV---GKITLV-DD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT---SEEEEE-ES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC---Cceeec-CC
Confidence 4689999999999999999999997 367777 54
No 289
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.16 E-value=0.0027 Score=54.21 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||.|. .|.+++..|.+.|. .|+++ +|... +..+.++++|+||.|++...
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga----tVtv~-~~~t~--------------~L~~~~~~aDIvI~AtG~~~-- 214 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA----TVTIC-HSRTQ--------------NLPELVKQADIIVGAVGKPE-- 214 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC----EEEEE-eCCch--------------hHHHHhccCCEEEEccCCCC--
Confidence 45668999999998 99999999999988 99999 77322 23445689999999994222
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
.+.. ..++++.+++|+
T Consensus 215 -~v~~--~~lk~gavViDv 230 (283)
T PRK14192 215 -LIKK--DWIKQGAVVVDA 230 (283)
T ss_pred -cCCH--HHcCCCCEEEEE
Confidence 1211 236788888886
No 290
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.15 E-value=0.0024 Score=55.69 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHHH----HHH------cCceeecCchhhhccCCE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRDA----FES------IGVKVLSDNNAVVEYSDV 74 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~aDi 74 (272)
.||+|+|+ |.+|+.++..|...+... ..+|.++ |+++. +++. +.. ..+....+..+.+++||+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~-D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL-DIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE-EcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 58999999 999999999999866421 1379999 88652 1211 110 012233444577899999
Q ss_pred EEEee--C--ccc------------HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 75 VVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 75 vil~v--~--~~~------------~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
||++- | +.. ++++...+..+..++.+++-.++++.
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN 132 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH
Confidence 99885 2 111 12333455555445666666666544
No 291
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.15 E-value=0.0041 Score=50.87 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=30.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...+|.|||+|.+|+.++..|...|. .+++++ |.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv---g~i~lv-D~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV---GNLKLV-DFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 34689999999999999999999997 368888 766
No 292
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.15 E-value=0.0023 Score=45.93 Aligned_cols=85 Identities=12% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-cCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
.+.++|.|||.|.+|..=++.|++.|. +|+++ .+..+..+ ..++.. ....+.++++|+||.|+.+..+.+
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA----~v~vi-s~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA----KVTVI-SPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB----EEEEE-ESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHH
Confidence 356899999999999999999999998 99999 77641111 222221 222355788999999998877665
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
-+.+... ...++++.
T Consensus 76 ~i~~~a~---~~~i~vn~ 90 (103)
T PF13241_consen 76 AIYADAR---ARGILVNV 90 (103)
T ss_dssp HHHHHHH---HTTSEEEE
T ss_pred HHHHHHh---hCCEEEEE
Confidence 5544332 22355554
No 293
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.12 E-value=0.0027 Score=52.43 Aligned_cols=89 Identities=17% Similarity=0.283 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCC----------CHHHHHHHHH-cC-------ceeecCchh
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAFES-IG-------VKVLSDNNA 67 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~ 67 (272)
.+..+||+|.|+|++|+.+++.|.+.|. +|+ +. |. +.+.+.++++ .| .... +..+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~----~vv~v~-D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~ 101 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGA----KVVAVS-DSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEE 101 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCcc
Confidence 3467899999999999999999999998 777 55 76 6666655544 22 1111 2233
Q ss_pred hh-ccCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcC
Q 024121 68 VV-EYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 68 ~~-~~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+. .+||+++-|.+.+.+ .+.++++. -++|+...+
T Consensus 102 i~~~~~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN 137 (227)
T cd01076 102 LLELDCDILIPAALENQITADNADRIK-----AKIIVEAAN 137 (227)
T ss_pred ceeecccEEEecCccCccCHHHHhhce-----eeEEEeCCC
Confidence 32 379999999876654 34444442 346665444
No 294
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.12 E-value=0.0044 Score=47.25 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
||.|||+|.+|+.++++|...|+ .+++++ |.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~iv-D~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV---GKITLI-DFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEE-cCC
Confidence 58999999999999999999997 368888 765
No 295
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=97.09 E-value=0.012 Score=44.32 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCcccchhHHH-ch-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024121 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITG-LS-GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS 223 (272)
Q Consensus 147 ~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~ 223 (272)
+++..+.++.+++.+|.. +.+++++...+.+ .+ ..+|...+...-.+...+.|++.+++.+++.+.+.++.+.+.+.
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~~~~ 88 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENILQL 88 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999964 7787776544433 33 56666666655566678999999999999999999999888753
Q ss_pred CCCHHHHHHhcCCCc-chHHHHHHHHHh
Q 024121 224 GKHPGQLKDDVASPG-GTTIAGIHELEK 250 (272)
Q Consensus 224 ~~~~~~l~~~~~~~~-g~t~~~l~~l~~ 250 (272)
+ ....+..-+.-.. ++....++.|++
T Consensus 89 g-~~~alTGP~~RgD~~Tv~kHl~~L~~ 115 (132)
T PF10728_consen 89 G-PADALTGPAARGDIGTVAKHLAALDD 115 (132)
T ss_dssp --HHHH--SCCHCTHHHHHHHHHHHCCC
T ss_pred C-chhccCCCcccCCHHHHHHHHHHHhc
Confidence 2 1233333332222 345566777665
No 296
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.08 E-value=0.011 Score=53.45 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=48.1
Q ss_pred CeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEEEEeCCC-HHHHHHHH-------H-cC----ceeecCchhhhccCCEE
Q 024121 11 FILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSN-LKRRDAFE-------S-IG----VKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~G~mG~-~la~~l~~~-g~~~~~~V~v~~~r~-~~~~~~l~-------~-~g----~~~~~~~~~~~~~aDiv 75 (272)
|||+|||.|..-+ .+...|++. .-++..+|.++ |.+ +++++... + .| +..+.|..+++++||+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfV 79 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLV-DIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFV 79 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEe-cCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 6999999998643 345555553 22355689999 999 77764321 1 23 34567889999999999
Q ss_pred EEee
Q 024121 76 VFSV 79 (272)
Q Consensus 76 il~v 79 (272)
|.+.
T Consensus 80 i~~~ 83 (419)
T cd05296 80 FTQI 83 (419)
T ss_pred EEEE
Confidence 9997
No 297
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.08 E-value=0.0059 Score=49.64 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeec-C-chhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLS-D-NNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~-~-~~~~~~~aDivil~v~~~~~ 84 (272)
+.++|.|||.|.+|..-++.|++.|. +|+++ +.+. +..+.+.+.| +.... + ..+.+.++|+||.|+.+..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga----~VtVv-sp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA----QLRVI-AEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 45799999999999999999999998 99999 7754 3445555543 43321 1 13447899999999877655
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..-+.... +...+.|++.
T Consensus 83 n~~i~~~a---~~~~ilvn~~ 100 (205)
T TIGR01470 83 NRRVAHAA---RARGVPVNVV 100 (205)
T ss_pred HHHHHHHH---HHcCCEEEEC
Confidence 44333222 2234566553
No 298
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.06 E-value=0.0025 Score=46.05 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH---HcCceeecCchhhhccCCEEEEeeCcccHHHH-HHHhchhcC
Q 024121 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---SIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLS 96 (272)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v-~~~l~~~l~ 96 (272)
-+-.+++.|.+.|. +|.+| |..-....... ..++...++..+.++++|.|+++++...+.++ .+.+...++
T Consensus 18 p~~~l~~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~ 92 (106)
T PF03720_consen 18 PALELIEELKERGA----EVSVY-DPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMR 92 (106)
T ss_dssp HHHHHHHHHHHTT-----EEEEE--TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSC
T ss_pred HHHHHHHHHHHCCC----EEEEE-CCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcC
Confidence 35568899999999 99999 88654433333 25788888888999999999999988877652 345555566
Q ss_pred CCCEEEEEcC
Q 024121 97 RKKLLVSVAA 106 (272)
Q Consensus 97 ~~~~iis~~~ 106 (272)
++.+|+++-+
T Consensus 93 ~~~~iiD~~~ 102 (106)
T PF03720_consen 93 KPPVIIDGRN 102 (106)
T ss_dssp SSEEEEESSS
T ss_pred CCCEEEECcc
Confidence 7788888644
No 299
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=97.05 E-value=0.0013 Score=57.68 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=58.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeecCchhhhccCCEEEEeeCcccHHHHH
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDivil~v~~~~~~~v~ 88 (272)
||+|||+ |..|..+.+.|.+.+| +..++.+. .+..+.-+.+.-.|. .+.+-..+.+.++|++|+|++.....++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p~~~l~~~-as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-PIDKLVLL-ASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-ChhhEEEE-eccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH
Confidence 6899995 9999999999999887 44455544 443322222221232 22211223457899999999998877777
Q ss_pred HHhchhcCCCCEEEEEcC
Q 024121 89 MQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~~~ 106 (272)
..+. ..|..|||.++
T Consensus 79 ~~~~---~~G~~VID~ss 93 (339)
T TIGR01296 79 PKAA---KCGAIVIDNTS 93 (339)
T ss_pred HHHH---HCCCEEEECCH
Confidence 6653 35668888755
No 300
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.01 E-value=0.0034 Score=57.56 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=52.8
Q ss_pred CCCCCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceee-cCchhhhccCCEEEEee
Q 024121 5 PIPAESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~aDivil~v 79 (272)
+...+.++|.|||.|..|.+ +|+.|.+.|+ +|+++ |.++. ..+++.+.|+.+. ....+.+.++|+||++-
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 2 PELRRIKRIHFVGIGGIGMSGLAEVLLNLGY----KVSGS-DLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCcCCCCEEEEEEEchhhHHHHHHHHHhCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 34456679999999999999 8999999999 99999 87542 3445666787664 22344567899998874
No 301
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.00 E-value=0.0033 Score=57.62 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~ 78 (272)
+.+||.|||.|..|.+.++.|.+.|+ +|+++ |+.+.....+.+.|+.......+-+.++|+||.+
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA----EVIAW-DDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-CCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 45789999999999999999999999 99999 9775544455556776533223335689998865
No 302
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.00 E-value=0.0043 Score=56.61 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCCCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc
Q 024121 8 AESFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
.+.++|+|||. |++|..+.++|.+.|| ..+|+.. |+.... -.|+.+..+..++-...|++++++|++.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf--~g~v~~V-np~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~~ 76 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGY--KGKIYPV-NPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAKY 76 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCC--CCcEEEE-CCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHHH
Confidence 34578999999 8999999999999998 1256666 554321 1577788888887778999999999999
Q ss_pred HHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
+.++++++... .-..+|| +++|++
T Consensus 77 ~~~~l~e~~~~-gv~~~vi-~s~gf~ 100 (447)
T TIGR02717 77 VPQVVEECGEK-GVKGAVV-ITAGFK 100 (447)
T ss_pred HHHHHHHHHhc-CCCEEEE-ECCCcc
Confidence 99999887653 2333433 455553
No 303
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.99 E-value=0.0036 Score=51.31 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----------HHHHHHHHc-Cceee-----cCchhhh-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----------KRRDAFESI-GVKVL-----SDNNAVV- 69 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----------~~~~~l~~~-g~~~~-----~~~~~~~- 69 (272)
.++.+||+|.|+|++|+.+++.|.+.|. ..|.+. |.+. +..+...+. ++... .+..++.
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~---~vV~vs-D~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG---KVLAVS-DPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG 95 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEE-cCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee
Confidence 4567899999999999999999999987 144566 7776 555544442 22211 1122332
Q ss_pred ccCCEEEEeeCcccHH-HHHHHhchhcCCCCEEEEEcC
Q 024121 70 EYSDVVVFSVKPQVVK-DVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 70 ~~aDivil~v~~~~~~-~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+||+++.|.+.+.+. +...++ .-++|+.-.+
T Consensus 96 ~~~DVlipaA~~~~i~~~~a~~l-----~a~~V~e~AN 128 (217)
T cd05211 96 LDVDIFAPCALGNVIDLENAKKL-----KAKVVAEGAN 128 (217)
T ss_pred ccccEEeeccccCccChhhHhhc-----CccEEEeCCC
Confidence 3899999998766543 333333 2456665544
No 304
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.99 E-value=0.0035 Score=57.71 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-HHcCceeec--CchhhhccCCEEEEe--eCcc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLS--DNNAVVEYSDVVVFS--VKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~aDivil~--v~~~ 82 (272)
..+||.|+|+|..|.++++.|.+.|+ +|+++ |++.....++ .+.|+.+.. +..+.+.++|+||.+ +|++
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC----DVVVA-DDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 45789999999999999999999999 99999 9877655443 336776643 233446789999887 3544
No 305
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0069 Score=50.39 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=66.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHH-----HHHHH---cCceeecCchhhhccCCEEEEe
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRR-----DAFES---IGVKVLSDNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~-----~~l~~---~g~~~~~~~~~~~~~aDivil~ 78 (272)
++|||+|.|+ |+||+.+.+.+.+...+ ++. .+ +|.+... -++.. .|+.+.++......++|++|=-
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~---~L~aa~-~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDF 76 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDL---ELVAAF-DRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDF 76 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCc---eEEEEE-ecCCccccccchhhhccccccCceeecchhhcccCCCEEEEC
Confidence 3689999999 99999999999876531 443 45 6665322 12221 4566766666777799999988
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
+.|....+.++-... .+..+|--+.|.+.+.+++
T Consensus 77 T~P~~~~~~l~~~~~---~~~~lVIGTTGf~~e~~~~ 110 (266)
T COG0289 77 TTPEATLENLEFALE---HGKPLVIGTTGFTEEQLEK 110 (266)
T ss_pred CCchhhHHHHHHHHH---cCCCeEEECCCCCHHHHHH
Confidence 877777666654432 2333443557888876654
No 306
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.95 E-value=0.002 Score=47.33 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=51.1
Q ss_pred cccHHHHHHHHHHHhCC----CCCCCcEE-EEeCCC--HHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccHHHH
Q 024121 17 GAGKMAESIAKGVAKSG----VLPPDRIC-TAVHSN--LKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 17 G~G~mG~~la~~l~~~g----~~~~~~V~-v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~~~v 87 (272)
|+|++|+.++..|.+.. + +|. ++ +|+ ..........+.....+.++++. +.|+||=|..++.+.+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~----~v~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDL----EVVGVA-DRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEE----EEEEEE-ESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCE----EEEEEE-ECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHH
Confidence 89999999999998763 4 554 55 887 11111111133455678888887 89999999888777766
Q ss_pred HHHhchhcCCCCEEEEEc
Q 024121 88 AMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 88 ~~~l~~~l~~~~~iis~~ 105 (272)
+.+. +..|.-||+.+
T Consensus 76 ~~~~---L~~G~~VVt~n 90 (117)
T PF03447_consen 76 YEKA---LERGKHVVTAN 90 (117)
T ss_dssp HHHH---HHTTCEEEES-
T ss_pred HHHH---HHCCCeEEEEC
Confidence 6554 45677777654
No 307
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.93 E-value=0.0076 Score=52.89 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=53.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHH----HHHHc--Ccee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFESI--GVKV 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~----~l~~~--g~~~ 61 (272)
...||.|||+|.+|+.++..|..+|. .+|+++ |++. .|++ .+.+. .+.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lv-D~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV---GKVTIV-DRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 34689999999999999999999997 378888 7652 1222 22221 2221
Q ss_pred --e------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 62 --L------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 62 --~------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
. .+..+.++++|+||.|+.....+..+.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 122456778999999987665555555543
No 308
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.93 E-value=0.0033 Score=53.97 Aligned_cols=70 Identities=24% Similarity=0.210 Sum_probs=48.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHH----c--Ccee--e--cC---chhhhccC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES----I--GVKV--L--SD---NNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~----~--g~~~--~--~~---~~~~~~~a 72 (272)
+.+++.|+|+|-+|.+++..|.+.|. .+|+++ +|++ ++++.+.+ . ++.+ . .+ ..+.++++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~---~~V~I~-~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA---KEITIF-NIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccC
Confidence 45789999999999999999999998 149999 9986 56655543 1 1111 1 11 12234567
Q ss_pred CEEEEeeCcc
Q 024121 73 DVVVFSVKPQ 82 (272)
Q Consensus 73 Divil~v~~~ 82 (272)
|+||-|+|..
T Consensus 201 DilINaTp~G 210 (289)
T PRK12548 201 DILVNATLVG 210 (289)
T ss_pred CEEEEeCCCC
Confidence 8888888754
No 309
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.91 E-value=0.0031 Score=55.64 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=58.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C--ceeec-CchhhhccCCEEEEeeCcccHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G--VKVLS-DNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g--~~~~~-~~~~~~~~aDivil~v~~~~~~ 85 (272)
++|+|||+ |..|.-|.+.++++..++..++..+ .... ...+.... | ..+.. ...+...++|++|+|+|.....
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~-ss~~-sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF-STSQ-AGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEe-cchh-hCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHH
Confidence 78999998 9999999986666555444457666 4321 11111111 1 22222 1123457899999999988888
Q ss_pred HHHHHhchhcCCC--CEEEEEcCC
Q 024121 86 DVAMQIRPLLSRK--KLLVSVAAG 107 (272)
Q Consensus 86 ~v~~~l~~~l~~~--~~iis~~~~ 107 (272)
++..++.. .| .+|||.++.
T Consensus 80 ~~~~~~~~---aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVYPKLRA---AGWQGYWIDAAST 100 (369)
T ss_pred HHHHHHHh---CCCCeEEEECChH
Confidence 88776643 45 468887653
No 310
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.89 E-value=0.0029 Score=49.17 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=50.1
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.+||-+ ..|.+++.-|.+.|. .|+++ +... .+.++.+++||+||.++. +..+
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a----tVt~~-h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i 93 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGA----TVTIC-HSKT--------------KNLQEITRRADIVVSAVGKPNLI 93 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-----EEEEE--TTS--------------SSHHHHHTTSSEEEE-SSSTT-B
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCC----eEEec-cCCC--------------CcccceeeeccEEeeeecccccc
Confidence 4567899999997 599999999999998 99988 6543 345667889999999995 4333
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..++++.++||+
T Consensus 94 ~~------~~ik~gavVIDv 107 (160)
T PF02882_consen 94 KA------DWIKPGAVVIDV 107 (160)
T ss_dssp -G------GGS-TTEEEEE-
T ss_pred cc------ccccCCcEEEec
Confidence 21 236899999986
No 311
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.88 E-value=0.0052 Score=52.20 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccH
Q 024121 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~ 84 (272)
....+++.|||-++ .|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++ .|..+
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvv~AvG~p~~i 221 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNA----TVSVC-HVFT--------------DDLKKYTLDADILVVATGVKHLI 221 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCC----EEEEE-eccC--------------CCHHHHHhhCCEEEEccCCcccc
Confidence 45678999999998 99999999999888 99999 6422 24566789999999988 45543
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..++++.+||++
T Consensus 222 ~~------~~vk~gavVIDv 235 (287)
T PRK14176 222 KA------DMVKEGAVIFDV 235 (287)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236789999987
No 312
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.88 E-value=0.0063 Score=49.15 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..||.|||+|.+|+.++++|..+|. .+++++ |.+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV---g~i~lv-D~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI---GSLTIL-DDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 4689999999999999999999997 367777 544
No 313
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.86 E-value=0.0046 Score=54.37 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=55.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------C-------ceeecCchhhhccCCEE
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------G-------VKVLSDNNAVVEYSDVV 75 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------g-------~~~~~~~~~~~~~aDiv 75 (272)
+||+|+|+ |.||..+++.|.++..+ ++....++..+.-+.+.. . + ..+.....+...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~---~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF---ELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc---eEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEE
Confidence 58999996 99999999988876531 554331433322111111 0 1 11111123345789999
Q ss_pred EEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 76 il~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
|+|+|.....++...+. ..|..+|+.++.
T Consensus 78 f~a~p~~~s~~~~~~~~---~~G~~VIDlsg~ 106 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLA---EAGKPVFSNASN 106 (341)
T ss_pred EEeCCHHHHHHHHHHHH---HCCCEEEECChh
Confidence 99999987777765553 356678876554
No 314
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.84 E-value=0.0055 Score=56.60 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeec--CchhhhccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~aDivil~v 79 (272)
.++|.|+|+|..|.+.++.|...|+ +|+++ |++++..+.+.+.|+.... ...+.+.++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA----RPTVC-DDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 4789999999999999999999999 99999 9887766666667876532 2334567899999885
No 315
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.84 E-value=0.0064 Score=55.51 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=50.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHH----HHHHHcCceee--cCchhhhccCCEEEEee
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRR----DAFESIGVKVL--SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~aDivil~v 79 (272)
++.+++.|+|.|.+|.++|..|.+.|+ +|+++ +++. +.. +++.+.|+.+. ....+...++|+||.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA----KVILT-DEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECC
Confidence 356899999999999999999999999 99999 8874 333 33444566542 22234456799999987
No 316
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.84 E-value=0.0045 Score=53.18 Aligned_cols=80 Identities=6% Similarity=0.155 Sum_probs=55.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~v~~ 89 (272)
.||+|+|. |-.|.-+.+.|..+.++ ++.....+.. .. ..+..++++++|++|+|+|+....++..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~---el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~s~~~~~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDI---ELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDAAREAVS 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCe---EEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHHHHHHHH
Confidence 48999987 99999999999887542 4432213321 11 1234456678999999999998877776
Q ss_pred HhchhcCCCCEEEEEcCC
Q 024121 90 QIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 90 ~l~~~l~~~~~iis~~~~ 107 (272)
.+. ..+..|||.++.
T Consensus 68 ~~~---~~g~~VIDlSad 82 (310)
T TIGR01851 68 LVD---NPNTCIIDASTA 82 (310)
T ss_pred HHH---hCCCEEEECChH
Confidence 653 367789988654
No 317
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.84 E-value=0.0064 Score=52.12 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=58.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHH-c----C--ceeecCc------hhhhccC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES-I----G--VKVLSDN------NAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~-~----g--~~~~~~~------~~~~~~a 72 (272)
+.+++.|||+|-.+++++..|.+.|. .+|+++ +|++ ++++.+.+ . + +.. .+. .+...++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~---~~i~i~-nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~a 197 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASA 197 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccC
Confidence 45789999999999999999998886 389999 9994 47777665 1 1 122 122 1234578
Q ss_pred CEEEEeeCcccHH---H-HHHHhchhcCCCCEEEEEc
Q 024121 73 DVVVFSVKPQVVK---D-VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 73 Divil~v~~~~~~---~-v~~~l~~~l~~~~~iis~~ 105 (272)
|+||-|+|..... . .... ...++++.++.|+.
T Consensus 198 DivINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 233 (288)
T PRK12749 198 DILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV 233 (288)
T ss_pred CEEEECCCCCCCCCCCCCCCCc-HHHCCCCCEEEEec
Confidence 9999988754321 1 1000 01245666777764
No 318
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.83 E-value=0.0053 Score=52.13 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=55.8
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||-| ..|.+++..|.+.|. .|+++ +.... +..+.+++||+||.++. +..+
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA----tVtv~-hs~t~--------------~l~~~~~~ADIvV~AvG~p~~i 214 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGA----SVSVC-HILTK--------------DLSFYTQNADIVCVGVGKPDLI 214 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----EEEEE-eCCcH--------------HHHHHHHhCCEEEEecCCCCcC
Confidence 4567899999999 999999999999998 99988 54321 23466889999999994 4433
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.++|++
T Consensus 215 ~~------~~vk~GavVIDv 228 (285)
T PRK14191 215 KA------SMVKKGAVVVDI 228 (285)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 235799999986
No 319
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.83 E-value=0.007 Score=50.06 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
...||.|+|+|.+|+.++.+|...|. .+++++ |.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv---g~i~lv-D~ 53 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV---GKLGLV-DD 53 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 34689999999999999999999997 366666 44
No 320
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.81 E-value=0.0062 Score=52.03 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=50.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----Cc---eeec--CchhhhccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GV---KVLS--DNNAVVEYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~---~~~~--~~~~~~~~aDivil~ 78 (272)
+.+++.|+|+|-.|++++..|.+.|. .+|+++ ||+.++++.+.+. +. .... +..+.+.++|+||=|
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINa 201 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA 201 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEc
Confidence 45789999999999999999999886 379999 9999999888651 21 1111 112234567888877
Q ss_pred eCc
Q 024121 79 VKP 81 (272)
Q Consensus 79 v~~ 81 (272)
+|.
T Consensus 202 Tp~ 204 (283)
T PRK14027 202 TPM 204 (283)
T ss_pred CCC
Confidence 763
No 321
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.79 E-value=0.0076 Score=51.47 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=24.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~ 43 (272)
||.|||+|.+|+.+++.|..+|. .+++++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV---g~Itlv 29 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV---RHITFV 29 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE
Confidence 68999999999999999999996 245444
No 322
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.78 E-value=0.0062 Score=55.80 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=50.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceeec--CchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~~--~~~~~~~~aDivil~v 79 (272)
..+||+|+|.|.-|.++++.|.+.|+ +|+++ |+++. ..+++.+.|+.+.. ...+.+.++|+||.+-
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA----KVTAF-DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC----EEEEE-CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 35789999999999999999999999 99999 87642 12346667876542 2234467899999883
No 323
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.76 E-value=0.011 Score=44.84 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~~ 86 (272)
.+.++|.|+|- ...|..++..|.+.|. .|+++ +++. .+.++.+++||+|+.++....+
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga----tV~~~-~~~t--------------~~l~~~v~~ADIVvsAtg~~~~-- 84 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA----TVYSC-DWKT--------------IQLQSKVHDADVVVVGSPKPEK-- 84 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEe-CCCC--------------cCHHHHHhhCCEEEEecCCCCc--
Confidence 34455666655 4556666666665555 56555 4322 1556778999999999954322
Q ss_pred HHHHhchhcCCCCEEEEE
Q 024121 87 VAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~ 104 (272)
++ ...+++|.++++.
T Consensus 85 -i~--~~~ikpGa~Vidv 99 (140)
T cd05212 85 -VP--TEWIKPGATVINC 99 (140)
T ss_pred -cC--HHHcCCCCEEEEc
Confidence 21 1236899999876
No 324
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=96.75 E-value=0.16 Score=41.21 Aligned_cols=162 Identities=14% Similarity=0.206 Sum_probs=88.8
Q ss_pred CceeecCchhhhccCCEEEEeeCccc-HHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-----CCCEEEEccCchh
Q 024121 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-----HSRFIRVMPNTPS 131 (272)
Q Consensus 58 g~~~~~~~~~~~~~aDivil~v~~~~-~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-----~~~~~~~~p~~~~ 131 (272)
|+.+++|..|+++++|+|+.=+|-.. -.+++.++...+.+|.++.+.+ .++...+.+.+. +-.+-+.||+.-.
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthac-tipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHAC-TIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeec-ccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 45677788899999999999987543 3566666666677887777654 567666655553 2456677876422
Q ss_pred hhcCCceEEEeCCCCCHHHHHHHHHHhhhc-CCeEEcCcccchhHHHch--HHHHHHHHHHHHHHHHH-HcCCCHHHHHH
Q 024121 132 AVGEAATVMSLGGTATEEDGELIGKLFGSV-GKIWRADEKLFDAITGLS--GPAYIFLAIEALADGGV-AAGLPRELALG 207 (272)
Q Consensus 132 ~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~-G~~~~~~e~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~Gl~~~~a~~ 207 (272)
. ..|...+..| -.+++.++.+-++=+.. |..+.+....++.+.-.+ ..+..+.-+-+.-++.. -.|-+.+-+..
T Consensus 205 e-mkgqvyiaeg-yaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivyagll~yrdavt~ilgapadfaqm 282 (343)
T COG4074 205 E-MKGQVYIAEG-YASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVYAGLLTYRDAVTDILGAPADFAQM 282 (343)
T ss_pred c-ccCcEEEecc-cccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 2 3455555433 24666666665555433 444666555444332222 11111111112222221 35655555555
Q ss_pred HHHHHHHHHHHHHHh
Q 024121 208 LASQTVLGAASMVTK 222 (272)
Q Consensus 208 ~~~~~~~g~~~~~~~ 222 (272)
+....+.....++.+
T Consensus 283 ma~eal~qi~~lmee 297 (343)
T COG4074 283 MAVEALQQIAKLMEE 297 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555543
No 325
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.75 E-value=0.0056 Score=51.98 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=50.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCchhhhccCCEEEEeeCcc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDivil~v~~~ 82 (272)
+++.|+|+|-.+.+++..|.+.|. .+|+++ +|++++.+.+.+ .+.....+. ....+|+||=|+|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF---TDGTIV-ARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 589999999999999999999886 269999 999999988876 332221111 124589999998743
No 326
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.70 E-value=0.26 Score=42.28 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=67.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cCceeecCchhhhc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IGVKVLSDNNAVVE 70 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~ 70 (272)
++||+-||+|-.|.+-..-+.-. .+.-+|++. |.+..+...... .++-..++.+..+.
T Consensus 1 ~~kiccigagyvggptcavia~k--cp~i~vtvv-d~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ 77 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALK--CPDIEVTVV-DISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIK 77 (481)
T ss_pred CceEEEecCcccCCcchheeeec--CCceEEEEE-ecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhh
Confidence 47899999999998876654432 133367777 887776544322 12335577888899
Q ss_pred cCCEEEEeeC-cc--------------cHHHHHHHhchhcCCCCEEEEEcCCCCH---HHHHHHhC
Q 024121 71 YSDVVVFSVK-PQ--------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (272)
Q Consensus 71 ~aDivil~v~-~~--------------~~~~v~~~l~~~l~~~~~iis~~~~~~~---~~l~~~~~ 118 (272)
.+|+||+.|. |. ..++....|.+.....++++.- ++++. +.+...+.
T Consensus 78 eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvek-stvpv~aaesi~~il~ 142 (481)
T KOG2666|consen 78 EADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEK-STVPVKAAESIEKILN 142 (481)
T ss_pred hcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEee-ccccchHHHHHHHHHh
Confidence 9999999982 21 1233444455555677787754 44443 45666665
No 327
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.69 E-value=0.011 Score=49.47 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
...||.|||+|.+|+.++.+|...|. .+++++ |.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~ 64 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV---GTLTLV-DF 64 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 34689999999999999999999997 266666 54
No 328
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.68 E-value=0.013 Score=48.94 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
..||.|+|+|-+|+.++..|...|. .+++++ |.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lv-D~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV---GNLTLL-DFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCCc
Confidence 4689999999999999999999997 367777 6543
No 329
>PRK06153 hypothetical protein; Provisional
Probab=96.67 E-value=0.01 Score=52.35 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----------------------HHHHHHHH----c--Ccee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----------------------KRRDAFES----I--GVKV 61 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----------------------~~~~~l~~----~--g~~~ 61 (272)
..||+|||+|-.|+.++..|.+.|. .+++++ |.+. .|++.+++ . ++..
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV---geI~LV-D~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~ 251 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV---REIHLF-DGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP 251 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC---CEEEEE-CCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence 4689999999999999999999996 266666 4320 12222322 1 2221
Q ss_pred e-----cCchhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCC
Q 024121 62 L-----SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (272)
Q Consensus 62 ~-----~~~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~ 108 (272)
. .+..+.+.++|+||.|+.....+.++.+... ..+..+|++.-++
T Consensus 252 ~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~--~~gIP~Id~G~~l 301 (393)
T PRK06153 252 HPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLE--ALGIPFIDVGMGL 301 (393)
T ss_pred EeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH--HcCCCEEEeeecc
Confidence 1 1222346788999999876666666655432 2345567653333
No 330
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.66 E-value=0.012 Score=52.60 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...||.|+|+|-+|+.++..|...|. .+++++ |++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv---g~i~lv-D~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV---GTLGIV-DHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 34689999999999999999999997 378888 776
No 331
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.63 E-value=0.036 Score=45.12 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=56.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHc-Cceee---cCchhhhccCCEEEEeeCccc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVL---SDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~-g~~~~---~~~~~~~~~aDivil~v~~~~ 83 (272)
+.+++.|||.|..|..=++.|++.|. +|+++ .... +....+.+. ++... .+..+ ..++++||.|+++..
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga----~v~Vv-s~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ 84 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGA----DVTVV-SPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE 84 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC----EEEEE-cCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH
Confidence 45789999999999999999999998 99999 6554 445555552 33221 22233 456999999999888
Q ss_pred HHHHHHHhc
Q 024121 84 VKDVAMQIR 92 (272)
Q Consensus 84 ~~~v~~~l~ 92 (272)
+.+-+.+..
T Consensus 85 ln~~i~~~a 93 (210)
T COG1648 85 LNERIAKAA 93 (210)
T ss_pred HHHHHHHHH
Confidence 776665544
No 332
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.63 E-value=0.004 Score=49.42 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=46.7
Q ss_pred eEEEEcccHHHHHH--HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeecCchhhhccCCEEEE
Q 024121 12 ILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 12 ~IgiIG~G~mG~~l--a~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDivil 77 (272)
||+|||.|..-.+. ..-+.....++..+|.++ |+++++++...+ .| +..+.|..+++++||+||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~-Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLM-DIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE--SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEE-cCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999876653 333334344455589999 999998763322 23 3457788999999999999
Q ss_pred eeCccc
Q 024121 78 SVKPQV 83 (272)
Q Consensus 78 ~v~~~~ 83 (272)
++...-
T Consensus 80 ~irvGg 85 (183)
T PF02056_consen 80 QIRVGG 85 (183)
T ss_dssp ---TTH
T ss_pred Eeeecc
Confidence 986553
No 333
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.63 E-value=0.0093 Score=50.53 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=56.1
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||-+ ..|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A----tVti~-hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i 214 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANA----TVDIC-HIFT--------------KDLKAHTKKADIVIVGVGKPNLI 214 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------cCHHHHHhhCCEEEEecCccccc
Confidence 4567899999998 899999999998887 99988 5432 234567899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.++|++
T Consensus 215 ~~------~~vk~gavvIDv 228 (281)
T PRK14183 215 TE------DMVKEGAIVIDI 228 (281)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 235789999986
No 334
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.62 E-value=0.015 Score=51.41 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=52.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCceee-
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL- 62 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~- 62 (272)
...||.|||+|-+|+.++.+|...|. .+++++ |.+. .|++ ++.+ ..+.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~ 102 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV---GHITII-DDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV 102 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence 34689999999999999999999997 367776 5542 1222 2223 223221
Q ss_pred -------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 63 -------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 63 -------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
.+..+.++++|+||.|+.....+.++..+.
T Consensus 103 ~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 103 SVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred EEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 112456789999999986655555555443
No 335
>PRK08328 hypothetical protein; Provisional
Probab=96.62 E-value=0.018 Score=47.74 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
..||.|||+|-+|+.++..|...|. .+++++ |.+.-....+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lv-D~D~ve~sNL 67 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV---GRILLI-DEQTPELSNL 67 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCccChhhh
Confidence 4689999999999999999999997 378888 8765433333
No 336
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.58 E-value=0.011 Score=53.96 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHHcCceee--cCchhhhcc-CCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL--SDNNAVVEY-SDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-aDivil~v 79 (272)
..++|.|+|.|.+|.++++.|.+.|+ +|.++ +++.. ..+.+.+.|+.+. .+..+...+ .|+||.+-
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA----NVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 45789999999999999999999999 99999 87642 2244555677654 234444444 89888874
No 337
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=96.57 E-value=0.026 Score=41.74 Aligned_cols=80 Identities=23% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCcchHHHHHHHH-------HhCCHHHHHHH
Q 024121 187 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMN 259 (272)
Q Consensus 187 ~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~ 259 (272)
+.|++. .+++.|+|++++.+++..+..++..+-. ..+..+.+..+.|++......+.+ ++.++.-.+.+
T Consensus 21 ~aEa~~-la~~~Gld~~~~~~vl~~~~~~s~~~~~---~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~ 96 (122)
T PF14833_consen 21 LAEALA-LAEKAGLDPEQLLDVLSAGSGGSWMLKN---RAPRMILNGDFDPGFSLDLARKDLRLALDLAKEAGVPLPLGS 96 (122)
T ss_dssp HHHHHH-HHHHTTS-HHHHHHHHHTSTTHBHHHHH---HHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred HHHHHH-HHHHhCCCHHHHHHHHccCCcCchHHHh---hhhhhhhcccCCccchhHhhccHHHHHHHHHHHcCCCCHHHH
Confidence 444444 5789999999999999988777754432 234457788888987776665554 45589889999
Q ss_pred HHHHHHHHHhh
Q 024121 260 AVVAAAKRSRE 270 (272)
Q Consensus 260 ~~~~~~~r~~~ 270 (272)
...+.++++.+
T Consensus 97 ~~~~~~~~a~~ 107 (122)
T PF14833_consen 97 AARQLYQAAKA 107 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 338
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.57 E-value=0.022 Score=50.26 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=56.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeecCc-h--------hhh--ccCCEEEEee
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDN-N--------AVV--EYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~-~--------~~~--~~aDivil~v 79 (272)
++.|+|+|.||...+..+...|. .+|.+. |+++++++.+++ .+.....+. . +.. ..+|++|-|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga---~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA---SVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC---ceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 79999999999977666666664 488889 999999988877 555543332 1 112 2489999999
Q ss_pred CcccHHHHHHHhchhcCCCCEEE
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~ii 102 (272)
-.. ..+.+....++++..++
T Consensus 247 G~~---~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 247 GSP---PALDQALEALRPGGTVV 266 (350)
T ss_pred CCH---HHHHHHHHHhcCCCEEE
Confidence 622 23333334445555554
No 339
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.53 E-value=0.018 Score=51.13 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=52.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--e
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~----l~~--~g~~~--~ 62 (272)
..+|.|||+|-+|+.++..|...|. .+++++ |.+. .|++. +.+ ..+++ .
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv---g~i~iv-D~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV---GTITLI-DDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-eCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 4689999999999999999999996 367777 5541 12222 222 12221 1
Q ss_pred ------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 63 ------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
.+..+.++++|+||-|+.....+..+..+.
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 123456788999999987766666665544
No 340
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.51 E-value=0.019 Score=46.42 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=29.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV---g~i~lv-D~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI---DSITIV-DHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 4689999999999999999999997 367777 654
No 341
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.49 E-value=0.012 Score=54.15 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=49.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-H----HHHHHHcCceeecC-chhhhccCCEEEEee
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-R----RDAFESIGVKVLSD-NNAVVEYSDVVVFSV 79 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~----~~~l~~~g~~~~~~-~~~~~~~aDivil~v 79 (272)
....++|.|||.|..|.++|..|.+.|+ +|+++ ++++. . .+.+.+.|+.+... ..+...++|+||++.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA----RVTVV-DDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 3456799999999999999999999999 99999 75532 2 23455578776422 122345799999886
No 342
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.46 E-value=0.012 Score=54.51 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=49.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHHc--Cceeec--CchhhhccCCEEEEe--eC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESI--GVKVLS--DNNAVVEYSDVVVFS--VK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~--g~~~~~--~~~~~~~~aDivil~--v~ 80 (272)
+.++|.|+|.|..|.++|+.|.+.|+ +|+++ |... +..+++.+. |+.+.. ...+.+.++|+||.. +|
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGA----RLRVA-DTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLS 80 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-cCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCC
Confidence 45789999999999999999999999 99999 8643 233445554 444422 234556789999987 35
Q ss_pred c
Q 024121 81 P 81 (272)
Q Consensus 81 ~ 81 (272)
+
T Consensus 81 ~ 81 (498)
T PRK02006 81 P 81 (498)
T ss_pred C
Confidence 5
No 343
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.35 E-value=0.016 Score=49.08 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-ccc
Q 024121 6 IPAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (272)
Q Consensus 6 ~~~~~~~IgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~ 83 (272)
.....+++.|||-+ ..|.+++..|...|. .|+++ .++. .+..+.+++||+||.+++ +..
T Consensus 148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~a----tVtv~-hs~t--------------~~L~~~~~~ADIvI~Avgk~~l 208 (279)
T PRK14178 148 ISIAGKRAVVVGRSIDVGRPMAALLLNADA----TVTIC-HSKT--------------ENLKAELRQADILVSAAGKAGF 208 (279)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHhCCC----eeEEE-ecCh--------------hHHHHHHhhCCEEEECCCcccc
Confidence 34567899999998 999999999988887 89988 6543 245667889999999996 433
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+. . ..+++|.+|||+.
T Consensus 209 v~---~---~~vk~GavVIDVg 224 (279)
T PRK14178 209 IT---P---DMVKPGATVIDVG 224 (279)
T ss_pred cC---H---HHcCCCcEEEEee
Confidence 22 1 1257999999874
No 344
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.33 E-value=0.044 Score=46.18 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cc
Q 024121 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KP 81 (272)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~ 81 (272)
.+++++++-|-|+ +-+|..+|+.|.+.|+ +|.+. .|+.++++++++ ..++.. ..++-++.+ .+
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~----~liLv-aR~~~kL~~la~-------~l~~~~-~v~v~vi~~DLs~~ 68 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLARRGY----NLILV-ARREDKLEALAK-------ELEDKT-GVEVEVIPADLSDP 68 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHHHH-------HHHHhh-CceEEEEECcCCCh
Confidence 3456677888888 9999999999999999 99999 999999988875 111111 223333333 34
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+.+..+..++.....+=.++|..
T Consensus 69 ~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 69 EALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred hHHHHHHHHHHhcCCcccEEEEC
Confidence 56777777766542233567764
No 345
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.31 E-value=0.019 Score=48.84 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ ++.. .+..+.+++||+||.++. +..+
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----TVtic-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 212 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDA----TVTLA-HSKT--------------QDLPAVTRRADVLVVAVGRPHLI 212 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 456789999998 6789999999998887 99988 5432 245667889999999994 4433
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 213 ~~------~~vk~GavVIDV 226 (287)
T PRK14173 213 TP------EMVRPGAVVVDV 226 (287)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 236799999986
No 346
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.26 E-value=0.065 Score=44.81 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=63.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH-------cCceeecCchhhhccCCEEEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-------IGVKVLSDNNAVVEYSDVVVF 77 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~-------~g~~~~~~~~~~~~~aDivil 77 (272)
...||.|+|.|+.|.+.+..++..|. ..++.+. |.++++++- |+- ..+....|. .+..+++++|+
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~L--adel~lv-Dv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy-~~sa~S~lvIi 94 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGL--ADELVLV-DVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY-SVSANSKLVII 94 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhh--hhceEEE-ecCcchhhhhhhhhccccccccCCceEecCcc-cccCCCcEEEE
Confidence 35699999999999999999998886 3378888 888876542 110 122233333 44678999999
Q ss_pred eeCc--c--c-H-------HHHHHHhchh---cCCCCEEEEEcCCCCHHH
Q 024121 78 SVKP--Q--V-V-------KDVAMQIRPL---LSRKKLLVSVAAGVKLKD 112 (272)
Q Consensus 78 ~v~~--~--~-~-------~~v~~~l~~~---l~~~~~iis~~~~~~~~~ 112 (272)
..-. . . - .+++..+.|. ..|+.+++-.++++.+-+
T Consensus 95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilT 144 (332)
T KOG1495|consen 95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILT 144 (332)
T ss_pred ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHH
Confidence 8722 1 1 1 1233333332 368888776777766543
No 347
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.0074 Score=52.55 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=47.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeec----CchhhhccCCEEE---EeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS----DNNAVVEYSDVVV---FSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~----~~~~~~~~aDivi---l~v~~ 81 (272)
+++|||||-|.+|..|+..-.+-|+ ++.+. +.+++....... .-+.... ...+++++||+|= --||.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~----~v~vL-dp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~ 75 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGI----KVIVL-DPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPA 75 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC----EEEEe-cCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCH
Confidence 4789999999999999999999999 99999 877654322222 1222211 2345677888873 33444
Q ss_pred ccHHHH
Q 024121 82 QVVKDV 87 (272)
Q Consensus 82 ~~~~~v 87 (272)
+.++.+
T Consensus 76 ~aL~~l 81 (375)
T COG0026 76 EALEKL 81 (375)
T ss_pred HHHHHH
Confidence 444433
No 348
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.25 E-value=0.022 Score=48.25 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~A----tVt~c-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 215 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENA----TVTIC-HSKT--------------KNLKEVCKKADILVVAIGRPKFI 215 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 456789999998 6789999999998887 99998 6432 245677889999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 216 ~~------~~ik~gavVIDv 229 (278)
T PRK14172 216 DE------EYVKEGAIVIDV 229 (278)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 235799999986
No 349
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.24 E-value=0.011 Score=52.11 Aligned_cols=94 Identities=11% Similarity=0.156 Sum_probs=57.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeecC-chhhhccCCEEEEeeCcccHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSD-NNAVVEYSDVVVFSVKPQVVKDV 87 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~-~~~~~~~aDivil~v~~~~~~~v 87 (272)
++|||+|+ |..|+.|.+.|.+...++..++..+.++.. .+.-.+......+..- ..+...+.|++|.|.+.+..+++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 58999998 999999999999444335455665512211 1111111111222211 22356789999999988877777
Q ss_pred HHHhchhcCCC--CEEEEEcCC
Q 024121 88 AMQIRPLLSRK--KLLVSVAAG 107 (272)
Q Consensus 88 ~~~l~~~l~~~--~~iis~~~~ 107 (272)
...+. ..| .+|||.++.
T Consensus 81 ~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 81 YPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred HHHHH---hCCCCeEEEECChh
Confidence 66654 355 578887553
No 350
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.022 Score=48.70 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 215 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANA----TVTIA-HSRT--------------QDLASITREADILVAAAGRPNLI 215 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 445689999998 6689999999998887 89988 5432 245667899999999994 4433
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 216 ~~------~~ik~gavVIDv 229 (297)
T PRK14186 216 GA------EMVKPGAVVVDV 229 (297)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236799999986
No 351
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.20 E-value=0.022 Score=54.42 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=50.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeec----
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (272)
..+||.|||.|..|.+.|..|.+.|+ +|++| ++.+. ..+.+.+.|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~----~Vtv~-e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV----QVDVF-DRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC----cEEEE-eCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 46899999999999999999999999 99999 77652 23444556765421
Q ss_pred ----CchhhhccCCEEEEeeC
Q 024121 64 ----DNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 64 ----~~~~~~~~aDivil~v~ 80 (272)
+..+.....|.||+++-
T Consensus 384 ~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 384 GRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred CCcCCHHHHHhcCCEEEEeCC
Confidence 22344567899999983
No 352
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.19 E-value=0.042 Score=50.43 Aligned_cols=103 Identities=11% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCCCeEEEEcc----------cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HH-HHH-----------------H-
Q 024121 8 AESFILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RD-AFE-----------------S- 56 (272)
Q Consensus 8 ~~~~~IgiIG~----------G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~-~l~-----------------~- 56 (272)
...+||+|+|+ ..-...++..|.+.|. +|.+| |.--.. .. .+. .
T Consensus 322 ~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (473)
T PLN02353 322 VSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIY-DPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTA 396 (473)
T ss_pred cCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCC----EEEEE-CCCCChHHHHHHhhccccccccccccccccccc
Confidence 45689999998 4577889999999999 99999 875322 11 110 0
Q ss_pred -cCceeecCchhhhccCCEEEEeeCcccHHHH-HHHhchhcCCCCEEEEEcCCCCHHHHHH
Q 024121 57 -IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (272)
Q Consensus 57 -~g~~~~~~~~~~~~~aDivil~v~~~~~~~v-~~~l~~~l~~~~~iis~~~~~~~~~l~~ 115 (272)
.++..+.+..++++++|+|+++++...++++ ++.+.+.+++..+|+|.-+-+..+.+++
T Consensus 397 ~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~ 457 (473)
T PLN02353 397 VKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLRE 457 (473)
T ss_pred ccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHh
Confidence 0235555667889999999999988776543 3444444444457888776666665543
No 353
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.18 E-value=0.026 Score=47.96 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----tVtic-hs~T--------------~~l~~~~~~ADIvI~AvG~p~~i 213 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDA----TVTIA-HSKT--------------RNLKQLTKEADILVVAVGVPHFI 213 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 446689999998 6689999999998887 89988 5432 245667899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 214 ~~------~~vk~GavVIDv 227 (282)
T PRK14169 214 GA------DAVKPGAVVIDV 227 (282)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236799999986
No 354
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.17 E-value=0.013 Score=50.53 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH---HHH-cC----cee-------ecCchhhhccC
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA---FES-IG----VKV-------LSDNNAVVEYS 72 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~---l~~-~g----~~~-------~~~~~~~~~~a 72 (272)
..++|++-|+ |-+|+.+++.|++.|| .|... -|++++.+. +.+ .+ ..+ ..+..+++++|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY----~V~gt-VR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY----TVRGT-VRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC----EEEEE-EcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence 5689999987 9999999999999999 99998 788776322 443 11 221 23456789999
Q ss_pred CEEEEee
Q 024121 73 DVVVFSV 79 (272)
Q Consensus 73 Divil~v 79 (272)
|.||=+-
T Consensus 80 dgVfH~A 86 (327)
T KOG1502|consen 80 DGVFHTA 86 (327)
T ss_pred CEEEEeC
Confidence 9999553
No 355
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.17 E-value=0.026 Score=47.98 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+..++||+||.++. +..+
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----tVt~c-hs~T--------------~~l~~~~~~ADIvIsAvGk~~~i 216 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNA----TVTLC-HSKT--------------QNLPSIVRQADIIVGAVGKPEFI 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEeCCCcCcc
Confidence 456689999998 6789999999998887 99998 6432 245567899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 217 ~~------~~ik~gavVIDv 230 (284)
T PRK14177 217 KA------DWISEGAVLLDA 230 (284)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236799999986
No 356
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.15 E-value=0.033 Score=44.51 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cCceee--cC----chhhhccCCEEE
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IGVKVL--SD----NNAVVEYSDVVV 76 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g~~~~--~~----~~~~~~~aDivi 76 (272)
..+.+++.|||- ...|.+++.-|.+.|. .|+++ +.+.-.. +.. ..-+-+ .+ ..+.+++||+||
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~A----tVti~-~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVI 131 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGA----RVYSV-DINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVI 131 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEE-ecCcccc--cccccccccccccccchhhHHHHHhhhCCEEE
Confidence 567899999998 5679999999999988 99988 7432111 000 000001 12 457789999999
Q ss_pred EeeCcccHHHHHHHhchhcCCCCEEEEEc
Q 024121 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 77 l~v~~~~~~~v~~~l~~~l~~~~~iis~~ 105 (272)
.+++...+. +. ...+++|.++|++.
T Consensus 132 sAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 132 TGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred EccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 999543321 11 12357999999863
No 357
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.15 E-value=0.011 Score=51.94 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHh--------CCCCCCCcE-EEEeCCCH----------HHHHHHHH-cC-ce-ee-----
Q 024121 10 SFILGFIGAGKMAESIAKGVAK--------SGVLPPDRI-CTAVHSNL----------KRRDAFES-IG-VK-VL----- 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~--------~g~~~~~~V-~v~~~r~~----------~~~~~l~~-~g-~~-~~----- 62 (272)
.++|+++|+|++|+.+++.|.+ .|. . -+| .+. +++. +++.+.++ .+ +. ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~-~-l~VvaV~-ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV-E-LKVVSIT-DTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC-C-EEEEEEE-eCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 4789999999999999998877 343 0 133 334 5431 22222222 11 10 10
Q ss_pred --cCchhhh--ccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 63 --SDNNAVV--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 63 --~~~~~~~--~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+..+.+ .++|+||-++.++...+++.+. +..++-||+...+
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VVtanK~ 124 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVVTSNKP 124 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEEECCHH
Confidence 1445665 4799999998777666666554 3466667755443
No 358
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.15 E-value=0.018 Score=53.76 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
...+++.|+|+|-+|.+++..|.+.|. +|+++ +|+.++++.+.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~----~V~i~-nR~~e~a~~la~ 420 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA----RVVIA-NRTYERAKELAD 420 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHH
Confidence 445789999999999999999999998 99999 999998888765
No 359
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.14 E-value=0.055 Score=47.68 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=58.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC---CHHHHHHHHHcCceeecCchh------hhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS---NLKRRDAFESIGVKVLSDNNA------VVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r---~~~~~~~l~~~g~~~~~~~~~------~~~~aDivil~v 79 (272)
...+|.|+|+|.+|...+..+...|. +|+++ +| ++++.+.+++.|+.......+ .....|+||-|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~----~vi~~-~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF----EVYVL-NRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc
Confidence 34689999999999998888888887 88888 87 677877777777754321111 123578999888
Q ss_pred Ccc-cHHHHHHHhchhcCCCCEEEEE
Q 024121 80 KPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 80 ~~~-~~~~v~~~l~~~l~~~~~iis~ 104 (272)
... .+.+.+. .++++..++.+
T Consensus 247 g~~~~~~~~~~----~l~~~G~~v~~ 268 (355)
T cd08230 247 GVPPLAFEALP----ALAPNGVVILF 268 (355)
T ss_pred CCHHHHHHHHH----HccCCcEEEEE
Confidence 643 3444433 34555555543
No 360
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.13 E-value=0.026 Score=47.90 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ ++.. .+..+..++||+||.++. |..+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~a----tVt~c-hs~T--------------~nl~~~~~~ADIvIsAvGkp~~i 214 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGA----TVSVC-HIKT--------------KDLSLYTRQADLIIVAAGCVNLL 214 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 456689999998 5689999999998887 89988 5432 245667899999999994 5543
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.++||+
T Consensus 215 ~~------~~vk~GavVIDv 228 (282)
T PRK14166 215 RS------DMVKEGVIVVDV 228 (282)
T ss_pred CH------HHcCCCCEEEEe
Confidence 32 235799999986
No 361
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.13 E-value=0.021 Score=52.25 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=48.0
Q ss_pred eEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeec-CchhhhccCCEEEEee
Q 024121 12 ILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDivil~v 79 (272)
+|-|||.|..|.+ +|+.|.+.|+ +|+++ |++.. ..++|.+.|+.+.. ...+.+.++|+||.+-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~----~v~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY----QVSGS-DIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC----eEEEE-CCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 4889999999998 9999999999 99999 86543 33456667877643 2334466899998873
No 362
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.12 E-value=0.044 Score=46.93 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCc-EEEEeCCC--HHHHHHHHHcCceeecCchhhhcc--CCEEEEeeCcc
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDR-ICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQ 82 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~-V~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~--aDivil~v~~~ 82 (272)
+..||.|.|. |++|..+.++|.+.|+ + ++.. ++. .+.. .|+....+..++-+. .|+.++++|++
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~----~~v~pV-np~~~~~~v-----~G~~~y~sv~dlp~~~~~DlAvi~vp~~ 76 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGT----NIVGGV-TPGKGGTTV-----LGLPVFNTVAEAVEATGANASVIYVPPP 76 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCC----CEEEEE-CCCCCCCeE-----eCeeccCCHHHHhhccCCCEEEEEcCHH
Confidence 3568999998 9999999999999888 5 3344 544 2111 578888888887776 89999999999
Q ss_pred cHHHHHHHhchhcCCCCEEEEEcCCCCHH
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLK 111 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~~~~~~~~ 111 (272)
.+.+++++.... .- +.+|-.++|...+
T Consensus 77 ~v~~~l~e~~~~-gv-k~avI~s~Gf~~~ 103 (291)
T PRK05678 77 FAADAILEAIDA-GI-DLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHC-CC-CEEEEECCCCCHH
Confidence 999998876542 12 2333345777764
No 363
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.11 E-value=0.025 Score=54.25 Aligned_cols=66 Identities=24% Similarity=0.376 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeec----
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (272)
..++|.|||.|..|.+.|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~----~V~V~-E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV----AVTVY-DRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 56799999999999999999999999 99999 87532 12334446765432
Q ss_pred ----CchhhhccCCEEEEee
Q 024121 64 ----DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 64 ----~~~~~~~~aDivil~v 79 (272)
+..+...+.|.||+++
T Consensus 401 ~~~i~~~~~~~~~DavilAt 420 (654)
T PRK12769 401 GKDISLESLLEDYDAVFVGV 420 (654)
T ss_pred CCcCCHHHHHhcCCEEEEeC
Confidence 1233345799999987
No 364
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.10 E-value=0.024 Score=55.72 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=51.1
Q ss_pred CCCCCeEEEEcccHHHHHH-HHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeec-CchhhhccCCEEEEe
Q 024121 7 PAESFILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFS 78 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~l-a~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDivil~ 78 (272)
|+.+++|.|||.|..|.+. |+.|.+.|+ +|+++ |.++ ...++|.+.|+.+.. ...+.+.++|+|+..
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~----~V~~s-D~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGY----SVSGS-DLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEEC
Confidence 4556689999999999997 999999999 99999 8653 334556667877642 233556789999877
No 365
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.10 E-value=0.028 Score=47.75 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~a----tVtic-hs~T--------------~~l~~~~~~ADIvI~AvG~~~~i 214 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENA----TVTIA-HSRT--------------KDLPQVAKEADILVVATGLAKFV 214 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 446789999998 5679999999998887 99988 5432 245677899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.++|++
T Consensus 215 ~~------~~vk~GavVIDv 228 (284)
T PRK14170 215 KK------DYIKPGAIVIDV 228 (284)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 235789999986
No 366
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.09 E-value=0.029 Score=47.78 Aligned_cols=73 Identities=14% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++ .|..+
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~A----TVtic-hs~T--------------~~L~~~~~~ADIvV~AvGkp~~i 216 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENC----SVTIC-HSKT--------------HNLSSITSKADIVVAAIGSPLKL 216 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCCCcc
Confidence 345689999998 5689999999998887 89988 5322 24567789999999999 45543
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 217 ~~------~~vk~GavVIDv 230 (288)
T PRK14171 217 TA------EYFNPESIVIDV 230 (288)
T ss_pred CH------HHcCCCCEEEEe
Confidence 32 235799999986
No 367
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.08 E-value=0.025 Score=47.28 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=46.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--Cceee-c---C-c---hhhh-ccCCEEE
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKVL-S---D-N---NAVV-EYSDVVV 76 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g~~~~-~---~-~---~~~~-~~aDivi 76 (272)
++|+|.|+|+ |.+|+.+++.|++.|+ +|++. .|++++...+... ++.+. . + . .+.+ .+.|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF----AVKAG-VRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC----EEEEE-ecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 4579999995 9999999999999999 99998 8988775544321 23221 1 1 1 1233 4688888
Q ss_pred EeeC
Q 024121 77 FSVK 80 (272)
Q Consensus 77 l~v~ 80 (272)
.+.+
T Consensus 91 ~~~g 94 (251)
T PLN00141 91 CATG 94 (251)
T ss_pred ECCC
Confidence 7754
No 368
>PRK07411 hypothetical protein; Validated
Probab=96.08 E-value=0.036 Score=49.67 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHH--cCcee--e
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFES--IGVKV--L 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~----~~l~~--~g~~~--~ 62 (272)
..||.|||+|-+|+.++.+|..+|. .+++++ |.+. .|+ +.+.+ ..+++ .
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv---g~l~lv-D~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI---GRIGIV-DFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 4689999999999999999999997 256666 4321 112 22222 22322 1
Q ss_pred ------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 63 ------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
.+..+.+.++|+||-|+.....+..+.++.
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 122356789999999987666666665544
No 369
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.06 E-value=0.031 Score=47.87 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~A----TVtvc-hs~T--------------~nl~~~~~~ADIvv~AvGk~~~i 224 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADA----TVTVV-HSRT--------------PDPESIVREADIVIAAAGQAMMI 224 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 456789999998 5679999999998887 99998 5432 245677899999999993 4332
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 225 ~~------~~vk~gavVIDv 238 (299)
T PLN02516 225 KG------DWIKPGAAVIDV 238 (299)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236799999986
No 370
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.04 E-value=0.031 Score=47.69 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----TVt~c-hs~T--------------~~l~~~~~~ADIvVsAvGkp~~i 217 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENC----TVTTV-HSAT--------------RDLADYCSKADILVAAVGIPNFV 217 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 455689999988 6789999999998887 99988 5432 245677899999999994 5443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 218 ~~------~~ik~gaiVIDV 231 (294)
T PRK14187 218 KY------SWIKKGAIVIDV 231 (294)
T ss_pred CH------HHcCCCCEEEEe
Confidence 22 235789999986
No 371
>PLN03075 nicotianamine synthase; Provisional
Probab=96.03 E-value=0.069 Score=45.76 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=60.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC----cee-ecCchhh---hccCCEE
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG----VKV-LSDNNAV---VEYSDVV 75 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g----~~~-~~~~~~~---~~~aDiv 75 (272)
...+|.+||+|..|..-.- +.+ ++.+...++.+ |++++..+..++ .| ++. ..|..+. ..+.|+|
T Consensus 123 ~p~~VldIGcGpgpltaii-laa-~~~p~~~~~gi-D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIV-LAK-HHLPTTSFHNF-DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHH-HHH-hcCCCCEEEEE-eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 5578999999988764322 222 12233478899 999977654443 22 222 1222222 3689999
Q ss_pred EEeeC----cccHHHHHHHhchhcCCCCEEEEE
Q 024121 76 VFSVK----PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 76 il~v~----~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+.+- ...-.++++.+...++||.+++--
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99962 245678889999999999888743
No 372
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.02 E-value=0.068 Score=45.42 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=67.0
Q ss_pred CCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH---HHHHcCceee--cCchhhh-----cc
Q 024121 3 AFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFESIGVKVL--SDNNAVV-----EY 71 (272)
Q Consensus 3 ~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~---~l~~~g~~~~--~~~~~~~-----~~ 71 (272)
.++.+...+||.+.|+ |+||+..++.+.+.++ ++....++.+...+ .+...++.+. .+.++++ +.
T Consensus 4 ~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~ 79 (286)
T PLN02775 4 TASPPGSAIPIMVNGCTGKMGHAVAEAAVSAGL----QLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEY 79 (286)
T ss_pred cCCCcCCCCeEEEECCCChHHHHHHHHHhcCCC----EEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccC
Confidence 4555556689999999 9999999999999777 76654365442211 1211245555 6666655 24
Q ss_pred CC-EEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 72 SD-VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 72 aD-ivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
+| ++|=-+.|+.+.+.+.... ..+..+|.-++|.+.+++++..
T Consensus 80 ~~~VvIDFT~P~a~~~~~~~~~---~~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 80 PNLIVVDYTLPDAVNDNAELYC---KNGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred CCEEEEECCChHHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHH
Confidence 78 5555556666666655433 2344455456778877766544
No 373
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.01 E-value=0.087 Score=43.71 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=53.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--e-c
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L-S 63 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~----l~~--~g~~~--~-~ 63 (272)
||.+||+|.+|+.++++|...|+ .+++++ |.+. .|++. +.+ ..+.+ . .
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv---g~i~iv-D~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~ 76 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF---GQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQN 76 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEec
Confidence 68999999999999999999997 366666 4422 12221 222 12222 1 1
Q ss_pred C-------chhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEE
Q 024121 64 D-------NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 64 ~-------~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
. ..+..++.|+||.|+.....+..+.++.-. .+..+|+.
T Consensus 77 ~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~--~~iplI~~ 122 (234)
T cd01484 77 KVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIF--LIVPLIES 122 (234)
T ss_pred cCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 1 134578899999998766666666654422 24456653
No 374
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.99 E-value=0.049 Score=44.85 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.++|.|.|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+... + .+ ..+++.++.. .++.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~----~v~~~-~r~~~~~~~~~~~-~------~~--~~~~~~~~~~D~~~~~~~ 69 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA----KVVIY-DSNEEAAEALAAE-L------RA--AGGEARVLVFDVSDEAAV 69 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChhHHHHHHHH-H------Hh--cCCceEEEEccCCCHHHH
Confidence 4578999986 9999999999999999 89999 9998765543320 0 00 1233444333 23345
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+++.++...+.+-..+|++.+
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag 91 (246)
T PRK05653 70 RALIEAAVEAFGALDILVNNAG 91 (246)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666665444334356776643
No 375
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.99 E-value=0.033 Score=47.27 Aligned_cols=73 Identities=14% Similarity=0.292 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~A----TVt~c-hs~T--------------~dl~~~~k~ADIvIsAvGkp~~i 215 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKA----TVTTC-HRFT--------------TDLKSHTTKADILIVAVGKPNFI 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEE-cCCC--------------CCHHHHhhhcCEEEEccCCcCcC
Confidence 445789999987 6789999999998887 99988 5432 244556889999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 216 ~~------~~vk~gavVIDv 229 (282)
T PRK14180 216 TA------DMVKEGAVVIDV 229 (282)
T ss_pred CH------HHcCCCcEEEEe
Confidence 32 235789999986
No 376
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.98 E-value=0.036 Score=52.11 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~ 43 (272)
..||.|||+|-+|+.+++.|...|. .+++++
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV---g~ItlV 368 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV---RHITFV 368 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---CeEEEE
Confidence 4689999999999999999999997 255555
No 377
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.96 E-value=0.034 Score=47.24 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHh--CCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAK--SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQ 82 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~--~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~ 82 (272)
....+++.|||- +..|.+++.-|.+ .+. .|+++ +... .+..+.+++||+||.++. |.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~a----tVtvc-hs~T--------------~~l~~~~k~ADIvV~AvGkp~ 215 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENA----TVTLC-HTGT--------------RDLAAHTRRADIIVAAAGVAH 215 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCC----EEEEe-CCCC--------------CCHHHHHHhCCEEEEecCCcC
Confidence 445789999988 6789999999987 566 89988 5432 355677899999999994 44
Q ss_pred cHHHHHHHhchhcCCCCEEEEE
Q 024121 83 VVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 83 ~~~~v~~~l~~~l~~~~~iis~ 104 (272)
.+.. .++++|.+|||+
T Consensus 216 ~i~~------~~ik~GavVIDv 231 (284)
T PRK14193 216 LVTA------DMVKPGAAVLDV 231 (284)
T ss_pred ccCH------HHcCCCCEEEEc
Confidence 3321 236799999986
No 378
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.034 Score=47.34 Aligned_cols=74 Identities=8% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++....+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~a----tVt~c-hs~t--------------~~l~~~~~~ADIvI~AvG~p~~- 214 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENA----TVTYC-HSKT--------------KNLAELTKQADILIVAVGKPKL- 214 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-eCCc--------------hhHHHHHHhCCEEEEecCCCCc-
Confidence 456789999988 7789999999998887 99988 5432 2456678999999999943332
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
+. ...+++|.+|||+
T Consensus 215 --i~--~~~ik~gavVIDv 229 (284)
T PRK14190 215 --IT--ADMVKEGAVVIDV 229 (284)
T ss_pred --CC--HHHcCCCCEEEEe
Confidence 21 1235799999986
No 379
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.95 E-value=0.045 Score=50.30 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeecC---
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLSD--- 64 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~~--- 64 (272)
..++|.|||.|..|...|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~----~V~i~-e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV----QVVVF-DRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe
Confidence 45789999999999999999999999 99999 77641 234455567654221
Q ss_pred -----chhhhccCCEEEEee
Q 024121 65 -----NNAVVEYSDVVVFSV 79 (272)
Q Consensus 65 -----~~~~~~~aDivil~v 79 (272)
..+....+|.||+++
T Consensus 215 ~~~~~~~~~~~~~D~vilAt 234 (467)
T TIGR01318 215 GRDISLDDLLEDYDAVFLGV 234 (467)
T ss_pred CCccCHHHHHhcCCEEEEEe
Confidence 123335799999998
No 380
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.95 E-value=0.045 Score=45.59 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=36.2
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+..++|-|.| .|.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 45 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA----KVVIA-DLNDEAAAAAA 45 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 3457899997 59999999999999999 99999 99987765543
No 381
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.87 E-value=0.078 Score=43.89 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
+..+|.|+|+|.+|+.++.+|...|. .+++++ |.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV---g~i~Lv-D~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV---GKLTLI-DFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 45689999999999999999999997 367777 543
No 382
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.86 E-value=0.11 Score=44.07 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=28.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...+|.|+|+|-+|+..+..|...|. .+++++ |.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLi-D~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLI-DMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCC
Confidence 45689999999999999999999995 266666 543
No 383
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.075 Score=45.06 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=36.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+++++|-|.|+ |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+
T Consensus 2 ~~~~~vlVtGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~l~~ 46 (277)
T PRK06180 2 SSMKTWLITGVSSGFGRALAQAALAAGH----RVVGT-VRSEAARADFEA 46 (277)
T ss_pred CCCCEEEEecCCChHHHHHHHHHHhCcC----EEEEE-eCCHHHHHHHHh
Confidence 34567888876 9999999999999999 99999 999887766543
No 384
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.84 E-value=0.066 Score=45.40 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=48.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------cCcee-ecCchh---hhccCCEEEE
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------IGVKV-LSDNNA---VVEYSDVVVF 77 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---------~g~~~-~~~~~~---~~~~aDivil 77 (272)
.||.|||.|.+-.....-....|. ...|..+ |++++..+...+ .+... +.+..+ -+.++|+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~--~~~v~~i-D~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGP--GARVHNI-DIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT----EEEEE-ESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCC--CCeEEEE-eCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 589999999998765443323221 1267788 999976543322 12232 223222 2568999999
Q ss_pred eeCcc----cHHHHHHHhchhcCCCCEEE
Q 024121 78 SVKPQ----VVKDVAMQIRPLLSRKKLLV 102 (272)
Q Consensus 78 ~v~~~----~~~~v~~~l~~~l~~~~~ii 102 (272)
+--.. .-.+++..+..++++|..|+
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 96554 67789999999999998777
No 385
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.83 E-value=0.051 Score=48.79 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=50.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCcee--e
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKV--L 62 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~--~ 62 (272)
..||.|||+|-+|+.++.+|...|. .+++++ |.+. .|++ .+.+ ..+++ .
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV---GTLGIV-EFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 4689999999999999999999997 256666 4321 1222 2222 12332 1
Q ss_pred ------cCchhhhccCCEEEEeeCcccHHHHHHHhc
Q 024121 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (272)
Q Consensus 63 ------~~~~~~~~~aDivil~v~~~~~~~v~~~l~ 92 (272)
.+..+.++++|+||-|+.....+-.+.++.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 153 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAA 153 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 112356788999999986555555555543
No 386
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.83 E-value=0.069 Score=45.64 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=65.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeecCchhhhcc--CCEEEEeeCcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--aDivil~v~~~~~ 84 (272)
+..||.+.|. |.+|+.+-.++...|+ + .+| .-+|.+ .++ -.|+....+..|+-+. .|+.++++|++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~----~-~v~-~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v 76 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGT----N-IVG-GVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPFA 76 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCC----C-EEE-EECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHHH
Confidence 3568999997 9999999999999998 5 333 334431 111 1578888888887665 7999999999999
Q ss_pred HHHHHHhchhcCCCCEEEEEcCCCCHH
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAGVKLK 111 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~~~~~ 111 (272)
.+++++.... .-...+| .++|.+..
T Consensus 77 ~~~l~e~~~~-Gvk~avI-is~Gf~e~ 101 (286)
T TIGR01019 77 ADAIFEAIDA-GIELIVC-ITEGIPVH 101 (286)
T ss_pred HHHHHHHHHC-CCCEEEE-ECCCCCHH
Confidence 9999876542 1222333 56777654
No 387
>PLN02477 glutamate dehydrogenase
Probab=95.83 E-value=0.12 Score=46.45 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCC----------HHHHHHHHHc--------CceeecCchh
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSN----------LKRRDAFESI--------GVKVLSDNNA 67 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~----------~~~~~~l~~~--------g~~~~~~~~~ 67 (272)
....+||+|.|.|++|+..++.|.+.|. +|+ +. |.+ .+.+.+.++. +.... ++.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~Ga----kVVaVs-D~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e 276 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGG----KIVAVS-DITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDD 276 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCcc
Confidence 3466899999999999999999999998 776 55 765 5554333331 22222 2233
Q ss_pred h-hccCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCc
Q 024121 68 V-VEYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (272)
Q Consensus 68 ~-~~~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~ 129 (272)
+ ..+||+++-|--...+ .+..+++ .-++|+-..++-....-.+.+. .+-+-+.|..
T Consensus 277 ~l~~~~DvliP~Al~~~I~~~na~~i-----~ak~I~egAN~p~t~ea~~~L~-~rGI~~~PD~ 334 (410)
T PLN02477 277 ILVEPCDVLIPAALGGVINKENAADV-----KAKFIVEAANHPTDPEADEILR-KKGVVVLPDI 334 (410)
T ss_pred ceeccccEEeeccccccCCHhHHHHc-----CCcEEEeCCCCCCCHHHHHHHH-HCCcEEEChH
Confidence 3 3489999988544433 3333443 3457776655433333334443 2334444543
No 388
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.83 E-value=0.048 Score=46.30 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~A----tVtic-hs~T--------------~nl~~~~~~ADIvI~AvGk~~~i 214 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHA----TVTIA-HSRT--------------ADLAGEVGRADILVAAIGKAELV 214 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 345689999988 6689999999998887 89988 5432 244567889999999994 4433
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+||++
T Consensus 215 ~~------~~ik~gaiVIDv 228 (282)
T PRK14182 215 KG------AWVKEGAVVIDV 228 (282)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236799999986
No 389
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.83 E-value=0.19 Score=38.99 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----H---HHHH----HHHcC--ceeecCchhhhccCCE
Q 024121 10 SFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNL----K---RRDA----FESIG--VKVLSDNNAVVEYSDV 74 (272)
Q Consensus 10 ~~~IgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~---~~~~----l~~~g--~~~~~~~~~~~~~aDi 74 (272)
..||+|||= +++..+++..+.+-|. .+.+. .... . -.+. +.+.| +.++.+..++++++|+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM----EVVLI-APEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADV 76 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS----EEEEE-SSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SE
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC----EEEEE-CCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCE
Confidence 578999993 8999999999999998 88877 5433 1 1111 12234 5677888899999999
Q ss_pred EEEeeCc
Q 024121 75 VVFSVKP 81 (272)
Q Consensus 75 vil~v~~ 81 (272)
|+.-.-.
T Consensus 77 vy~~~~~ 83 (158)
T PF00185_consen 77 VYTDRWQ 83 (158)
T ss_dssp EEEESSS
T ss_pred EEEcCcc
Confidence 9887643
No 390
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.81 E-value=0.082 Score=48.45 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=59.0
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeecC--chhhhccCCE
Q 024121 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDV 74 (272)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDi 74 (272)
|..+|-.. +.++|.|||.|.++..=++.|++.|. +|+++ .+.- +..+.+.+.| +..... ..+.++++++
T Consensus 1 m~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga----~v~vi-sp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~l 75 (457)
T PRK10637 1 MDHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAGA----RLTVN-ALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWL 75 (457)
T ss_pred CCeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEE
Confidence 66677764 45899999999999999999999998 99998 6542 3344454433 332211 1344789999
Q ss_pred EEEeeCcccHHHHH
Q 024121 75 VVFSVKPQVVKDVA 88 (272)
Q Consensus 75 vil~v~~~~~~~v~ 88 (272)
||.|+.+..+..-+
T Consensus 76 v~~at~d~~~n~~i 89 (457)
T PRK10637 76 AIAATDDDAVNQRV 89 (457)
T ss_pred EEECCCCHHHhHHH
Confidence 99999887665444
No 391
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.80 E-value=0.04 Score=50.36 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cCceeec--CchhhhccCCEEEEee
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~aDivil~v 79 (272)
..-.|.|||.|..|.++|+.|.+.|+ +|+++ |..+. ..++|.+ .|+.+.. ...+.+.++|+||..-
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGI----PFAVM-DSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCC----eEEEE-eCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 34579999999999999999999999 99999 86542 2334555 3776632 2345567899988773
No 392
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.80 E-value=0.016 Score=50.53 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=51.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhC------CCCCCCcE-EEEeCCCHHH-------HHHH---HHcC-cee--ec--Cchhh
Q 024121 11 FILGFIGAGKMAESIAKGVAKS------GVLPPDRI-CTAVHSNLKR-------RDAF---ESIG-VKV--LS--DNNAV 68 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~------g~~~~~~V-~v~~~r~~~~-------~~~l---~~~g-~~~--~~--~~~~~ 68 (272)
|||++||+|++|+.+++.|.+. |. .-+| .++ +++... .+++ .+.| +.. .. +..++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~--~l~VVaVs-ds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNN--GISVVSVS-DSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCC--CeEEEEEE-ECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 5899999999999999998873 22 1133 344 654311 1121 1111 110 11 33333
Q ss_pred h-ccCCEEEEeeCcc-cHHHHHHHhchhcCCCCEEEEEcC
Q 024121 69 V-EYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 69 ~-~~aDivil~v~~~-~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
. .++|+||-|++.. .-.....-+.+.+..|+-||+...
T Consensus 78 l~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNK 117 (326)
T PRK06392 78 FEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANK 117 (326)
T ss_pred hcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCH
Confidence 2 3689999999742 212223334445667877886543
No 393
>PRK09242 tropinone reductase; Provisional
Probab=95.78 E-value=0.1 Score=43.58 Aligned_cols=91 Identities=10% Similarity=0.014 Sum_probs=57.2
Q ss_pred CCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC--
Q 024121 4 FPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-- 80 (272)
Q Consensus 4 ~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-- 80 (272)
+++.+..+++-|.|. |.+|..++..|.+.|+ +|.+. +|+.++.+++.+. ..+...+.++.++.+.
T Consensus 3 ~~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~ 70 (257)
T PRK09242 3 HRWRLDGQTALITGASKGIGLAIAREFLGLGA----DVLIV-ARDADALAQARDE-------LAEEFPEREVHGLAADVS 70 (257)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-------HHhhCCCCeEEEEECCCC
Confidence 344556678888876 8999999999999999 99999 9998776654331 0110112344444432
Q ss_pred -cccHHHHHHHhchhcCCCCEEEEEcC
Q 024121 81 -PQVVKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 81 -~~~~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.+++...++++...+.+-..+|++.+
T Consensus 71 ~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 71 DDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 33455666665544444456776543
No 394
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.77 E-value=0.04 Score=48.23 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ .... .+..+.+++||+||.++. |..+
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~A----TVTic-Hs~T--------------~nl~~~~r~ADIVIsAvGkp~~i 288 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDA----TVSIV-HSRT--------------KNPEEITREADIIISAVGQPNMV 288 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCC----eEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcC
Confidence 446688999988 6789999999998887 89988 5432 245677899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 289 ~~------d~vK~GAvVIDV 302 (364)
T PLN02616 289 RG------SWIKPGAVVIDV 302 (364)
T ss_pred CH------HHcCCCCEEEec
Confidence 22 236799999986
No 395
>PRK09186 flagellin modification protein A; Provisional
Probab=95.77 E-value=0.091 Score=43.73 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEe--e-Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS--V-KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~--v-~~~~ 83 (272)
+..+++-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+. .........+.++. + .+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~----~v~~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~d~~~ 69 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG----IVIAA-DIDKEALNELLES-------LGKEFKSKKLSLVELDITDQES 69 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ecChHHHHHHHHH-------HHhhcCCCceeEEEecCCCHHH
Confidence 34578888876 8999999999999999 99999 9998776655431 00000111222222 2 3445
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++++++...+.+=..+|++.
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 70 LEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHHcCCccEEEECC
Confidence 6677776654443334677654
No 396
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.77 E-value=0.032 Score=52.01 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=35.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+.++|.|.|. |.+|..+++.|++.|+ +|.++ .|+.++.+.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~----~Vval-~Rn~ekl~~l~ 121 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF----RVRAG-VRSAQRAESLV 121 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 3456778876 9999999999999999 99999 99988776543
No 397
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.76 E-value=0.2 Score=41.17 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=56.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHc-CceeecC--chhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLSD--NNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~-g~~~~~~--~~~~~~~aDivil~v~~~~~~ 85 (272)
.++|-|||.|.++..=+..|++.|. +|+++ .... +.+..+.+. .+..... ..+-++++++||.|+.+..+.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA----~VtVV-ap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN 99 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGC----YVYIL-SKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLN 99 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHH
Confidence 5689999999999999999999998 99999 6543 234445443 3433221 123367899999999888877
Q ss_pred HHHHHhc
Q 024121 86 DVAMQIR 92 (272)
Q Consensus 86 ~v~~~l~ 92 (272)
.-+.+..
T Consensus 100 ~~I~~~a 106 (223)
T PRK05562 100 NKIRKHC 106 (223)
T ss_pred HHHHHHH
Confidence 6665554
No 398
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.71 E-value=0.052 Score=46.19 Aligned_cols=73 Identities=15% Similarity=0.380 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK- 80 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~----g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~- 80 (272)
....+++.|||- ...|.+++.-|.+. +. .|+++ +... .+..+.+++||+||.++.
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~A----tVtvc-hs~T--------------~~l~~~~~~ADIvV~AvG~ 210 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNA----TVTLL-HSQS--------------ENLTEILKTADIIIAAIGV 210 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCC
Confidence 456789999988 56899999999887 55 88888 5432 245677899999999994
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|..+.. ..+++|.+||++
T Consensus 211 p~~i~~------~~ik~GavVIDv 228 (287)
T PRK14181 211 PLFIKE------EMIAEKAVIVDV 228 (287)
T ss_pred cCccCH------HHcCCCCEEEEe
Confidence 443321 236799999986
No 399
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.70 E-value=0.041 Score=46.44 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=56.5
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccHH
Q 024121 8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~~ 85 (272)
...+++.|||-++ .|.+|+.-|...++ .|+++ +... .+..+.+++||+|+.++ .|..+.
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~~~na----TVtvc-Hs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~ 214 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLLNANA----TVTVC-HSRT--------------KDLASITKNADIVVVAVGKPHFIK 214 (283)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHhCCC----EEEEE-cCCC--------------CCHHHHhhhCCEEEEecCCccccc
Confidence 4568899999965 69999999999998 99999 5443 25567789999999999 565554
Q ss_pred HHHHHhchhcCCCCEEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~ 104 (272)
.+.++++.++|+.
T Consensus 215 ------~d~vk~gavVIDV 227 (283)
T COG0190 215 ------ADMVKPGAVVIDV 227 (283)
T ss_pred ------cccccCCCEEEec
Confidence 2446789999986
No 400
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.69 E-value=0.048 Score=52.30 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=49.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeecC-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLSD- 64 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~~- 64 (272)
+...++|.|||.|..|.+.|..|.+.|+ +|+++ ++++. ..+.+.+.|+.+..+
T Consensus 190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~----~Vtv~-e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~ 264 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGH----DVTIF-DANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNT 264 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 3456799999999999999999999999 99999 76532 123444466654211
Q ss_pred -------chhhhccCCEEEEee
Q 024121 65 -------NNAVVEYSDVVVFSV 79 (272)
Q Consensus 65 -------~~~~~~~aDivil~v 79 (272)
..+.....|.||+++
T Consensus 265 ~v~~dv~~~~~~~~~DaVilAt 286 (652)
T PRK12814 265 VFGRDITLEELQKEFDAVLLAV 286 (652)
T ss_pred cccCccCHHHHHhhcCEEEEEc
Confidence 223334699999998
No 401
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.63 E-value=0.079 Score=46.19 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=53.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-----------------------ceee--cCc
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-----------------------VKVL--SDN 65 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-----------------------~~~~--~~~ 65 (272)
||||+|+|++|..+.+.+.+.+.-+..+|...++... +....+.+++ +.+. .++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 6999999999999999988753101116665534332 3333443311 1111 123
Q ss_pred hhh-h--ccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 66 NAV-V--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 66 ~~~-~--~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
.+. . .+.|+||.|++.....+...+ ++..|..+|.++++
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~SaP 122 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFSHP 122 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEecCC
Confidence 222 1 479999999987766555543 34456566656544
No 402
>PRK06182 short chain dehydrogenase; Validated
Probab=95.61 E-value=0.11 Score=43.82 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=36.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+.++|.|.|+ |-+|.++++.|.+.|+ +|++. +|++++.+.+..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~----~V~~~-~r~~~~l~~~~~ 45 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY----TVYGA-ARRVDKMEDLAS 45 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4578888886 9999999999999999 99999 999887765543
No 403
>PRK08223 hypothetical protein; Validated
Probab=95.61 E-value=0.12 Score=43.99 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
..+|.|||+|-+|+.++..|..+|. .+++++ |.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV---G~i~lv-D~D 60 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI---GKFTIA-DFD 60 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC---CeEEEE-eCC
Confidence 4689999999999999999999997 366666 543
No 404
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.60 E-value=0.15 Score=43.33 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHHcCceeecCch---hhh------ccCCEEEEe
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVLSDNN---AVV------EYSDVVVFS 78 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~~g~~~~~~~~---~~~------~~aDivil~ 78 (272)
...++.|+|+|.+|...+..+...|. + |++. ++++++.+.+++.|+...-+.. +.+ ...|++|-|
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~----~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~ 194 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA----ARVVAA-DPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF 194 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEE-CCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC
Confidence 34689999999999998888888887 6 8888 9999888877777764322211 111 246888887
Q ss_pred eC-cccHHHHHHHhchhcCCCCEEEEE
Q 024121 79 VK-PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 79 v~-~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
+. +..+...++- ++++..++..
T Consensus 195 ~G~~~~~~~~~~~----l~~~G~iv~~ 217 (280)
T TIGR03366 195 SGATAAVRACLES----LDVGGTAVLA 217 (280)
T ss_pred CCChHHHHHHHHH----hcCCCEEEEe
Confidence 74 3334444333 3444455543
No 405
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.58 Score=40.36 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cC----ce-----------------eec
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IG----VK-----------------VLS 63 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g----~~-----------------~~~ 63 (272)
.++.++-++|+|...--+|.-+..+|. .++.++ +|-.-+-+.+.+ .+ ++ ...
T Consensus 2 ~~m~~vLllGtGpvaIQlAv~l~~h~d---~~lg~~-~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~k 77 (431)
T COG4408 2 HNMLPVLLLGTGPVAIQLAVDLSAHGD---ARLGLY-NRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIK 77 (431)
T ss_pred CcccceeEeecCcHHHHHHHHHHhccC---ceeecc-CCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHh
Confidence 456789999999999999999988774 277788 774333222322 11 10 123
Q ss_pred CchhhhccCCEEEEeeCcccHHHHHHHhc-hhcCCCCEEEEEcCCCCHH-HHHH---HhC-CCCEEEEc-----------
Q 024121 64 DNNAVVEYSDVVVFSVKPQVVKDVAMQIR-PLLSRKKLLVSVAAGVKLK-DLQE---WTG-HSRFIRVM----------- 126 (272)
Q Consensus 64 ~~~~~~~~aDivil~v~~~~~~~v~~~l~-~~l~~~~~iis~~~~~~~~-~l~~---~~~-~~~~~~~~----------- 126 (272)
++.++..+-+.+|+|||.++..+|+.+|- ..+..=+.+|-+++.+... -+++ .++ ++.++.+.
T Consensus 78 d~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~ 157 (431)
T COG4408 78 DLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDA 157 (431)
T ss_pred hHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecc
Confidence 45666778899999999999999998863 2233333444334444433 1222 122 33344321
Q ss_pred --cCchhhhcCCceEEEeCCCCCHHHHHHHHHHhhhcCCe
Q 024121 127 --PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (272)
Q Consensus 127 --p~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~G~~ 164 (272)
|++.-..+-..-+...+...+....+.+..++...|-.
T Consensus 158 ~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~ 197 (431)
T COG4408 158 EQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGID 197 (431)
T ss_pred cCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCc
Confidence 22211111111223334455667788899999999944
No 406
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.60 E-value=0.049 Score=47.41 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.+. .|+++ .... .+..+..++||+||.++. |..+
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~A----TVTic-Hs~T--------------~nl~~~~~~ADIvIsAvGkp~~v 271 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDA----TVSTV-HAFT--------------KDPEQITRKADIVIAAAGIPNLV 271 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCC----EEEEE-cCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 456789999988 5679999999988887 89888 5432 245677899999999994 4443
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 272 ~~------d~vk~GavVIDV 285 (345)
T PLN02897 272 RG------SWLKPGAVVIDV 285 (345)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 235799999986
No 407
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.59 E-value=0.13 Score=45.17 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=53.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CC-CCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc--cCCEEEEeeCcccHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAK-SG-VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~-~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDivil~v~~~~~~ 85 (272)
..++.|+|+|.+|...+..+.+ .| . +|++. ++++++.+.+++.+..... .+..+ ..|+||=|+......
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~----~vi~~-~~~~~k~~~a~~~~~~~~~--~~~~~~~g~d~viD~~G~~~~~ 236 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPES----KLVVF-GKHQEKLDLFSFADETYLI--DDIPEDLAVDHAFECVGGRGSQ 236 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCC----cEEEE-eCcHhHHHHHhhcCceeeh--hhhhhccCCcEEEECCCCCccH
Confidence 4689999999999977776654 33 4 78889 9999888776654433211 11112 478888888532222
Q ss_pred HHHHHhchhcCCCCEEEE
Q 024121 86 DVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis 103 (272)
..+.+....++++..++.
T Consensus 237 ~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 237 SAINQIIDYIRPQGTIGL 254 (341)
T ss_pred HHHHHHHHhCcCCcEEEE
Confidence 233333344556555553
No 408
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.59 E-value=0.054 Score=49.44 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cCceeecC--chhhhccCCEEEEee--C
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLSD--NNAVVEYSDVVVFSV--K 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~~--~~~~~~~aDivil~v--~ 80 (272)
..++|.|+|.|..|.+.++.|.+.|+ +|.++ |.++. ..+++.+ .|+.+... ..+...++|+||.+. |
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGA----EVAAY-DAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 45789999999999999999999999 99999 87543 2344544 37665322 233346899999885 5
Q ss_pred cc
Q 024121 81 PQ 82 (272)
Q Consensus 81 ~~ 82 (272)
++
T Consensus 79 ~~ 80 (445)
T PRK04308 79 ER 80 (445)
T ss_pred CC
Confidence 43
No 409
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.58 E-value=0.028 Score=50.89 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=49.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH----HHHHHHcCceeec--CchhhhccCCEEEEe--eC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKVLS--DNNAVVEYSDVVVFS--VK 80 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~aDivil~--v~ 80 (272)
..+||.|+|+|.=|.+.++.|.+.|+ +|+++ |.++.. ...+...++.+.. ...+....+|+|+.. +|
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~----~v~v~-D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGA----EVTVS-DDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIP 80 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCC----eEEEE-cCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCC
Confidence 37899999999999999999999999 99999 865543 1222235554432 122456789999987 35
Q ss_pred cc
Q 024121 81 PQ 82 (272)
Q Consensus 81 ~~ 82 (272)
++
T Consensus 81 ~~ 82 (448)
T COG0771 81 PT 82 (448)
T ss_pred CC
Confidence 44
No 410
>PRK05717 oxidoreductase; Validated
Probab=95.58 E-value=0.17 Score=42.21 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
|+.-.-..+.+++-|.|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+
T Consensus 1 ~~~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~ 50 (255)
T PRK05717 1 MSEPNPGHNGRVALVTGAARGIGLGIAAWLIAEGW----QVVLA-DLDRERGSKV 50 (255)
T ss_pred CCCCCcccCCCEEEEeCCcchHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHH
Confidence 344334444567888875 9999999999999999 99999 8887665544
No 411
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=95.57 E-value=0.062 Score=44.41 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=43.2
Q ss_pred EEEEeCCCHHHHHHHHH-cCceeecCchhhh-ccCCEEEEeeCcccHHHHHHHhch
Q 024121 40 ICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDVAMQIRP 93 (272)
Q Consensus 40 V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDivil~v~~~~~~~v~~~l~~ 93 (272)
+.+| |+++++++.+.+ .|+....+.++++ .+.|+|++|+|++...+...+...
T Consensus 5 vaV~-D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~ 59 (229)
T TIGR03855 5 AAVY-DRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK 59 (229)
T ss_pred EEEE-CCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH
Confidence 4577 999999988877 7788888888875 579999999999988887766543
No 412
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.056 Score=46.28 Aligned_cols=73 Identities=12% Similarity=0.246 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-C
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-K 80 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~----g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~ 80 (272)
....+++.|||- ...|.+++.-|.+. +. .|+++ .+.. .+..+.+++||+||.++ .
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvVsAvGk 218 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANA----TVTIV-HTRS--------------KNLARHCQRADILIVAAGV 218 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCC----EEEEe-cCCC--------------cCHHHHHhhCCEEEEecCC
Confidence 456689999988 67899999999887 45 88888 5432 24567789999999999 4
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|..+.. ..+++|.+||++
T Consensus 219 p~~i~~------~~ik~gavVIDv 236 (297)
T PRK14168 219 PNLVKP------EWIKPGATVIDV 236 (297)
T ss_pred cCccCH------HHcCCCCEEEec
Confidence 444321 236799999986
No 413
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.53 E-value=0.081 Score=43.76 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=35.7
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
+++.++|.|.| +|.+|.++++.|.+.|+ +|++. +|++++...+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~ 46 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA----EVIVV-DICGDDAAAT 46 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 34567899998 59999999999999999 99999 9987655443
No 414
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.52 E-value=0.13 Score=43.92 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=50.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHHc--Ccee--
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFESI--GVKV-- 61 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~----~~l~~~--g~~~-- 61 (272)
...+|.|+|+|-+|..++++|..+|. .+|+++ |.+. .|+ +++++. .+.+
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGV---g~itI~-D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGV---KSVTLH-DTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCC---CeEEEE-cCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34689999999999999999999997 367777 5432 111 233332 2322
Q ss_pred ec--CchhhhccCCEEEEeeCcccHHHHHHHh
Q 024121 62 LS--DNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (272)
Q Consensus 62 ~~--~~~~~~~~aDivil~v~~~~~~~v~~~l 91 (272)
.. ...+.+.+.|+|+.|..+......+.++
T Consensus 94 ~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~ 125 (286)
T cd01491 94 STGPLTTDELLKFQVVVLTDASLEDQLKINEF 125 (286)
T ss_pred EeccCCHHHHhcCCEEEEecCCHHHHHHHHHH
Confidence 22 1346678999999887543333333333
No 415
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.52 E-value=0.033 Score=48.97 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=45.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCceee-cCc-------hhhhccCCEEEEe
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN-------NAVVEYSDVVVFS 78 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~~-------~~~~~~aDivil~ 78 (272)
+|||.|.|+ |-+|+.++..|++. |+ +|++. +|+.++...+.. .++... .|. .++++++|+||=+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~----~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW----EVYGM-DMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC----eEEEE-eCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 368999996 99999999999986 68 99999 887765544433 233321 121 2456789999943
No 416
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.52 E-value=0.054 Score=51.03 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=49.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHHHHHHcCceeecC-
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRDAFESIGVKVLSD- 64 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~~l~~~g~~~~~~- 64 (272)
+...++|.|||.|..|.+.+..|.+.|+ +|+++ ++.+ .+.+.+.+.|+....+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~----~V~v~-e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~ 208 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH----AVTIF-EAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV 208 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4456899999999999999999999999 89999 7532 2334455567653211
Q ss_pred -------chhhhccCCEEEEeeC
Q 024121 65 -------NNAVVEYSDVVVFSVK 80 (272)
Q Consensus 65 -------~~~~~~~aDivil~v~ 80 (272)
..+.-...|+||+++-
T Consensus 209 ~~~~~~~~~~~~~~~D~Vi~AtG 231 (564)
T PRK12771 209 RVGEDITLEQLEGEFDAVFVAIG 231 (564)
T ss_pred EECCcCCHHHHHhhCCEEEEeeC
Confidence 1222346899999983
No 417
>PLN02427 UDP-apiose/xylose synthase
Probab=95.52 E-value=0.031 Score=49.89 Aligned_cols=69 Identities=9% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHc-------Cceee-cC------chhhh
Q 024121 6 IPAESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-------GVKVL-SD------NNAVV 69 (272)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~-------g~~~~-~~------~~~~~ 69 (272)
.+.+.|||.|.|. |-+|+.+++.|++. |+ +|.+. +|+.++...+... +++.. .| ..+++
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~l-~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~ 84 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLAL-DVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLI 84 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEEE-ecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHh
Confidence 4455689999985 99999999999998 58 99999 8877665544321 22221 11 23456
Q ss_pred ccCCEEEEee
Q 024121 70 EYSDVVVFSV 79 (272)
Q Consensus 70 ~~aDivil~v 79 (272)
+++|+||=+.
T Consensus 85 ~~~d~ViHlA 94 (386)
T PLN02427 85 KMADLTINLA 94 (386)
T ss_pred hcCCEEEEcc
Confidence 6899988654
No 418
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.48 E-value=0.021 Score=47.61 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHH-cCceeecCc-hhhhccCCEEEEe
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFES-IGVKVLSDN-NAVVEYSDVVVFS 78 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-----~~l~~-~g~~~~~~~-~~~~~~aDivil~ 78 (272)
...+-+++|+|+ |.+|+++++-|..++. .+... -|+.+.. ..+.+ .|..+..++ .+.....++|+++
T Consensus 164 dlsqatvaivGa~G~Ia~~Iar~la~~~~----~~~ll-~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vA 238 (351)
T COG5322 164 DLSQATVAIVGATGDIASAIARWLAPKVG----VKELL-LRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVA 238 (351)
T ss_pred CHHHCeEEEecCCchHHHHHHHHhccccC----EEEEe-cccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEe
Confidence 344568999998 9999999998887765 55566 6665443 33333 343332333 3445566677777
Q ss_pred eCcccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 79 v~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
..|.-.. +.. .+++|+..|+| .|.+.
T Consensus 239 s~~~g~~-I~p---q~lkpg~~ivD--~g~P~ 264 (351)
T COG5322 239 SMPKGVE-IFP---QHLKPGCLIVD--GGYPK 264 (351)
T ss_pred ecCCCce-ech---hhccCCeEEEc--CCcCc
Confidence 6443321 222 23689988886 45443
No 419
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.44 E-value=0.13 Score=42.74 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=34.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
|+|-|+|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH----KVIAT-GRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHH
Confidence 57888885 9999999999999999 99999 99988766554
No 420
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.071 Score=45.67 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-C
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-K 80 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~----g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~ 80 (272)
....+++.|||- ...|.+++.-|.+. +. .|+++ .... .+..+.+++||+||.++ +
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a----TVtvc-hs~T--------------~~l~~~~~~ADIvIsAvGk 214 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNA----TVTVC-HSRT--------------DDLAAKTRRADIVVAAAGV 214 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCC
Confidence 346689999988 66899999998876 55 88888 5432 24567789999999999 5
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|..+.. ..+++|.+||++
T Consensus 215 p~~i~~------~~ik~gaiVIDv 232 (297)
T PRK14167 215 PELIDG------SMLSEGATVIDV 232 (297)
T ss_pred cCccCH------HHcCCCCEEEEc
Confidence 554332 235799999986
No 421
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.42 E-value=0.053 Score=46.14 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=44.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee----ecC---chhhh------cc-CCEEE
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV----LSD---NNAVV------EY-SDVVV 76 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~----~~~---~~~~~------~~-aDivi 76 (272)
+|.|+|+ |.+|+.+++.|.+.|+ +|.+. .|++++... .++.. ..| ..+++ +. +|.||
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~----~V~~~-~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV----PFLVA-SRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC----cEEEE-eCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 4788877 9999999999999999 99999 999875431 22211 012 22333 45 89999
Q ss_pred EeeCc
Q 024121 77 FSVKP 81 (272)
Q Consensus 77 l~v~~ 81 (272)
++.++
T Consensus 73 ~~~~~ 77 (285)
T TIGR03649 73 LVAPP 77 (285)
T ss_pred EeCCC
Confidence 88764
No 422
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.42 E-value=0.074 Score=45.42 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~ 84 (272)
....+++.|||- ...|.+++.-|.+.|+.....|+++ +... .+..+.+++||+||.++. |..+
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvc-hs~T--------------~nl~~~~~~ADIvIsAvGkp~~i 218 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVC-HSRS--------------KNLKKECLEADIIIAALGQPEFV 218 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEe-cCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 456789999988 6789999999988741001178888 5432 245677889999999994 5543
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
.. ..+++|.+|||+
T Consensus 219 ~~------~~vk~gavVIDv 232 (293)
T PRK14185 219 KA------DMVKEGAVVIDV 232 (293)
T ss_pred CH------HHcCCCCEEEEe
Confidence 31 236799999986
No 423
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.11 Score=42.90 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+++++.|.|. |.+|..+++.|++.|+ +|++. +|++++.+.+.+. ..+ ...++.++.+. ++.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~ 70 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW----DLALV-ARSQDALEALAAE-------LRS--TGVKAAAYSIDLSNPEAI 70 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--CCCcEEEEEccCCCHHHH
Confidence 3467888875 9999999999999999 99999 9998766554321 001 11234444332 3345
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..+++.+.....+=..+|++.
T Consensus 71 ~~~~~~~~~~~~~id~lv~~a 91 (241)
T PRK07454 71 APGIAELLEQFGCPDVLINNA 91 (241)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 555655544333334667654
No 424
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.19 Score=42.46 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=36.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
++.+++-|.|. |-+|..+++.|.+.|+ +|.+. +|++++.+...
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 48 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA----AVMIV-GRNPDKLAAAA 48 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 45688999986 9999999999999999 99999 89887665443
No 425
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.38 E-value=0.024 Score=49.09 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=46.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEEee
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v 79 (272)
|+|.|.|. |-+|+.++..|.+.|+ +|.+. +|++++...+...++... .+..++++++|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE----EVRVL-VRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC----EEEEE-EecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 57899975 9999999999999999 99999 888765444433343321 12234566889998775
No 426
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.37 E-value=0.04 Score=50.08 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=45.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHH---H-HH-HcCceeec-CchhhhccCCEEEEee
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRD---A-FE-SIGVKVLS-DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~---~-l~-~~g~~~~~-~~~~~~~~aDivil~v 79 (272)
||.|||.|..|.++|+.|.+.|+ +|+++ |..+. ... . +. ..|+.+.. ...+.+.++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~----~V~~s-D~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA----EVTVT-DLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC----EEEEE-eCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 58999999999999999999999 99999 86543 111 1 22 24776532 2244567899988874
No 427
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.36 E-value=0.095 Score=43.06 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
.++|.|+|. |.+|..+++.|.+.|+ +|.+. +|++++.+++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~ 47 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY----KVAIT-ARDQKELEEAA 47 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC----EEEEe-eCCHHHHHHHH
Confidence 467889975 9999999999999999 99999 99987766553
No 428
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.35 E-value=0.13 Score=43.13 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=51.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceee-------cCchhhhccCCEEEEeeC
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDivil~v~ 80 (272)
|+|.+.|. |.+|+.+++.|.+.|+ +|.+. .|++++...+. .++.+. .+....+++.|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~----~v~~~-~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH----EVRAA-VRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC----EEEEE-EeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 57888865 9999999999999999 99999 99999988877 555542 223456778999998887
No 429
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.35 E-value=0.068 Score=48.04 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=51.5
Q ss_pred CCCCeEEEEcccHHHHHH--HHHHHhCCCCCCCcEEEEeCCCHHHHH-------HHHH-cC----ceeecCchhhhccCC
Q 024121 8 AESFILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRD-------AFES-IG----VKVLSDNNAVVEYSD 73 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~l--a~~l~~~g~~~~~~V~v~~~r~~~~~~-------~l~~-~g----~~~~~~~~~~~~~aD 73 (272)
|+.+||+|||.|.-..+- ..-|...--++..++.++ |.++++.+ ++.+ .| +..+.|..+++++||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~-Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALY-DIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEE-eCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 467899999999887653 222223333455689999 99988765 2222 33 345678899999999
Q ss_pred EEEEeeCcc
Q 024121 74 VVVFSVKPQ 82 (272)
Q Consensus 74 ivil~v~~~ 82 (272)
+|+.++.+.
T Consensus 80 fVi~~~rvG 88 (442)
T COG1486 80 FVITQIRVG 88 (442)
T ss_pred EEEEEEeeC
Confidence 999998554
No 430
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.35 E-value=0.021 Score=47.91 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhc-cCCEEE
Q 024121 17 GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVV 76 (272)
Q Consensus 17 G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDivi 76 (272)
|+|.+|+++...|.+.|| +|++. .|++.+.+......+...+...+... .+|+||
T Consensus 6 gTGlIG~~L~~~L~~~gh----~v~il-tR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 6 GTGLIGRALTARLRKGGH----QVTIL-TRRPPKASQNLHPNVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred cccchhHHHHHHHHhCCC----eEEEE-EcCCcchhhhcCccccccchhhhcccCCCCEEE
Confidence 779999999999999999 99999 99987765443333332233344444 699988
No 431
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=95.32 E-value=0.18 Score=44.08 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=53.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH----cC-----c--------------eee--c
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES----IG-----V--------------KVL--S 63 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~----~g-----~--------------~~~--~ 63 (272)
+||||.|+|+||..+.+.+.+.+. .++...++. +.+.+..|.+ +| + .+. .
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~---~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPE---LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 799999999999999999886542 156554242 4555555554 22 1 111 0
Q ss_pred Cchh-hhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEEEcCC
Q 024121 64 DNNA-VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 64 ~~~~-~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
++.+ ..++.|+||.|+....-++.... ++..|...|..++.
T Consensus 80 ~~~~~~w~gvDiVle~tG~~~s~~~a~~---hl~aGak~V~iSap 121 (334)
T PRK08955 80 AIADTDWSGCDVVIEASGVMKTKALLQA---YLDQGVKRVVVTAP 121 (334)
T ss_pred ChhhCCccCCCEEEEccchhhcHHHHHH---HHHCCCEEEEECCC
Confidence 2222 13479999999866654444432 23455555555443
No 432
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.31 E-value=0.12 Score=43.16 Aligned_cols=85 Identities=12% Similarity=0.111 Sum_probs=53.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++.|.|. |.+|.++++.|++.|+ +|.+. +|++++.+.+.+. ..+ ...++.++.. .++.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------i~~--~~~~~~~~~~D~~~~~~ 73 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA----EVILN-GRDPAKLAAAAES-------LKG--QGLSAHALAFDVTDHDA 73 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCceEEEEEccCCCHHH
Confidence 35578989976 9999999999999999 99999 9998766544320 000 0123333332 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.++++++...+.+-..+|+..+
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666665544444456776543
No 433
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.31 E-value=0.14 Score=42.44 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
..+++.|+|. |.+|..+++.|.+.|+ +|++. +|++++.+.+... + .. ..++.++.. .++.+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~---~~~~~~~~~D~~~~~~~ 68 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA----RVVVT-DRNEEAAERVAAE-I------LA---GGRAIAVAADVSDEADV 68 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------hc---CCeEEEEECCCCCHHHH
Confidence 4578999986 9999999999999999 99999 9998776554331 0 00 223333333 23445
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..++.++.+...+=..||++.
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~a 89 (251)
T PRK07231 69 EAAVAAALERFGSVDILVNNA 89 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 556655543333334666654
No 434
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.30 E-value=0.28 Score=44.58 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC----------CCHHHHHHHHH-c-----------CceeecC
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFES-I-----------GVKVLSD 64 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~----------r~~~~~~~l~~-~-----------g~~~~~~ 64 (272)
..+.+||+|.|.|++|+..++.|.+.|. +|+...| .+.+.+.+.++ . +.... +
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~Ga----kVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~ 303 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGA----KVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-E 303 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-C
Confidence 3466899999999999999999999998 7664425 45554443332 1 22221 3
Q ss_pred chhhhc-cCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCc
Q 024121 65 NNAVVE-YSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (272)
Q Consensus 65 ~~~~~~-~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~ 129 (272)
.+++.. +|||++-|-....+ .+-..++.+ ..-++|+...++-....-.+.+. .+-+-+.|..
T Consensus 304 ~~~i~~~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~-~rGI~~vPD~ 367 (445)
T PRK09414 304 GGSPWSVPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFL-EAGVLFAPGK 367 (445)
T ss_pred CccccccCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHH-HCCcEEECch
Confidence 334333 79999999876554 344445532 13457776655433333333443 2334445553
No 435
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.13 Score=44.22 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=51.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~ 85 (272)
.++|-|.|. |-+|.++++.|.+.|+ +|.+. +|+.++.+.+.+. ..+ ...++.++.+ .++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~----~Vi~~-~R~~~~l~~~~~~-------l~~--~~~~~~~~~~Dl~d~~~v~ 105 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA----TVVAV-ARREDLLDAVADR-------ITR--AGGDAMAVPCDLSDLDAVD 105 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHH
Confidence 367888876 9999999999999999 99999 9998776655431 000 0122323322 234566
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
++++.+...+.+=.++|++.
T Consensus 106 ~~~~~~~~~~g~id~li~~A 125 (293)
T PRK05866 106 ALVADVEKRIGGVDILINNA 125 (293)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 66666554443435677654
No 436
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.25 E-value=0.031 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024121 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (272)
|..-+.++..++|+|||+|.-|-+.|+.|.+.|+ +|+++ .+
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~----~v~vf-E~ 41 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAGLVAARELRREGH----TVVVF-ER 41 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHHHHHHHHHHhcCC----eEEEE-ec
Confidence 4444566667899999999999999999999998 77777 54
No 437
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.13 Score=42.46 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=53.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
+.+++.|+|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+. ... ...++.++.+. ++.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dl~~~~~~ 71 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA----TVAFN-DGLAAEARELAAA-------LEA--AGGRAHAIAADLADPASV 71 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHH
Confidence 4578889986 9999999999999999 99999 9988776654321 000 12234444432 3345
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.+++++.....+-..+|++.+
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 72 QRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 5566555443333346776643
No 438
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.065 Score=49.09 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=46.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HH----HHHHHcCceeecC--ch-----hhhccCCEEEEee
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RR----DAFESIGVKVLSD--NN-----AVVEYSDVVVFSV 79 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~----~~l~~~g~~~~~~--~~-----~~~~~aDivil~v 79 (272)
||.|||.|..|.+.|+.|.+.|+ +|.++ |+++. .. ..+.+.|+.+... .. +...+.|+|+.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW----EVVVS-DRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 68999999999999999999999 99999 87542 22 2355567765321 11 2456799998864
No 439
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.21 E-value=0.028 Score=50.30 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=32.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (272)
++.++|.|||.|..|.++|..|.+.|+ +|+++ +|.++
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~----~v~v~-Er~~~ 38 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGI----KVKLL-EQAAE 38 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCC----cEEEE-eeCcc
Confidence 345789999999999999999999999 99999 77653
No 440
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.16 Score=42.85 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+.++|-|.|+ |.+|..+++.|.+.|+ +|.+. +|++++.+++.
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~ 46 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA----RVAIG-DLDEALAKETA 46 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHH
Confidence 4567888876 9999999999999999 99999 99988776554
No 441
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=95.18 E-value=1.1 Score=38.40 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=59.4
Q ss_pred eEE-EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc--HHHHH
Q 024121 12 ILG-FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV--VKDVA 88 (272)
Q Consensus 12 ~Ig-iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~--~~~v~ 88 (272)
|++ |.|.|..|..-+..|...|. .|++. ..+|-.+-+..=.|.++. +.+|+++..|+++.++-..+ ..+-+
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~----~VivT-EiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~dii~~~H~ 288 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGA----RVIVT-EIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCKDIITGEHF 288 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCc----EEEEe-ccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCcchhhHHHH
Confidence 444 55999999999999999998 99999 888754333333788874 67899999999999985443 34444
Q ss_pred HHhchhcCCCCEEEE
Q 024121 89 MQIRPLLSRKKLLVS 103 (272)
Q Consensus 89 ~~l~~~l~~~~~iis 103 (272)
++ ++.+.++++
T Consensus 289 ~~----mk~d~IvCN 299 (434)
T KOG1370|consen 289 DQ----MKNDAIVCN 299 (434)
T ss_pred Hh----CcCCcEEec
Confidence 44 445666654
No 442
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.17 E-value=0.22 Score=43.60 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecC-----chhhhc---cCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-----NNAVVE---YSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-----~~~~~~---~aDivil~v~~ 81 (272)
..+|.|+|+|.+|...+..+...|. .+|++. ++++++.+.+++.|+...-+ ..+... ..|+||-|+..
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA---AEIVCA-DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---cEEEEE-eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 4689999999999988887777776 247788 99999988888788643211 112211 36888888754
Q ss_pred -ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 -QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 -~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
..+...++ .++++..++..
T Consensus 246 ~~~~~~~~~----~l~~~G~iv~~ 265 (343)
T PRK09880 246 PSSINTCLE----VTRAKGVMVQV 265 (343)
T ss_pred HHHHHHHHH----HhhcCCEEEEE
Confidence 23444433 34455566644
No 443
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.16 E-value=0.27 Score=40.26 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-cccHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKD 86 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~-~~~~~~ 86 (272)
+.++|.|.|. |.+|..+++.|.+.|+ +|.+. +|++++..+..+. .. ....+++..-+. .+.+..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~ 71 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA----RVALI-GRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARR 71 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC----eEEEE-eCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHH
Confidence 4578999976 9999999999999999 99999 9988665443220 00 011223322232 345666
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++.....+-..|++..
T Consensus 72 ~~~~~~~~~~~~d~vi~~a 90 (239)
T PRK12828 72 AVDEVNRQFGRLDALVNIA 90 (239)
T ss_pred HHHHHHHHhCCcCEEEECC
Confidence 6666554443445666653
No 444
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.16 E-value=0.047 Score=47.36 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=56.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC-C-----CCCcEE-EEeCCCHHHHHHHHHcC-ceeecCc-----hhhhc--cC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGV-L-----PPDRIC-TAVHSNLKRRDAFESIG-VKVLSDN-----NAVVE--YS 72 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~-~-----~~~~V~-v~~~r~~~~~~~l~~~g-~~~~~~~-----~~~~~--~a 72 (272)
|+.++|+++|+|.+|+.+++-|.+++- + ...+|. +. +|+....+.+.-.+ .....+. .+.+. +.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVA-DRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDI 79 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEE-eccchhcccccccchhhheecccccccHhhhccccC
Confidence 456899999999999999999987532 0 011232 33 66554433111111 1122222 33333 56
Q ss_pred CEEEEeeCc--ccHHHHHHHhchhcCCCCEEEEE
Q 024121 73 DVVVFSVKP--QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 73 Divil~v~~--~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|+|+-+++. ...++ ++.+...+..++.||+.
T Consensus 80 dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTa 112 (333)
T COG0460 80 DVVVELVGGDVEPAEP-ADLYLKALENGKHVVTA 112 (333)
T ss_pred CEEEecCcccCCchhh-HHHHHHHHHcCCeEECC
Confidence 789988865 34555 56666777888888854
No 445
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.11 E-value=0.16 Score=42.97 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
|.-+++..+.+++.|.|+ |-+|.++++.|.+.|+ +|.+. .|+.++.+.+
T Consensus 1 ~~~~~~~~~~~~vlVtGa~g~iG~~la~~L~~~G~----~V~~~-~r~~~~~~~~ 50 (274)
T PRK07775 1 MPRFEPHPDRRPALVAGASSGIGAATAIELAAAGF----PVALG-ARRVEKCEEL 50 (274)
T ss_pred CCCCCCCCCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 344555555677888875 9999999999999999 99988 8887665443
No 446
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.082 Score=44.84 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG 58 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g 58 (272)
++++-|.|+ |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~----~Vi~~-~r~~~~~~~l~~~~ 48 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW----RVFAT-CRKEEDVAALEAEG 48 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCC
Confidence 457888887 9999999999999999 99999 99988877765543
No 447
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.09 E-value=0.032 Score=48.07 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=59.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC---HHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN---LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~---~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~ 84 (272)
..++|+| |+ |..|..|...|.+.++ +..+++++ ... ..+.-.+....+.+..-..+..++.|++|. .+.+..
T Consensus 2 ~~~~iAi-GATg~VG~~~l~~Leer~f-pv~~l~l~-~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s 77 (322)
T PRK06901 2 ATLNIAI-AAEFELSEKLLEALEQSDL-EIEQISIV-EIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQ 77 (322)
T ss_pred CcceEEE-ecCcHHHHHHHHHHHhcCC-chhheeec-ccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHH
Confidence 4578999 98 9999999999999887 66667776 322 111111111122232222345688999999 777766
Q ss_pred HHHHHHhchhcCCCCEEEEEcCC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~~ 107 (272)
++...... ..|.+|||.++.
T Consensus 78 ~~~ap~a~---~aG~~VIDnSsa 97 (322)
T PRK06901 78 AEHLAQAA---EAGCIVIDLYGI 97 (322)
T ss_pred HHHHHHHH---HCCCEEEECChH
Confidence 66655433 578899987653
No 448
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.09 E-value=0.19 Score=43.08 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCch
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN 66 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~ 66 (272)
...+++|.|+|..|.+.+.+-...|. ++|... |.|+++.++.++.|+.-+-++.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GA---srIIgv-DiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGA---SRIIGV-DINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCc---ccEEEE-ecCHHHHHHHHhcCcceecChh
Confidence 34689999999999999999998886 589999 9999999999988876444443
No 449
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.08 E-value=0.18 Score=42.63 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=63.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEE-eCCCHH--HHHHHHHcCcee------ecCchhhhcc-CC-EEEEee
Q 024121 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA-VHSNLK--RRDAFESIGVKV------LSDNNAVVEY-SD-VVVFSV 79 (272)
Q Consensus 12 ~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~--~~~~l~~~g~~~------~~~~~~~~~~-aD-ivil~v 79 (272)
||.|.|+ |+||+..++.+.+.++ ++... .++... ....+...++.+ ..++.++... +| ++|=-+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT 77 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGL----EIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT 77 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCC----EEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC
Confidence 7889998 9999999999888777 76643 143321 222222234555 5566666665 88 766666
Q ss_pred CcccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 80 ~~~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
.|+.+.+.+.... ..+..+|.-++|.+.+++++..
T Consensus 78 ~P~~~~~n~~~~~---~~gv~~ViGTTG~~~~~~~~l~ 112 (275)
T TIGR02130 78 HPSAVNDNAAFYG---KHGIPFVMGTTGGDREALAKLV 112 (275)
T ss_pred ChHHHHHHHHHHH---HCCCCEEEcCCCCCHHHHHHHH
Confidence 6777666654433 3445556566788887776653
No 450
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=95.08 E-value=0.066 Score=44.65 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=63.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------cCc----eeecCchhhhccCCEEEEeeCc
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------IGV----KVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------~g~----~~~~~~~~~~~~aDivil~v~~ 81 (272)
-..++|.|..+........+.-- .-.+|.+| +|+++.++++++ ..+ ..+.+.++++..+|+|+.|++.
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~~p-slreVrIw-nht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls 217 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKLIP-SLREVRIW-NHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS 217 (333)
T ss_pred EEEEEcccchhHHHHHHHHHhcc-cceEEEee-cCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc
Confidence 46789999999988777666421 13489999 999998887766 123 2356678889999999999864
Q ss_pred ccHHHHHHHhchhcCCCCEEEEEcCCCCH
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~~~~~~~ 110 (272)
.. .++ ....++|| +-|+..++.+.
T Consensus 218 te--Pil--fgewlkpg-thIdlVGsf~p 241 (333)
T KOG3007|consen 218 TE--PIL--FGEWLKPG-THIDLVGSFKP 241 (333)
T ss_pred CC--cee--eeeeecCC-ceEeeeccCCc
Confidence 32 111 11235677 56777777655
No 451
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.08 E-value=0.11 Score=43.24 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=52.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |.+|..++..|++.|+ +|.+. +|++++.+.+.+. ..+ ..+++.++-. .++.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dl~~~~~~ 71 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA----AVAIA-DLNQDGANAVADE-------INK--AGGKAIGVAMDVTNEDAV 71 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHH-------HHh--cCceEEEEECCCCCHHHH
Confidence 4567888877 9999999999999999 99999 9998766554431 000 0123333332 23345
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.++++++.....+-..+|++.+
T Consensus 72 ~~~~~~~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 72 NAGIDKVAERFGSVDILVSNAG 93 (262)
T ss_pred HHHHHHHHHHcCCCCEEEECCc
Confidence 5666655444444456777643
No 452
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.06 E-value=0.14 Score=44.28 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=53.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHH--cCceee----
Q 024121 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFES--IGVKVL---- 62 (272)
Q Consensus 12 ~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~----~~l~~--~g~~~~---- 62 (272)
||.|||+|.+|+.++++|...|. .+++++ |.+. .|+ +.+.+ ..+.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv---g~ItIv-D~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~ 76 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF---GEIHII-DLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA 76 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC---CeEEEE-cCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 68999999999999999999997 367777 5422 122 22222 123221
Q ss_pred --cC---chhhhccCCEEEEeeCcccHHHHHHHhchhcCCCCEEEE
Q 024121 63 --SD---NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (272)
Q Consensus 63 --~~---~~~~~~~aDivil~v~~~~~~~v~~~l~~~l~~~~~iis 103 (272)
.+ ..+.+++.|+|+.|+.....+..+.++... .+..+|+
T Consensus 77 ~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~--~~ip~I~ 120 (312)
T cd01489 77 NIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLA--ADVPLIE 120 (312)
T ss_pred cCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHH--CCCCEEE
Confidence 11 235678999999998665555555554422 3344554
No 453
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.06 E-value=0.24 Score=43.18 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=57.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCc-hhhhccCCEEEEeeCcccHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-NAVVEYSDVVVFSVKPQVVKDVA 88 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-~~~~~~aDivil~v~~~~~~~v~ 88 (272)
..++.|.|+|.+|...+......|. .|++. ++++++.+.+++.|+...-+. ....+..|+++.+.... +.+
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~----~vi~~-~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~---~~~ 237 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGA----TVHVM-TRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG---GLV 237 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH---HHH
Confidence 4689999999999988877777787 88888 899999888888887533221 11123578877776432 233
Q ss_pred HHhchhcCCCCEEEEE
Q 024121 89 MQIRPLLSRKKLLVSV 104 (272)
Q Consensus 89 ~~l~~~l~~~~~iis~ 104 (272)
......++++..++..
T Consensus 238 ~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 238 PPALEALDRGGVLAVA 253 (329)
T ss_pred HHHHHhhCCCcEEEEE
Confidence 3333445566666643
No 454
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.14 Score=42.76 Aligned_cols=83 Identities=17% Similarity=0.146 Sum_probs=53.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++.|+|. |.+|..+++.|.+.|+ +|.+. +|+++..+.+.+.. .+..+.++.. .++.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~ 72 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA----RVHVC-DVSEAALAATAARL-----------PGAKVTATVADVADPAQ 72 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHH-----------hcCceEEEEccCCCHHH
Confidence 45578999976 9999999999999999 99999 99887665554311 1112233322 2334
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+.++++++...+.+-..||+..+
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 55555555444444456666543
No 455
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.05 E-value=0.085 Score=46.48 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=48.9
Q ss_pred CCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCceee-cC------chhhhcc
Q 024121 5 PIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVL-SD------NNAVVEY 71 (272)
Q Consensus 5 ~~~~~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~~~-~~------~~~~~~~ 71 (272)
.+..+.|||.|.| +|-+|+.+++.|++.|+ +|.+. +|+.++.+.+.. .++... .| ..+++++
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGY----TVHAT-LRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKG 79 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcC
Confidence 3455778999998 59999999999999999 99988 888765544332 122221 12 2344567
Q ss_pred CCEEEEee
Q 024121 72 SDVVVFSV 79 (272)
Q Consensus 72 aDivil~v 79 (272)
.|.||-+.
T Consensus 80 ~d~Vih~A 87 (353)
T PLN02896 80 CDGVFHVA 87 (353)
T ss_pred CCEEEECC
Confidence 89888665
No 456
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.05 E-value=0.22 Score=41.62 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCC---C----CCcEEEEeCCC-----------HHHHHHHHH--cCceeecCch
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVL---P----PDRICTAVHSN-----------LKRRDAFES--IGVKVLSDNN 66 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~---~----~~~V~v~~~r~-----------~~~~~~l~~--~g~~~~~~~~ 66 (272)
.....||.|.|+|.-|..+++.|...+.- + ..+++++ |+. +.+ +.+.+ ..-....++.
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~v-D~~Gll~~~r~~l~~~~-~~~~~~~~~~~~~~~L~ 99 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXV-DRKGLLVKNRKETCPNE-YHLARFANPERESGDLE 99 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEE-CCCCeEeCCCCccCHHH-HHHHHHcCcccccCCHH
Confidence 34567999999999999999999886530 0 1256666 552 111 12111 1112235788
Q ss_pred hhhc--cCCEEEEee--CcccHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 67 AVVE--YSDVVVFSV--KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 67 ~~~~--~aDivil~v--~~~~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|+++ ++|++|=.. +.-..+++++.+..+. +..+|.-++++.+
T Consensus 100 eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 100 DAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred HHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcC-CCCEEEECCCcCC
Confidence 8888 889887443 3334678888877653 5667888887765
No 457
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.00 E-value=0.25 Score=41.39 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+...+. ..+.....++.++.+ .++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA----SVAIC-GRDEERLASAEAR-------LREKFPGARLLAARCDVLDEAD 73 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHH-------HHhhCCCceEEEEEecCCCHHH
Confidence 34566777776 8899999999999999 99999 9998776654321 011011223433433 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
+.++++++...+.+=.++|++.
T Consensus 74 v~~~~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 6666666654443334677653
No 458
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.96 E-value=0.19 Score=41.84 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
.++|-|.|. |.+|.++++.|.+.|+ +|.++ +|++++.+.+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~ 52 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA----HVLVN-GRNAATLEAAV 52 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHH
Confidence 467888866 9999999999999999 99999 99987655443
No 459
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.21 Score=41.94 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEe--e-Cccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS--V-KPQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~--v-~~~~ 83 (272)
++.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ... ...++.++. + .++.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~D~~~~~~ 73 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA----DVLIA-ARTESQLDEVAEQ-------IRA--AGRRAHVVAADLAHPEA 73 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHH
Confidence 45678888876 7899999999999999 99999 9998776554431 000 011222222 2 2345
Q ss_pred HHHHHHHhchhcCCCCEEEEEcC
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~~ 106 (272)
+..+++++...+.+=..+|++.+
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666544434357777643
No 460
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.92 E-value=0.27 Score=41.05 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=35.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+++-|+|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW----RVGAY-DINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHH
Confidence 56888875 9999999999999999 99999 999887766644
No 461
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.92 E-value=0.16 Score=42.31 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.++|-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+. ... ...++.++.+ .++.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~ 69 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA----DVVLA-ARTAERLDEVAAE-------IDD--LGRRALAVPTDITDEDQC 69 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-------HHH--hCCceEEEecCCCCHHHH
Confidence 4567888875 9999999999999999 99999 9998766554321 000 0122333333 23345
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
..+++++...+.+-..+|++.
T Consensus 70 ~~~~~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 70 ANLVALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 666665544333334666654
No 462
>PRK08017 oxidoreductase; Provisional
Probab=94.91 E-value=0.091 Score=43.71 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=36.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI 57 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~ 57 (272)
++|.|.|+ |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~~~ 45 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY----RVLAA-CRKPDDVARMNSL 45 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHhHHHHhC
Confidence 47899998 9999999999999999 99999 9998877655443
No 463
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.90 E-value=0.12 Score=46.96 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=45.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHHcCceeec--CchhhhccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~~g~~~~~--~~~~~~~~aDivil~v 79 (272)
.++|.|||.|..|.+.++.|.+.|+ +|+++ |..+.. .+++. .|+.+.. ...+.+++.|+||..-
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~----~v~~~-D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGV----TPRVI-DTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASP 73 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECC
Confidence 5689999999999999999999999 99999 864322 23443 3765532 2334466789777653
No 464
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=94.90 E-value=0.082 Score=40.62 Aligned_cols=42 Identities=7% Similarity=0.213 Sum_probs=30.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCC-CHHHHHHHHH
Q 024121 11 FILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHS-NLKRRDAFES 56 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r-~~~~~~~l~~ 56 (272)
+||+|+|+|+||..+++.+.+. +. ++...+++ +++....+.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~----~lvai~d~~~~~~~a~ll~ 44 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDI----EVVAINDLTDPETLAHLLK 44 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC----EEEEeecCCCHHHHHHHhc
Confidence 5899999999999999988754 33 66554364 6666666655
No 465
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.15 Score=42.90 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=49.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee-CcccHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVK 85 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v-~~~~~~ 85 (272)
++.++|-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.. .+..++..=+ .++.++
T Consensus 2 ~~~~~vlVtGasg~iG~~~a~~l~~~g~----~V~~~-~r~~~~~~~~---------------~~~~~~~~D~~d~~~~~ 61 (270)
T PRK06179 2 SNSKVALVTGASSGIGRATAEKLARAGY----RVFGT-SRNPARAAPI---------------PGVELLELDVTDDASVQ 61 (270)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEE-eCChhhcccc---------------CCCeeEEeecCCHHHHH
Confidence 34567888875 9999999999999999 99999 8987553211 1111111111 334566
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
.+++++...+.+-.++|++.
T Consensus 62 ~~~~~~~~~~g~~d~li~~a 81 (270)
T PRK06179 62 AAVDEVIARAGRIDVLVNNA 81 (270)
T ss_pred HHHHHHHHhCCCCCEEEECC
Confidence 66666554444445677654
No 466
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.89 E-value=0.17 Score=46.63 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024121 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (272)
Q Consensus 8 ~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (272)
...++|.|||.|..|.+.|..|.+.|+ +|+++ ++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~----~V~vi-e~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH----KVTVF-ERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ecC
Confidence 345799999999999999999999999 99999 764
No 467
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.88 E-value=0.25 Score=41.32 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=50.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccHHH
Q 024121 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (272)
Q Consensus 11 ~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~~~ 86 (272)
|++-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+++.+. + .+ ..++.++.. .++.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l------~~---~~~~~~~~~Dv~d~~~~~~ 65 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA----RVVIS-SRNEENLEKALKE-L------KE---YGEVYAVKADLSDKDDLKN 65 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-H------Hh---cCCceEEEcCCCCHHHHHH
Confidence 57888876 8899999999999999 99999 9998776554331 0 00 012222222 2345666
Q ss_pred HHHHhchhcCCCCEEEEEc
Q 024121 87 VAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 87 v~~~l~~~l~~~~~iis~~ 105 (272)
+++++...+.+=.++|+..
T Consensus 66 ~~~~~~~~~g~id~li~na 84 (259)
T PRK08340 66 LVKEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHHHhcCCCCEEEECC
Confidence 6666654443334667653
No 468
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.87 E-value=0.42 Score=40.57 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhC----CCCCC----CcEEEEeCCC----------HHHHHHHHHc-CceeecCch
Q 024121 6 IPAESFILGFIGAGKMAESIAKGVAKS----GVLPP----DRICTAVHSN----------LKRRDAFESI-GVKVLSDNN 66 (272)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~la~~l~~~----g~~~~----~~V~v~~~r~----------~~~~~~l~~~-g~~~~~~~~ 66 (272)
......||.|.|+|.-|..+++.|... |. +. .+++++ |+. .+....+.+. .-....++.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~-~~eeA~~~i~~v-D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~ 98 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGL-SEEEARKKIWLV-DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLL 98 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCC-ChhhccCeEEEE-cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHH
Confidence 344567999999999999999999886 64 21 367777 663 1111222221 111235788
Q ss_pred hhhc--cCCEEEEee-Ccc-cHHHHHHHhchhcCCCCEEEEEcCCCC
Q 024121 67 AVVE--YSDVVVFSV-KPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (272)
Q Consensus 67 ~~~~--~aDivil~v-~~~-~~~~v~~~l~~~l~~~~~iis~~~~~~ 109 (272)
|+++ ++|++|=+. .+. .-+++++.+..+. +..+|.-++++.+
T Consensus 99 e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 99 EVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC-CCCEEEECCCcCC
Confidence 9999 889888554 334 4578888887654 6678888888765
No 469
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.36 Score=39.94 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|+ |.+|..+++.|.+.|+ +|.+. .|+.+..+...+. +. ....+.++.. .++.+
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~---------~~~~~~~~~~D~~~~~~~ 68 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA----RVVVA-DRDAEAAERVAAA-IA---------AGGRAFARQGDVGSAEAV 68 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC----eEEEe-cCCHHHHHHHHHH-Hh---------cCCeEEEEEcCCCCHHHH
Confidence 4567888876 9999999999999999 99999 8987765544321 00 1122222222 33456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
.++++++.+.+.+=..+|++.+
T Consensus 69 ~~~~~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 69 EALVDFVAARWGRLDVLVNNAG 90 (252)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6677666554444456777643
No 470
>PRK06914 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.21 Score=42.28 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=34.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+.+++-|.| +|-+|.++++.|.+.|+ +|.++ +|+++..+.+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 44 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY----LVIAT-MRNPEKQENLL 44 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHH
Confidence 345677776 59999999999999999 99999 89887765543
No 471
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.84 E-value=0.13 Score=43.92 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHh----CCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC-
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAK----SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK- 80 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~----~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~- 80 (272)
....+++.|||- ...|.+++.-|.+ .+. .|+++ +.+. .+..+.+++||+||.++.
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~A----tVt~~-hs~t--------------~~l~~~~~~ADIVI~AvG~ 214 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANA----TVTVC-HSRT--------------PDLAEECREADFLFVAIGR 214 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCC----EEEEE-eCCc--------------hhHHHHHHhCCEEEEecCC
Confidence 445689999988 6689999999988 555 88888 5432 245677899999999994
Q ss_pred cccHHHHHHHhchhcCCCCEEEEE
Q 024121 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 81 ~~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
|..+.. ..++++.++||+
T Consensus 215 p~li~~------~~vk~GavVIDV 232 (286)
T PRK14184 215 PRFVTA------DMVKPGAVVVDV 232 (286)
T ss_pred CCcCCH------HHcCCCCEEEEe
Confidence 333221 234789999986
No 472
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.32 Score=40.55 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
++.++|-|+|. |.+|.++++.|.+.|+ +|.+. +|++.+.+.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~ 48 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA----TVVVG-DIDPEAGKAAA 48 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 45678999988 9999999999999999 99999 99877655443
No 473
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.82 E-value=0.18 Score=42.13 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=52.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. + .. ....+.++.. .++.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-i------~~--~~~~~~~~~~Dl~d~~~i 76 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA----RVVLS-ARKAEELEEAAAH-L------EA--LGIDALWIAADVADEADI 76 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-H------Hh--cCCeEEEEEccCCCHHHH
Confidence 3477888875 9999999999999999 99999 9988766544321 0 00 0122333332 23456
Q ss_pred HHHHHHhchhcCCCCEEEEEcC
Q 024121 85 KDVAMQIRPLLSRKKLLVSVAA 106 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~~ 106 (272)
...++++.....+=..+|++.+
T Consensus 77 ~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 77 ERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666665544434457777643
No 474
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.81 E-value=0.071 Score=48.00 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=44.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhh--ccCCEEEEe--eCcc
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV--EYSDVVVFS--VKPQ 82 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~aDivil~--v~~~ 82 (272)
|+|.|+|+|.-|.+.++.|. .|+ +|+++ |..+... .+.+.|+... . .+.. +++|+||.. +|++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~----~V~~~-D~~~~~~-~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~ 67 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFG----GVDIF-DDKFTES-HKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPS 67 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCC----eEEEE-cCCCCcc-chhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCC
Confidence 68999999999999999999 999 99999 8653322 1233466553 2 2223 468988876 3544
No 475
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.79 E-value=0.4 Score=43.04 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=46.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ecCc--hhh-----hccCCEEEEeeCc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--NAV-----VEYSDVVVFSVKP 81 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~--~~~-----~~~aDivil~v~~ 81 (272)
...+-|+|.|.+|..+++.|.+.|+ ++.+. +.+. .+...+.|..+ ..|+ .+. +++|+.|++++++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~----~vvVI-d~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~d 312 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ----AVTVI-VPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDN 312 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC----CEEEE-ECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCC
Confidence 3468999999999999999999988 88888 6653 23333334322 2221 222 4589999988876
Q ss_pred ccHH
Q 024121 82 QVVK 85 (272)
Q Consensus 82 ~~~~ 85 (272)
+...
T Consensus 313 D~~N 316 (393)
T PRK10537 313 DADN 316 (393)
T ss_pred hHHH
Confidence 6533
No 476
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.78 E-value=0.068 Score=47.62 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=42.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCcee-ecC---chhhhccCCEEEE
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKV-LSD---NNAVVEYSDVVVF 77 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~-~~~---~~~~~~~aDivil 77 (272)
+++|||||.|..|..|+....+.|+ +|.++ +.++.. ...+...-+.. ..| ..+.++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~----~v~~~-d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGY----KVIVL-DPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-eCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4689999999999999999999999 99999 876543 22222211111 122 2345667887643
No 477
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=94.77 E-value=0.37 Score=36.07 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=72.2
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCcccHH
Q 024121 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~~~ 85 (272)
.++|+++|+ .+-+.-.++.|.++|| +|+=. |....- +.+ +|-.+..+..|+-..-|+|-+-.+++.+.
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY----~ViPV-NP~~~~-~ei--LG~k~y~sL~dIpe~IDiVdvFR~~e~~~ 87 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGY----RVIPV-NPKLAG-EEI--LGEKVYPSLADIPEPIDIVDVFRRSEAAP 87 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCC----EEEee-Ccccch-HHh--cCchhhhcHHhCCCCCcEEEEecChhhhH
Confidence 478999999 6788889999999999 98877 653221 111 57777888888888999999999999999
Q ss_pred HHHHHhchhcCCCCEEEEEcCCCCHHHHHHHh
Q 024121 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~ 117 (272)
++.++.... +.-++...-|+..+...+.+
T Consensus 88 ~i~~eal~~---~~kv~W~QlGi~n~ea~~~~ 116 (140)
T COG1832 88 EVAREALEK---GAKVVWLQLGIRNEEAAEKA 116 (140)
T ss_pred HHHHHHHhh---CCCeEEEecCcCCHHHHHHH
Confidence 999876542 24455566677655544433
No 478
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.75 E-value=0.28 Score=42.50 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=51.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~ 84 (272)
..+++-|.|+ |-+|.++++.|.+.|+ +|++. .|+.++.++..+. ..+......+.++.+. .+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~----~Vil~-~R~~~~~~~~~~~-------l~~~~~~~~v~~~~~Dl~d~~sv 80 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA----EVILP-VRNRAKGEAAVAA-------IRTAVPDAKLSLRALDLSSLASV 80 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHHhCCCCceEEEEecCCCHHHH
Confidence 3456666665 8999999999999999 99999 9998776654330 1111112344455443 3345
Q ss_pred HHHHHHhchhcCCCCEEEEE
Q 024121 85 KDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~ 104 (272)
+.+++++.....+=.++|+.
T Consensus 81 ~~~~~~~~~~~~~iD~li~n 100 (313)
T PRK05854 81 AALGEQLRAEGRPIHLLINN 100 (313)
T ss_pred HHHHHHHHHhCCCccEEEEC
Confidence 66666654433333456654
No 479
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.74 E-value=0.32 Score=40.74 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|+.++.+++.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~l~~ 47 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA----RVAVL-DKSAAGLQELEA 47 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4567777776 8899999999999999 99999 999877766543
No 480
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.74 E-value=0.3 Score=40.44 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=34.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 10 ~~~IgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
.+++-|.| .|.+|.++++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 43 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR----DLALC-ARRTDRLEELK 43 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 35677886 59999999999999998 99999 99987766554
No 481
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.74 E-value=0.29 Score=42.32 Aligned_cols=43 Identities=7% Similarity=0.175 Sum_probs=33.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEEEEeC-CCHHHHHHHHH
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVH-SNLKRRDAFES 56 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g--~~~~~~V~v~~~-r~~~~~~~l~~ 56 (272)
+.||+|=|.|+||...++.+.+.+ . +|...++ .+++....|.+
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~di----eVVaInd~t~~~~~A~Llk 46 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDI----EVVAINDLTDPDYLAHLLK 46 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCe----EEEEEecCCCHHHHHHHHh
Confidence 368999999999999999999876 4 7776645 45666555554
No 482
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.73 E-value=0.15 Score=43.75 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHh----CCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCc
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAK----SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~----~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~ 81 (272)
....+++.|||- ...|.+++.-|.+ .+. .|+++ ..+. .+..+.+++||+||.++..
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~a----tVt~~-hs~t--------------~~l~~~~~~ADIvI~Avg~ 216 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNC----TVTIC-HSAT--------------KDIPSYTRQADILIAAIGK 216 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCC----EEEEE-eCCc--------------hhHHHHHHhCCEEEEecCc
Confidence 445688999987 5679999988876 465 88887 5443 2346678999999999943
Q ss_pred ccHHHHHHHhchhcCCCCEEEEE
Q 024121 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (272)
Q Consensus 82 ~~~~~v~~~l~~~l~~~~~iis~ 104 (272)
..+ +. ...+++|.++|++
T Consensus 217 ~~l---i~--~~~vk~GavVIDV 234 (295)
T PRK14174 217 ARF---IT--ADMVKPGAVVIDV 234 (295)
T ss_pred cCc---cC--HHHcCCCCEEEEe
Confidence 322 21 1235799999987
No 483
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.19 Score=41.86 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+.+.+. + .+ ...++.++.. .++.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l------~~--~~~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA----QVAIA-ARHLDALEKLADE-I------GT--SGGKVVPVCCDVSQHQQV 73 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHH-H------Hh--cCCeEEEEEccCCCHHHH
Confidence 4567878876 8999999999999999 99999 9998776655431 0 00 0122322222 23456
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.++++++...+.+=..+|++.
T Consensus 74 ~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 666666554443334666653
No 484
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.72 E-value=0.03 Score=50.21 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024121 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (272)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (272)
.+.+.++|.|+|. |.+|+.+++.|++.|+ +|++. .|++.+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~----~V~~l-~R~~~~ 96 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY----NVVAV-AREKSG 96 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-Eechhh
Confidence 3455689999976 9999999999999999 99999 888754
No 485
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.28 Score=41.09 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCCeEEEEcc-c-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024121 9 ESFILGFIGA-G-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (272)
Q Consensus 9 ~~~~IgiIG~-G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (272)
+.+++-|.|. | -+|.++++.|.+.|+ +|.+. +|++++.+..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~----~V~~~-~~~~~~~~~~ 58 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA----RVVIS-DIHERRLGET 58 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHH
Confidence 4578889996 6 599999999999999 89999 8988766544
No 486
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.71 E-value=0.48 Score=43.00 Aligned_cols=113 Identities=11% Similarity=0.039 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEE--------EeC---CCHHHHHHHHH---------------c-Cc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT--------AVH---SNLKRRDAFES---------------I-GV 59 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v--------~~~---r~~~~~~~l~~---------------~-g~ 59 (272)
..+.+||+|-|.|++|+..|+.|.+.|. +|.. | + .+.++++.+.+ . +.
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~Ga----kvVavSD~~G~i~-d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga 299 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGA----KVVTISGPDGYIY-DPDGISGEKIDYMLELRASGNDIVAPYAEKFPGS 299 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEcCCceEE-CCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCC
Confidence 3466899999999999999999999998 7776 7 7 55555322221 1 32
Q ss_pred eeecCchhhh-ccCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccC
Q 024121 60 KVLSDNNAVV-EYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPN 128 (272)
Q Consensus 60 ~~~~~~~~~~-~~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~ 128 (272)
+.. +..+++ .+|||.+-|--...+ .+..+.|.. ..-++|+--.++.....-.+.+. .+-+-+.|.
T Consensus 300 ~~i-~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~--~~ak~V~EgAN~p~t~eA~~iL~-~rGI~~vPD 366 (445)
T PRK14030 300 TFF-AGKKPWEQKVDIALPCATQNELNGEDADKLIK--NGVLCVAEVSNMGCTAEAIDKFI-AAKQLFAPG 366 (445)
T ss_pred EEc-CCccceeccccEEeeccccccCCHHHHHHHHH--cCCeEEEeCCCCCCCHHHHHHHH-HCCCEEeCc
Confidence 322 233333 379999988654443 334444432 13457777666643333334443 123334454
No 487
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.66 E-value=0.11 Score=45.21 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=55.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeCccc
Q 024121 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~~~~ 83 (272)
.+++-+.|.|-.|..+|.++...|. +|.|+ ..+|-++-+..=.|.++. ..++++..+|++|.|+-..+
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA----~ViVt-EvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd 276 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD 276 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCC----eEEEE-ecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC
Confidence 4678888999999999999999998 99999 888865544444788885 46788999999999995544
No 488
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.28 Score=40.79 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=36.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
..++|-|.|. |-+|.++++.|.+.|+ +|++. .|++++.+.+.
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~ 50 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA----KVVLA-SRRVERLKELR 50 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence 4578889876 9999999999999999 99999 99988776554
No 489
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.24 Score=43.34 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=54.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---ccc
Q 024121 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (272)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~ 83 (272)
+..++|-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ...++.++.+. +++
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~----~Vvl~-~R~~~~l~~~~~~-------l~~--~g~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA----KVVLL-ARGEEGLEALAAE-------IRA--AGGEALAVVADVADAEA 71 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHH--cCCcEEEEEecCCCHHH
Confidence 45567888876 9999999999999999 99999 9998776654321 000 12344444432 345
Q ss_pred HHHHHHHhchhcCCCCEEEEEc
Q 024121 84 VKDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 84 ~~~v~~~l~~~l~~~~~iis~~ 105 (272)
++.+++++...+.+=.++|+..
T Consensus 72 v~~~~~~~~~~~g~iD~lInnA 93 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECC
Confidence 6666666654444445677654
No 490
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.62 E-value=0.14 Score=47.03 Aligned_cols=69 Identities=16% Similarity=0.059 Sum_probs=47.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHHcCceee-cCchhhhccCCEEEEee--Cc
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV--KP 81 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~~g~~~~-~~~~~~~~~aDivil~v--~~ 81 (272)
+.+||+|+|+|.=|.+.++.|.+.|. +|+++ |.++. ...++.+.+..+. ....+.+.++|+||..- |+
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~----~v~~~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~ 81 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLP----AQALT-LFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISP 81 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCC----EEEEE-cCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCC
Confidence 45789999999999999999999999 99999 85321 1223444222222 22345567899998874 54
Q ss_pred c
Q 024121 82 Q 82 (272)
Q Consensus 82 ~ 82 (272)
+
T Consensus 82 ~ 82 (468)
T PRK04690 82 Y 82 (468)
T ss_pred C
Confidence 4
No 491
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.61 E-value=0.049 Score=49.06 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024121 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (272)
Q Consensus 11 ~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (272)
.+|.|||.|.+|.+.|..|.+.|+ +|.++ +|+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~----~V~vl-e~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY----QVTVF-DRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCC
Confidence 589999999999999999999998 99999 8864
No 492
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=94.61 E-value=0.27 Score=40.75 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=36.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+...++|-|.|. |.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~----~Vi~~-~r~~~~~~~~~ 53 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA----TVILL-GRTEEKLEAVY 53 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC----cEEEE-eCCHHHHHHHH
Confidence 445677888855 9999999999999999 99999 99987765543
No 493
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.14 Score=46.60 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=46.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHH--HHHHHHHcCceeecC--chhhhccCCEEEEee
Q 024121 10 SFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK--RRDAFESIGVKVLSD--NNAVVEYSDVVVFSV 79 (272)
Q Consensus 10 ~~~IgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~~--~~~~~~~aDivil~v 79 (272)
.++|.|||.|..|.+-++.|++. |+ +|+++ |..+. ..+++.+ |+.+... ..+.+.++|+|+.+-
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~----~v~~~-D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~Sp 76 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQL----TVKVI-DTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNP 76 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCC----eEEEE-eCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECC
Confidence 36899999999999999999987 56 89999 86542 2234543 7765321 334467899888874
No 494
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.58 E-value=0.3 Score=40.97 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCC----------CHHHHHHH---HH-c------------Cc
Q 024121 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAF---ES-I------------GV 59 (272)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r----------~~~~~~~l---~~-~------------g~ 59 (272)
..+.+||.|.|.|++|+..++.|.+.|. +|+ +. |. +.+.+..+ .+ . +.
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Ga----kvvaVs-D~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a 109 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGA----KVVTLS-DSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTA 109 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCC
Confidence 4456899999999999999999999998 766 44 41 22222221 11 1 23
Q ss_pred eeecCchhhh-ccCCEEEEeeCcccH-HHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhCCCCEEEEccCc
Q 024121 60 KVLSDNNAVV-EYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (272)
Q Consensus 60 ~~~~~~~~~~-~~aDivil~v~~~~~-~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~~~~~~~~~p~~ 129 (272)
+.. ++++++ .+|||++-|--...+ .+..+.|.. ..-++|+...++-....-.+.+.. +-+.+.|..
T Consensus 110 ~~~-~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~t~~a~~~L~~-rGI~vvPD~ 177 (254)
T cd05313 110 KYF-EGKKPWEVPCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPCTAEAIEVFRQ-AGVLFAPGK 177 (254)
T ss_pred EEe-CCcchhcCCCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCCCHHHHHHHHH-CCcEEECch
Confidence 332 334443 489999998544443 334444431 134577766554333333344431 334444543
No 495
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.4 Score=39.55 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (272)
+.+++-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+++.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 47 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA----RVAIT-GRDPASLEAAR 47 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEe-cCCHHHHHHHH
Confidence 3467888876 9999999999999999 99999 99877665543
No 496
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=94.57 E-value=0.76 Score=41.70 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=46.8
Q ss_pred CeEEEEcccHHH-HHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeecCchhh-hccCCEEEEee
Q 024121 11 FILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAV-VEYSDVVVFSV 79 (272)
Q Consensus 11 ~~IgiIG~G~mG-~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~-~~~aDivil~v 79 (272)
.+|-|||-|-.| +++|.-|++.|| +|... |-... ..++|.+.|+.+.....+. +.+.|+|+...
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~----~VsGS-D~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~ 74 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGY----KVSGS-DLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSN 74 (459)
T ss_pred ceEEEEeeccccHHHHHHHHHhCCC----ceECc-cccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEec
Confidence 479999987777 568999999999 99998 76543 4567777898876443332 66777776664
No 497
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=94.57 E-value=0.16 Score=44.39 Aligned_cols=136 Identities=12% Similarity=0.053 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH-------c----Cc---------eeecCchhhhccCCEEE
Q 024121 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES-------I----GV---------KVLSDNNAVVEYSDVVV 76 (272)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~-------~----g~---------~~~~~~~~~~~~aDivi 76 (272)
||+.||..+..+|+ +++.. +.|..-++ .+.. . +. ....|.. -+.++|+++
T Consensus 1 MG~gia~~~~~~~i----~~vl~-~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~-~~~~~dmvi 74 (380)
T KOG1683|consen 1 MGAGIAIVFILAGI----RTVLV-DANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYT-GFANADMVI 74 (380)
T ss_pred CcchHHHHHHHcCC----cEEEE-eccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccc-cccccceec
Confidence 78999999999999 88888 77754322 1111 0 11 1122322 367899996
Q ss_pred EeeCc--ccHHHHHHHhchhcCCCCEEEEEcCCCCHHHHHHHhC-CCCEEEEccCchhhhcCCceEEEeCCCCCHHHHHH
Q 024121 77 FSVKP--QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGEL 153 (272)
Q Consensus 77 l~v~~--~~~~~v~~~l~~~l~~~~~iis~~~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (272)
-+|-- +-..+++.+|....++..++-+.++++++..+...+. ...+++.|-..|...-+-..++. ....+......
T Consensus 75 eav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~-~~~tS~~~iA~ 153 (380)
T KOG1683|consen 75 EAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIIL-ALYTSKLTIAT 153 (380)
T ss_pred cchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHH-hcCCCchHHHH
Confidence 66632 2345777777776666666667778888888776554 24566666555543322111111 12234444555
Q ss_pred HHHHhhhcCC
Q 024121 154 IGKLFGSVGK 163 (272)
Q Consensus 154 v~~ll~~~G~ 163 (272)
+-+.-...|+
T Consensus 154 Ain~~~~~gk 163 (380)
T KOG1683|consen 154 AINGGSPAGK 163 (380)
T ss_pred HHhcccccCC
Confidence 5555555555
No 498
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.57 E-value=0.33 Score=40.52 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC
Q 024121 9 ESFILGFIGAGKMAESIAKGVAKSG 33 (272)
Q Consensus 9 ~~~~IgiIG~G~mG~~la~~l~~~g 33 (272)
...||.|||+|.+|+.++.+|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 3568999999999999999999875
No 499
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.56 E-value=0.41 Score=40.14 Aligned_cols=80 Identities=11% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEee---CcccH
Q 024121 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (272)
Q Consensus 9 ~~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v---~~~~~ 84 (272)
+.+++-|.|. |-+|.++++.|.+.|+ +|.+. +|++++.+++.+.- ...+.++.+ ..+.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~~~ 67 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA----RVAIV-DIDADNGAAVAASL------------GERARFIATDITDDAAI 67 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHh------------CCeeEEEEecCCCHHHH
Confidence 4567878876 9999999999999999 99999 99987766554310 112323332 23345
Q ss_pred HHHHHHhchhcCCCCEEEEEc
Q 024121 85 KDVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 85 ~~v~~~l~~~l~~~~~iis~~ 105 (272)
.++++++...+.+=..+|+..
T Consensus 68 ~~~~~~~~~~~g~id~lv~~a 88 (261)
T PRK08265 68 ERAVATVVARFGRVDILVNLA 88 (261)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 666666544433334666653
No 500
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.55 E-value=0.35 Score=41.61 Aligned_cols=84 Identities=23% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeecCchhhhccCCEEEEeeC---cccHH
Q 024121 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVVK 85 (272)
Q Consensus 10 ~~~IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDivil~v~---~~~~~ 85 (272)
.++|-|.|. |-+|.++++.|.+.|+ +|.+. .|+.++.+...+. ..+.....++.++.+. .+.++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~----~vi~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~d~~~v~ 83 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA----HVVLA-VRNLDKGKAAAAR-------ITAATPGADVTLQELDLTSLASVR 83 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHHhCCCCceEEEECCCCCHHHHH
Confidence 356777765 9999999999999999 99998 8988765543220 0000112234343332 23455
Q ss_pred HHHHHhchhcCCCCEEEEEc
Q 024121 86 DVAMQIRPLLSRKKLLVSVA 105 (272)
Q Consensus 86 ~v~~~l~~~l~~~~~iis~~ 105 (272)
.+++++.....+=..+|++.
T Consensus 84 ~~~~~~~~~~~~iD~li~nA 103 (306)
T PRK06197 84 AAADALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHHHHHhhCCCCCEEEECC
Confidence 66666544333334666653
Done!