Query 024122
Match_columns 272
No_of_seqs 216 out of 1591
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 2.5E-55 5.3E-60 392.0 20.2 179 93-271 80-258 (275)
2 COG0740 ClpP Protease subunit 100.0 3.8E-54 8.2E-59 376.3 19.4 187 85-271 3-193 (200)
3 PRK14513 ATP-dependent Clp pro 100.0 9.3E-52 2E-56 363.8 21.7 177 95-271 17-193 (201)
4 PRK14514 ATP-dependent Clp pro 100.0 1.8E-51 4E-56 366.3 21.6 177 95-271 44-220 (221)
5 PRK12551 ATP-dependent Clp pro 100.0 2.4E-50 5.1E-55 353.9 21.3 177 95-271 15-191 (196)
6 CHL00028 clpP ATP-dependent Cl 100.0 2.9E-50 6.2E-55 354.4 21.7 177 95-271 20-197 (200)
7 PRK12552 ATP-dependent Clp pro 100.0 1.6E-50 3.4E-55 360.0 19.9 177 95-271 20-215 (222)
8 TIGR00493 clpP ATP-dependent C 100.0 7.5E-47 1.6E-51 330.6 21.4 176 95-270 16-191 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 4.8E-46 1E-50 327.0 21.0 178 94-271 12-189 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 1.1E-45 2.5E-50 325.1 21.9 187 85-271 7-197 (200)
11 PF00574 CLP_protease: Clp pro 100.0 4.2E-45 9.1E-50 315.2 15.4 177 95-271 6-182 (182)
12 PRK12553 ATP-dependent Clp pro 100.0 5E-44 1.1E-48 316.3 20.5 177 95-271 25-203 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 1.2E-43 2.5E-48 304.8 18.3 171 97-267 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 5.5E-43 1.2E-47 298.6 19.8 162 106-267 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 2.4E-33 5.1E-38 237.3 18.4 156 107-267 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 2.5E-31 5.5E-36 229.1 19.1 155 107-270 3-165 (172)
17 cd00394 Clp_protease_like Case 100.0 4.4E-31 9.5E-36 222.8 18.3 159 107-267 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 6.4E-28 1.4E-32 209.8 19.2 160 107-270 3-165 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 3.1E-26 6.8E-31 198.5 18.7 156 107-270 3-171 (178)
20 TIGR00706 SppA_dom signal pept 99.9 2E-21 4.4E-26 171.5 16.8 160 107-270 4-195 (207)
21 COG0616 SppA Periplasmic serin 99.9 1E-21 2.2E-26 184.0 15.5 161 107-270 63-262 (317)
22 cd07014 S49_SppA Signal peptid 99.9 6.4E-21 1.4E-25 164.0 16.4 144 118-270 23-169 (177)
23 cd07023 S49_Sppa_N_C Signal pe 99.9 8.2E-21 1.8E-25 167.3 16.2 160 107-269 4-199 (208)
24 TIGR00705 SppA_67K signal pept 99.8 2.4E-20 5.2E-25 187.4 17.9 160 107-269 312-510 (584)
25 cd07022 S49_Sppa_36K_type Sign 99.8 4E-20 8.6E-25 163.9 17.0 150 117-270 25-206 (214)
26 cd07019 S49_SppA_1 Signal pept 99.8 3.5E-19 7.6E-24 157.7 15.8 161 107-270 4-203 (211)
27 PRK10949 protease 4; Provision 99.8 3.2E-19 6.9E-24 180.0 17.6 161 107-270 330-529 (618)
28 PRK11778 putative inner membra 99.8 5.4E-18 1.2E-22 159.4 15.7 159 107-270 94-286 (330)
29 cd07018 S49_SppA_67K_type Sign 99.8 6.5E-18 1.4E-22 150.6 14.3 155 112-270 24-213 (222)
30 COG1030 NfeD Membrane-bound se 99.7 8.8E-17 1.9E-21 154.6 14.9 156 107-270 30-188 (436)
31 PF01972 SDH_sah: Serine dehyd 99.6 3.8E-14 8.2E-19 129.5 17.3 147 110-263 68-241 (285)
32 TIGR00705 SppA_67K signal pept 99.4 1.1E-12 2.4E-17 132.2 14.7 151 117-270 76-269 (584)
33 PF01343 Peptidase_S49: Peptid 99.4 2.7E-12 5.8E-17 108.5 10.7 109 159-270 2-140 (154)
34 PRK10949 protease 4; Provision 99.4 8.7E-12 1.9E-16 126.3 14.7 152 116-270 94-288 (618)
35 cd06558 crotonase-like Crotona 99.1 3E-09 6.5E-14 91.6 14.1 139 113-270 22-181 (195)
36 PRK05869 enoyl-CoA hydratase; 98.9 5.4E-08 1.2E-12 86.9 15.7 139 114-271 31-188 (222)
37 PRK06688 enoyl-CoA hydratase; 98.9 4.7E-08 1E-12 88.6 14.8 138 114-270 29-184 (259)
38 PRK08258 enoyl-CoA hydratase; 98.9 7.8E-08 1.7E-12 88.4 15.6 138 114-270 41-202 (277)
39 PRK06495 enoyl-CoA hydratase; 98.9 6.4E-08 1.4E-12 88.0 14.8 135 114-270 27-182 (257)
40 PRK03580 carnitinyl-CoA dehydr 98.8 1E-07 2.3E-12 86.8 15.0 139 114-271 26-183 (261)
41 PRK06143 enoyl-CoA hydratase; 98.8 1.1E-07 2.5E-12 86.4 14.8 137 114-270 31-187 (256)
42 PRK06190 enoyl-CoA hydratase; 98.8 1.9E-07 4.1E-12 85.3 15.8 138 114-270 28-182 (258)
43 COG3904 Predicted periplasmic 98.8 7.6E-08 1.7E-12 85.1 12.2 156 103-266 72-236 (245)
44 PRK07511 enoyl-CoA hydratase; 98.8 1.9E-07 4.2E-12 84.8 15.4 139 114-271 27-187 (260)
45 PRK11423 methylmalonyl-CoA dec 98.8 1.4E-07 3E-12 86.1 14.4 137 114-270 28-184 (261)
46 PRK09674 enoyl-CoA hydratase-i 98.8 1.4E-07 3E-12 85.7 14.2 139 114-271 26-181 (255)
47 PRK06210 enoyl-CoA hydratase; 98.8 1.4E-07 3E-12 86.3 14.2 138 114-270 30-196 (272)
48 PRK07110 polyketide biosynthes 98.8 2.4E-07 5.1E-12 84.0 15.4 139 114-271 29-183 (249)
49 PRK08138 enoyl-CoA hydratase; 98.8 2.4E-07 5.2E-12 84.4 15.4 139 114-271 32-187 (261)
50 PF00378 ECH: Enoyl-CoA hydrat 98.8 1.2E-07 2.6E-12 85.1 13.1 137 114-271 22-179 (245)
51 TIGR03210 badI 2-ketocyclohexa 98.8 2.3E-07 5.1E-12 84.3 14.9 138 114-270 26-182 (256)
52 PRK05809 3-hydroxybutyryl-CoA 98.8 1.9E-07 4.2E-12 84.8 14.3 136 114-270 28-185 (260)
53 PRK07658 enoyl-CoA hydratase; 98.8 2.3E-07 5E-12 84.1 14.6 139 114-271 25-183 (257)
54 PRK05981 enoyl-CoA hydratase; 98.8 2.3E-07 4.9E-12 84.7 14.6 139 114-271 28-192 (266)
55 PRK09076 enoyl-CoA hydratase; 98.8 3.3E-07 7E-12 83.4 15.4 139 114-271 26-184 (258)
56 PRK06023 enoyl-CoA hydratase; 98.8 2.1E-07 4.4E-12 84.4 14.0 138 114-270 30-185 (251)
57 PLN02600 enoyl-CoA hydratase 98.7 3.1E-07 6.8E-12 83.3 15.1 139 114-271 19-177 (251)
58 PRK08260 enoyl-CoA hydratase; 98.7 2.4E-07 5.3E-12 86.0 14.6 138 114-270 28-201 (296)
59 PLN02888 enoyl-CoA hydratase 98.7 3.6E-07 7.9E-12 83.6 15.4 138 114-270 34-187 (265)
60 PLN02921 naphthoate synthase 98.7 3.4E-07 7.4E-12 86.5 15.4 138 114-270 91-249 (327)
61 PLN02664 enoyl-CoA hydratase/d 98.7 3E-07 6.6E-12 84.4 14.6 138 114-270 32-199 (275)
62 PRK05980 enoyl-CoA hydratase; 98.7 2.5E-07 5.3E-12 84.2 13.9 138 114-270 27-188 (260)
63 PRK08150 enoyl-CoA hydratase; 98.7 4.7E-07 1E-11 82.4 15.6 137 114-271 26-181 (255)
64 TIGR01929 menB naphthoate synt 98.7 2.5E-07 5.5E-12 84.2 13.9 137 114-270 27-185 (259)
65 PRK09245 enoyl-CoA hydratase; 98.7 2.5E-07 5.3E-12 84.4 13.8 138 114-270 27-191 (266)
66 PRK07327 enoyl-CoA hydratase; 98.7 3.8E-07 8.2E-12 83.5 14.7 138 114-270 36-194 (268)
67 PRK07396 dihydroxynaphthoic ac 98.7 3.6E-07 7.7E-12 83.9 14.6 138 114-270 37-195 (273)
68 PRK07509 enoyl-CoA hydratase; 98.7 3.4E-07 7.4E-12 83.2 14.2 137 114-269 27-189 (262)
69 TIGR03189 dienoyl_CoA_hyt cycl 98.7 4.9E-07 1.1E-11 82.2 15.1 137 114-270 24-176 (251)
70 PRK07938 enoyl-CoA hydratase; 98.7 3E-07 6.6E-12 83.3 13.7 135 114-270 25-179 (249)
71 TIGR02280 PaaB1 phenylacetate 98.7 4.6E-07 1E-11 82.3 14.9 137 114-270 23-181 (256)
72 PRK05864 enoyl-CoA hydratase; 98.7 3.5E-07 7.7E-12 84.0 14.2 140 114-271 34-199 (276)
73 PRK06494 enoyl-CoA hydratase; 98.7 5.7E-07 1.2E-11 81.9 15.3 138 114-270 28-182 (259)
74 PRK08139 enoyl-CoA hydratase; 98.7 6.6E-07 1.4E-11 81.9 15.7 138 114-271 35-192 (266)
75 PRK07260 enoyl-CoA hydratase; 98.7 4.6E-07 1E-11 82.2 14.5 137 114-271 26-187 (255)
76 PRK07854 enoyl-CoA hydratase; 98.7 4.7E-07 1E-11 81.8 14.3 136 114-269 24-173 (243)
77 PRK06142 enoyl-CoA hydratase; 98.7 5.3E-07 1.2E-11 82.6 14.7 138 114-270 30-197 (272)
78 PRK06144 enoyl-CoA hydratase; 98.7 4.4E-07 9.6E-12 82.8 13.9 138 114-270 32-191 (262)
79 PRK07468 enoyl-CoA hydratase; 98.7 4.3E-07 9.3E-12 82.8 13.8 137 114-270 29-187 (262)
80 PRK06127 enoyl-CoA hydratase; 98.7 8.2E-07 1.8E-11 81.3 15.4 138 114-270 35-194 (269)
81 PLN03214 probable enoyl-CoA hy 98.7 3.6E-07 7.9E-12 84.3 13.0 140 113-270 34-196 (278)
82 PRK08290 enoyl-CoA hydratase; 98.7 3.7E-07 8.1E-12 84.6 13.1 136 114-270 28-204 (288)
83 PRK05862 enoyl-CoA hydratase; 98.7 6.1E-07 1.3E-11 81.5 14.1 138 114-270 28-182 (257)
84 PRK05995 enoyl-CoA hydratase; 98.7 7.2E-07 1.6E-11 81.2 14.6 137 114-270 28-186 (262)
85 PRK07657 enoyl-CoA hydratase; 98.6 9.2E-07 2E-11 80.5 14.9 137 114-271 28-186 (260)
86 PRK06563 enoyl-CoA hydratase; 98.6 8.6E-07 1.9E-11 80.5 14.6 139 114-271 23-181 (255)
87 PRK08140 enoyl-CoA hydratase; 98.6 8.2E-07 1.8E-11 80.8 14.3 137 114-270 28-187 (262)
88 PRK09120 p-hydroxycinnamoyl Co 98.6 1E-06 2.2E-11 81.1 15.0 139 114-271 32-193 (275)
89 PRK08788 enoyl-CoA hydratase; 98.6 7.2E-07 1.6E-11 82.9 14.1 139 113-270 39-209 (287)
90 PRK08321 naphthoate synthase; 98.6 1.4E-06 3.1E-11 81.2 15.7 138 114-270 49-224 (302)
91 PRK06213 enoyl-CoA hydratase; 98.6 1.4E-06 3.1E-11 77.8 15.1 134 114-270 26-180 (229)
92 PRK08252 enoyl-CoA hydratase; 98.6 1.5E-06 3.3E-11 78.8 15.3 139 114-271 27-180 (254)
93 PRK07799 enoyl-CoA hydratase; 98.6 1.6E-06 3.5E-11 79.0 15.2 139 114-271 29-189 (263)
94 PRK06072 enoyl-CoA hydratase; 98.6 2E-06 4.4E-11 77.9 15.1 134 114-267 24-173 (248)
95 PRK05674 gamma-carboxygeranoyl 98.6 1.4E-06 3.1E-11 79.7 14.2 137 114-270 30-188 (265)
96 PRK08259 enoyl-CoA hydratase; 98.6 1.5E-06 3.3E-11 79.0 14.1 139 114-271 27-182 (254)
97 TIGR03200 dearomat_oah 6-oxocy 98.5 2.3E-06 5E-11 81.8 15.0 138 114-270 52-212 (360)
98 PRK12478 enoyl-CoA hydratase; 98.5 1E-06 2.2E-11 82.1 12.3 134 114-270 29-197 (298)
99 PRK05870 enoyl-CoA hydratase; 98.5 8.1E-07 1.8E-11 80.4 11.4 133 114-268 27-181 (249)
100 PRK08272 enoyl-CoA hydratase; 98.5 2.5E-06 5.4E-11 79.5 14.7 135 114-270 34-212 (302)
101 PLN02267 enoyl-CoA hydratase/i 98.5 4.7E-06 1E-10 75.2 16.0 138 114-270 23-184 (239)
102 PRK07112 polyketide biosynthes 98.5 2.7E-06 5.8E-11 77.4 14.3 135 114-270 28-183 (255)
103 PRK07659 enoyl-CoA hydratase; 98.5 2.1E-06 4.5E-11 78.3 13.3 132 114-268 30-184 (260)
104 KOG1680 Enoyl-CoA hydratase [L 98.4 1.9E-06 4.2E-11 79.2 11.2 136 114-271 61-216 (290)
105 COG1024 CaiD Enoyl-CoA hydrata 98.4 5.4E-06 1.2E-10 75.3 13.3 138 113-270 28-186 (257)
106 PRK05724 acetyl-CoA carboxylas 98.4 6.7E-06 1.4E-10 77.5 14.1 137 103-270 121-267 (319)
107 PRK07827 enoyl-CoA hydratase; 98.4 6.9E-06 1.5E-10 74.7 13.7 134 114-269 30-187 (260)
108 CHL00198 accA acetyl-CoA carbo 98.4 7E-06 1.5E-10 77.4 13.7 134 105-269 126-269 (322)
109 TIGR02440 FadJ fatty oxidation 98.4 6.2E-06 1.3E-10 85.2 14.4 139 114-271 26-187 (699)
110 PRK08184 benzoyl-CoA-dihydrodi 98.4 4.8E-06 1E-10 83.8 13.0 141 114-271 49-217 (550)
111 PRK12319 acetyl-CoA carboxylas 98.4 1.3E-05 2.7E-10 73.6 14.4 136 104-270 69-214 (256)
112 PRK11730 fadB multifunctional 98.3 7E-06 1.5E-10 85.0 14.1 138 114-270 31-190 (715)
113 PLN02851 3-hydroxyisobutyryl-C 98.3 1.4E-05 2.9E-10 77.9 15.1 146 106-271 53-226 (407)
114 TIGR00513 accA acetyl-CoA carb 98.3 1E-05 2.2E-10 76.2 13.7 135 104-269 122-266 (316)
115 PLN02157 3-hydroxyisobutyryl-C 98.3 1.6E-05 3.4E-10 77.4 15.3 138 114-271 61-221 (401)
116 TIGR02437 FadB fatty oxidation 98.3 1.3E-05 2.9E-10 83.0 15.4 138 114-270 31-190 (714)
117 PLN02988 3-hydroxyisobutyryl-C 98.3 1.9E-05 4.1E-10 76.3 15.1 143 108-270 22-192 (381)
118 PLN03230 acetyl-coenzyme A car 98.3 1E-05 2.2E-10 78.5 13.1 128 112-270 200-337 (431)
119 PRK05617 3-hydroxyisobutyryl-C 98.3 7.9E-06 1.7E-10 77.7 12.3 134 114-270 27-187 (342)
120 PLN02874 3-hydroxyisobutyryl-C 98.3 1.6E-05 3.5E-10 76.6 14.5 143 108-270 24-192 (379)
121 PRK11154 fadJ multifunctional 98.3 1.9E-05 4.2E-10 81.7 15.4 138 114-270 31-191 (708)
122 TIGR03222 benzo_boxC benzoyl-C 98.3 1.3E-05 2.7E-10 80.8 13.0 140 114-270 45-212 (546)
123 TIGR02441 fa_ox_alpha_mit fatt 98.2 2.9E-05 6.4E-10 80.7 14.6 137 114-270 38-198 (737)
124 PLN03229 acetyl-coenzyme A car 98.1 3.1E-05 6.8E-10 79.4 13.3 128 111-269 220-357 (762)
125 TIGR03134 malonate_gamma malon 98.1 0.00011 2.3E-09 66.9 14.5 129 114-270 45-189 (238)
126 TIGR03222 benzo_boxC benzoyl-C 98.0 0.00011 2.4E-09 74.0 13.7 140 114-270 295-465 (546)
127 TIGR01117 mmdA methylmalonyl-C 97.9 9.5E-05 2.1E-09 74.0 10.7 140 111-270 328-481 (512)
128 PRK08184 benzoyl-CoA-dihydrodi 97.8 0.00021 4.6E-09 72.1 12.3 141 114-271 299-470 (550)
129 PF01039 Carboxyl_trans: Carbo 97.3 0.00052 1.1E-08 68.4 7.5 146 112-271 308-465 (493)
130 PLN02820 3-methylcrotonyl-CoA 97.3 0.002 4.3E-08 65.4 11.4 93 111-205 379-483 (569)
131 PRK05654 acetyl-CoA carboxylas 97.3 0.0039 8.4E-08 58.4 12.0 91 109-203 132-233 (292)
132 COG0825 AccA Acetyl-CoA carbox 97.2 0.0015 3.3E-08 60.7 8.7 107 135-270 150-266 (317)
133 TIGR00515 accD acetyl-CoA carb 97.2 0.0042 9E-08 58.0 11.4 125 109-271 131-266 (285)
134 KOG1681 Enoyl-CoA isomerase [L 97.1 0.00072 1.6E-08 61.2 5.4 102 151-270 114-215 (292)
135 TIGR03133 malonate_beta malona 96.8 0.011 2.3E-07 55.0 10.0 94 109-204 70-177 (274)
136 PRK07189 malonate decarboxylas 96.6 0.012 2.5E-07 55.4 9.2 94 109-204 79-186 (301)
137 COG0447 MenB Dihydroxynaphthoi 96.4 0.0068 1.5E-07 54.7 6.0 136 114-270 43-204 (282)
138 KOG1679 Enoyl-CoA hydratase [L 96.4 0.011 2.4E-07 53.2 7.1 131 117-270 58-212 (291)
139 PF06833 MdcE: Malonate decarb 95.8 0.16 3.4E-06 46.2 11.5 86 111-198 40-139 (234)
140 KOG1682 Enoyl-CoA isomerase [L 95.3 0.085 1.8E-06 47.4 7.8 97 153-270 115-212 (287)
141 COG4799 Acetyl-CoA carboxylase 94.8 0.12 2.5E-06 52.1 8.2 93 110-204 336-440 (526)
142 PLN02820 3-methylcrotonyl-CoA 94.5 0.25 5.4E-06 50.4 10.0 90 110-203 141-244 (569)
143 CHL00174 accD acetyl-CoA carbo 93.3 0.52 1.1E-05 44.3 8.9 92 109-204 144-247 (296)
144 TIGR01117 mmdA methylmalonyl-C 92.5 0.62 1.3E-05 46.9 8.7 93 108-204 92-194 (512)
145 KOG0016 Enoyl-CoA hydratase/is 92.4 1.2 2.7E-05 41.1 9.8 97 155-270 99-195 (266)
146 PF01039 Carboxyl_trans: Carbo 91.3 0.46 1E-05 47.5 6.3 91 110-204 69-171 (493)
147 cd07560 Peptidase_S41_CPP C-te 89.0 2.9 6.3E-05 37.0 8.9 89 97-187 41-155 (211)
148 TIGR00225 prc C-terminal pepti 88.4 2.7 5.9E-05 39.6 8.8 81 106-187 152-258 (334)
149 cd06567 Peptidase_S41 C-termin 88.3 3.4 7.3E-05 36.2 8.7 70 116-187 72-168 (224)
150 PLN00049 carboxyl-terminal pro 86.9 3.9 8.3E-05 39.6 8.9 81 105-186 194-302 (389)
151 PRK11186 carboxy-terminal prot 86.4 3.5 7.6E-05 43.0 8.8 81 105-186 353-460 (667)
152 KOG1684 Enoyl-CoA hydratase [L 84.8 3.4 7.4E-05 40.0 7.2 97 105-203 48-180 (401)
153 COG0793 Prc Periplasmic protea 84.7 4.5 9.7E-05 39.6 8.3 79 107-186 205-310 (406)
154 PF08496 Peptidase_S49_N: Pept 83.4 2.2 4.7E-05 36.5 4.8 39 110-150 105-146 (155)
155 cd07561 Peptidase_S41_CPP_like 81.8 6.8 0.00015 35.8 7.8 82 105-187 64-184 (256)
156 PF03572 Peptidase_S41: Peptid 80.3 6.8 0.00015 32.2 6.7 70 117-187 15-114 (169)
157 smart00245 TSPc tail specific 79.0 13 0.00028 32.2 8.2 82 105-187 28-136 (192)
158 cd07562 Peptidase_S41_TRI Tric 76.0 17 0.00036 33.1 8.5 81 102-187 84-187 (266)
159 COG4799 Acetyl-CoA carboxylase 69.1 12 0.00025 38.1 6.1 90 110-203 103-202 (526)
160 PLN00125 Succinyl-CoA ligase [ 69.0 17 0.00036 34.3 6.9 64 107-175 180-245 (300)
161 cd07563 Peptidase_S41_IRBP Int 68.6 22 0.00047 31.9 7.4 66 119-187 82-181 (250)
162 COG0074 SucD Succinyl-CoA synt 62.7 20 0.00044 33.7 6.0 77 108-198 176-253 (293)
163 PTZ00187 succinyl-CoA syntheta 59.8 28 0.00061 33.1 6.6 65 107-175 199-264 (317)
164 COG0777 AccD Acetyl-CoA carbox 59.6 65 0.0014 30.3 8.7 89 109-205 133-236 (294)
165 PF13607 Succ_CoA_lig: Succiny 53.9 44 0.00095 27.8 6.1 59 107-173 31-91 (138)
166 TIGR00377 ant_ant_sig anti-ant 49.7 1.1E+02 0.0024 23.0 7.5 34 107-140 15-48 (108)
167 KOG0540 3-Methylcrotonyl-CoA c 48.2 63 0.0014 32.5 6.9 86 112-201 363-461 (536)
168 TIGR02886 spore_II_AA anti-sig 45.8 40 0.00087 25.6 4.4 34 107-140 11-44 (106)
169 COG0757 AroQ 3-dehydroquinate 43.5 70 0.0015 27.1 5.6 44 121-169 55-98 (146)
170 cd06844 STAS Sulphate Transpor 42.3 1.4E+02 0.003 22.5 6.9 35 107-141 11-45 (100)
171 PF00549 Ligase_CoA: CoA-ligas 40.0 70 0.0015 27.2 5.3 57 120-176 59-121 (153)
172 TIGR02763 chlamy_scaf chlamydi 38.2 1.4E+02 0.003 24.1 6.3 54 212-267 31-87 (114)
173 PRK06091 membrane protein FdrA 36.8 85 0.0018 32.3 6.1 53 121-175 239-291 (555)
174 PHA00099 minor capsid protein 36.6 1.5E+02 0.0032 24.9 6.4 51 212-264 61-114 (147)
175 PLN02522 ATP citrate (pro-S)-l 35.5 1E+02 0.0022 32.1 6.5 64 107-175 197-262 (608)
176 PF00681 Plectin: Plectin repe 33.8 28 0.00061 23.1 1.6 18 249-266 18-35 (45)
177 cd07043 STAS_anti-anti-sigma_f 32.5 1.9E+02 0.0042 20.9 7.1 78 107-185 11-90 (99)
178 cd07041 STAS_RsbR_RsbS_like Su 32.3 2.2E+02 0.0048 21.5 8.2 79 107-185 13-93 (109)
179 PF09675 Chlamy_scaf: Chlamydi 29.9 2.8E+02 0.0062 22.5 6.9 58 207-266 23-86 (114)
180 TIGR02364 dha_pts dihydroxyace 28.4 2.8E+02 0.006 22.6 6.9 55 105-162 28-85 (125)
181 KOG3093 5-formyltetrahydrofola 28.2 84 0.0018 27.9 3.9 46 117-162 29-74 (200)
182 TIGR01019 sucCoAalpha succinyl 28.1 1.7E+02 0.0037 27.3 6.3 62 107-175 173-237 (286)
183 PF06972 DUF1296: Protein of u 27.1 1.1E+02 0.0024 22.1 3.7 31 229-260 9-40 (60)
184 COG1366 SpoIIAA Anti-anti-sigm 26.9 1.3E+02 0.0027 23.6 4.5 38 107-146 16-53 (117)
185 PF01740 STAS: STAS domain; I 26.2 3E+02 0.0064 21.0 8.6 77 106-182 11-97 (117)
186 PF02310 B12-binding: B12 bind 26.2 3E+02 0.0065 21.0 7.6 67 106-181 30-97 (121)
187 smart00250 PLEC Plectin repeat 25.8 43 0.00092 21.3 1.3 18 250-267 19-36 (38)
188 PF14566 PTPlike_phytase: Inos 25.6 2.6E+02 0.0056 23.2 6.4 52 104-160 90-149 (149)
189 COG1512 Beta-propeller domains 25.2 1.7E+02 0.0037 27.2 5.7 56 103-158 32-89 (271)
190 PRK05678 succinyl-CoA syntheta 24.8 2.3E+02 0.0051 26.5 6.5 64 107-175 175-239 (291)
191 TIGR00282 metallophosphoestera 24.8 1.4E+02 0.0031 27.6 5.1 65 106-170 2-66 (266)
192 PF09862 DUF2089: Protein of u 24.3 1.7E+02 0.0037 23.8 4.8 53 208-261 49-111 (113)
193 PF03808 Glyco_tran_WecB: Glyc 23.6 4.5E+02 0.0097 22.1 7.8 62 105-173 49-111 (172)
194 PRK13015 3-dehydroquinate dehy 23.2 1.4E+02 0.0031 25.3 4.3 44 121-169 56-99 (146)
195 TIGR01579 MiaB-like-C MiaB-lik 21.9 3.5E+02 0.0077 26.0 7.4 70 108-177 2-77 (414)
196 TIGR02717 AcCoA-syn-alpha acet 21.5 1.6E+02 0.0036 28.9 5.1 62 107-176 180-243 (447)
197 TIGR02675 tape_meas_nterm tape 21.0 1.9E+02 0.004 21.4 4.1 29 228-257 46-74 (75)
198 PRK00286 xseA exodeoxyribonucl 20.5 7.9E+02 0.017 23.9 9.7 85 106-197 164-254 (438)
199 cd02067 B12-binding B12 bindin 20.3 4.1E+02 0.0089 20.5 8.0 73 106-187 29-105 (119)
200 cd00466 DHQase_II Dehydroquina 20.2 1.9E+02 0.0041 24.4 4.4 44 121-169 54-97 (140)
201 PRK13170 hisH imidazole glycer 20.0 86 0.0019 27.2 2.5 28 145-172 45-79 (196)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-55 Score=392.04 Aligned_cols=179 Identities=47% Similarity=0.834 Sum_probs=175.7
Q ss_pred CCCCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEcc
Q 024122 93 GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 93 ~g~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G 172 (272)
++++||+++||++|||||+++||+++++.+++||++|+.+|+.|+|+||||||||+++++++|||+|++++.||.|+|.|
T Consensus 80 ~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~G 159 (275)
T KOG0840|consen 80 ERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVG 159 (275)
T ss_pred CCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeehh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
+|||+|++|+++|.||+|+++||+++|||||.+++.|++.|+.++++|+.++++.+.++|+++||++.|+|.+.++||+|
T Consensus 160 ~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~f 239 (275)
T KOG0840|consen 160 LAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRF 239 (275)
T ss_pred hHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHcCCceeeccCC
Q 024122 253 LSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~~ 271 (272)
|+|+||+||||||+|++..
T Consensus 240 msa~EA~eyGliD~v~~~p 258 (275)
T KOG0840|consen 240 MSAEEAKEYGLIDKVIDHP 258 (275)
T ss_pred CCHHHHHHhcchhhhhcCC
Confidence 9999999999999999853
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.8e-54 Score=376.33 Aligned_cols=187 Identities=43% Similarity=0.790 Sum_probs=179.7
Q ss_pred cccEEecCC----CCCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHH
Q 024122 85 LMPAVMTPG----GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160 (272)
Q Consensus 85 ~~~~v~~~~----g~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~ 160 (272)
+.|.++++. ...|+|++|+++|+|||.|+|++.+++.++.||+.|+.+++.++|.||||||||+|++|++|||+|+
T Consensus 3 ~~~~~~e~~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~ 82 (200)
T COG0740 3 LVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQ 82 (200)
T ss_pred CCccccCcccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHH
Confidence 456666552 2689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 024122 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPI 240 (272)
Q Consensus 161 ~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~ 240 (272)
.+++||+|+|.|.|||||++|++||++|+|+++|||++|||||++|.+|+++|++++++|+.++++.+.++|+++||+++
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~ 162 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTL 162 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceecHHHHHHcCCceeeccCC
Q 024122 241 EKVQQYTERDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 241 e~I~~~~~~d~~lsa~EAle~GLID~I~~~~ 271 (272)
++++++++||+||||+||++|||||+|++.+
T Consensus 163 e~i~~d~drd~~msa~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 163 EKIEKDTDRDTWMSAEEAKEYGLIDKVIESR 193 (200)
T ss_pred HHHHHhhcccccCCHHHHHHcCCcceecccc
Confidence 9999999999999999999999999999864
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=9.3e-52 Score=363.80 Aligned_cols=177 Identities=41% Similarity=0.749 Sum_probs=173.5
Q ss_pred CCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEcccc
Q 024122 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 95 ~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++|++++|+++|||||+++|++++++.++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|+|
T Consensus 17 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~A 96 (201)
T PRK14513 17 MYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIA 96 (201)
T ss_pred ccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEeee
Confidence 78999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
||||++|++||++|+|++.|||++|||||+++..|++.|++.++++++++++.+.++|+++||++.++|.+++++|+|||
T Consensus 97 aS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~ms 176 (201)
T PRK14513 97 MSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMS 176 (201)
T ss_pred hhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccCC
Q 024122 255 AAEAMEFGLIDGILETE 271 (272)
Q Consensus 255 a~EAle~GLID~I~~~~ 271 (272)
|+||+||||||+|+++.
T Consensus 177 a~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 177 PEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHHHcCCCcEEeccC
Confidence 99999999999999763
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.8e-51 Score=366.33 Aligned_cols=177 Identities=38% Similarity=0.692 Sum_probs=173.7
Q ss_pred CCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEcccc
Q 024122 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 95 ~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++|+|++|+++|||||+|+||+.+++.++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|+|
T Consensus 44 ~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G~A 123 (221)
T PRK14514 44 QMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGMA 123 (221)
T ss_pred ccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 79999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
||||++|+++|++|+|++.||+++|+|||+++..|++.|++.+++++.++++.+.++|+++||++.++|++++++|+|||
T Consensus 124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmt 203 (221)
T PRK14514 124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMT 203 (221)
T ss_pred hhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccCC
Q 024122 255 AAEAMEFGLIDGILETE 271 (272)
Q Consensus 255 a~EAle~GLID~I~~~~ 271 (272)
|+||++|||||+|++++
T Consensus 204 A~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 204 AQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHcCCccEEeecC
Confidence 99999999999999864
No 5
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.4e-50 Score=353.89 Aligned_cols=177 Identities=42% Similarity=0.773 Sum_probs=173.2
Q ss_pred CCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEcccc
Q 024122 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 95 ~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++|++++|+++|||||+++||+.+++.++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|+|
T Consensus 15 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~A 94 (196)
T PRK12551 15 AFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLA 94 (196)
T ss_pred ccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 68999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
||+|++|+++|++|+|++.|||++|||||+++..|++.|++.++++++++++.+.++|+++||++.++|.+++++|+|||
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ms 174 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMS 174 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccCC
Q 024122 255 AAEAMEFGLIDGILETE 271 (272)
Q Consensus 255 a~EAle~GLID~I~~~~ 271 (272)
|+||++|||||+|++++
T Consensus 175 a~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 175 PSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHHcCCCcEEeccC
Confidence 99999999999999864
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2.9e-50 Score=354.43 Aligned_cols=177 Identities=40% Similarity=0.698 Sum_probs=173.4
Q ss_pred CCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEcccc
Q 024122 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 95 ~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
|+|++++|+++|||||+++||+++++.++++|++|+.+++.++|.||||||||+|++|++|||+|+.++.||+|+|.|+|
T Consensus 20 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G~A 99 (200)
T CHL00028 20 WVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLGLA 99 (200)
T ss_pred cccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEeh
Confidence 78999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCC-CCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG-SGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g-~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
||+|++|+++|++|+|++.|||++|+|||+++ ..|++.|++.++++++++++.+.++|+++||++.+++++++++|+||
T Consensus 100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~l 179 (200)
T CHL00028 100 ASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFM 179 (200)
T ss_pred HHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccC
Confidence 99999999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCceeeccCC
Q 024122 254 SAAEAMEFGLIDGILETE 271 (272)
Q Consensus 254 sa~EAle~GLID~I~~~~ 271 (272)
||+||++|||||+|++++
T Consensus 180 ta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 180 SATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CHHHHHHcCCCcEEeecC
Confidence 999999999999999864
No 7
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=1.6e-50 Score=360.02 Aligned_cols=177 Identities=39% Similarity=0.657 Sum_probs=172.1
Q ss_pred CCCcchhhccCcEEEEcceeChh----------HHHHHHHHHHHHhccCCCCCEEEEEeCCCCc---------HHHHHHH
Q 024122 95 PLDLSSVLFRNRIIFIGQPINSM----------VAQRAISQLVTLATIDEDADILMYLNCPGGS---------IYSVLAI 155 (272)
Q Consensus 95 ~~di~s~l~~~rII~l~G~Id~~----------~a~~ii~~L~~l~~~d~~~~I~L~INSPGGs---------V~a~~~I 155 (272)
+.|++++|+++|||||+++|+++ +++.++++|++|+.+++.++|.||||||||+ ++++++|
T Consensus 20 ~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaI 99 (222)
T PRK12552 20 PPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAI 99 (222)
T ss_pred CcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHH
Confidence 57999999999999999999999 9999999999999999899999999999988 7788999
Q ss_pred HHHHHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHH
Q 024122 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAF 235 (272)
Q Consensus 156 ~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~ 235 (272)
||+|+.++.||+|+|.|+|||+|++|+++|++|+|++.|||++|||||+++..|++.|++.++++++++++.+.++|+++
T Consensus 100 yD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~ 179 (222)
T PRK12552 100 CDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRN 179 (222)
T ss_pred HHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhhCCceecHHHHHHcCCceeeccCC
Q 024122 236 TGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 236 tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~~ 271 (272)
||++.++|.++++||+||||+||+||||||+|++++
T Consensus 180 TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 180 TGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 999999999999999999999999999999999763
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=7.5e-47 Score=330.55 Aligned_cols=176 Identities=44% Similarity=0.760 Sum_probs=171.6
Q ss_pred CCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEcccc
Q 024122 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 95 ~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++|++++|+++|+|||+|+|++.+++.++.+|++++.+++.++|+|+||||||+++++++|||.|+.++.||+|+|.|.|
T Consensus 16 ~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~A 95 (191)
T TIGR00493 16 SFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGQA 95 (191)
T ss_pred cccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEEee
Confidence 78999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
||+|++|+++|++++|++.|||++|+|||+++..|++.|++.++++++++++.+.++|+++||++.+++++++++|+|||
T Consensus 96 aSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lt 175 (191)
T TIGR00493 96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMS 175 (191)
T ss_pred ccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCc
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccC
Q 024122 255 AAEAMEFGLIDGILET 270 (272)
Q Consensus 255 a~EAle~GLID~I~~~ 270 (272)
|+||++|||||+|++.
T Consensus 176 a~EA~~~GliD~ii~~ 191 (191)
T TIGR00493 176 AEEAKEYGLIDSVLTR 191 (191)
T ss_pred HHHHHHcCCccEEecC
Confidence 9999999999999863
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.8e-46 Score=326.97 Aligned_cols=178 Identities=31% Similarity=0.527 Sum_probs=171.9
Q ss_pred CCCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccc
Q 024122 94 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 94 g~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.|++++|+++|+|||.|+|++.++..|+++|++++..++.++|+|+||||||+|+++++|||+|+.++.||+|+|.|.
T Consensus 12 ~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~ 91 (197)
T PRK14512 12 GIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGL 91 (197)
T ss_pred CcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 36789999999999999999999999999999999998777899999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|||||++|+++|++|+|++.||+++|+|||+++..|++.|++.++++++++++.+.++|+++||++.+++++++++|+||
T Consensus 92 AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~l 171 (197)
T PRK14512 92 VASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWL 171 (197)
T ss_pred eHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCceeeccCC
Q 024122 254 SAAEAMEFGLIDGILETE 271 (272)
Q Consensus 254 sa~EAle~GLID~I~~~~ 271 (272)
||+||++|||||+|+++.
T Consensus 172 ta~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 172 DSSSAVKYGLVFEVVETR 189 (197)
T ss_pred CHHHHHHcCCccEeecCc
Confidence 999999999999999863
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.1e-45 Score=325.14 Aligned_cols=187 Identities=43% Similarity=0.768 Sum_probs=177.0
Q ss_pred cccEEecCC----CCCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHH
Q 024122 85 LMPAVMTPG----GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160 (272)
Q Consensus 85 ~~~~v~~~~----g~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~ 160 (272)
+.|..+.++ .++|+++.|+++|+|||+|+|++.+++.++++|++++.+++.++|+|+||||||+++++++|||.|+
T Consensus 7 ~~p~~~~~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~ 86 (200)
T PRK00277 7 LVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQ 86 (200)
T ss_pred CCceeeccCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHH
Confidence 356555322 2899999999999999999999999999999999999988889999999999999999999999999
Q ss_pred hhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 024122 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPI 240 (272)
Q Consensus 161 ~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~ 240 (272)
.++.||+|+|.|.|+|+|++|+++|++++|++.|++++|+|+|+++..|++.|++.++++++++++.+.++|+++||++.
T Consensus 87 ~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~ 166 (200)
T PRK00277 87 FIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPL 166 (200)
T ss_pred hcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceecHHHHHHcCCceeeccCC
Q 024122 241 EKVQQYTERDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 241 e~I~~~~~~d~~lsa~EAle~GLID~I~~~~ 271 (272)
+++++++++|+||||+||+++||||+|+++.
T Consensus 167 ~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 167 EKIEKDTDRDNFMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred HHHHHHhhCCccccHHHHHHcCCccEEeecC
Confidence 9999999999999999999999999999864
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=4.2e-45 Score=315.18 Aligned_cols=177 Identities=42% Similarity=0.700 Sum_probs=168.0
Q ss_pred CCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEcccc
Q 024122 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 95 ~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
|+|++++|+++|+|||.|+||+.+++.++++|.+|+.+++.++|+|+||||||+++++++|||.|+.++.||+|+|.|.|
T Consensus 6 ~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 6 WYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp EEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred EEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 78999999999999999999999999999999999888788999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
||+|++|+++|++++|++.|+|.||+|+|..+..|+..++..+.++++++++.+.+.|+++||++++++++++++++||+
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~ 165 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLS 165 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEE
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccCC
Q 024122 255 AAEAMEFGLIDGILETE 271 (272)
Q Consensus 255 a~EAle~GLID~I~~~~ 271 (272)
|+||+++||||+|++++
T Consensus 166 a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 166 AEEALEYGIIDEIIESR 182 (182)
T ss_dssp HHHHHHHTSSSEEESS-
T ss_pred HHHHHHcCCCCEeccCC
Confidence 99999999999999874
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=5e-44 Score=316.30 Aligned_cols=177 Identities=42% Similarity=0.756 Sum_probs=171.1
Q ss_pred CCCcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEcccc
Q 024122 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 95 ~~di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++|+++.++++|+|||+|+|++.+++.|+++|++++.+++.++|+|+||||||+++++++|||.|+.++.||+|+|.|.|
T Consensus 25 ~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 25 ESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred cccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 58999999999999999999999999999999999988878999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCC--CCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ--SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~--~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
||+|++|+++|++|+|++.|++++|+|||+ ++..|++.|++.+.++++++++.+.++|+++||++.+++++++++++|
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~ 184 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKW 184 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcc
Confidence 999999999999988999999999999998 567899999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHcCCceeeccCC
Q 024122 253 LSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~~ 271 (272)
|||+||+++||||+|+++.
T Consensus 185 lta~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 185 LTAEEAKDYGLVDQIITSY 203 (207)
T ss_pred ccHHHHHHcCCccEEcCch
Confidence 9999999999999999863
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=1.2e-43 Score=304.78 Aligned_cols=171 Identities=49% Similarity=0.857 Sum_probs=166.6
Q ss_pred CcchhhccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccch
Q 024122 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 97 di~s~l~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AAS 176 (272)
|++++|+++|+|+++|+|++.++++++++|++++.+++.++|+|+||||||+++++++|||.|+.++.||+|++.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 78999999999999999999999999999999998887799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 256 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~ 256 (272)
+|++|+++|++|+|++.|++++|+|+|+++..|+..|+..++++++++++.+.++|+++||++.+++.+++++++||||+
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceee
Q 024122 257 EAMEFGLIDGI 267 (272)
Q Consensus 257 EAle~GLID~I 267 (272)
||+++||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=5.5e-43 Score=298.55 Aligned_cols=162 Identities=35% Similarity=0.597 Sum_probs=158.4
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccchHHHHHHhcC
Q 024122 106 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGG 185 (272)
Q Consensus 106 rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag 185 (272)
|+|+|.|+|++.+++.|+++|++++.+++.++|+|+||||||+++++++|||+|+.++.||+|+|.|+|||+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 78999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCce
Q 024122 186 EKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLID 265 (272)
Q Consensus 186 ~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID 265 (272)
++|+|++.|++++|+|+|+++..|+..|++.+.++++++++.|.++|+++||++++++++++++++||||+||+++||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 024122 266 GI 267 (272)
Q Consensus 266 ~I 267 (272)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=2.4e-33 Score=237.30 Aligned_cols=156 Identities=31% Similarity=0.487 Sum_probs=148.9
Q ss_pred EEEEcceeCh---hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccchHHHHHHh
Q 024122 107 IIFIGQPINS---MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183 (272)
Q Consensus 107 II~l~G~Id~---~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ 183 (272)
.|+|.|+|+. .+++.+.+.|.+++.+ ++|+|+||||||++.++++|++.|+.+++||++++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 5789999999 7999999999987654 789999999999999999999999999999999999999999999999
Q ss_pred cCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCC
Q 024122 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 263 (272)
Q Consensus 184 ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GL 263 (272)
+||+ |++.|+++||+|+|..+..|+..+++...++++++++.+.+.|++++|++.+++++++.+++||+++||+++||
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 9998 99999999999999998889888999999999999999999999999999999999999999999999999999
Q ss_pred ceee
Q 024122 264 IDGI 267 (272)
Q Consensus 264 ID~I 267 (272)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.98 E-value=2.5e-31 Score=229.11 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=136.8
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEc---cccchHHHHHHh
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 183 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~---G~AASaa~lIa~ 183 (272)
+|-+.|.|++.+.+.+.+.|...+. ++.+.|+|+||||||+++++++||+.|+..+.||+++|. |.|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 4668999999999999999988765 468999999999999999999999999999999999999 999999999999
Q ss_pred cCccCcEEeccCcEEeeecCCCCCCcC-----chhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHH
Q 024122 184 GGEKGMRYAMPNARIMLNQPQSGSGGH-----VEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 258 (272)
Q Consensus 184 ag~~g~R~a~Pna~imiHqp~~g~~G~-----~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EA 258 (272)
+|++ |+|.|++++|.|+|..+ .|+ ..|.+.+..++.+++ .+++++|++.+.+++++++++|||++||
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r-----~~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIK-----SLAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHH-----HHHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 9999 99999999999999864 344 334444444444443 3999999999999999999999999999
Q ss_pred HHcCCceeeccC
Q 024122 259 MEFGLIDGILET 270 (272)
Q Consensus 259 le~GLID~I~~~ 270 (272)
+++|+||.|.++
T Consensus 154 ~~~G~iD~ia~~ 165 (172)
T cd07015 154 LKYGVIEVVARD 165 (172)
T ss_pred HHcCCceeeeCC
Confidence 999999999876
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=4.4e-31 Score=222.81 Aligned_cols=159 Identities=26% Similarity=0.344 Sum_probs=148.5
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccchHHHHHHhcCc
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~ 186 (272)
+|+|+|+|++.+.+.+++.|+.++.+++.+.|+|++|||||++.++.+|+++|+.+++||++++.|.|+|+|++|+++||
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58899999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEeccCcEEeeecCCCCCCcCc--hhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCc
Q 024122 187 KGMRYAMPNARIMLNQPQSGSGGHV--EDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLI 264 (272)
Q Consensus 187 ~g~R~a~Pna~imiHqp~~g~~G~~--~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLI 264 (272)
+ |++.|++.+++|+|..+..+.. .+.+...+.++.+.+.+.+.+++++|++.+++++.+.++.||+++||+++|||
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 8 9999999999999987665554 56666667788899999999999999999999999999999999999999999
Q ss_pred eee
Q 024122 265 DGI 267 (272)
Q Consensus 265 D~I 267 (272)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.96 E-value=6.4e-28 Score=209.81 Aligned_cols=160 Identities=21% Similarity=0.188 Sum_probs=138.8
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEc---cccchHHHHHHh
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 183 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~---G~AASaa~lIa~ 183 (272)
+|.|+|+|++...+.+.++|+.++.+ +.+.|+|+||||||+++++++|++.|+.+++||+++|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 56799999999999999999998865 47999999999999999999999999999999999998 999999999999
Q ss_pred cCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCC
Q 024122 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 263 (272)
Q Consensus 184 ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GL 263 (272)
+||+ |++.|+++|+.|.|..+..+...+...+.+.+..+.. +...|++++|++.+.+++++..++||+++||+++||
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Gl 158 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCC
Confidence 9999 9999999999999985433332333344444444443 567899999999999999988899999999999999
Q ss_pred ceeeccC
Q 024122 264 IDGILET 270 (272)
Q Consensus 264 ID~I~~~ 270 (272)
||+|++.
T Consensus 159 vd~v~~~ 165 (187)
T cd07020 159 IDLIAAD 165 (187)
T ss_pred cccccCC
Confidence 9999875
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.95 E-value=3.1e-26 Score=198.47 Aligned_cols=156 Identities=23% Similarity=0.268 Sum_probs=135.5
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccchHHHHHHhcCc
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~ 186 (272)
+|.+.|+|++...+.+.+.|..+++++ .+.|+|+||||||.++++..|++.|+.++.||++++.|.|+|+|++|+++||
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 567899999999999999999887764 7899999999999999999999999999999999999999999999999999
Q ss_pred cCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC-------------cee
Q 024122 187 KGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD-------------RFL 253 (272)
Q Consensus 187 ~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d-------------~~l 253 (272)
+ ++|.|++.++.|.|.....+...+ +.+.+....+.+.|++++|++.+.++++++++ .||
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 9 999999999999998654443222 12222233445679999999999999999988 599
Q ss_pred cHHHHHHcCCceeeccC
Q 024122 254 SAAEAMEFGLIDGILET 270 (272)
Q Consensus 254 sa~EAle~GLID~I~~~ 270 (272)
|++||+++|++|.|.++
T Consensus 155 ta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 155 TADEALKVGYAEGIAGS 171 (178)
T ss_pred CHHHHHHhCCeEEEECC
Confidence 99999999999999875
No 20
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.88 E-value=2e-21 Score=171.50 Aligned_cols=160 Identities=19% Similarity=0.241 Sum_probs=130.7
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhC--CCeEEEEccccchHHHHHHhc
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGVAASQAAIILAG 184 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~--~pV~tvv~G~AASaa~lIa~a 184 (272)
+|.+.|+|+ .+.+.+.+.|..++.++..+.|+|++|||||++..+..|++.|+.++ +||++++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 577899998 55788999999998888889999999999999999999999999998 899999999999999999999
Q ss_pred CccCcEEeccCcEEeeecCCC------------C------CCcCch------------hhHHHHHHHHHHHHHHHHHHHH
Q 024122 185 GEKGMRYAMPNARIMLNQPQS------------G------SGGHVE------------DVKRQVNEAVISRHKIDRMYAA 234 (272)
Q Consensus 185 g~~g~R~a~Pna~imiHqp~~------------g------~~G~~~------------di~~~~~el~~~~~~i~~~ya~ 234 (272)
||+ |++.|++.++...+.. | ..|+.+ +.+...+.++.+.+.|.+.+++
T Consensus 83 aD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~ 160 (207)
T TIGR00706 83 ADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK 160 (207)
T ss_pred CCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 9999999764322210 1 112211 1222234456677788888999
Q ss_pred HhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 235 FTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 235 ~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
.+|++.++++++++. ..|+++||+++||||+|...
T Consensus 161 ~R~~~~~~~~~~~~~-~~~~~~~A~~~gLvD~i~~~ 195 (207)
T TIGR00706 161 GRNLPVEDVKKFADG-RVFTGRQALKLRLVDKLGTE 195 (207)
T ss_pred cCCCCHHHHHHHhcC-CcccHHHHHHcCCCcccCCH
Confidence 999999999998875 56799999999999999764
No 21
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.88 E-value=1e-21 Score=184.03 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=127.9
Q ss_pred EEEEcceeChhH-------HHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCC--CeEEEEccccchH
Q 024122 107 IIFIGQPINSMV-------AQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKP--KVGTVCFGVAASQ 177 (272)
Q Consensus 107 II~l~G~Id~~~-------a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~--pV~tvv~G~AASa 177 (272)
+|.+.|.|.... .+.+.+.|+.+..+++.++|+|+||||||++.++..|++.|+.++. ||++++.++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 355777776443 6677788888888888999999999999999999999999999976 6999999999999
Q ss_pred HHHHHhcCccCcEEeccCcEEe------eecCCC------C------CCcCch------------hhHHHHHHHHHHHHH
Q 024122 178 AAIILAGGEKGMRYAMPNARIM------LNQPQS------G------SGGHVE------------DVKRQVNEAVISRHK 227 (272)
Q Consensus 178 a~lIa~ag~~g~R~a~Pna~im------iHqp~~------g------~~G~~~------------di~~~~~el~~~~~~ 227 (272)
||||+++||+ ++|.|+|.++ .|.... | ..|..+ +.....+++++..+.
T Consensus 143 GY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 143 GYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred hhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999753 221110 0 122222 222333566677888
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 228 IDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 228 i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
|.+.+++.++++.+++.+..+ ++.|++++|++.||||++++.
T Consensus 221 F~~~V~~~R~~~~~~~~~~a~-g~v~~g~~A~~~gLVDelg~~ 262 (317)
T COG0616 221 FVDKVAEGRGLSDEAVDKLAT-GRVWTGQQALELGLVDELGGL 262 (317)
T ss_pred HHHHHHhcCCCChhHHHHHhc-cceecHHHhhhcCCchhcCCH
Confidence 899999999999988776655 789999999999999999874
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.87 E-value=6.4e-21 Score=164.02 Aligned_cols=144 Identities=15% Similarity=0.034 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCCeEEEEccccchHHHHHHhcCccCcEEecc
Q 024122 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194 (272)
Q Consensus 118 ~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~---~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~P 194 (272)
+.+.+.+.|..++.++..+.|+|.+|||||++.....+++.++.+ ++||++++.|.|+|+|++|+++||. +++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 457889999999888888999999999999999888887766554 6899999999999999999999999 99999
Q ss_pred CcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 195 na~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
++.|++|.+..+ .......+..+.+.|.+.+++.+|++.+++.+++..+.+|+|+||+++||||+|...
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~ 169 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence 999999977653 111223566778888999999999999999999988899999999999999999864
No 23
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.86 E-value=8.2e-21 Score=167.26 Aligned_cols=160 Identities=24% Similarity=0.223 Sum_probs=130.9
Q ss_pred EEEEcceeC---hhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCCeEEEEccccchHHHH
Q 024122 107 IIFIGQPIN---SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAASQAAI 180 (272)
Q Consensus 107 II~l~G~Id---~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~---~~pV~tvv~G~AASaa~l 180 (272)
+|.+.|+|+ +.+...+.++|..++.+++.+.|+|.+|||||++..+..+++.|+.+ ++||++++.|.|+|+|++
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 578999999 78999999999999988889999999999999999999999988766 469999999999999999
Q ss_pred HHhcCccCcEEeccCcEEeeecCCC------------C------CCcCc------------hhhHHHHHHHHHHHHHHHH
Q 024122 181 ILAGGEKGMRYAMPNARIMLNQPQS------------G------SGGHV------------EDVKRQVNEAVISRHKIDR 230 (272)
Q Consensus 181 Ia~ag~~g~R~a~Pna~imiHqp~~------------g------~~G~~------------~di~~~~~el~~~~~~i~~ 230 (272)
|+++||+ |++.|++.+....... | ..|.. ++.+...+.++.+.+.|.+
T Consensus 84 lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~ 161 (208)
T cd07023 84 IAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999874221110 0 11211 1223334456667788889
Q ss_pred HHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeecc
Q 024122 231 MYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 269 (272)
Q Consensus 231 ~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~ 269 (272)
.+++.+|++.+++.++.+. ..|+++||+++||||+|..
T Consensus 162 ~Va~~R~~~~~~~~~~~~~-~~~~a~~A~~~gLiD~i~~ 199 (208)
T cd07023 162 VVAEGRGMSGERLDKLADG-RVWTGRQALELGLVDELGG 199 (208)
T ss_pred HHHhcCCCCHHHHHHhcCC-cEEEHHHHHHcCCCcccCC
Confidence 9999999999999988874 5578999999999999985
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.85 E-value=2.4e-20 Score=187.38 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=129.5
Q ss_pred EEEEcceeChh-------HHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCCeEEEEccccch
Q 024122 107 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS 176 (272)
Q Consensus 107 II~l~G~Id~~-------~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~---~~pV~tvv~G~AAS 176 (272)
+|+++|+|.+. ..+.+.+.|..+..++..++|+|+||||||++.++..|+++|+.+ ++||++++.|+|||
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 67889998752 256788889988888888999999999999999999999999865 37999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEE------eeecCC------CC------CCc-----------CchhhHHHHHHHHHHHHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARI------MLNQPQ------SG------SGG-----------HVEDVKRQVNEAVISRHK 227 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~i------miHqp~------~g------~~G-----------~~~di~~~~~el~~~~~~ 227 (272)
+||+|+++||+ +++.|++.+ +.+... .| ..| +.++.+.....++...+.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999976 333210 01 111 122334445566777888
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeecc
Q 024122 228 IDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 269 (272)
Q Consensus 228 i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~ 269 (272)
|.+.+++.+|++.++++++++ ++.|+++||+++||||+|+.
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~-Grv~tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQ-GRVWTGEDAVSNGLVDALGG 510 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHh-CCCcCHHHHHHcCCcccCCC
Confidence 888999999999999998887 56779999999999999975
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.85 E-value=4e-20 Score=163.93 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhC--CCeEEEEccccchHHHHHHhcCccCcEEecc
Q 024122 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194 (272)
Q Consensus 117 ~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~--~pV~tvv~G~AASaa~lIa~ag~~g~R~a~P 194 (272)
.+...+.+.|..++.++..+.|+|.+|||||++.....|++.|+.++ +||++++.|.|+|+|++++++||+ +++.|
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~ 102 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAADR--IVVTP 102 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCE--EEEcC
Confidence 45689999999999888899999999999999999999999999998 999999999999999999999999 99999
Q ss_pred CcEEeee------cCCC------C------CCcCch------------hhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 024122 195 NARIMLN------QPQS------G------SGGHVE------------DVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 244 (272)
Q Consensus 195 na~imiH------qp~~------g------~~G~~~------------di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~ 244 (272)
++.++.. .... | ..|..+ +.+...+.++.+.+.|.+.+++.||++.++++
T Consensus 103 ~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~ 182 (214)
T cd07022 103 TAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVR 182 (214)
T ss_pred CCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9986432 2110 1 122221 22223344566778888999999999999998
Q ss_pred HHhhCCceecHHHHHHcCCceeeccC
Q 024122 245 QYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 245 ~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+++ +.+|+++||+++||||+|...
T Consensus 183 ~~~--~~~~~~~~Al~~gLvD~i~~~ 206 (214)
T cd07022 183 ATE--GGVFRGQEAVAAGLADAVGTL 206 (214)
T ss_pred Hhh--cCeeeHHHHHHcCCCcccCCH
Confidence 877 677999999999999999763
No 26
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.82 E-value=3.5e-19 Score=157.67 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=125.8
Q ss_pred EEEEcceeChhH-------HHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHH---hhCCCeEEEEccccch
Q 024122 107 IIFIGQPINSMV-------AQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS---WIKPKVGTVCFGVAAS 176 (272)
Q Consensus 107 II~l~G~Id~~~-------a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~---~~~~pV~tvv~G~AAS 176 (272)
+|.+.|+|.+.. .+.+.+.|..+..++..+.|+|.+|||||++....++++.|+ .+++||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 455666665432 367899999999988889999999999999999988888655 4567999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCC------------CC-------CCcCc----------hhhHHHHHHHHHHHHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQ------------SG-------SGGHV----------EDVKRQVNEAVISRHK 227 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~------------~g-------~~G~~----------~di~~~~~el~~~~~~ 227 (272)
+|++|+++||+ +++.|++.+...... .| ..|.. ++.+.....++.+.+.
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999987432211 01 01211 1112223456677888
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 228 IDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 228 i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
|.+.+++.+++++++++++.+ +.+|+++||+++||||+|...
T Consensus 162 f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~ 203 (211)
T cd07019 162 FITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDF 203 (211)
T ss_pred HHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCH
Confidence 889999999999999988765 689999999999999999864
No 27
>PRK10949 protease 4; Provisional
Probab=99.82 E-value=3.2e-19 Score=179.98 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=127.3
Q ss_pred EEEEcceeChh-------HHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCCeEEEEccccch
Q 024122 107 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS 176 (272)
Q Consensus 107 II~l~G~Id~~-------~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~---~~pV~tvv~G~AAS 176 (272)
+|.+.|.|.+. ..+.+.++|+.+..++..++|+|+||||||++.++..|++.|+.. ++||++++.++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 47788888653 356789999999999999999999999999999999999999765 47999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEE------eeecCC------CC------CCcCc-----------hhhHHHHHHHHHHHHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARI------MLNQPQ------SG------SGGHV-----------EDVKRQVNEAVISRHK 227 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~i------miHqp~------~g------~~G~~-----------~di~~~~~el~~~~~~ 227 (272)
+||||+++||+ +++.|++.. +.|.-. .| ..|.. ++.+.....++...+.
T Consensus 410 ggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~ 487 (618)
T PRK10949 410 GGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKR 487 (618)
T ss_pred HHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999998753 222211 01 01111 1122223445667788
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 228 IDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 228 i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
|.+.+++.++++.++++++.+ ++.|+++||+++||||+++.-
T Consensus 488 F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~ 529 (618)
T PRK10949 488 FITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDF 529 (618)
T ss_pred HHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCCH
Confidence 888899999999999988765 689999999999999999763
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.77 E-value=5.4e-18 Score=159.37 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=108.4
Q ss_pred EEEEcceeChhHHHHHHHHHHHHh-ccCCCCCEEEEEeCCCCcHHHHHHHHHHH---HhhCCCeEEEEccccchHHHHHH
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLA-TIDEDADILMYLNCPGGSIYSVLAIYDCM---SWIKPKVGTVCFGVAASQAAIIL 182 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~-~~d~~~~I~L~INSPGGsV~a~~~I~d~I---~~~~~pV~tvv~G~AASaa~lIa 182 (272)
+|.+.|.|+......+.+.+..+. ...+.+.|+|+||||||++.++..++..| +..+.||++++.++|||+||||+
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 355789998766654444444321 11223789999999999998765555544 44557999999999999999999
Q ss_pred hcCccCcEEeccCcEEeeecCCC------------C------CCcCch------------hhHHHHHHHHHHHHHHHHHH
Q 024122 183 AGGEKGMRYAMPNARIMLNQPQS------------G------SGGHVE------------DVKRQVNEAVISRHKIDRMY 232 (272)
Q Consensus 183 ~ag~~g~R~a~Pna~imiHqp~~------------g------~~G~~~------------di~~~~~el~~~~~~i~~~y 232 (272)
++||+ +++.|.+.++...... | ..|..+ +.+...++++.+.+.|.+.+
T Consensus 174 saAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~V 251 (330)
T PRK11778 174 CVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFV 251 (330)
T ss_pred HhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999765322110 0 122221 12223345566677777788
Q ss_pred HHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 233 AAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 233 a~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
++.++ ..+++++.+ +.+|+++||+++||||+|++.
T Consensus 252 a~~R~--~l~~~~va~-G~v~~g~~Al~~GLVD~Ig~~ 286 (330)
T PRK11778 252 QRYRP--QLDIDKVAT-GEHWYGQQALELGLVDEIQTS 286 (330)
T ss_pred HhcCC--cCCHHHHHh-CCCcCHHHHHHCCCCCcCCCH
Confidence 88775 223444444 567899999999999999864
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.77 E-value=6.5e-18 Score=150.63 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=124.9
Q ss_pred ceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCCeEEEEccccchHHHHHHhcCccC
Q 024122 112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAASQAAIILAGGEKG 188 (272)
Q Consensus 112 G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~---~~pV~tvv~G~AASaa~lIa~ag~~g 188 (272)
+..+....+.+++.|.++..++..+.|+|++|||||.+.+..+|++.|+.+ ++||++++.+ |+|+||+|+++||+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~- 101 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE- 101 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE-
Confidence 344556678999999999998889999999999999999999999999765 4799999987 99999999999999
Q ss_pred cEEeccCcEEeeecCCCC------------------CCcCch---------hh-----HHHHHHHHHHHHHHHHHHHHHh
Q 024122 189 MRYAMPNARIMLNQPQSG------------------SGGHVE---------DV-----KRQVNEAVISRHKIDRMYAAFT 236 (272)
Q Consensus 189 ~R~a~Pna~imiHqp~~g------------------~~G~~~---------di-----~~~~~el~~~~~~i~~~ya~~t 236 (272)
+++.|++.+++...... ..|..+ ++ +...+.++.+.+.|.+.+++.+
T Consensus 102 -I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R 180 (222)
T cd07018 102 -IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASR 180 (222)
T ss_pred -EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999887643211 012211 11 1122344557778888899999
Q ss_pred CCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 237 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 237 g~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+++.++++++.+ ...|+++||++.||||+|...
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~~ 213 (222)
T cd07018 181 GLSPDALEALID-LGGDSAEEALEAGLVDGLAYR 213 (222)
T ss_pred CCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCcH
Confidence 999999998887 678999999999999999864
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.8e-17 Score=154.57 Aligned_cols=156 Identities=22% Similarity=0.213 Sum_probs=131.1
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEc---cccchHHHHHHh
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 183 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~---G~AASaa~lIa~ 183 (272)
++.++|+|++.+++.+.+.|...++++ ...++|.+|+|||-+++.++|.+.|.+++.||+.|+. +.|+|+|+||++
T Consensus 30 vi~i~g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m 108 (436)
T COG1030 30 VIEIDGAIDPASADYLQRALQSAEEEN-AAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILM 108 (436)
T ss_pred EEEecCccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHH
Confidence 466999999999999999999987664 6899999999999999999999999999999888883 389999999999
Q ss_pred cCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCC
Q 024122 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 263 (272)
Q Consensus 184 ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GL 263 (272)
++|. .+|.|.+.++-.+|..+. |+..+-+.+ ...+ ....+-.++.+|++.+..+++.+++.-++++||.+.|+
T Consensus 109 ~~hi--aaMAPgT~iGaa~Pi~~~-g~~~~~~~~---~n~~-~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~v 181 (436)
T COG1030 109 ATHI--AAMAPGTNIGAATPIAGG-GTSAKEANT---TNAA-VAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGV 181 (436)
T ss_pred hcCh--hhhCCCCcccccceecCC-CCCccchhh---HHHH-HHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCc
Confidence 9999 999999999999997643 332222111 1122 23345688999999999999999999999999999999
Q ss_pred ceeeccC
Q 024122 264 IDGILET 270 (272)
Q Consensus 264 ID~I~~~ 270 (272)
||-|..+
T Consensus 182 id~iA~~ 188 (436)
T COG1030 182 IDLIARD 188 (436)
T ss_pred cccccCC
Confidence 9988654
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.61 E-value=3.8e-14 Score=129.50 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=108.9
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccchHHHHHHhcCccCc
Q 024122 110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGM 189 (272)
Q Consensus 110 l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~ 189 (272)
+...|+.+.++.+.+.+.... +.++|.|.||||||.+.++..|.+.|+.+..+++++|...|.|+|++|+++||+
T Consensus 68 i~~~I~i~dse~v~raI~~~~---~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe-- 142 (285)
T PF01972_consen 68 IYRYIDIDDSEFVLRAIREAP---KDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE-- 142 (285)
T ss_pred cceeEcHhhHHHHHHHHHhcC---CCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--
Confidence 456788889999988887653 346899999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcEEeeecCCCCCCcC-----------chhhHH----HH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhh--
Q 024122 190 RYAMPNARIMLNQPQSGSGGH-----------VEDVKR----QV----NEAVISRHKIDRMYAAFTGQPIEKVQQYTE-- 248 (272)
Q Consensus 190 R~a~Pna~imiHqp~~g~~G~-----------~~di~~----~~----~el~~~~~~i~~~ya~~tg~~~e~I~~~~~-- 248 (272)
++|.|++.++--.|..+..-. .+++.+ .+ +.+.++++...+.+.. +++.++.+++.+
T Consensus 143 IvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~--~~~~eka~~ia~~L 220 (285)
T PF01972_consen 143 IVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD--KMDEEKAEEIAEKL 220 (285)
T ss_pred EEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHh
Confidence 999999999988887542110 011110 11 1223333333333433 455555554432
Q ss_pred ------CCceecHHHHHHcCC
Q 024122 249 ------RDRFLSAAEAMEFGL 263 (272)
Q Consensus 249 ------~d~~lsa~EAle~GL 263 (272)
.|+.++.+||+++||
T Consensus 221 ~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 221 SSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred cCCCCCCCCCCCHHHHHHcCC
Confidence 467799999999998
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.45 E-value=1.1e-12 Score=132.17 Aligned_cols=151 Identities=11% Similarity=0.021 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHHhccCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhhC---CCeEEEEccccchHHHHHHhcCccCcEEe
Q 024122 117 MVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIK---PKVGTVCFGVAASQAAIILAGGEKGMRYA 192 (272)
Q Consensus 117 ~~a~~ii~~L~~l~~~d~~~~I~L~INS-PGGsV~a~~~I~d~I~~~~---~pV~tvv~G~AASaa~lIa~ag~~g~R~a 192 (272)
.....++.+|+.+..++..+.|+|.+|+ |||.+....+|+++|+..+ +||+++..+ ++|++|||+++||+ +++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~AD~--I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASFADE--IIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhhCCE--EEE
Confidence 4567899999999999999999999996 6788888899999998764 799998765 57999999999999 999
Q ss_pred ccCcEEeeecCCC------------C------CCcCc---------hhh-----HHHHHHHHHHHHHHHHHHHHHhCCCH
Q 024122 193 MPNARIMLNQPQS------------G------SGGHV---------EDV-----KRQVNEAVISRHKIDRMYAAFTGQPI 240 (272)
Q Consensus 193 ~Pna~imiHqp~~------------g------~~G~~---------~di-----~~~~~el~~~~~~i~~~ya~~tg~~~ 240 (272)
.|.+.++++-... | ..|.. +++ +.....+..+.+.|.+.+++.++++.
T Consensus 153 ~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~ 232 (584)
T TIGR00705 153 NPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPV 232 (584)
T ss_pred CCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 9999886654321 0 01211 122 22233455677788888899999999
Q ss_pred HHHHHHhhCCce-------ecHHHHHHcCCceeeccC
Q 024122 241 EKVQQYTERDRF-------LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 241 e~I~~~~~~d~~-------lsa~EAle~GLID~I~~~ 270 (272)
+++.+..+.-.| +++++|++.||||+|...
T Consensus 233 ~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~ 269 (584)
T TIGR00705 233 QQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSY 269 (584)
T ss_pred HHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCH
Confidence 999887764222 389999999999999753
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.39 E-value=2.7e-12 Score=108.45 Aligned_cols=109 Identities=20% Similarity=0.183 Sum_probs=78.4
Q ss_pred HHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCC------------C------CCcCch--------
Q 024122 159 MSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS------------G------SGGHVE-------- 212 (272)
Q Consensus 159 I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~------------g------~~G~~~-------- 212 (272)
.+..++||++++.++|+|++|+|+++|++ +++.|.+.++...... | ..|..+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 45678899999999999999999999999 9999999875433211 1 012211
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 213 ----DVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 213 ----di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+.+...+.++.+.+.|.+.+++.+|++.++++++.+ +..|+++||+++||||+|...
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~-~~~~~~~~A~~~GLiD~i~~~ 140 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIAD-GGVFTAQQALELGLIDEIGTF 140 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHC-CHEEEHHHHHHTTSSSEETSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHh-hccccHHHHHHcCchhhcCCH
Confidence 122223455667788888899999999999998887 489999999999999999863
No 34
>PRK10949 protease 4; Provisional
Probab=99.36 E-value=8.7e-12 Score=126.31 Aligned_cols=152 Identities=12% Similarity=-0.010 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHH-HHHHHHHHhhC---CCeEEEEccccchHHHHHHhcCccCcEE
Q 024122 116 SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV-LAIYDCMSWIK---PKVGTVCFGVAASQAAIILAGGEKGMRY 191 (272)
Q Consensus 116 ~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~-~~I~d~I~~~~---~pV~tvv~G~AASaa~lIa~ag~~g~R~ 191 (272)
+.....++++|+.++.++..+.|+|++|+|||...+. .+|+++|+..+ +||+++ ...++|.+|||+++||+ ++
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence 3455789999999999999999999999998876554 78999987765 688886 55778999999999999 99
Q ss_pred eccCcEEeeecCCCC------------------CCcCc---------hhhHH-----HHHHHHHHHHHHHHHHHHHhCCC
Q 024122 192 AMPNARIMLNQPQSG------------------SGGHV---------EDVKR-----QVNEAVISRHKIDRMYAAFTGQP 239 (272)
Q Consensus 192 a~Pna~imiHqp~~g------------------~~G~~---------~di~~-----~~~el~~~~~~i~~~ya~~tg~~ 239 (272)
+.|.+.++++-.... ..|.. +++.. ....+..+.+.+.+.+++.++++
T Consensus 171 l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~ 250 (618)
T PRK10949 171 LSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIT 250 (618)
T ss_pred ECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999998876654321 01211 12211 12334556677888889999999
Q ss_pred HHHHHHHhh----C---CceecHHHHHHcCCceeeccC
Q 024122 240 IEKVQQYTE----R---DRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 240 ~e~I~~~~~----~---d~~lsa~EAle~GLID~I~~~ 270 (272)
.+++....+ + ...++|++|++.||||+|...
T Consensus 251 ~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~ 288 (618)
T PRK10949 251 PQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASS 288 (618)
T ss_pred HHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCH
Confidence 999854332 1 123699999999999999754
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.08 E-value=3e-09 Score=91.55 Aligned_cols=139 Identities=15% Similarity=0.188 Sum_probs=99.5
Q ss_pred eeChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHH-----------------HHHHHHHHHHhhCCCeEEEEc
Q 024122 113 PINSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIY-----------------SVLAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 113 ~Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~-----------------a~~~I~d~I~~~~~pV~tvv~ 171 (272)
.++.++.+.+.+.+..++.++..+.|+|.-+ |.|+++. ....++..|..+++|+++.+.
T Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~ 101 (195)
T cd06558 22 ALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN 101 (195)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3678888999999999988766676666554 5566643 225566777788899999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|.++|..++++||. |++.++++|.+..+..|..- +.. .. ..+.+..| .....+++-.++
T Consensus 102 G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p---~~g----~~--------~~l~~~~g--~~~a~~~~l~g~ 162 (195)
T cd06558 102 GAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVP---GGG----GT--------QRLPRLVG--PARARELLLTGR 162 (195)
T ss_pred CeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCC---CCc----HH--------HHHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 99999999988766544320 000 00 11111112 233334444478
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||++.+.
T Consensus 163 ~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 163 RISAEEALELGLVDEVVPD 181 (195)
T ss_pred ccCHHHHHHcCCCCeecCh
Confidence 8999999999999999875
No 36
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.91 E-value=5.4e-08 Score=86.91 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=94.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH---------------HHHHHHHHhhCCCeEEEEcccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV---------------LAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~---------------~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..+++||++.+.|.|
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 110 (222)
T PRK05869 31 LTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYA 110 (222)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEe
Confidence 778888999999999887766665554311 334554321 2456677888999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
..+|.-++++||. |++.++++|.+-....|... +..- . ..+.+..| .....+++-.+.+++
T Consensus 111 ~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~----~--------~~l~~~ig--~~~a~~l~ltg~~~~ 171 (222)
T PRK05869 111 LGAGLTLALAADW--RVSGDNVKFGATEILAGLAP---SGDG----M--------ARLTRAAG--PSRAKELVFSGRFFD 171 (222)
T ss_pred ecHHHHHHHhCCE--EEecCCCEEcCchhccCCCC---CccH----H--------HHHHHHhC--HHHHHHHHHcCCCcC
Confidence 9999999999999 99999998876444333211 1000 0 00111122 233344444467999
Q ss_pred HHHHHHcCCceeeccCC
Q 024122 255 AAEAMEFGLIDGILETE 271 (272)
Q Consensus 255 a~EAle~GLID~I~~~~ 271 (272)
++||+++||||++.+.+
T Consensus 172 a~eA~~~Glv~~vv~~~ 188 (222)
T PRK05869 172 AEEALALGLIDEMVAPD 188 (222)
T ss_pred HHHHHHCCCCCEeeCch
Confidence 99999999999998753
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.89 E-value=4.7e-08 Score=88.63 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=94.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHH--------------HHHHHHHHHhhCCCeEEEEccccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGVAA 175 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~----INSPGGsV~a--------------~~~I~d~I~~~~~pV~tvv~G~AA 175 (272)
++.++.+.+.+.+..++.++..+.|+|. .=|.|+++.. ...+++.|..+++|+++.+.|.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 108 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV 108 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 7888999999999998876656665553 1244555432 234666777888999999999999
Q ss_pred hHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecH
Q 024122 176 SQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 255 (272)
Q Consensus 176 Saa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa 255 (272)
.+|..++++||. |++.++++|.+.....|.....--.. .+. +..| .....+++--+..+++
T Consensus 109 GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~-------~l~--------~~~G--~~~a~~l~l~g~~~~a 169 (259)
T PRK06688 109 GVGVSLALACDL--VYASESAKFSLPFAKLGLCPDAGGSA-------LLP--------RLIG--RARAAEMLLLGEPLSA 169 (259)
T ss_pred cHHHHHHHhCCE--EEecCCCEecCchhhcCCCCCcchhh-------HHH--------HHhh--HHHHHHHHHhCCccCH
Confidence 999999999999 99999999977655444321000000 011 1111 1222333333568999
Q ss_pred HHHHHcCCceeeccC
Q 024122 256 AEAMEFGLIDGILET 270 (272)
Q Consensus 256 ~EAle~GLID~I~~~ 270 (272)
+||+++||||+|.+.
T Consensus 170 ~eA~~~Glv~~v~~~ 184 (259)
T PRK06688 170 EEALRIGLVNRVVPA 184 (259)
T ss_pred HHHHHcCCcceecCH
Confidence 999999999999864
No 38
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=7.8e-08 Score=88.41 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=94.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhhCCCeEEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV-------------------LAIYDCMSWIKPKVGTVC 170 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~-------------------~~I~d~I~~~~~pV~tvv 170 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||++.+
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 120 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV 120 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788888899999998886655554444211 445555421 245667788899999999
Q ss_pred ccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCC-cCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Q 024122 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG-GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 249 (272)
Q Consensus 171 ~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~-G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~ 249 (272)
.|.|..+|.-++++||. |++.++++|.+.....|.. +..--.. . +.+..|. ....+++-.
T Consensus 121 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~~~-------~--------l~~~vG~--~~a~~l~lt 181 (277)
T PRK08258 121 DGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAGADMGACA-------L--------LPRIIGQ--GRASELLYT 181 (277)
T ss_pred CCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCCCCchHHH-------H--------HHHHhCH--HHHHHHHHc
Confidence 99999999999999999 9999999998766655432 1100000 0 1111121 223334444
Q ss_pred CceecHHHHHHcCCceeeccC
Q 024122 250 DRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 250 d~~lsa~EAle~GLID~I~~~ 270 (272)
+..++++||+++||||+|.+.
T Consensus 182 g~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 182 GRSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred CCCCCHHHHHHcCCCcEecCH
Confidence 678999999999999999864
No 39
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=6.4e-08 Score=87.99 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=95.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH-----------------HHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~-----------------~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..+++||++.+.|
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (257)
T PRK06495 27 LSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNG 106 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 788888999999999887665555554311 334444321 23455677888999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
.|..+|.-++++||. |++.++++|.+-....|..|-.. .+.+..| .....+++-.+..
T Consensus 107 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~------------------~l~~~~g--~~~a~~lll~g~~ 164 (257)
T PRK06495 107 PALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGGK------------------HAMRLFG--HSLTRRMMLTGYR 164 (257)
T ss_pred eeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccHH------------------HHHHHhC--HHHHHHHHHcCCe
Confidence 999999999999999 99999999977555544432110 0111222 3334445445788
Q ss_pred ecHHHHHHcCCceeeccC
Q 024122 253 LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~ 270 (272)
++++||+++||||+|.+.
T Consensus 165 ~~a~eA~~~GLv~~vv~~ 182 (257)
T PRK06495 165 VPAAELYRRGVIEACLPP 182 (257)
T ss_pred eCHHHHHHcCCcceecCH
Confidence 999999999999999864
No 40
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.84 E-value=1e-07 Score=86.80 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=93.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE-----EeCCCCcHHH--------------HHHHHHHHHhhCCCeEEEEcccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMY-----LNCPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~-----INSPGGsV~a--------------~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++.++.+.+.+.+..++.++..+.|+|. .=|.|+++.. ...++..|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (261)
T PRK03580 26 IDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYA 105 (261)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECCee
Confidence 7788888999999988876655555553 1245566542 12345567788899999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
..+|.-++++||. |++.++++|.+-....|.. -+..- ... +.+..| .....+++-.+..++
T Consensus 106 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~---p~~g~----~~~--------l~~~vg--~~~a~~l~l~g~~~~ 166 (261)
T PRK03580 106 FGGGFELALAADF--IVCADNASFALPEAKLGIV---PDSGG----VLR--------LPKRLP--PAIANEMVMTGRRMD 166 (261)
T ss_pred ehHHHHHHHHCCE--EEecCCCEEeCcccccCcC---CCccH----HHH--------HHHHhC--HHHHHHHHHhCCccC
Confidence 9999999999999 9999999986543333321 11100 000 111112 233334443467899
Q ss_pred HHHHHHcCCceeeccCC
Q 024122 255 AAEAMEFGLIDGILETE 271 (272)
Q Consensus 255 a~EAle~GLID~I~~~~ 271 (272)
++||+++||||+|.+.+
T Consensus 167 a~eA~~~Glv~~vv~~~ 183 (261)
T PRK03580 167 AEEALRWGIVNRVVPQA 183 (261)
T ss_pred HHHHHHcCCCcEecCHh
Confidence 99999999999998753
No 41
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=1.1e-07 Score=86.45 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHH---------------HHHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-----NSPGGsV~a---------------~~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 110 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGW 110 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 78888999999999988766556555422 134555432 1235566778889999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|..+|.-++++||. |++.++++|.+-....|. +.... . ..+.+..| .....+++-.+..+
T Consensus 111 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~---p~~~~-~------------~~l~~~iG--~~~a~~l~l~g~~~ 170 (256)
T PRK06143 111 CLGGGLELAAACDL--RIAAHDAQFGMPEVRVGI---PSVIH-A------------ALLPRLIG--WARTRWLLLTGETI 170 (256)
T ss_pred EeehhHHHHHhCCE--EEecCCCEEeCCccccCC---CCccH-H------------HHHHHhcC--HHHHHHHHHcCCcC
Confidence 99999999999999 999999998764433332 11110 0 01222223 23344444457789
Q ss_pred cHHHHHHcCCceeeccC
Q 024122 254 SAAEAMEFGLIDGILET 270 (272)
Q Consensus 254 sa~EAle~GLID~I~~~ 270 (272)
+|+||+++||||+|++.
T Consensus 171 ~a~eA~~~Glv~~vv~~ 187 (256)
T PRK06143 171 DAAQALAWGLVDRVVPL 187 (256)
T ss_pred CHHHHHHCCCcCeecCH
Confidence 99999999999999875
No 42
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=1.9e-07 Score=85.25 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=95.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH-------------HHHHHHHHHhhCCCeEEEEccccch
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a-------------~~~I~d~I~~~~~pV~tvv~G~AAS 176 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 107 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT 107 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 788899999999999887665565555321 45666542 1245667888899999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 256 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~ 256 (272)
+|.-++++||. |++.++++|.+-....|.. -+..- . ..+.+..| .....+++-.+..|+|+
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~r~vG--~~~a~~l~ltg~~~~a~ 168 (258)
T PRK06190 108 GGLELALACDI--LIASERARFADTHARVGIL---PGWGL----S--------VRLPQKVG--IGRARRMSLTGDFLDAA 168 (258)
T ss_pred HHHHHHHhCCE--EEEeCCCEEECcccccCcC---CCccH----H--------HHHHHHhC--HHHHHHHHHhCCccCHH
Confidence 99999999999 9999999987543333321 11100 0 01111122 23334444446789999
Q ss_pred HHHHcCCceeeccC
Q 024122 257 EAMEFGLIDGILET 270 (272)
Q Consensus 257 EAle~GLID~I~~~ 270 (272)
||+++||||++.+.
T Consensus 169 eA~~~GLv~~vv~~ 182 (258)
T PRK06190 169 DALRAGLVTEVVPH 182 (258)
T ss_pred HHHHcCCCeEecCH
Confidence 99999999999864
No 43
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.80 E-value=7.6e-08 Score=85.09 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=104.9
Q ss_pred ccCcE--EEEcceeChhHHHHHHHHHHHHhccCCCCCEE-EEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccchHHH
Q 024122 103 FRNRI--IFIGQPINSMVAQRAISQLVTLATIDEDADIL-MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179 (272)
Q Consensus 103 ~~~rI--I~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~-L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~ 179 (272)
+..|. +.+++++-+..+....+.|.. +.+....+ +.+|||||++..++++-..|+..+..+..--..+|+|++.
T Consensus 72 ~dgr~l~VvVse~~a~~da~sal~~lir---~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCp 148 (245)
T COG3904 72 LDGRQLPVVVSEPGANVDAASALGRLIR---KAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACP 148 (245)
T ss_pred ccCceeeEEEcCCCCCccHHHHHHHHHh---ccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccch
Confidence 34454 346666655444444444443 22233334 7899999999999999999999988876555669999999
Q ss_pred HHHhcCccCcEEeccCcEEeeecCCCCCCcCchhh-HHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHhh----CCcee
Q 024122 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-KRQVNEAVI-SRHKIDRMYAAFTGQPIEKVQQYTE----RDRFL 253 (272)
Q Consensus 180 lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di-~~~~~el~~-~~~~i~~~ya~~tg~~~e~I~~~~~----~d~~l 253 (272)
+++++|.. |++.+.+.+++||+..+.. .+-+ ..+++...+ .... ...|-...|...--++.+.. +=+++
T Consensus 149 l~fagGvr--Rvve~~ayiGVHq~~~~g~--~~r~~~~~a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir~l 223 (245)
T COG3904 149 LMFAGGVR--RVVEDFAYIGVHQITTTGR--RERIVNGKAKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIRQL 223 (245)
T ss_pred hhhhccee--eeecccceeeeeeccccCC--ccccCcHhhhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhhhh
Confidence 99999999 9999999999999986422 2101 111111111 1111 23366667887776665443 33789
Q ss_pred cHHHHHHcCCcee
Q 024122 254 SAAEAMEFGLIDG 266 (272)
Q Consensus 254 sa~EAle~GLID~ 266 (272)
+.+|-.++.|+.+
T Consensus 224 ~~kem~~~~L~t~ 236 (245)
T COG3904 224 GLKEMTAMKLVTS 236 (245)
T ss_pred hHHHHhhhccccc
Confidence 9999999999865
No 44
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.80 E-value=1.9e-07 Score=84.84 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=94.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH------------------HHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~------------------~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.+.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 106 (260)
T PRK07511 27 LHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVE 106 (260)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 78888899999999988766555555421 1345554321 2345567778899999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|..++++||. |++.++++|.+.....|.. -+..- ...+ .+.. ......+++-.+.
T Consensus 107 G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~~l--------~~~v--g~~~a~~l~ltg~ 167 (260)
T PRK07511 107 GAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLT---PDGGG----SWFL--------ARAL--PRQLATELLLEGK 167 (260)
T ss_pred CeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcC---CCchH----HHHH--------HHHh--CHHHHHHHHHhCC
Confidence 9999999999999999 9999999987755444322 11000 0001 1111 2233344444467
Q ss_pred eecHHHHHHcCCceeeccCC
Q 024122 252 FLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~~ 271 (272)
.++++||+++||||+|.+.+
T Consensus 168 ~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 168 PISAERLHALGVVNRLAEPG 187 (260)
T ss_pred CCCHHHHHHcCCccEeeCch
Confidence 89999999999999998753
No 45
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.79 E-value=1.4e-07 Score=86.13 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=92.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe------CCCCcHHHH--------------HHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYSV--------------LAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN------SPGGsV~a~--------------~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.+..++.++ .+.|+|.=+ |.|+++... ..++..|..+++||++.+.|.
T Consensus 28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~ 106 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS 106 (261)
T ss_pred CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence 78888899999999888654 655554321 445555321 235666778889999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|..+|.-++++||. |++.++++|.+-....|.. -+..- .. .+.+..| .....+++-.+..+
T Consensus 107 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---~~~g~----~~--------~l~~~vg--~~~a~~l~l~g~~~ 167 (261)
T PRK11423 107 VWGGAFELIMSCDL--IIAASTSTFAMTPANLGVP---YNLSG----IL--------NFTNDAG--FHIVKEMFFTASPI 167 (261)
T ss_pred EechHHHHHHhCCE--EEecCCCEecCchhhcCCC---CCccH----HH--------HHHHHhH--HHHHHHHHHcCCCc
Confidence 99999999999999 9999999886644433321 01000 00 1111112 23333444446789
Q ss_pred cHHHHHHcCCceeeccC
Q 024122 254 SAAEAMEFGLIDGILET 270 (272)
Q Consensus 254 sa~EAle~GLID~I~~~ 270 (272)
+++||+++||||+|.+.
T Consensus 168 ~a~eA~~~GLv~~vv~~ 184 (261)
T PRK11423 168 TAQRALAVGILNHVVEV 184 (261)
T ss_pred CHHHHHHcCCcCcccCH
Confidence 99999999999999874
No 46
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.79 E-value=1.4e-07 Score=85.71 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=95.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH-------------HHHHHHHHHhhCCCeEEEEccccch
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a-------------~~~I~d~I~~~~~pV~tvv~G~AAS 176 (272)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG 105 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence 78888899999999888766555555421 144565532 1235667788899999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 256 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~ 256 (272)
+|.-++++||. |++.++++|.+.....|.. -+..- . ..+.+..| .....+++-.+..|+++
T Consensus 106 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~ig--~~~a~~l~l~g~~~~a~ 166 (255)
T PRK09674 106 AGCELALLCDI--VIAGENARFGLPEITLGIM---PGAGG----T--------QRLIRSVG--KSLASQMVLTGESITAQ 166 (255)
T ss_pred HHHHHHHhCCE--EEecCCCEEeCchhhcCCC---CCccH----H--------HHHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999999 9999999987655444321 11000 0 01111222 23333444456789999
Q ss_pred HHHHcCCceeeccCC
Q 024122 257 EAMEFGLIDGILETE 271 (272)
Q Consensus 257 EAle~GLID~I~~~~ 271 (272)
||+++||||+|.+.+
T Consensus 167 eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 167 QAQQAGLVSEVFPPE 181 (255)
T ss_pred HHHHcCCCcEecChH
Confidence 999999999998753
No 47
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.79 E-value=1.4e-07 Score=86.33 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=92.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH-------------------------HHHHHHHHhhCC
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV-------------------------LAIYDCMSWIKP 164 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~-------------------------~~I~d~I~~~~~ 164 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 109 (272)
T PRK06210 30 WTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRK 109 (272)
T ss_pred CCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCC
Confidence 788888899999998876655555444311 234554321 122456778889
Q ss_pred CeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 024122 165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 244 (272)
Q Consensus 165 pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~ 244 (272)
||++.+.|.|..+|.-|+++||. |++.++++|.+..+..|..- +..... .+ .+.. ......
T Consensus 110 PvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p---~~g~~~----~l--------~~~i--g~~~a~ 170 (272)
T PRK06210 110 PVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLIA---EHGISW----IL--------PRLV--GHANAL 170 (272)
T ss_pred CEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCCC---CCchhh----hh--------Hhhh--CHHHHH
Confidence 99999999999999999999999 99999999987655544210 100000 00 0111 223344
Q ss_pred HHhhCCceecHHHHHHcCCceeeccC
Q 024122 245 QYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 245 ~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+++=.+..++|+||+++||||+|.+.
T Consensus 171 ~l~ltg~~~~a~eA~~~Glv~~vv~~ 196 (272)
T PRK06210 171 DLLLSARTFYAEEALRLGLVNRVVPP 196 (272)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCH
Confidence 44444678899999999999999864
No 48
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.78 E-value=2.4e-07 Score=83.99 Aligned_cols=139 Identities=13% Similarity=0.052 Sum_probs=95.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------HHHHHHHHhhCCCeEEEEccccchH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVAASQ 177 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------~~I~d~I~~~~~pV~tvv~G~AASa 177 (272)
++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++... ..++..|..+++||++.+.|.|..+
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGG 108 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceech
Confidence 788888999999998887665565555311 445665431 2567778889999999999999999
Q ss_pred HHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHH
Q 024122 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 257 (272)
Q Consensus 178 a~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~E 257 (272)
|..++++||. |++.++++|.+.....|.. -+..- ... +.+..| .....+++-.+.-|+++|
T Consensus 109 G~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~~--------l~~~~g--~~~a~~llltg~~~~a~e 169 (249)
T PRK07110 109 GLVLGLYADI--VVLSRESVYTANFMKYGFT---PGMGA----TAI--------LPEKLG--LALGQEMLLTARYYRGAE 169 (249)
T ss_pred HHHHHHhCCE--EEEeCCCEecCchhccCCC---CCchH----HHH--------HHHHhC--HHHHHHHHHcCCccCHHH
Confidence 9999999999 9999999886544333321 11100 000 111122 333445554567899999
Q ss_pred HHHcCCceeeccCC
Q 024122 258 AMEFGLIDGILETE 271 (272)
Q Consensus 258 Ale~GLID~I~~~~ 271 (272)
|+++||||+|.+.+
T Consensus 170 A~~~Glv~~vv~~~ 183 (249)
T PRK07110 170 LKKRGVPFPVLPRA 183 (249)
T ss_pred HHHcCCCeEEeChH
Confidence 99999999998753
No 49
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=2.4e-07 Score=84.42 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=93.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH-------------HHHHHHHHHhhCCCeEEEEccccch
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a-------------~~~I~d~I~~~~~pV~tvv~G~AAS 176 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 78888899999999888766555555431 144555432 1235566778889999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 256 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~ 256 (272)
+|.-++++||. |++.++++|.+-....|.. -+..-. ..+.+..| .....+++-.+..|+++
T Consensus 112 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG--~~~a~~l~l~g~~~~a~ 172 (261)
T PRK08138 112 GGCELAMHADI--IVAGESASFGQPEIKVGLM---PGAGGT------------QRLVRAVG--KFKAMRMALTGCMVPAP 172 (261)
T ss_pred HHHHHHHhCCE--EEecCCCEeeCcccccccC---CCCcHH------------HHHHHHhC--HHHHHHHHHcCCCCCHH
Confidence 99999999999 9999999987644433321 010000 00111222 22333444446789999
Q ss_pred HHHHcCCceeeccCC
Q 024122 257 EAMEFGLIDGILETE 271 (272)
Q Consensus 257 EAle~GLID~I~~~~ 271 (272)
||+++||||+|.+.+
T Consensus 173 eA~~~Glv~~vv~~~ 187 (261)
T PRK08138 173 EALAIGLVSEVVEDE 187 (261)
T ss_pred HHHHCCCCcEecCch
Confidence 999999999998653
No 50
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.77 E-value=1.2e-07 Score=85.08 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=93.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCC------CCcH---------------HHHHHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSI---------------YSVLAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSP------GGsV---------------~a~~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++.++..+ + +.+.+. |+++ .....++..|..+++|+++.+.|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~-v-vv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK-V-VVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES-E-EEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc-E-EEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 78889999999999998876556 3 333433 4454 23456778888899999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
.|..+|.-++++||. |++.+++.|.+.....|..-..--.. .+.+.+ |. ....+++-.+..
T Consensus 100 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~-------~l~r~~--------g~--~~a~~l~l~g~~ 160 (245)
T PF00378_consen 100 HAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTF-------RLPRLI--------GP--SRARELLLTGEP 160 (245)
T ss_dssp EEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHH-------HHHHHH--------HH--HHHHHHHHHTCE
T ss_pred cccccccccccccce--EEeecccceeeeecccCccccccccc-------ccceee--------ec--cccccccccccc
Confidence 999999999999999 99999999766554433221110111 011111 11 111222222568
Q ss_pred ecHHHHHHcCCceeeccCC
Q 024122 253 LSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~~ 271 (272)
++|+||+++||||+|++.+
T Consensus 161 ~~a~eA~~~Glv~~v~~~~ 179 (245)
T PF00378_consen 161 ISAEEALELGLVDEVVPDE 179 (245)
T ss_dssp EEHHHHHHTTSSSEEESGG
T ss_pred chhHHHHhhcceeEEcCch
Confidence 9999999999999998764
No 51
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.77 E-value=2.3e-07 Score=84.33 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=93.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHHH--------------HHHHHHHHhhCCCeEEEEcccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYSV--------------LAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-----NSPGGsV~a~--------------~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++..- ..+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67788889999998888766556555532 1345665431 2355677888999999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
..+|.-++++||. |++.++++|.+-.+..|.. +..... ..+.+..|. ....+++-.+..|+
T Consensus 106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~--~~~~~~-------------~~l~~~vG~--~~A~~lll~g~~~~ 166 (256)
T TIGR03210 106 IGGGNVLVTICDL--TIASEKAQFGQVGPKVGSV--DPGYGT-------------ALLARVVGE--KKAREIWYLCRRYT 166 (256)
T ss_pred ehhhHHHHHhCCE--EEEeCCCEEeccccccccc--CCccHH-------------HHHHHHhCH--HHHHHHHHhCCCcC
Confidence 9999999999999 9999999987644443321 000000 011122222 22233333367899
Q ss_pred HHHHHHcCCceeeccC
Q 024122 255 AAEAMEFGLIDGILET 270 (272)
Q Consensus 255 a~EAle~GLID~I~~~ 270 (272)
|+||+++||||+|.+.
T Consensus 167 a~eA~~~Glv~~vv~~ 182 (256)
T TIGR03210 167 AQEALAMGLVNAVVPH 182 (256)
T ss_pred HHHHHHcCCceeeeCH
Confidence 9999999999999864
No 52
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.77 E-value=1.9e-07 Score=84.84 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=91.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCC-------CCcHHH---------------HHHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLNCP-------GGSIYS---------------VLAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSP-------GGsV~a---------------~~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.+..++.++..+.|+| .+. |+++.. ...++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYAVIL--TGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEE--EcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 688888899999988887655554443 343 344421 12456678888999999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.++++|.+.....|.. -+..-. . .+.+..|. ....+++-.+.
T Consensus 106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vG~--~~a~~l~l~g~ 166 (260)
T PRK05809 106 GFALGGGCELSMACDI--RIASEKAKFGQPEVGLGIT---PGFGGT----Q--------RLARIVGP--GKAKELIYTGD 166 (260)
T ss_pred CeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCCC---CCccHH----H--------HHHHHhCH--HHHHHHHHhCC
Confidence 9999999999999999 9999999987654443322 111100 0 01111221 22333333456
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||+|.+.
T Consensus 167 ~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK05809 167 MINAEEALRIGLVNKVVEP 185 (260)
T ss_pred CCCHHHHHHcCCCCcccCh
Confidence 8999999999999999864
No 53
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=2.3e-07 Score=84.12 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=93.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH----------------HHHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a----------------~~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~ 104 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGA 104 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 78888899999999888766555555431 144566532 1235566778889999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|..+|.-++++||. |++.++++|.+-....|.. -+..-. .. +.+..| .....+++-.+..+
T Consensus 105 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~~~vG--~~~a~~l~l~g~~~ 165 (257)
T PRK07658 105 ALGGGLELAMSCHI--RFATESAKLGLPELNLGLI---PGFAGT----QR--------LPRYVG--KAKALEMMLTSEPI 165 (257)
T ss_pred eeeHHHHHHHhCCE--EEecCCCcccCcccccCCC---CCCcHH----HH--------HHHHhC--HHHHHHHHHcCCCc
Confidence 99999999999999 9999999887644333321 011000 00 111112 22233444446789
Q ss_pred cHHHHHHcCCceeeccCC
Q 024122 254 SAAEAMEFGLIDGILETE 271 (272)
Q Consensus 254 sa~EAle~GLID~I~~~~ 271 (272)
+++||+++||||+|.+.+
T Consensus 166 ~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 166 TGAEALKWGLVNGVFPEE 183 (257)
T ss_pred CHHHHHHcCCcCeecChh
Confidence 999999999999998753
No 54
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=2.3e-07 Score=84.67 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=92.5
Q ss_pred eChhHHHHHHHHHHHHhccCC-CCCEEEEEe----CCCCcHHH--------------H-------HHHHHHHHhhCCCeE
Q 024122 114 INSMVAQRAISQLVTLATIDE-DADILMYLN----CPGGSIYS--------------V-------LAIYDCMSWIKPKVG 167 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~-~~~I~L~IN----SPGGsV~a--------------~-------~~I~d~I~~~~~pV~ 167 (272)
++.++.+.+.+.|..++.+++ .+.|+|.=. |.|+++.. . ..++..|..+++||+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 107 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIV 107 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 788888999999988876543 454554321 34455432 1 134566778889999
Q ss_pred EEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 024122 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 247 (272)
Q Consensus 168 tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~ 247 (272)
+.+.|.|..+|.-++++||. |++.+++.|.+..+..|..- +..-. ..+.+.+ | .....+++
T Consensus 108 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~p---~~g~~----~~l~~~v--------g--~~~a~~l~ 168 (266)
T PRK05981 108 TAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLVP---DGGST----WLLPRLV--------G--KARAMELS 168 (266)
T ss_pred EEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCCC---CccHH----HHHHHHh--------H--HHHHHHHH
Confidence 99999999999999999999 99999999976655544311 11000 0011111 1 12223333
Q ss_pred hCCceecHHHHHHcCCceeeccCC
Q 024122 248 ERDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 248 ~~d~~lsa~EAle~GLID~I~~~~ 271 (272)
-.+..|+++||+++||||+|.+.+
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 169 LLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred HhCCCcCHHHHHHcCCceEeeCHh
Confidence 346789999999999999998753
No 55
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=3.3e-07 Score=83.43 Aligned_cols=139 Identities=13% Similarity=0.102 Sum_probs=92.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH---------------HHHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a---------------~~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.+..++.++..+.|+|.=. |.|+++.. ...++..|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 105 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGY 105 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 788888999999998887665555554321 33455432 1234566778889999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|..+|.-++++||. |++.++++|.+-....|.. -+..-. ..+.+..|. ....+++=.+..+
T Consensus 106 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~iG~--~~a~~l~l~g~~~ 166 (258)
T PRK09076 106 AMGGGLECALACDI--RIAEEQAQMALPEASVGLL---PCAGGT------------QNLPWLVGE--GWAKRMILCGERV 166 (258)
T ss_pred EecHHHHHHHhCCE--EEecCCCEeeCcccccCCC---CCccHH------------HHHHHHhCH--HHHHHHHHcCCcC
Confidence 99999999999999 9999999987644433321 010000 001111122 2223333345789
Q ss_pred cHHHHHHcCCceeeccCC
Q 024122 254 SAAEAMEFGLIDGILETE 271 (272)
Q Consensus 254 sa~EAle~GLID~I~~~~ 271 (272)
+++||+++||||+|++.+
T Consensus 167 ~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 167 DAATALRIGLVEEVVEKG 184 (258)
T ss_pred CHHHHHHCCCCceecCch
Confidence 999999999999998753
No 56
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=2.1e-07 Score=84.41 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=92.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH--------------HHHHHHHHHhhCCCeEEEEccccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGVAA 175 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a--------------~~~I~d~I~~~~~pV~tvv~G~AA 175 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|.|.
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (251)
T PRK06023 30 ITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAI 109 (251)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCcee
Confidence 78888899999999888765555554421 134455431 124556778888999999999999
Q ss_pred hHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecH
Q 024122 176 SQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 255 (272)
Q Consensus 176 Saa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa 255 (272)
.+|.-++++||. |++.++++|.+.....|.. -+..-. ..+.+..| .....+++-.++.+++
T Consensus 110 GgG~~la~acD~--ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~~g--~~~a~~l~l~g~~~~a 170 (251)
T PRK06023 110 GIGTTIHLHCDL--TFASPRSLFRTPFVDLALV---PEAGSS------------LLAPRLMG--HQRAFALLALGEGFSA 170 (251)
T ss_pred cHHHHHHHhCCE--EEEeCCCEecCcccccCCC---CCchHH------------HHHHHHHh--HHHHHHHHHhCCCCCH
Confidence 999999999999 9999999997654443321 111000 00111112 2223333334678999
Q ss_pred HHHHHcCCceeeccC
Q 024122 256 AEAMEFGLIDGILET 270 (272)
Q Consensus 256 ~EAle~GLID~I~~~ 270 (272)
+||+++||||+|.+.
T Consensus 171 ~eA~~~Glv~~vv~~ 185 (251)
T PRK06023 171 EAAQEAGLIWKIVDE 185 (251)
T ss_pred HHHHHcCCcceeeCH
Confidence 999999999999864
No 57
>PLN02600 enoyl-CoA hydratase
Probab=98.75 E-value=3.1e-07 Score=83.28 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=92.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH---------------HHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV---------------LAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a~---------------~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.+..++.++..+.|+|.=. |.|+++..- ..++..|..+++||++.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 788888999999998887765565555311 345555421 123455677889999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|..+|.-++++||. |++.++++|.+-....|.. -+..- ... +.+..| .....+++-.+..|
T Consensus 99 a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~~--------l~~~~G--~~~a~~l~ltg~~~ 159 (251)
T PLN02600 99 ALGGGLELALSCDL--RICGEEAVFGLPETGLAII---PGAGG----TQR--------LPRLVG--RSRAKELIFTGRRI 159 (251)
T ss_pred ecchhHHHHHhCCE--EEeeCCCEEeCcccccCcC---CCchH----HHH--------HHHHhC--HHHHHHHHHhCCcc
Confidence 99999999999999 9999999987643333221 11100 000 111112 22233333345789
Q ss_pred cHHHHHHcCCceeeccCC
Q 024122 254 SAAEAMEFGLIDGILETE 271 (272)
Q Consensus 254 sa~EAle~GLID~I~~~~ 271 (272)
+++||+++||||+|.+.+
T Consensus 160 ~a~eA~~~Glv~~vv~~~ 177 (251)
T PLN02600 160 GAREAASMGLVNYCVPAG 177 (251)
T ss_pred CHHHHHHcCCCcEeeChh
Confidence 999999999999998653
No 58
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=2.4e-07 Score=85.98 Aligned_cols=138 Identities=15% Similarity=0.145 Sum_probs=92.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH--------------------------------HHHHH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV--------------------------------LAIYD 157 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~--------------------------------~~I~d 157 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..++.
T Consensus 28 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (296)
T PRK08260 28 FTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTL 107 (296)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 788888899999988877665554444211 344554321 12456
Q ss_pred HHHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 024122 158 CMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 237 (272)
Q Consensus 158 ~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg 237 (272)
.|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. -+..-. .. +.+..|
T Consensus 108 ~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~r~vG 170 (296)
T PRK08260 108 RIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIV---PEAASS----WF--------LPRLVG 170 (296)
T ss_pred HHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcC---CCcchh----hh--------HHHhhC
Confidence 677788999999999999999999999999 9999999997765544321 110000 00 111112
Q ss_pred CCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 238 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 238 ~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
.....+++-.+..++++||+++||||+|.+.
T Consensus 171 --~~~A~~llltg~~~~a~eA~~~GLv~~vv~~ 201 (296)
T PRK08260 171 --LQTALEWVYSGRVFDAQEALDGGLVRSVHPP 201 (296)
T ss_pred --HHHHHHHHHcCCccCHHHHHHCCCceeecCH
Confidence 2233344444678999999999999999864
No 59
>PLN02888 enoyl-CoA hydratase
Probab=98.74 E-value=3.6e-07 Score=83.62 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=92.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------HHHHHHHHhhCCCeEEEEccccchH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVAASQ 177 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------~~I~d~I~~~~~pV~tvv~G~AASa 177 (272)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++... ..++..|..+++||++.+.|.|..+
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 788888999999999887665555554311 334565421 2345567788899999999999999
Q ss_pred HHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHH
Q 024122 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 257 (272)
Q Consensus 178 a~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~E 257 (272)
|..++++||. |++.+++.|.+-....|.. -+..- . ..+.+..| .....+++-.+..|+++|
T Consensus 114 G~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~vG--~~~a~~l~ltg~~~~a~e 174 (265)
T PLN02888 114 GFEIALACDI--LVASRGAKFIDTHAKFGIF---PSWGL----S--------QKLSRIIG--ANRAREVSLTAMPLTAET 174 (265)
T ss_pred HHHHHHhCCE--EEecCCCEecCccccccCC---CCccH----h--------hHHHHHhC--HHHHHHHHHhCCccCHHH
Confidence 9999999999 9999999986643333321 11100 0 01111222 222333333457899999
Q ss_pred HHHcCCceeeccC
Q 024122 258 AMEFGLIDGILET 270 (272)
Q Consensus 258 Ale~GLID~I~~~ 270 (272)
|+++||||+|.+.
T Consensus 175 A~~~Glv~~vv~~ 187 (265)
T PLN02888 175 AERWGLVNHVVEE 187 (265)
T ss_pred HHHcCCccEeeCh
Confidence 9999999999864
No 60
>PLN02921 naphthoate synthase
Probab=98.73 E-value=3.4e-07 Score=86.54 Aligned_cols=138 Identities=19% Similarity=0.198 Sum_probs=94.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH----------------HHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a~----------------~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.||++... ..++..|..+++||++.+.|
T Consensus 91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG 170 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG 170 (327)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 788899999999999887655544443211 345665321 12455677788999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
.|..+|.-|+++||. |++.+++.|.+..+..|.... ..... . +.+..| .....+++-.+..
T Consensus 171 ~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p~--~gg~~-----~--------L~rliG--~~~A~ellltG~~ 231 (327)
T PLN02921 171 YAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFDA--GYGSS-----I--------MARLVG--QKKAREMWFLARF 231 (327)
T ss_pred EEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCC--ccHHH-----H--------HHHHhC--HHHHHHHHHcCCc
Confidence 999999999999999 999999999886665543210 00000 0 111112 2333444444678
Q ss_pred ecHHHHHHcCCceeeccC
Q 024122 253 LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~ 270 (272)
|+|+||+++||||+|.+.
T Consensus 232 ~~A~eA~~~GLV~~vv~~ 249 (327)
T PLN02921 232 YTASEALKMGLVNTVVPL 249 (327)
T ss_pred CCHHHHHHCCCceEEeCH
Confidence 999999999999999864
No 61
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.73 E-value=3e-07 Score=84.44 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=91.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH--------------------------HHHHHHHHhhC
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV--------------------------LAIYDCMSWIK 163 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~--------------------------~~I~d~I~~~~ 163 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|-|+++... ..+++.|..++
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (275)
T PLN02664 32 LSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCR 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 78888899999999888766555444321 1334554321 12445677888
Q ss_pred CCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 024122 164 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV 243 (272)
Q Consensus 164 ~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I 243 (272)
+||++.+.|.|..+|.-|+++||. |++.++++|.+-....|..- +... ...+ .+..| ....
T Consensus 112 kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~l--------~~~vG--~~~A 172 (275)
T PLN02664 112 KPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAITA---DLGT----LQRL--------PSIVG--YGNA 172 (275)
T ss_pred CCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCCCC---CccH----HHHH--------HHHhC--HHHH
Confidence 999999999999999999999999 99999999876444333211 1110 0001 11112 2223
Q ss_pred HHHhhCCceecHHHHHHcCCceeeccC
Q 024122 244 QQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 244 ~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
.+++=.+..|+++||+++||||+|.+.
T Consensus 173 ~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 173 MELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 333334678999999999999999863
No 62
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=2.5e-07 Score=84.16 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=92.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH-------------------HHHHHHHHhhCCCeEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV-------------------LAIYDCMSWIKPKVGTV 169 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a~-------------------~~I~d~I~~~~~pV~tv 169 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++..- ..+++.|..+++||++.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 788888999999998887665565555321 234554310 12455677788999999
Q ss_pred EccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Q 024122 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 249 (272)
Q Consensus 170 v~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~ 249 (272)
+.|.|..+|.-++++||. |++.++++|.+-....|.. -+..- . ..+.+..| .....+++-.
T Consensus 107 v~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~vG--~~~a~~l~l~ 167 (260)
T PRK05980 107 VNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGMP---PTFGG----T--------QRLPRLAG--RKRALELLLT 167 (260)
T ss_pred EcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCCC---CCchH----h--------hHHHhhcC--HHHHHHHHHc
Confidence 999999999999999999 9999999987644333321 01000 0 00111112 2233344444
Q ss_pred CceecHHHHHHcCCceeeccC
Q 024122 250 DRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 250 d~~lsa~EAle~GLID~I~~~ 270 (272)
+..++++||+++||||+|.+.
T Consensus 168 g~~~~a~eA~~~Glv~~vv~~ 188 (260)
T PRK05980 168 GDAFSAERALEIGLVNAVVPH 188 (260)
T ss_pred CCccCHHHHHHcCCCCcccCH
Confidence 678999999999999999864
No 63
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=4.7e-07 Score=82.37 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=90.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH---------------HHHHHHHHHhhCCCeEEEEcccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a---------------~~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++.++.+.+.+.|..++ +..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67888888888888876 33555554322 33455532 12345667788899999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
..+|.-++++||. |++.++++|.+-....|.. -+..-. .. +.+..| .....+++=.+..|+
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~~~iG--~~~a~~l~ltg~~~~ 164 (255)
T PRK08150 104 VGGGLELASAAHI--RVADESTYFALPEGQRGIF---VGGGGS----VR--------VPRLIG--VARMTDMMLTGRVYD 164 (255)
T ss_pred EcHHHHHHHhCCE--EEEeCCCEEeccccccCCC---CCccHH----HH--------HHHHhC--HHHHHHHHHcCCcCC
Confidence 9999999999999 9999999987644333321 111000 00 111122 222333333467899
Q ss_pred HHHHHHcCCceeeccCC
Q 024122 255 AAEAMEFGLIDGILETE 271 (272)
Q Consensus 255 a~EAle~GLID~I~~~~ 271 (272)
++||+++||||+|.+.+
T Consensus 165 a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 165 AQEGERLGLAQYLVPAG 181 (255)
T ss_pred HHHHHHcCCccEeeCch
Confidence 99999999999998753
No 64
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.73 E-value=2.5e-07 Score=84.24 Aligned_cols=137 Identities=19% Similarity=0.203 Sum_probs=91.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-----NSPGGsV~a----------------~~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|
T Consensus 27 l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (259)
T TIGR01929 27 FRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNG 106 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 67888888989888887665555444421 133455421 123456778888999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCC-cCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG-GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~-G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
.|..+|.-++++||. |++.++++|.+-....|.. +-. -.. . +.+..| .....+++-.+.
T Consensus 107 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~~-~~~-------~--------l~~~vG--~~~a~~l~l~g~ 166 (259)
T TIGR01929 107 YAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSFDGGY-GSS-------Y--------LARIVG--QKKAREIWFLCR 166 (259)
T ss_pred EEehHHHHHHHhCCE--EEecCCCEecCcccccccCCCcc-HHH-------H--------HHHHhH--HHHHHHHHHhCC
Confidence 999999999999999 9999999998765554421 100 000 0 111112 122233443466
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||+|++.
T Consensus 167 ~~~a~eA~~~Glv~~vv~~ 185 (259)
T TIGR01929 167 QYDAEQALDMGLVNTVVPL 185 (259)
T ss_pred ccCHHHHHHcCCcccccCH
Confidence 8999999999999999864
No 65
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=2.5e-07 Score=84.43 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=90.0
Q ss_pred eCh-hHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH----------------------HHHHHHHHhhCCCe
Q 024122 114 INS-MVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV----------------------LAIYDCMSWIKPKV 166 (272)
Q Consensus 114 Id~-~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~----------------------~~I~d~I~~~~~pV 166 (272)
++. ++.+.+.+.+..++.++..+.|+|.=+ |.|+++... ..+++.|..+++||
T Consensus 27 l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpv 106 (266)
T PRK09245 27 LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPV 106 (266)
T ss_pred CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCE
Confidence 554 677888888888887665555554321 445554321 12445677788999
Q ss_pred EEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 024122 167 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQY 246 (272)
Q Consensus 167 ~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~ 246 (272)
++.+.|.|..+|.-++++||. |++.++++|.+.....|..- +..-. . .+.+..| .....++
T Consensus 107 Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p---~~g~~----~--------~l~~~vG--~~~a~~l 167 (266)
T PRK09245 107 IAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLIP---GDGGA----W--------LLPRIIG--MARAAEM 167 (266)
T ss_pred EEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcCC---Ccchh----h--------hHHHHhh--HHHHHHH
Confidence 999999999999999999999 99999999876544433210 10000 0 0111111 1222333
Q ss_pred hhCCceecHHHHHHcCCceeeccC
Q 024122 247 TERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 247 ~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+-.+..|+++||+++||||+|.+.
T Consensus 168 ~l~g~~~~a~eA~~~Glv~~vv~~ 191 (266)
T PRK09245 168 AFTGDAIDAATALEWGLVSRVVPA 191 (266)
T ss_pred HHcCCCcCHHHHHHcCCcceecCH
Confidence 334678999999999999999864
No 66
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.72 E-value=3.8e-07 Score=83.51 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=90.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-----------------HHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~-----------------~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.+.|
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 78888899999999888766555555421 1344554311 12344566778999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
.|..+|.-++++||. |++.++++|.+-....|.....--... +.+..|. ....+++-.+..
T Consensus 116 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~---------------l~~~vG~--~~a~~l~ltg~~ 176 (268)
T PRK07327 116 PAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVAAGDHAAIV---------------WPLLCGM--AKAKYYLLLCEP 176 (268)
T ss_pred eeeehhhHHHHhCCE--EEecCCCEEeCcccccCCCCCcchhhH---------------HHHHhCH--HHHHHHHHcCCc
Confidence 999999999999999 999999998753333332210000000 1111121 222334434678
Q ss_pred ecHHHHHHcCCceeeccC
Q 024122 253 LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~ 270 (272)
|+|+||+++||||+|.+.
T Consensus 177 ~~a~eA~~~Glv~~vv~~ 194 (268)
T PRK07327 177 VSGEEAERIGLVSLAVDD 194 (268)
T ss_pred cCHHHHHHcCCcceecCH
Confidence 999999999999999864
No 67
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.72 E-value=3.6e-07 Score=83.95 Aligned_cols=138 Identities=20% Similarity=0.180 Sum_probs=93.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-----NSPGGsV~a----------------~~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 116 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAG 116 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECC
Confidence 78888899999999888776556555532 134555431 012455677888999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
.|..+|.-++++||. |++.++++|.+-.+..|.. -...- ... +.+..| .....+++-.+..
T Consensus 117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~~~----~~~--------l~~~vG--~~~a~~l~ltg~~ 177 (273)
T PRK07396 117 YAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSF---DGGYG----ASY--------LARIVG--QKKAREIWFLCRQ 177 (273)
T ss_pred EEehHHHHHHHhCCE--EEeeCCcEEeccccccccc---CCchH----HHH--------HHHHhh--HHHHHHHHHhCCC
Confidence 999999999999999 9999999987755443321 00000 000 111112 2223344434678
Q ss_pred ecHHHHHHcCCceeeccC
Q 024122 253 LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~ 270 (272)
|+++||+++||||+|++.
T Consensus 178 ~~A~eA~~~GLv~~vv~~ 195 (273)
T PRK07396 178 YDAQEALDMGLVNTVVPL 195 (273)
T ss_pred cCHHHHHHcCCcCeecCH
Confidence 999999999999999864
No 68
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=3.4e-07 Score=83.24 Aligned_cols=137 Identities=19% Similarity=0.235 Sum_probs=92.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHHH----------------------HHHHHHHHhhCCCeE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSV----------------------LAIYDCMSWIKPKVG 167 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~----INSPGGsV~a~----------------------~~I~d~I~~~~~pV~ 167 (272)
++.++.+.+.+.|..++.++..+.|+|. .=|.|+++... ..++..|+.+++||+
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvI 106 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVI 106 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEE
Confidence 7888999999999998876655554442 11445554321 113344567889999
Q ss_pred EEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 024122 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 247 (272)
Q Consensus 168 tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~ 247 (272)
+.+.|.|..+|.-++++||. |++.++++|.+.....|..- +..- ... +.+..| .....+++
T Consensus 107 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~--------l~~~~g--~~~a~~l~ 167 (262)
T PRK07509 107 AALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLVP---DMAG----TVS--------LRGLVR--KDVARELT 167 (262)
T ss_pred EEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCCC---CchH----HHH--------HHHHhC--HHHHHHHH
Confidence 99999999999999999999 99999999877654443211 1100 000 111112 23334444
Q ss_pred hCCceecHHHHHHcCCceeecc
Q 024122 248 ERDRFLSAAEAMEFGLIDGILE 269 (272)
Q Consensus 248 ~~d~~lsa~EAle~GLID~I~~ 269 (272)
-.+..++++||+++||||+|.+
T Consensus 168 ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 168 YTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred HcCCCcCHHHHHHcCChhhhhc
Confidence 4467899999999999999975
No 69
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.71 E-value=4.9e-07 Score=82.16 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=93.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------HHHHHHHHhhCCCeEEEEccccchH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVAASQ 177 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------~~I~d~I~~~~~pV~tvv~G~AASa 177 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..++..|..+++||++.+.|.|..+
T Consensus 24 l~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (251)
T TIGR03189 24 VDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGG 103 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeH
Confidence 788889999999999887765555444311 345554321 2345567788899999999999999
Q ss_pred HHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHH
Q 024122 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 257 (272)
Q Consensus 178 a~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~E 257 (272)
|.-++++||. |++.++++|.+-....|... .... ..+.+..| .....+++=.+..++++|
T Consensus 104 G~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~~~-------------~~l~~~vg--~~~a~~l~ltg~~~~a~e 163 (251)
T TIGR03189 104 GLEVAAAGNL--MFAAPDAKLGQPEIVLGVFA---PAAS-------------CLLPERMG--RVAAEDLLYSGRSIDGAE 163 (251)
T ss_pred HHHHHHhCCE--EEEcCCCEEeCchhhcCCCC---CchH-------------HHHHHHhC--HHHHHHHHHcCCCCCHHH
Confidence 9999999999 99999999876444333211 1100 01112222 233444444466799999
Q ss_pred HHHcCCceeeccC
Q 024122 258 AMEFGLIDGILET 270 (272)
Q Consensus 258 Ale~GLID~I~~~ 270 (272)
|+++||||+|.+.
T Consensus 164 A~~~Glv~~v~~~ 176 (251)
T TIGR03189 164 GARIGLANAVAED 176 (251)
T ss_pred HHHCCCcceecCc
Confidence 9999999999864
No 70
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=3e-07 Score=83.34 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=93.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH----------------HHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~----------------~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|-|+++..- ..+++.|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~ 104 (249)
T PRK07938 25 LPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGF 104 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 77888889999998888766555555431 1445665421 124456778889999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|..+|.-++++||. |++.++++|.+-....|..|... .+.+..| .....+++=.+..+
T Consensus 105 a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~~------------------~l~~~vg--~~~a~~l~ltg~~~ 162 (249)
T PRK07938 105 CLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAAT------------------HLQRLVP--QHLMRALFFTAATI 162 (249)
T ss_pred EeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhHH------------------HHHHhcC--HHHHHHHHHhCCcC
Confidence 99999999999999 99999999876443333322110 0111122 23334444446789
Q ss_pred cHHHHHHcCCceeeccC
Q 024122 254 SAAEAMEFGLIDGILET 270 (272)
Q Consensus 254 sa~EAle~GLID~I~~~ 270 (272)
+++||+++||||+|.+.
T Consensus 163 ~a~eA~~~Glv~~vv~~ 179 (249)
T PRK07938 163 TAAELHHFGSVEEVVPR 179 (249)
T ss_pred CHHHHHHCCCccEEeCH
Confidence 99999999999999874
No 71
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.71 E-value=4.6e-07 Score=82.25 Aligned_cols=137 Identities=16% Similarity=0.137 Sum_probs=90.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------------HHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------------~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.|..++.++ .+.|+|.=+ |.|+++... ..+++.|..+++||++.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 101 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN 101 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 78888899999999988765 665555311 334444310 1234567788899999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.+++.|.+-....|.. -+..-. .. +.+..| .....+++-.+.
T Consensus 102 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG~~---p~~g~~----~~--------l~~~vG--~~~a~~l~l~g~ 162 (256)
T TIGR02280 102 GVAAGAGANLALACDI--VLAAESARFIQAFAKIGLI---PDSGGT----WS--------LPRLVG--RARAMGLAMLGE 162 (256)
T ss_pred CeeehHHHHHHHhCCE--EEecCCCEEeChhhhcCCC---CCccHH----HH--------HHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999987543333211 110000 00 111112 122233433467
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||+|.+.
T Consensus 163 ~~~a~eA~~~Glv~~vv~~ 181 (256)
T TIGR02280 163 KLDARTAASWGLIWQVVDD 181 (256)
T ss_pred CCCHHHHHHcCCcceeeCh
Confidence 8999999999999999864
No 72
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=3.5e-07 Score=84.04 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=92.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH----------------------HHHHHHHHhhCCCeE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV----------------------LAIYDCMSWIKPKVG 167 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~----------------------~~I~d~I~~~~~pV~ 167 (272)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++... ..+++.|..+++||+
T Consensus 34 l~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 113 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVI 113 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 78888888999999888766555555431 1445655421 134456677889999
Q ss_pred EEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 024122 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 247 (272)
Q Consensus 168 tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~ 247 (272)
+.+.|.|..+|.-++++||. |++.++++|.+-....|..- .+.... ..+.+..| .....+++
T Consensus 114 aav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~~------------~~l~~~vG--~~~A~~l~ 175 (276)
T PRK05864 114 AAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTA--SELGLS------------YLLPRAIG--SSRAFEIM 175 (276)
T ss_pred EEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCC--CCcchh------------eehHhhhC--HHHHHHHH
Confidence 99999999999999999999 99999998875443333210 011000 00111223 23333333
Q ss_pred hCCceecHHHHHHcCCceeeccCC
Q 024122 248 ERDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 248 ~~d~~lsa~EAle~GLID~I~~~~ 271 (272)
-.+..++++||+++||||+|.+.+
T Consensus 176 l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 176 LTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred HcCCccCHHHHHHcCCcceeeCHH
Confidence 335678999999999999998653
No 73
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=5.7e-07 Score=81.86 Aligned_cols=138 Identities=13% Similarity=0.099 Sum_probs=91.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHHH----------HH--HHHHHhhCCCeEEEEccccch
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSVL----------AI--YDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a~~----------~I--~d~I~~~~~pV~tvv~G~AAS 176 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.... .+ +..+..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 778888999999998887765565555321 3356654211 11 122345678999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 256 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~ 256 (272)
+|.-++++||. |++.++++|.+.....|.. -+..- .. .+.+..| .....+++-.+..++++
T Consensus 108 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~~--------~l~~~vg--~~~a~~lll~g~~~~a~ 168 (259)
T PRK06494 108 GGFELALACDL--IVAAENATFALPEPRVGLA---ALAGG----LH--------RLPRQIG--LKRAMGMILTGRRVTAR 168 (259)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCcccccCCC---CCchH----HH--------HHHHHcC--HHHHHHHHHcCCcCCHH
Confidence 99999999999 9999999997755544422 01100 00 0112222 23333444456789999
Q ss_pred HHHHcCCceeeccC
Q 024122 257 EAMEFGLIDGILET 270 (272)
Q Consensus 257 EAle~GLID~I~~~ 270 (272)
||+++||||+|++.
T Consensus 169 eA~~~GLv~~vv~~ 182 (259)
T PRK06494 169 EGLELGFVNEVVPA 182 (259)
T ss_pred HHHHcCCCcEecCH
Confidence 99999999999864
No 74
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.70 E-value=6.6e-07 Score=81.88 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=93.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH----------------HHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~----------------~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||++.+.|.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (266)
T PRK08139 35 LSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGI 114 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECce
Confidence 688888999999988887655554444211 234444310 124556778889999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|..+|.-++++||. |++.++++|.+-....|...... . . . +.+..| .....+++-.+..+
T Consensus 115 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~-~--~--~-----------l~r~vG--~~~A~~l~ltg~~~ 174 (266)
T PRK08139 115 ATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTP-M--V--A-----------LSRNVP--RKQAMEMLLTGEFI 174 (266)
T ss_pred eeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCcc-H--H--H-----------HHHHhC--HHHHHHHHHcCCcc
Confidence 99999999999999 99999999876555444321110 0 0 0 111122 23334444446789
Q ss_pred cHHHHHHcCCceeeccCC
Q 024122 254 SAAEAMEFGLIDGILETE 271 (272)
Q Consensus 254 sa~EAle~GLID~I~~~~ 271 (272)
+++||+++||||+|.+.+
T Consensus 175 ~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 175 DAATAREWGLVNRVVPAD 192 (266)
T ss_pred CHHHHHHcCCccEeeChh
Confidence 999999999999998753
No 75
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=4.6e-07 Score=82.23 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=90.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCC------CCcHHH-------------------HHHHHHHHHhhCCCeEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYS-------------------VLAIYDCMSWIKPKVGT 168 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSP------GGsV~a-------------------~~~I~d~I~~~~~pV~t 168 (272)
++.++.+.+.+.|..++.++..+.|+| .+. |+++.. ...++..|..+++||++
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVRFLLI--NANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 788888899999988887665554443 333 344431 12344567778999999
Q ss_pred EEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Q 024122 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTE 248 (272)
Q Consensus 169 vv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~ 248 (272)
.+.|.|..+|.-++++||. |++.++++|..-....|.. -+..-. . .+.+..| .....+++-
T Consensus 104 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vg--~~~a~~l~l 164 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGLA---PDAGGL----F--------LLTRAIG--LNRATHLAM 164 (255)
T ss_pred EecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCCC---CCCchh----h--------hhHHhhC--HHHHHHHHH
Confidence 9999999999999999999 9999999987532222211 010000 0 0111112 222344444
Q ss_pred CCceecHHHHHHcCCceeeccCC
Q 024122 249 RDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 249 ~d~~lsa~EAle~GLID~I~~~~ 271 (272)
.+..++|+||+++||||+|.+.+
T Consensus 165 ~g~~~sa~eA~~~Glv~~vv~~~ 187 (255)
T PRK07260 165 TGEALTAEKALEYGFVYRVAESE 187 (255)
T ss_pred hCCccCHHHHHHcCCcceecCHh
Confidence 46789999999999999998653
No 76
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=4.7e-07 Score=81.79 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=90.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHH----------HHHHHHHHHhhCCCeEEEEccccchHHH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS----------VLAIYDCMSWIKPKVGTVCFGVAASQAA 179 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~----INSPGGsV~a----------~~~I~d~I~~~~~pV~tvv~G~AASaa~ 179 (272)
++.++.+.+.+.+..++. +..+.|+|. .=|.|+++.. ...++..|..+++||++.+.|.|..+|.
T Consensus 24 l~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~ 102 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGL 102 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccHH
Confidence 788888999999988774 344444442 1134455431 1345667778899999999999999999
Q ss_pred HHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHH
Q 024122 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 259 (272)
Q Consensus 180 lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAl 259 (272)
-++++||. |++.++++|.+-....|.. -+.. .. ..+.+..| .....+++=.+..|+++||+
T Consensus 103 ~lal~cD~--~ia~~~a~f~~pe~~~G~~---p~~g----~~--------~~l~~~~G--~~~a~~l~ltg~~~~a~eA~ 163 (243)
T PRK07854 103 QLAMACDL--RVVAPEAYFQFPVAKYGIA---LDNW----TI--------RRLSSLVG--GGRARAMLLGAEKLTAEQAL 163 (243)
T ss_pred HHHHhCCE--EEEcCCCEEeccccccccC---CCcc----HH--------HHHHHHhC--HHHHHHHHHcCCCcCHHHHH
Confidence 99999999 9999999987533332221 1100 00 01122222 22333444446789999999
Q ss_pred HcCCceeecc
Q 024122 260 EFGLIDGILE 269 (272)
Q Consensus 260 e~GLID~I~~ 269 (272)
++||||+|.+
T Consensus 164 ~~Glv~~v~~ 173 (243)
T PRK07854 164 ATGMANRIGT 173 (243)
T ss_pred HCCCcccccC
Confidence 9999999854
No 77
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=5.3e-07 Score=82.56 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=91.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH--------------------------HHHHHHHHhhC
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV--------------------------LAIYDCMSWIK 163 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~--------------------------~~I~d~I~~~~ 163 (272)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++..- ..+++.|..++
T Consensus 30 l~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCR 109 (272)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCC
Confidence 888889999999998887655554444321 234554321 23445577788
Q ss_pred CCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 024122 164 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV 243 (272)
Q Consensus 164 ~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I 243 (272)
+||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. -+..- . ..+.+..| ....
T Consensus 110 kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~~G--~~~a 170 (272)
T PRK06142 110 KPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMV---ADVGS----L--------QRLPRIIG--DGHL 170 (272)
T ss_pred CCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCC---CCchH----H--------HHHHHHhC--HHHH
Confidence 999999999999999999999999 9999999886655443321 01100 0 00111122 1223
Q ss_pred HHHhhCCceecHHHHHHcCCceeeccC
Q 024122 244 QQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 244 ~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
.+++-.+..++++||+++||||+|+++
T Consensus 171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 171 RELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred HHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 344434577999999999999999874
No 78
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=4.4e-07 Score=82.79 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=91.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a----------------~~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+...|..+++||++.+.|
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 111 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG 111 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 678888999999998887665555554311 33555432 112445567788999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCC-CCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQ-SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~-~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
.|..+|.-++++||. |++.++++|.+-... .|. .-+..- .. .+.+..| .....+++-.+.
T Consensus 112 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~~G~---~p~~g~----~~--------~l~~~vG--~~~a~~l~l~g~ 172 (262)
T PRK06144 112 ACVGGGAAIAAACDL--RIATPSARFGFPIARTLGN---CLSMSN----LA--------RLVALLG--AARVKDMLFTAR 172 (262)
T ss_pred eeeehHHHHHHhCCE--EEecCCCEeechhHHhccC---CCCccH----HH--------HHHHHhC--HHHHHHHHHcCC
Confidence 999999999999999 999999998653321 221 111100 00 1112222 233344444567
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||+|++.
T Consensus 173 ~~~a~eA~~~Glv~~vv~~ 191 (262)
T PRK06144 173 LLEAEEALAAGLVNEVVED 191 (262)
T ss_pred CcCHHHHHHcCCcCeecCH
Confidence 8999999999999999875
No 79
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=4.3e-07 Score=82.83 Aligned_cols=137 Identities=14% Similarity=0.130 Sum_probs=92.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------------HHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------------~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++..- ..+++.|..+++||++.+.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 108 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 778888889888888876655555554322 334554320 1256678888999999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.++++|.+-....|..- +..-. . +..+. ......+++-.+.
T Consensus 109 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p---~~g~~--~-----------~~~~v--G~~~a~~lll~g~ 168 (262)
T PRK07468 109 GQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLIP---ATISP--Y-----------VVARM--GEANARRVFMSAR 168 (262)
T ss_pred CEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCCc---ccchh--h-----------HHhhc--cHHHHHHHHHhCC
Confidence 9999999999999999 99999998876444333210 10000 0 00111 2233344444467
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
-++++||+++||||+|.+.
T Consensus 169 ~~~a~eA~~~Glv~~v~~~ 187 (262)
T PRK07468 169 LFDAEEAVRLGLLSRVVPA 187 (262)
T ss_pred ccCHHHHHHcCCcceecCH
Confidence 8999999999999999864
No 80
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=8.2e-07 Score=81.33 Aligned_cols=138 Identities=16% Similarity=0.120 Sum_probs=93.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH-----------------HHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a~-----------------~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..+++||++.+.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~ 114 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIR 114 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 788888999999998887765555444321 224554320 1244567788899999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.++++|.+.....|..-..--.. . +.+..| .....+++-.+.
T Consensus 115 G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~-------~--------l~~~vG--~~~a~~l~ltg~ 175 (269)
T PRK06127 115 GYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYDGVK-------N--------LVDLVG--PSAAKDLFYTAR 175 (269)
T ss_pred CEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCccHHH-------H--------HHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 99999999987655444321000000 0 111112 233344444467
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||+|++.
T Consensus 176 ~~~a~eA~~~Glv~~vv~~ 194 (269)
T PRK06127 176 RFDAAEALRIGLVHRVTAA 194 (269)
T ss_pred CCCHHHHHHcCCCCEeeCH
Confidence 8999999999999999864
No 81
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.66 E-value=3.6e-07 Score=84.29 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=95.0
Q ss_pred eeChhHHHHHHHHHHHHhccCCCCCEEEEE------eCCCCcHHHH-----------------HHHHHHHHhhCCCeEEE
Q 024122 113 PINSMVAQRAISQLVTLATIDEDADILMYL------NCPGGSIYSV-----------------LAIYDCMSWIKPKVGTV 169 (272)
Q Consensus 113 ~Id~~~a~~ii~~L~~l~~~d~~~~I~L~I------NSPGGsV~a~-----------------~~I~d~I~~~~~pV~tv 169 (272)
.++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..++.||++.
T Consensus 34 al~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 113 (278)
T PLN03214 34 SMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCA 113 (278)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 378888899999999988776566555532 1445554321 11345677778999999
Q ss_pred EccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Q 024122 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 249 (272)
Q Consensus 170 v~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~ 249 (272)
+.|.|..+|.-++++||. |++.++++|.+-....|.. .-+... ...+.+..| .....+++-.
T Consensus 114 V~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~--~p~~~~------------~~~l~~~~G--~~~a~~lllt 175 (278)
T PLN03214 114 IRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP--VPKFWA------------RLFMGRVID--RKVAESLLLR 175 (278)
T ss_pred EcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC--CCChhH------------HHHHHHhcC--HHHHHHHHHc
Confidence 999999999999999999 9999999987644333321 011100 011222233 3344455545
Q ss_pred CceecHHHHHHcCCceeeccC
Q 024122 250 DRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 250 d~~lsa~EAle~GLID~I~~~ 270 (272)
+.-|+++||+++||||+|++.
T Consensus 176 g~~~~a~eA~~~Glv~~vv~~ 196 (278)
T PLN03214 176 GRLVRPAEAKQLGLIDEVVPA 196 (278)
T ss_pred CCccCHHHHHHcCCCcEecCh
Confidence 678999999999999999864
No 82
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=3.7e-07 Score=84.60 Aligned_cols=136 Identities=14% Similarity=0.034 Sum_probs=91.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH-------------------------------------H
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS-------------------------------------V 152 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a-------------------------------------~ 152 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. -
T Consensus 28 l~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (288)
T PRK08290 28 QNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVY 107 (288)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 677888889898888877655555544211 23344321 0
Q ss_pred HHHHHHHHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHH
Q 024122 153 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMY 232 (272)
Q Consensus 153 ~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~y 232 (272)
..++..|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|..| .... .+.
T Consensus 108 ~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~----~~~~-----~l~------- 169 (288)
T PRK08290 108 LGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPG----VEYF-----AHP------- 169 (288)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCc----chHH-----HHH-------
Confidence 12344577888999999999999999999999999 99999999876444444322 1100 000
Q ss_pred HHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 233 AAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 233 a~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+..| .....+++=.+..++|+||+++||||++++.
T Consensus 170 -~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 204 (288)
T PRK08290 170 -WELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPR 204 (288)
T ss_pred -HHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence 1112 2233344444678999999999999999864
No 83
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=6.1e-07 Score=81.51 Aligned_cols=138 Identities=15% Similarity=0.141 Sum_probs=91.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH-------------HHHHHHHHHhhCCCeEEEEccccch
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a-------------~~~I~d~I~~~~~pV~tvv~G~AAS 176 (272)
++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++.. ...++..|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~G 107 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALG 107 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeH
Confidence 678888899999988887665555554311 23455432 1234556778889999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 256 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~ 256 (272)
+|.-++++||. |++.++++|.+-....|.. -+..-. . .+.+..| .....+++-.+..++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vG--~~~a~~l~l~g~~~~a~ 168 (257)
T PRK05862 108 GGCELAMMCDI--IIAADTAKFGQPEIKLGVL---PGMGGS----Q--------RLTRAVG--KAKAMDLCLTGRMMDAA 168 (257)
T ss_pred HHHHHHHHCCE--EEEeCCCEEeCchhccCcC---CCccHH----H--------HHHHHhC--HHHHHHHHHhCCccCHH
Confidence 99999999999 9999999887644333321 111000 0 1111222 12233334346789999
Q ss_pred HHHHcCCceeeccC
Q 024122 257 EAMEFGLIDGILET 270 (272)
Q Consensus 257 EAle~GLID~I~~~ 270 (272)
||+++||||+|.+.
T Consensus 169 eA~~~Glv~~vv~~ 182 (257)
T PRK05862 169 EAERAGLVSRVVPA 182 (257)
T ss_pred HHHHcCCCCEeeCH
Confidence 99999999999864
No 84
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=7.2e-07 Score=81.19 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=92.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH------------------HHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~------------------~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++..- ..++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 107 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVH 107 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 78888889999998888765555444421 1334554310 2345567778899999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.++++|.+-....|... +.... .+.+..| .....+++-.+.
T Consensus 108 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~~-------------~l~~~vg--~~~a~~l~l~g~ 167 (262)
T PRK05995 108 GDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLIP---ATISP-------------YVIRAMG--ERAARRYFLTAE 167 (262)
T ss_pred CEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccCc---cchHH-------------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 99999999877554443321 11000 0111122 233344444467
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||+|.+.
T Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (262)
T PRK05995 168 RFDAAEALRLGLVHEVVPA 186 (262)
T ss_pred ccCHHHHHHcCCCCeecCH
Confidence 7999999999999999864
No 85
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.64 E-value=9.2e-07 Score=80.48 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=91.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------CcHHH---------------HHHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLNCPG-------GSIYS---------------VLAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPG-------GsV~a---------------~~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++...+.+.+..++.++..+.|+| .+.| +++.. ...+++.|..+++||++.+.
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 788888999999998887665554443 3433 44322 12355667788899999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.++++|.+-....|..- +..-. ..+. +..| .....+++-.+.
T Consensus 106 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p---~~g~~----~~l~--------~~vG--~~~a~~l~l~g~ 166 (260)
T PRK07657 106 GIALGGGLELALACDF--RIAAESASLGLTETTLAIIP---GAGGT----QRLP--------RLIG--VGRAKELIYTGR 166 (260)
T ss_pred CEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcCC---CccHH----HHHH--------HHhC--HHHHHHHHHhCC
Confidence 9999999999999999 99999999876554443211 10000 0011 1112 122233333456
Q ss_pred eecHHHHHHcCCceeeccCC
Q 024122 252 FLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~~ 271 (272)
.++++||+++||||+|.+.+
T Consensus 167 ~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK07657 167 RISAQEAKEIGLVEFVVPAH 186 (260)
T ss_pred CCCHHHHHHcCCCCeecCHH
Confidence 79999999999999998753
No 86
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.64 E-value=8.6e-07 Score=80.46 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=89.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH---------------HH-HHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV---------------LA-IYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~---------------~~-I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|-|+++... .. +...|+.+++||++.+.|.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK06563 23 FDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGY 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCe
Confidence 77888889999998887765444433321 0334554321 11 1224667789999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|..+|..++++||. |++.++++|.+.....|..- +..-. .. +.+..| .....+++-.+..|
T Consensus 103 a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p---~~g~~----~~--------l~~~vG--~~~a~~l~ltg~~~ 163 (255)
T PRK06563 103 CLTLGIELMLAADI--VVAADNTRFAQLEVQRGILP---FGGAT----LR--------FPQAAG--WGNAMRYLLTGDEF 163 (255)
T ss_pred eecHHHHHHHhCCE--EEecCCCEEeChhhhcCCCC---CccHH----HH--------HHHHhh--HHHHHHHHHcCCCc
Confidence 99999999999999 99999999877554444210 00000 00 111112 12223444346789
Q ss_pred cHHHHHHcCCceeeccCC
Q 024122 254 SAAEAMEFGLIDGILETE 271 (272)
Q Consensus 254 sa~EAle~GLID~I~~~~ 271 (272)
+++||+++||||+|.+.+
T Consensus 164 ~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 164 DAQEALRLGLVQEVVPPG 181 (255)
T ss_pred CHHHHHHcCCCcEeeCHH
Confidence 999999999999998653
No 87
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.64 E-value=8.2e-07 Score=80.84 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=90.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-------------------HHHHHHHHhhCCCeEEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-------------------LAIYDCMSWIKPKVGTVC 170 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~-------------------~~I~d~I~~~~~pV~tvv 170 (272)
++.++.+.+.+.+..++ ++..+.|+|.= =|.|+++..- ..++..|..+++||++.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 106 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV 106 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67888889999999888 66555555431 1344554321 124556778889999999
Q ss_pred ccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024122 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 250 (272)
Q Consensus 171 ~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d 250 (272)
.|.|..+|.-++++||. |++.++++|.+-....|. .-+..-. ..+. +..| .....+++-.+
T Consensus 107 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~---~p~~g~~----~~l~--------~~vG--~~~a~~l~l~g 167 (262)
T PRK08140 107 NGVAAGAGANLALACDI--VLAARSASFIQAFVKIGL---VPDSGGT----WFLP--------RLVG--MARALGLALLG 167 (262)
T ss_pred CCeeehhHHHHHHhCCE--EEecCCCEEeccccccCC---CCCccHH----HHHH--------HHhC--HHHHHHHHHcC
Confidence 99999999999999999 999999998753333221 1111000 0011 1112 22233444446
Q ss_pred ceecHHHHHHcCCceeeccC
Q 024122 251 RFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 251 ~~lsa~EAle~GLID~I~~~ 270 (272)
..++++||+++||||+|.+.
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~ 187 (262)
T PRK08140 168 EKLSAEQAEQWGLIWRVVDD 187 (262)
T ss_pred CCcCHHHHHHcCCccEeeCh
Confidence 78999999999999999864
No 88
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.63 E-value=1e-06 Score=81.11 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=91.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-------------------HHHHHHHHhhCCCeEEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-------------------LAIYDCMSWIKPKVGTVC 170 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~-------------------~~I~d~I~~~~~pV~tvv 170 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|-|+++... ..++..|..+++||++.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888889999999888766555555432 1334554321 123456777889999999
Q ss_pred ccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024122 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 250 (272)
Q Consensus 171 ~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d 250 (272)
.|.|..+|.-++++||. |++.++++|.+-....|.. -+..-. ..+.+..| .....+++-.+
T Consensus 112 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~iG--~~~a~~llltg 172 (275)
T PRK09120 112 NGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGIP---PGGGVS------------KAMADTVG--HRDALYYIMTG 172 (275)
T ss_pred cCEEechhHHHHHhCCE--EEEeCCcEecCCccccCCC---CCcchH------------HHHHHHcC--HHHHHHHHhcC
Confidence 99999999999999999 9999999987633333321 010000 00111122 22333433346
Q ss_pred ceecHHHHHHcCCceeeccCC
Q 024122 251 RFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 251 ~~lsa~EAle~GLID~I~~~~ 271 (272)
..|+++||+++||||+|++.+
T Consensus 173 ~~~~A~eA~~~Glv~~vv~~~ 193 (275)
T PRK09120 173 ETFTGRKAAEMGLVNESVPLA 193 (275)
T ss_pred CccCHHHHHHcCCcceecCHH
Confidence 789999999999999998653
No 89
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.63 E-value=7.2e-07 Score=82.93 Aligned_cols=139 Identities=12% Similarity=0.011 Sum_probs=89.4
Q ss_pred eeChhHHHHHHHHHHHHhc-----cCCCCCEEEEEe-----CCCCcHHHH----------------HHHHHHHH------
Q 024122 113 PINSMVAQRAISQLVTLAT-----IDEDADILMYLN-----CPGGSIYSV----------------LAIYDCMS------ 160 (272)
Q Consensus 113 ~Id~~~a~~ii~~L~~l~~-----~d~~~~I~L~IN-----SPGGsV~a~----------------~~I~d~I~------ 160 (272)
.++.++.+.+.+.+..++. ++..+.|+|.=+ |.|+++... ..+++.+.
T Consensus 39 al~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (287)
T PRK08788 39 CFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGF 118 (287)
T ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 3778888899999998876 444444444222 445555421 11233333
Q ss_pred hhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 024122 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPI 240 (272)
Q Consensus 161 ~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~ 240 (272)
.+++||++.+.|.|..+|.-++++||. |++.++++|.+-....|.. -+..- . ..+.+..| .
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lGl~---p~~g~----~--------~~l~~~vG--~ 179 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFNLF---PGMGA----Y--------SFLARRVG--P 179 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhCcC---CCchH----H--------HHHHHHhh--H
Confidence 467899999999999999999999999 9999999886533333321 11100 0 01112222 2
Q ss_pred HHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 241 EKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 241 e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
....+++-.+..|+++||+++||||++.+.
T Consensus 180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~ 209 (287)
T PRK08788 180 KLAEELILSGKLYTAEELHDMGLVDVLVED 209 (287)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 333444445678999999999999999865
No 90
>PRK08321 naphthoate synthase; Validated
Probab=98.62 E-value=1.4e-06 Score=81.22 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=94.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE-----------EeCCCCcHHHH-----------------------H---HHH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMY-----------LNCPGGSIYSV-----------------------L---AIY 156 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~-----------INSPGGsV~a~-----------------------~---~I~ 156 (272)
++.++.+.+.+.|..++.++..+.|+|. .=|.|+++... . .+.
T Consensus 49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (302)
T PRK08321 49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ 128 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 7888899999999998877666666664 33677776420 0 234
Q ss_pred HHHHhhCCCeEEEEccccchHHHHHHhcCccCcEEec-cCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHH
Q 024122 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM-PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAF 235 (272)
Q Consensus 157 d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~-Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~ 235 (272)
+.|..+++||++.+.|.|..+|.-|+++||. |++. ++++|.+-....|.. +.... . ..+.+.
T Consensus 129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~--p~~~~-~------------~~L~r~ 191 (302)
T PRK08321 129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSF--DGGYG-S------------AYLARQ 191 (302)
T ss_pred HHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccC--CCchH-H------------HHHHHH
Confidence 5577788999999999999999999999999 9998 689986543333211 00000 0 001111
Q ss_pred hCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 236 TGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 236 tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
.| .....+++=.+..++|+||+++||||+|.+.
T Consensus 192 vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~ 224 (302)
T PRK08321 192 VG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH 224 (302)
T ss_pred hC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCH
Confidence 22 2223344444678999999999999999874
No 91
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=1.4e-06 Score=77.77 Aligned_cols=134 Identities=14% Similarity=0.146 Sum_probs=87.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeC------CCCcHHH--------------HHHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLNC------PGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~INS------PGGsV~a--------------~~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.+..++ + ..+.|+ +.. .|+++.. ...++..|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~-~~~vvv--l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-D-DRAVVV--ITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-c-cCcEEE--EeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 77888888988888876 2 233333 333 3444321 1234556677889999999999
Q ss_pred cchHHHHHHhcCccCcEEeccC-cEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 174 AASQAAIILAGGEKGMRYAMPN-ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pn-a~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
|..+|.-++++||. |++.++ ++|.+-....|.. +.... . ..+.++.| .....+++-.+..
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~--~~~~~-----~--------~~l~~~~g--~~~a~~lll~g~~ 162 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMT--MPHAA-----I--------ELARDRLT--PSAFQRAVINAEM 162 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCc--CChHH-----H--------HHHHHHcC--HHHHHHHHHcCcc
Confidence 99999999999999 999998 8887644333321 11100 0 00111112 1223334445778
Q ss_pred ecHHHHHHcCCceeeccC
Q 024122 253 LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~ 270 (272)
++|+||+++||||+|.+.
T Consensus 163 ~~a~eA~~~Glv~~vv~~ 180 (229)
T PRK06213 163 FDPEEAVAAGFLDEVVPP 180 (229)
T ss_pred cCHHHHHHCCCceeccCh
Confidence 999999999999999864
No 92
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.61 E-value=1.5e-06 Score=78.83 Aligned_cols=139 Identities=15% Similarity=0.075 Sum_probs=91.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHHHH----------HHHHHH-HhhCCCeEEEEccccchHH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSVL----------AIYDCM-SWIKPKVGTVCFGVAASQA 178 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~----INSPGGsV~a~~----------~I~d~I-~~~~~pV~tvv~G~AASaa 178 (272)
++.++.+.+.+.|..++.++..+.|+|. .=|.|+++.... .+...+ ..+++||++.+.|.|..+|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence 7888899999999998876655555542 124556654310 111111 3467899999999999999
Q ss_pred HHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHH
Q 024122 179 AIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 258 (272)
Q Consensus 179 ~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EA 258 (272)
.-++++||. |++.++++|.+-....|.. -+..- . ..+.+..| .....+++-.+..++++||
T Consensus 107 ~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~vg--~~~a~~l~l~g~~~~a~eA 167 (254)
T PRK08252 107 FELALACDL--IVAARDAKFGLPEVKRGLV---AAGGG----L--------LRLPRRIP--YHIAMELALTGDMLTAERA 167 (254)
T ss_pred HHHHHhCCE--EEEeCCCEEeCchhhcCCC---CCchH----H--------HHHHHHcC--HHHHHHHHHcCCccCHHHH
Confidence 999999999 9999999986543333321 11100 0 01112222 2334444445678999999
Q ss_pred HHcCCceeeccCC
Q 024122 259 MEFGLIDGILETE 271 (272)
Q Consensus 259 le~GLID~I~~~~ 271 (272)
+++||||+|.+.+
T Consensus 168 ~~~Glv~~vv~~~ 180 (254)
T PRK08252 168 HELGLVNRLTEPG 180 (254)
T ss_pred HHcCCcceecCcc
Confidence 9999999998753
No 93
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.60 E-value=1.6e-06 Score=79.01 Aligned_cols=139 Identities=16% Similarity=0.104 Sum_probs=90.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHHH----------------HH--HHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL----------------AI--YDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~~----------------~I--~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.... .+ ...+..+++||++.+.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~ 108 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVE 108 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEEEC
Confidence 788888999999999887765555444211 3345553210 01 1113466889999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.++++|.+.....|.. -+..- .. .+.+..| .....+++-.+.
T Consensus 109 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~~--------~l~r~vG--~~~a~~l~ltg~ 169 (263)
T PRK07799 109 GPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLF---PMGGS----AV--------RLVRQIP--YTVACDLLLTGR 169 (263)
T ss_pred CeEeccHHHHHHhCCE--EEecCCCEecCcccccCcC---CCccH----HH--------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999987644443321 01000 00 0111122 233344444467
Q ss_pred eecHHHHHHcCCceeeccCC
Q 024122 252 FLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~~ 271 (272)
.|+++||+++||||+|.+.+
T Consensus 170 ~~~a~eA~~~Glv~~vv~~~ 189 (263)
T PRK07799 170 HITAAEAKEIGLIGHVVPDG 189 (263)
T ss_pred CCCHHHHHHcCCccEecCcc
Confidence 89999999999999998754
No 94
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=2e-06 Score=77.88 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=88.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH------------HHHHHHHHhhCCCeEEEEccccchH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVAASQ 177 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~------------~~I~d~I~~~~~pV~tvv~G~AASa 177 (272)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++..- ..++..|..+++||++.+.|.|..+
T Consensus 24 l~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (248)
T PRK06072 24 LNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGA 103 (248)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 78888999999999988766555554431 1445665421 1344556778899999999999999
Q ss_pred HHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHH
Q 024122 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 257 (272)
Q Consensus 178 a~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~E 257 (272)
|.-++++||. |++.++++|.+.....|.. -+..-. . .+.+..|. ...+++-.+..++|+|
T Consensus 104 G~~lal~cD~--~ia~~~a~f~~~~~~~Gl~---p~~g~~-----~-------~l~~~~g~---~a~~lll~g~~~~a~e 163 (248)
T PRK06072 104 CIGIALSTDF--KFASRDVKFVTAFQRLGLA---SDTGVA-----Y-------FLLKLTGQ---RFYEILVLGGEFTAEE 163 (248)
T ss_pred HHHHHHhCCE--EEEcCCCEEecchhhcCcC---CCchHH-----H-------HHHHHhhH---HHHHHHHhCCccCHHH
Confidence 9999999999 9999999987654443322 111100 0 01111121 1222222356789999
Q ss_pred HHHcCCceee
Q 024122 258 AMEFGLIDGI 267 (272)
Q Consensus 258 Ale~GLID~I 267 (272)
|+++||||++
T Consensus 164 A~~~Glv~~~ 173 (248)
T PRK06072 164 AERWGLLKIS 173 (248)
T ss_pred HHHCCCcccc
Confidence 9999999964
No 95
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.58 E-value=1.4e-06 Score=79.68 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=91.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------------HHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------------~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++... ..+...|..+++||++.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 777888888888888887665565554221 445554310 1344556778899999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.++++|.+-....|.. -+.... .+.+..|. ....+++=.+.
T Consensus 110 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gi~---p~~~~~-------------~l~~~vG~--~~a~~l~ltg~ 169 (265)
T PRK05674 110 GAAFGGALGLISCCDM--AIGADDAQFCLSEVRIGLA---PAVISP-------------FVVKAIGE--RAARRYALTAE 169 (265)
T ss_pred CEEEechhhHhhhcCE--EEEeCCCEEeCcccccCCC---cchhHH-------------HHHHHhCH--HHHHHHHHhCc
Confidence 9999999999999999 9999999987643333321 111100 01111222 22333333456
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.|+++||+++||||+|.+.
T Consensus 170 ~~~a~eA~~~Glv~~vv~~ 188 (265)
T PRK05674 170 RFDGRRARELGLLAESYPA 188 (265)
T ss_pred ccCHHHHHHCCCcceecCH
Confidence 7999999999999999864
No 96
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.57 E-value=1.5e-06 Score=78.98 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=90.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHHH-----H--------HHHHHHhhCCCeEEEEccccch
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL-----A--------IYDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~~-----~--------I~d~I~~~~~pV~tvv~G~AAS 176 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.... . +...+..+++||++.+.|.|..
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 106 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVA 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEh
Confidence 788888999999999887665555554321 4456654311 0 0112235678999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHH
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 256 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~ 256 (272)
+|.-++++||. |++.++++|.+-....|.. .... ... .+.+..| .....+++-.+..|+++
T Consensus 107 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g----~~~--------~l~~~iG--~~~a~~lll~g~~~~a~ 167 (254)
T PRK08259 107 GGLELALWCDL--RVAEEDAVFGVFCRRWGVP---LIDG----GTV--------RLPRLIG--HSRAMDLILTGRPVDAD 167 (254)
T ss_pred HHHHHHHhCCE--EEecCCCEecCcccccCCC---CCcc----HHH--------HHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999999 9999999886543332221 1100 000 0111223 23334444456789999
Q ss_pred HHHHcCCceeeccCC
Q 024122 257 EAMEFGLIDGILETE 271 (272)
Q Consensus 257 EAle~GLID~I~~~~ 271 (272)
||+++||||+|.+.+
T Consensus 168 eA~~~Glv~~vv~~~ 182 (254)
T PRK08259 168 EALAIGLANRVVPKG 182 (254)
T ss_pred HHHHcCCCCEeeChh
Confidence 999999999998753
No 97
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.54 E-value=2.3e-06 Score=81.80 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=91.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH------------------HHHHHHHHHhhCCCeEEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVC 170 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a------------------~~~I~d~I~~~~~pV~tvv 170 (272)
++.++...+...+..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+
T Consensus 52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV 131 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV 131 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788899999999999887655555444221 23454332 1235566778889999999
Q ss_pred ccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024122 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 250 (272)
Q Consensus 171 ~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d 250 (272)
.|.|..+|.-|+++||. |++.++++|.+-....|.. -+..- ... +.+..|. .....++-.+
T Consensus 132 nG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl~---P~~Gg----t~r--------LprlvG~--~rA~~llltG 192 (360)
T TIGR03200 132 NGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGSA---PIGGA----TDF--------LPLMIGC--EQAMVSGTLC 192 (360)
T ss_pred CCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCC---CCccH----HHH--------HHHhhCH--HHHHHHHHhC
Confidence 99999999999999999 9999999987755443321 11000 000 1111121 2222222235
Q ss_pred ceecHHHHHHcCCceeeccC
Q 024122 251 RFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 251 ~~lsa~EAle~GLID~I~~~ 270 (272)
..|+|+||+++||||++.+.
T Consensus 193 e~~sA~EA~~~GLVd~VVp~ 212 (360)
T TIGR03200 193 EPWSAHKAKRLGIIMDVVPA 212 (360)
T ss_pred CcCcHHHHHHcCChheecCc
Confidence 68999999999999999764
No 98
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=1e-06 Score=82.13 Aligned_cols=134 Identities=13% Similarity=-0.007 Sum_probs=92.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH-------------------H-----------HHHHHHH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS-------------------V-----------LAIYDCM 159 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a-------------------~-----------~~I~d~I 159 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. . ...+..|
T Consensus 29 l~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (298)
T PRK12478 29 IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAI 108 (298)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHH
Confidence 788888899999988887665555554211 33454421 0 0134457
Q ss_pred HhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCC-CCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 024122 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS-GSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQ 238 (272)
Q Consensus 160 ~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~-g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~ 238 (272)
..+++||++.+.|.|..+|.-++++||. |++.++++|.+-.... |... .. . +..+.
T Consensus 109 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~--~~-------~----------~~~~v-- 165 (298)
T PRK12478 109 WRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYL--TG-------M----------WLYRL-- 165 (298)
T ss_pred HhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCc--hh-------H----------HHHHh--
Confidence 7788999999999999999999999999 9999999997755442 3221 00 0 00111
Q ss_pred CHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 239 PIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 239 ~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
......+++--+..|+|+||+++||||+|++.
T Consensus 166 G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~ 197 (298)
T PRK12478 166 SLAKVKWHSLTGRPLTGVQAAEAELINEAVPF 197 (298)
T ss_pred hHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 23444455555788999999999999999864
No 99
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=8.1e-07 Score=80.41 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=89.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH---------------HHHHHHHHhhCCCeEEEEcccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV---------------LAIYDCMSWIKPKVGTVCFGVA 174 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~---------------~~I~d~I~~~~~pV~tvv~G~A 174 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ...+..|..+++||++.+.|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 106 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAA 106 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 77888899999999888765555444421 1344554321 1234456678899999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCC---cCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG---GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~---G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
..+|.-++++||. |++.++++|.+.....|.. |-..- +.+.. ......+++=.+.
T Consensus 107 ~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~------------------l~~~~--G~~~a~~l~ltg~ 164 (249)
T PRK05870 107 VGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATWM------------------LQRAV--GPQVARAALLFGM 164 (249)
T ss_pred EchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcceee------------------HHhhh--CHHHHHHHHHhCC
Confidence 9999999999999 9999999997655443321 11100 11111 2223334443467
Q ss_pred eecHHHHHHcCCceeec
Q 024122 252 FLSAAEAMEFGLIDGIL 268 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~ 268 (272)
.++++||+++||||+|.
T Consensus 165 ~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 165 RFDAEAAVRHGLALMVA 181 (249)
T ss_pred ccCHHHHHHcCCHHHHH
Confidence 89999999999999986
No 100
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=2.5e-06 Score=79.45 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=91.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH-------------------------------------
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------------------------------- 152 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------------------------------- 152 (272)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++...
T Consensus 34 l~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (302)
T PRK08272 34 ITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMM 113 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHH
Confidence 788888999999988887665554444221 344554321
Q ss_pred ---HHHHHHHHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHH
Q 024122 153 ---LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKID 229 (272)
Q Consensus 153 ---~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~ 229 (272)
..++..|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-.... .|-+.. . .
T Consensus 114 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~~--gg~~~~------~--~------ 175 (302)
T PRK08272 114 SRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTRV--WGVPAT------G--M------ 175 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchhc--ccCChH------H--H------
Confidence 12455667888999999999999999999999999 9999999886533321 121110 0 0
Q ss_pred HHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 230 RMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 230 ~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+....| .....+++=-+..++++||+++||||++++.
T Consensus 176 --~~~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~ 212 (302)
T PRK08272 176 --WAYRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP 212 (302)
T ss_pred --HHHHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence 111222 3334444445678999999999999999864
No 101
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.53 E-value=4.7e-06 Score=75.24 Aligned_cols=138 Identities=15% Similarity=0.144 Sum_probs=89.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH-----------------HHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a~-----------------~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.+..++.++....++|.=. |.|+++... ..++..|..+++||++.+.
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 102 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT 102 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 788888899999988876544333444322 345554321 1244557778899999999
Q ss_pred cccchHHHHHHhcCccCcEEecc-CcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHhhC
Q 024122 172 GVAASQAAIILAGGEKGMRYAMP-NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV-QQYTER 249 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~P-na~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I-~~~~~~ 249 (272)
|.|..+|..++++||. |++.+ .++|.+-....|... .+.. ...+.+..|.. .. .+++-.
T Consensus 103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~~--p~~~-------------~~~l~~~vG~~--~a~~~lllt 163 (239)
T PLN02267 103 GHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLPL--PDYF-------------MALLRAKIGSP--AARRDVLLR 163 (239)
T ss_pred CcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCCC--ChHH-------------HHHHHHHcChH--HHHHHHHHc
Confidence 9999999999999999 99985 567765444333210 1100 01122223322 22 234445
Q ss_pred CceecHHHHHHcCCceeeccC
Q 024122 250 DRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 250 d~~lsa~EAle~GLID~I~~~ 270 (272)
+..|+++||+++||||+|.+.
T Consensus 164 G~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 164 AAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred CCcCCHHHHHHCCCcceecCC
Confidence 678999999999999999863
No 102
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.52 E-value=2.7e-06 Score=77.38 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=89.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-----------------HHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~-----------------~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++. ..+.|+|.= =|.|+++..- ..++..|..+++||++.|.|
T Consensus 28 l~~~~~~~L~~~l~~~~~--~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 105 (255)
T PRK07112 28 INDRLIAECMDVLDRCEH--AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRG 105 (255)
T ss_pred CCHHHHHHHHHHHHHhhc--CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEec
Confidence 678888888888887762 244444321 1445554320 12445566778999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
.|..+|..++++||. |++.++++|.+.....|... ... . ..+.+..| .....+++-.+..
T Consensus 106 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p---~~~-----~--------~~l~~~vg--~~~a~~l~l~g~~ 165 (255)
T PRK07112 106 KVNAGGIGFVAASDI--VIADETAPFSLSELLFGLIP---ACV-----L--------PFLIRRIG--TQKAHYMTLMTQP 165 (255)
T ss_pred EEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccCc---chh-----h--------HHHHHHhC--HHHHHHHHHhCCc
Confidence 999999999999999 99999999977555444321 110 0 00112222 2333344444678
Q ss_pred ecHHHHHHcCCceeeccC
Q 024122 253 LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~ 270 (272)
++++||+++||||+|.+.
T Consensus 166 ~~a~eA~~~Glv~~vv~~ 183 (255)
T PRK07112 166 VTAQQAFSWGLVDAYGAN 183 (255)
T ss_pred ccHHHHHHcCCCceecCc
Confidence 999999999999999864
No 103
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2.1e-06 Score=78.25 Aligned_cols=132 Identities=19% Similarity=0.138 Sum_probs=88.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH----------------HHHHHHHHhhCCCeEEEEccc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~----------------~~I~d~I~~~~~pV~tvv~G~ 173 (272)
++.++.+.+.+.+..+ .++..+.|+|.= =|.|+++... ..++..|..+++||++.+.|.
T Consensus 30 l~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~ 108 (260)
T PRK07659 30 LDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGP 108 (260)
T ss_pred CCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 7788888999989888 344444333311 1334555321 123445667788999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCC---cCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG---GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 250 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~---G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d 250 (272)
|..+|.-++++||. |++.++++|.+.....|.. |-..- +.+.. ......+++-.+
T Consensus 109 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------L~~~v--g~~~a~~l~ltg 166 (260)
T PRK07659 109 AAGLGLSIALTADY--VIADISAKLAMNFIGIGLIPDGGGHFF------------------LQKRV--GENKAKQIIWEG 166 (260)
T ss_pred eecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCCCCchhhh------------------HHHhc--CHHHHHHHHHhC
Confidence 99999999999999 9999999987655443322 11100 11111 233344455456
Q ss_pred ceecHHHHHHcCCceeec
Q 024122 251 RFLSAAEAMEFGLIDGIL 268 (272)
Q Consensus 251 ~~lsa~EAle~GLID~I~ 268 (272)
..|+++||+++||||+|.
T Consensus 167 ~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 167 KKLSATEALDLGLIDEVI 184 (260)
T ss_pred CccCHHHHHHcCChHHHh
Confidence 789999999999999987
No 104
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.44 E-value=1.9e-06 Score=79.22 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=99.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-------------HHHHHHHHhhCCCeEEEEccccch
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-------------LAIYDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~-------------~~I~d~I~~~~~pV~tvv~G~AAS 176 (272)
++..+..++.+++..++.++..+.|+|+= =|-|.++.+. +..++.+..+++||++-+.|.|-.
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Alg 140 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALG 140 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeec
Confidence 78888999999999999988766666542 1234444433 345677777889999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCCCC---CcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGS---GGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~g~---~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
+|.-+++.||. |+|.+++.|+.-++..|. .|-..-+. + .-|+ ....+++-.++.+
T Consensus 141 GG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~rl~--------------r----~vG~--s~Ale~~ltg~~~ 198 (290)
T KOG1680|consen 141 GGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQRLP--------------R----IVGK--SRALEMILTGRRL 198 (290)
T ss_pred cchhhhhhcce--EeccCCCeecccccccCCccCCCchhhHH--------------H----HhCh--HHHHHHHHhcCcc
Confidence 99999999999 999999999988776553 22111111 1 1232 2233444457889
Q ss_pred cHHHHHHcCCceeeccCC
Q 024122 254 SAAEAMEFGLIDGILETE 271 (272)
Q Consensus 254 sa~EAle~GLID~I~~~~ 271 (272)
+++||++.|||++|...+
T Consensus 199 ~AqeA~~~GlVn~Vvp~~ 216 (290)
T KOG1680|consen 199 GAQEAKKIGLVNKVVPSG 216 (290)
T ss_pred cHHHHHhCCceeEeecch
Confidence 999999999999998754
No 105
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.41 E-value=5.4e-06 Score=75.26 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=95.9
Q ss_pred eeChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHHHH----------------HHHHHHHhhCCCeEEEEcc
Q 024122 113 PINSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSVL----------------AIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 113 ~Id~~~a~~ii~~L~~l~~~d~~~~I~L~----INSPGGsV~a~~----------------~I~d~I~~~~~pV~tvv~G 172 (272)
.++.++.+.+.+.|..++.++..+.|+|. .=|-|+++..-. .+...|+.+++||++.+.|
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 107 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG 107 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence 48888999999999999887555544432 123456655411 2567888889999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCC-cCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG-GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~-G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
.|..+|.-++++||. |++.++++|.+.....|.. |.- -. ..+.+..|. ....+++--+.
T Consensus 108 ~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g-~~---------------~~l~r~~G~--~~a~~l~ltg~ 167 (257)
T COG1024 108 YALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDG-GT---------------QRLPRLLGR--GRAKELLLTGE 167 (257)
T ss_pred eEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCc-HH---------------HHHHHhcCH--HHHHHHHHcCC
Confidence 999999999999999 9999999998876654432 110 00 001111221 22222333367
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||++.+.
T Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 168 PISAAEALELGLVDEVVPD 186 (257)
T ss_pred cCCHHHHHHcCCcCeeeCC
Confidence 8999999999999998763
No 106
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.40 E-value=6.7e-06 Score=77.54 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=94.9
Q ss_pred ccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHH---HHhhCCCeEEEEcc
Q 024122 103 FRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDC---MSWIKPKVGTVCFG 172 (272)
Q Consensus 103 ~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~-------a~~~I~d~---I~~~~~pV~tvv~G 172 (272)
.++++-...|-++++..+....-+..+++- .-+|+-.+||||..+. .+..|... +...+.|+++++.|
T Consensus 121 ~~e~~~~~~G~~~peg~rKa~R~m~lA~~f--~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiG 198 (319)
T PRK05724 121 TKEKIRRNFGMPRPEGYRKALRLMKMAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG 198 (319)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 344555567888888888877766655543 4689999999996532 12344444 44666899999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
-|.|+|++.+..+|. .+|.|++.+.+-.|.+.. .+. +++ .. ..++..+ ..-
T Consensus 199 eg~sGGAla~~~aD~--v~m~~~A~~svisPEg~a------------~Il-~~~---------~~-~a~~aae----~~~ 249 (319)
T PRK05724 199 EGGSGGALAIGVGDR--VLMLEYSTYSVISPEGCA------------SIL-WKD---------AS-KAPEAAE----AMK 249 (319)
T ss_pred CccHHHHHHHhccCe--eeeecCceEeecCHHHHH------------HHH-hcC---------ch-hHHHHHH----HcC
Confidence 999999999998998 999999999887775320 010 000 00 1122222 234
Q ss_pred ecHHHHHHcCCceeeccC
Q 024122 253 LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~ 270 (272)
+|+.++++.|+||+|+..
T Consensus 250 ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 250 ITAQDLKELGIIDEIIPE 267 (319)
T ss_pred CCHHHHHHCCCceEeccC
Confidence 799999999999999863
No 107
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.40 E-value=6.9e-06 Score=74.74 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=86.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC------CcHHH------------------HHHHHHHHHhhCCCeEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLNCPG------GSIYS------------------VLAIYDCMSWIKPKVGTV 169 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPG------GsV~a------------------~~~I~d~I~~~~~pV~tv 169 (272)
++.++.+.+.+.+..++.++..+.|+| .+.| +++.. ...+++.|..+++||++.
T Consensus 30 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 677888888888888876654444443 4444 33321 022445566778999999
Q ss_pred EccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Q 024122 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 249 (272)
Q Consensus 170 v~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~ 249 (272)
+.|.|..+|.-++++||. |++.++++|.+-....|.. -+..-. ..+. ++. . ....+++-.
T Consensus 108 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~l~-~l~--~--------~~a~~l~l~ 167 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGVA---PAIISL----TLLP-RLS--P--------RAAARYYLT 167 (260)
T ss_pred EcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCCC---CCcccc----hhHH-hhh--H--------HHHHHHHHh
Confidence 999999999999999999 9999999887644333321 111000 0000 010 0 011222223
Q ss_pred CceecHHHHHHcCCceeecc
Q 024122 250 DRFLSAAEAMEFGLIDGILE 269 (272)
Q Consensus 250 d~~lsa~EAle~GLID~I~~ 269 (272)
+..|+++||+++||||++.+
T Consensus 168 g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 168 GEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred CCccCHHHHHHcCCcccchH
Confidence 56789999999999999864
No 108
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.38 E-value=7e-06 Score=77.40 Aligned_cols=134 Identities=14% Similarity=0.124 Sum_probs=93.0
Q ss_pred CcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhhCCCeEEEEcccc
Q 024122 105 NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGVA 174 (272)
Q Consensus 105 ~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~-------a~~~I~d~I---~~~~~pV~tvv~G~A 174 (272)
+++-...|-.+++..+.....+..+++- .-+|+-.|||||..+. .+..|...+ ...+.|+++++.|-|
T Consensus 126 e~~~~~~G~~~p~g~rKa~Rlm~lA~~f--~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeg 203 (322)
T CHL00198 126 ENVLRNFGMPSPGGYRKALRLMKHANKF--GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEG 203 (322)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence 3333345668888888777766655443 4689999999997642 234555544 455689999999999
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceec
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 254 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ls 254 (272)
+|+|++.+..+|. .+|.+++.+.+-.|.+.. .+. + ++.+...+..+ -.-+|
T Consensus 204 gsGGAlal~~aD~--V~m~e~a~~sVisPEg~a------------~Il-~-------------~d~~~a~~aA~-~~~it 254 (322)
T CHL00198 204 GSGGALGIGIGDS--IMMLEYAVYTVATPEACA------------AIL-W-------------KDSKKSLDAAE-ALKIT 254 (322)
T ss_pred cHHHHHhhhcCCe--EEEeCCeEEEecCHHHHH------------HHH-h-------------cchhhHHHHHH-HcCCC
Confidence 9999999998998 999999999888775310 000 0 01122222222 23489
Q ss_pred HHHHHHcCCceeecc
Q 024122 255 AAEAMEFGLIDGILE 269 (272)
Q Consensus 255 a~EAle~GLID~I~~ 269 (272)
|++-+++|+||+|+.
T Consensus 255 a~dL~~~giiD~ii~ 269 (322)
T CHL00198 255 SEDLKVLGIIDEIIP 269 (322)
T ss_pred HHHHHhCCCCeEecc
Confidence 999999999999986
No 109
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.37 E-value=6.2e-06 Score=85.22 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=92.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-----NSPGGsV~a----------------~~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++.++..+.|+|.= =|-|+++.. ...++..|..+++||++.+.|
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 68888889999999888765555554421 144556543 123566788889999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccC--cEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024122 173 VAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 250 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pn--a~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d 250 (272)
.|..+|.-++++||. |++.++ ++|.+.....|.. -+..- .. .+.+..| .....+++-.+
T Consensus 106 ~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~---p~~g~----~~--------~L~r~vG--~~~A~~llltG 166 (699)
T TIGR02440 106 ACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLL---PGSGG----TQ--------RLPRLIG--VSTALDMILTG 166 (699)
T ss_pred EeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCC---CCccH----HH--------HHHHhcC--HHHHHHHHHcC
Confidence 999999999999999 999986 5666554444321 00000 00 0111112 22233444456
Q ss_pred ceecHHHHHHcCCceeeccCC
Q 024122 251 RFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 251 ~~lsa~EAle~GLID~I~~~~ 271 (272)
..++++||+++||||+|.+.+
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred CcCCHHHHHhCCCCcEecChh
Confidence 789999999999999998753
No 110
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.36 E-value=4.8e-06 Score=83.85 Aligned_cols=141 Identities=11% Similarity=0.099 Sum_probs=91.2
Q ss_pred eChhHHHHHHHHHHHHh-ccCCCCCEEEEEe-----CCCCcHHHHH-------------------HHHHHHHhhCCCeEE
Q 024122 114 INSMVAQRAISQLVTLA-TIDEDADILMYLN-----CPGGSIYSVL-------------------AIYDCMSWIKPKVGT 168 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~-~~d~~~~I~L~IN-----SPGGsV~a~~-------------------~I~d~I~~~~~pV~t 168 (272)
++.++.+.+.+.+..++ .++..+.|+|.=+ |.|+++.... .+.+.|+.+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788889999999887 4555565565432 5566654210 134556678899999
Q ss_pred EEccccchHHHHHHhcCccCcEEeccC--cEEeeecCC-CCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 024122 169 VCFGVAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQ-SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQ 245 (272)
Q Consensus 169 vv~G~AASaa~lIa~ag~~g~R~a~Pn--a~imiHqp~-~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~ 245 (272)
.+.|.|..+|..|+++||. |++.++ ++|.+-... .|.. -+..-. . .+...+........+
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~~~Gl~---P~~gg~----~--------rl~~~~~vg~~~A~~ 191 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVPLLGVL---PGTGGL----T--------RVTDKRKVRRDLADI 191 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccccC---CCcchH----H--------HhhhhhhcCHHHHHH
Confidence 9999999999999999999 999987 677553321 2211 110000 0 011111223333344
Q ss_pred HhhCCceecHHHHHHcCCceeeccCC
Q 024122 246 YTERDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 246 ~~~~d~~lsa~EAle~GLID~I~~~~ 271 (272)
++-.+..++++||+++||||++.+.+
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d 217 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPS 217 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHH
Confidence 44346789999999999999998743
No 111
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.36 E-value=1.3e-05 Score=73.63 Aligned_cols=136 Identities=14% Similarity=0.185 Sum_probs=94.8
Q ss_pred cCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHH-------HHHHHHHHH---hhCCCeEEEEccc
Q 024122 104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS-------VLAIYDCMS---WIKPKVGTVCFGV 173 (272)
Q Consensus 104 ~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a-------~~~I~d~I~---~~~~pV~tvv~G~ 173 (272)
++++....|-+++...+...+-+..+.+. .-+|+-.+||||..+.. +..+...+. ....|+++++.|-
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~~--~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEKF--GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 34444567888888888887766655443 46899999999986421 234555444 4457999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|.|+|++.+..+|. .+|.|++.+.+-.|.+.. .+. +++ ....++..+.+ -+
T Consensus 147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~a------------~il-~~~----------~~~a~~aa~~~----~~ 197 (256)
T PRK12319 147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGFA------------SIL-WKD----------GSRATEAAELM----KI 197 (256)
T ss_pred cCcHHHHHhhcCCE--EEEecCceEEEcCHHHHH------------HHH-hcC----------cccHHHHHHHc----CC
Confidence 99999999999998 999999999887774310 010 000 01122333333 25
Q ss_pred cHHHHHHcCCceeeccC
Q 024122 254 SAAEAMEFGLIDGILET 270 (272)
Q Consensus 254 sa~EAle~GLID~I~~~ 270 (272)
|+.++.+.|+||+|++.
T Consensus 198 ~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 198 TAGELLEMGVVDKVIPE 214 (256)
T ss_pred CHHHHHHCCCCcEecCC
Confidence 99999999999999974
No 112
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.35 E-value=7e-06 Score=85.02 Aligned_cols=138 Identities=16% Similarity=0.206 Sum_probs=93.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------------HHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------------~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++..- ..+++.|..+++||++.+.
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 110 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN 110 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 678888899999998887665555554321 345555321 1345567778899999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-++++||. |++.++++|.+-....|.. -+..-. .. +.+..| .....+++-.+.
T Consensus 111 G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~---p~~g~~----~~--------L~rlvG--~~~A~~llltG~ 171 (715)
T PRK11730 111 GYALGGGCECVLATDY--RVASPDARIGLPETKLGIM---PGFGGT----VR--------LPRLIG--ADNALEWIAAGK 171 (715)
T ss_pred CEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCC---CCchHH----HH--------HHHhcC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999987754443321 011000 00 111122 223334444467
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++|+||+++||||+|.+.
T Consensus 172 ~~~A~eA~~~GLv~~vv~~ 190 (715)
T PRK11730 172 DVRAEDALKVGAVDAVVAP 190 (715)
T ss_pred cCCHHHHHHCCCCeEecCH
Confidence 8999999999999999864
No 113
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.34 E-value=1.4e-05 Score=77.89 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=95.9
Q ss_pred cEEEEcce-----eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------H-------HHHH
Q 024122 106 RIIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------L-------AIYD 157 (272)
Q Consensus 106 rII~l~G~-----Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------~-------~I~d 157 (272)
++|.|+-| ++.++...+...|..++.++..+.|+|.=+ |-||++... . .+..
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 132 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY 132 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 45667665 888999999999999988766655544322 446766431 1 1222
Q ss_pred HHHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 024122 158 CMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 237 (272)
Q Consensus 158 ~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg 237 (272)
.|..+++|+++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. -|+.-.. .+.++... .+
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl~---PdvG~s~-~L~rl~g~----~g---- 198 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGFH---PDAGASY-YLSRLPGY----LG---- 198 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCCC---CCccHHH-HHHHhcCH----HH----
Confidence 355678999999999999999999999999 9999999887655444432 1111000 01111100 00
Q ss_pred CCHHHHHHHhhCCceecHHHHHHcCCceeeccCC
Q 024122 238 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 238 ~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~~ 271 (272)
.++ .+. +..++++||+++||+|++++.+
T Consensus 199 ---~~L--~LT-G~~i~a~eA~~~GLa~~~v~~~ 226 (407)
T PLN02851 199 ---EYL--ALT-GQKLNGVEMIACGLATHYCLNA 226 (407)
T ss_pred ---HHH--HHh-CCcCCHHHHHHCCCceeecCHh
Confidence 011 122 5689999999999999998754
No 114
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.34 E-value=1e-05 Score=76.19 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=93.8
Q ss_pred cCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhhCCCeEEEEccc
Q 024122 104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGV 173 (272)
Q Consensus 104 ~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~-------a~~~I~d~I---~~~~~pV~tvv~G~ 173 (272)
++++-...|.+++...+....-+..+++- .-+|+-.+||||..+. .+..|...+ .....|+++++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~f--~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAERF--KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 34444456888888888877766655543 4689999999998732 234455555 45568999999999
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcee
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 253 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~l 253 (272)
|+|+|++.+..+|. .+|.|++.+.+-.|.+.. .+ . +++. ...++..+. .-+
T Consensus 200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~a-----~I--l------~kd~----------~~a~~aae~----~~~ 250 (316)
T TIGR00513 200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGCA-----AI--L------WKDA----------SKAPKAAEA----MKI 250 (316)
T ss_pred cccHHHhhhccCCE--EEEecCceEEecCHHHHH-----HH--h------ccch----------hhHHHHHHH----ccC
Confidence 99999998888988 999999999888775421 00 0 0000 001222222 336
Q ss_pred cHHHHHHcCCceeecc
Q 024122 254 SAAEAMEFGLIDGILE 269 (272)
Q Consensus 254 sa~EAle~GLID~I~~ 269 (272)
|+.++.+.|+||+|++
T Consensus 251 ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 251 TAPDLKELGLIDSIIP 266 (316)
T ss_pred CHHHHHHCCCCeEecc
Confidence 8999999999999986
No 115
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.33 E-value=1.6e-05 Score=77.35 Aligned_cols=138 Identities=16% Similarity=0.117 Sum_probs=92.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------H----H---HHHHHHhhCCCeEEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------L----A---IYDCMSWIKPKVGTVC 170 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~------------~----~---I~d~I~~~~~pV~tvv 170 (272)
++.++...+.+.|..++.++..+.|+|.=. |-||++.+- . . +...|..+++||++.+
T Consensus 61 Ls~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v 140 (401)
T PLN02157 61 LTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAIL 140 (401)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788889999999999887766555554322 557776431 0 1 2234677889999999
Q ss_pred ccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024122 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 250 (272)
Q Consensus 171 ~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d 250 (272)
.|.|..+|.-|+++||. |++.++++|.+-....|.. -+..-.. .+. +..|. .-..++=.+
T Consensus 141 ~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl~---Pd~G~s~-~L~-----------rl~G~---~a~~L~LTG 200 (401)
T PLN02157 141 NGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGFH---PDAGASF-NLS-----------HLPGR---LGEYLGLTG 200 (401)
T ss_pred eCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCCC---CCccHHH-HHH-----------HhhhH---HHHHHHHcC
Confidence 99999999999999999 9999999987654443322 1111000 011 11110 011222235
Q ss_pred ceecHHHHHHcCCceeeccCC
Q 024122 251 RFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 251 ~~lsa~EAle~GLID~I~~~~ 271 (272)
..++++||+++||||++++.+
T Consensus 201 ~~i~A~eA~~~GLv~~vVp~~ 221 (401)
T PLN02157 201 LKLSGAEMLACGLATHYIRSE 221 (401)
T ss_pred CcCCHHHHHHcCCceEEeCHh
Confidence 789999999999999998653
No 116
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.32 E-value=1.3e-05 Score=82.96 Aligned_cols=138 Identities=13% Similarity=0.148 Sum_probs=93.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a------------------~~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.
T Consensus 31 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~ 110 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAIN 110 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 678888999999999887765665554321 33445421 23466778888999999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 251 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~ 251 (272)
|.|..+|.-|+++||. |++.++++|.+-....|..- ...-. ..+ .+..|. ....+++-.+.
T Consensus 111 G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~P---g~Ggt----~rL--------~rliG~--~~A~~llltG~ 171 (714)
T TIGR02437 111 GIALGGGCECVLATDF--RIADDTAKIGLPETKLGIMP---GFGGT----VRL--------PRVIGA--DNALEWIASGK 171 (714)
T ss_pred CeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCCC---CccHH----HHH--------HHHhCH--HHHHHHHHcCC
Confidence 9999999999999999 99999999877554433210 00000 001 111122 22233333467
Q ss_pred eecHHHHHHcCCceeeccC
Q 024122 252 FLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 252 ~lsa~EAle~GLID~I~~~ 270 (272)
.++++||+++||||++.+.
T Consensus 172 ~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 172 ENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred cCCHHHHHHCCCCcEeeCh
Confidence 8999999999999999864
No 117
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.31 E-value=1.9e-05 Score=76.31 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=93.0
Q ss_pred EEEcce-----eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHHH-------------------HHHHHH
Q 024122 108 IFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL-------------------AIYDCM 159 (272)
Q Consensus 108 I~l~G~-----Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN----SPGGsV~a~~-------------------~I~d~I 159 (272)
|.|+-| ++.++...+.+.|..++.++..+.|+|.=+ |-||++.... .+...|
T Consensus 22 ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i 101 (381)
T PLN02988 22 LTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVM 101 (381)
T ss_pred EEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence 445554 788899999999999987665555544321 4467765311 122356
Q ss_pred HhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 024122 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQP 239 (272)
Q Consensus 160 ~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~ 239 (272)
..+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. -+..-. -.+.+ +....+
T Consensus 102 ~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl~---Pd~G~s-~~L~r----l~G~~~------ 165 (381)
T PLN02988 102 ATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGLF---PDVGAS-YFLSR----LPGFFG------ 165 (381)
T ss_pred HHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCcC---CCccHH-HHHHH----HHHHHH------
Confidence 7788999999999999999999999999 9999999886544333321 111100 00111 111000
Q ss_pred HHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 240 IEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 240 ~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
..++=-+..++++||++.||+|++++.
T Consensus 166 ----~~l~LTG~~i~a~eA~~~GLv~~vv~~ 192 (381)
T PLN02988 166 ----EYVGLTGARLDGAEMLACGLATHFVPS 192 (381)
T ss_pred ----HHHHHcCCCCCHHHHHHcCCceEecCH
Confidence 112222567999999999999999865
No 118
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.31 E-value=1e-05 Score=78.48 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=87.8
Q ss_pred ceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhhCCCeEEEEccccchHHHHH
Q 024122 112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGVAASQAAII 181 (272)
Q Consensus 112 G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~-------a~~~I~d~I---~~~~~pV~tvv~G~AASaa~lI 181 (272)
|-++++..+....-+..++.- .-+|+-.|||||..+. .+.+|...+ ...+.|+++++.|-+.|+|++.
T Consensus 200 G~~~peGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 456677777777766655443 4689999999997642 234455544 4556899999999999999999
Q ss_pred HhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHc
Q 024122 182 LAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 261 (272)
Q Consensus 182 a~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~ 261 (272)
+.+||. .+|.|++.+.+-.|.+.. .+. +++. .. .++..+ ..-+||++++++
T Consensus 278 lg~aD~--VlMle~A~ysVisPEgaA------------sIL-wkd~---------~~-A~eAAe----alkitA~dL~~~ 328 (431)
T PLN03230 278 IGCGNR--MLMMENAVYYVASPEACA------------AIL-WKSA---------AA-APKAAE----ALRITAAELVKL 328 (431)
T ss_pred hhcCCE--EEEecCCEEEecCHHHHH------------HHH-hccc---------cc-hHHHHH----HcCCCHHHHHhC
Confidence 998998 999999999887774310 000 0000 00 111112 235899999999
Q ss_pred CCceeeccC
Q 024122 262 GLIDGILET 270 (272)
Q Consensus 262 GLID~I~~~ 270 (272)
|+||+|+..
T Consensus 329 GiID~II~E 337 (431)
T PLN03230 329 GVVDEIVPE 337 (431)
T ss_pred CCCeEeccC
Confidence 999999863
No 119
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.30 E-value=7.9e-06 Score=77.66 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=88.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHHH-------------------HHHHHHHHhhCCCeEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYSV-------------------LAIYDCMSWIKPKVGTV 169 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-----NSPGGsV~a~-------------------~~I~d~I~~~~~pV~tv 169 (272)
++.++.+.+.+.+..++.++..+.|+|.= =|-|+++..- ..++..|..+++||++.
T Consensus 27 l~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 106 (342)
T PRK05617 27 LSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIAL 106 (342)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 78888889999888887765444444321 1234554321 12345577788999999
Q ss_pred EccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCC---cCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 024122 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG---GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQY 246 (272)
Q Consensus 170 v~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~---G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~ 246 (272)
+.|.|..+|.-++++||. |++.++++|.+-....|.. |...-+. +..| ....++
T Consensus 107 VnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L~------------------r~~g---~~a~~l 163 (342)
T PRK05617 107 MDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFLS------------------RAPG---ALGTYL 163 (342)
T ss_pred EcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEeh------------------hccc---HHHHHH
Confidence 999999999999999999 9999999987655443321 2111111 0001 011222
Q ss_pred hhCCceecHHHHHHcCCceeeccC
Q 024122 247 TERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 247 ~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+-.+..++|+||+++||||++++.
T Consensus 164 lltG~~i~A~eA~~~GLv~~vv~~ 187 (342)
T PRK05617 164 ALTGARISAADALYAGLADHFVPS 187 (342)
T ss_pred HHcCCCCCHHHHHHcCCcceecCH
Confidence 223567999999999999999864
No 120
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.30 E-value=1.6e-05 Score=76.57 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=92.2
Q ss_pred EEEcce-----eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH----------H-------HHHHHHHh
Q 024122 108 IFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV----------L-------AIYDCMSW 161 (272)
Q Consensus 108 I~l~G~-----Id~~~a~~ii~~L~~l~~~d~~~~I~L~I----NSPGGsV~a~----------~-------~I~d~I~~ 161 (272)
|.|+-| ++.++...+.+.|..++.++.++.|+|.= =|-||++... . .+...|..
T Consensus 24 ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 103 (379)
T PLN02874 24 ITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHT 103 (379)
T ss_pred EEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHh
Confidence 445554 78889999999999988766555444421 1335655321 0 11234667
Q ss_pred hCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 024122 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIE 241 (272)
Q Consensus 162 ~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e 241 (272)
+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. -+..-.. .+ . ++....
T Consensus 104 ~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl~---p~~g~~~-~L---~-rl~g~~--------- 164 (379)
T PLN02874 104 YKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGFH---TDCGFSY-IL---S-RLPGHL--------- 164 (379)
T ss_pred CCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCcC---CChhHHH-HH---H-hhhHHH---------
Confidence 78999999999999999999999999 9999999987655444322 1111000 01 0 110100
Q ss_pred HHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 242 KVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 242 ~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
..+++=.+..++++||+++||||++++.
T Consensus 165 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 192 (379)
T PLN02874 165 -GEYLALTGARLNGKEMVACGLATHFVPS 192 (379)
T ss_pred -HHHHHHcCCcccHHHHHHcCCccEEeCH
Confidence 1122223568999999999999999864
No 121
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.28 E-value=1.9e-05 Score=81.69 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=92.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a----------------~~~I~d~I~~~~~pV~tvv~G 172 (272)
++.++.+.+.+.|..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+.|
T Consensus 31 l~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 110 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHG 110 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 678888899999998887654454444311 34455432 123567788889999999999
Q ss_pred ccchHHHHHHhcCccCcEEeccCc--EEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024122 173 VAASQAAIILAGGEKGMRYAMPNA--RIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 250 (272)
Q Consensus 173 ~AASaa~lIa~ag~~g~R~a~Pna--~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d 250 (272)
.|..+|.-++++||. |++.+++ +|.+.....|.. -+..- . ..+.+..| .....+++-.+
T Consensus 111 ~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~---p~~gg----~--------~~L~r~vG--~~~A~~llltG 171 (708)
T PRK11154 111 ACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLL---PGSGG----T--------QRLPRLIG--VSTALDMILTG 171 (708)
T ss_pred eeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCC---CCccH----H--------hHHHhhcC--HHHHHHHHHhC
Confidence 999999999999999 9999875 676655444321 00000 0 00111122 23334444457
Q ss_pred ceecHHHHHHcCCceeeccC
Q 024122 251 RFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 251 ~~lsa~EAle~GLID~I~~~ 270 (272)
..++++||+++||||++.+.
T Consensus 172 ~~i~a~eA~~~GLv~~vv~~ 191 (708)
T PRK11154 172 KQLRAKQALKLGLVDDVVPH 191 (708)
T ss_pred CcCCHHHHHHCCCCcEecCh
Confidence 78999999999999999875
No 122
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.25 E-value=1.3e-05 Score=80.76 Aligned_cols=140 Identities=12% Similarity=0.110 Sum_probs=88.8
Q ss_pred eChhHHHHHHHHHHHHh-ccCCCCCEEEEEe-----CCCCcHHHH-------------------HHHHHHHHhhCCCeEE
Q 024122 114 INSMVAQRAISQLVTLA-TIDEDADILMYLN-----CPGGSIYSV-------------------LAIYDCMSWIKPKVGT 168 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~-~~d~~~~I~L~IN-----SPGGsV~a~-------------------~~I~d~I~~~~~pV~t 168 (272)
++.++.+.+.+.|..++ .++..+.|+|.-. |.|+++... ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67778888999999887 4554555555432 567765431 1244556678899999
Q ss_pred EEccccchHHHHHHhcCccCcEEeccC--cEEeeecCC-CCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 024122 169 VCFGVAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQ-SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQ 245 (272)
Q Consensus 169 vv~G~AASaa~lIa~ag~~g~R~a~Pn--a~imiHqp~-~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~ 245 (272)
.+.|.|..+|.-++++||. |++.++ ++|.+-... .|.. -+..- ... +............+
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~~lGl~---P~~gg----~~~--------l~~~~~vg~~~A~~ 187 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVPLLGVL---PGTGG----LTR--------VTDKRRVRRDHADI 187 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccCcC---Cccch----hhh--------ccccchhCHHHHHH
Confidence 9999999999999999999 999986 566542221 2211 11000 000 00000112222333
Q ss_pred HhhCCceecHHHHHHcCCceeeccC
Q 024122 246 YTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 246 ~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
++-.++.++++||+++||||++.+.
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~ 212 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKP 212 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeCh
Confidence 3333567999999999999999875
No 123
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.19 E-value=2.9e-05 Score=80.74 Aligned_cols=137 Identities=11% Similarity=0.104 Sum_probs=90.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe------CCCCcHHH----------------HHHHHHHHHhhCCCeEEEEc
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCF 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN------SPGGsV~a----------------~~~I~d~I~~~~~pV~tvv~ 171 (272)
++.++.+.+.+.|..++.++..+.++| +. |-|+++.. ...+++.|..+++||++.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~vVv-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSAVL-ISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEEEE-EECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 677888899999998887654443333 33 33455432 23466778888999999999
Q ss_pred cccchHHHHHHhcCccCcEEeccCc--EEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Q 024122 172 GVAASQAAIILAGGEKGMRYAMPNA--RIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 249 (272)
Q Consensus 172 G~AASaa~lIa~ag~~g~R~a~Pna--~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~ 249 (272)
|.|..+|.-++++||. |++.+++ +|.+.....|.. -+..- ... +.+..|. ....+++-.
T Consensus 117 G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~---Pg~Gg----t~r--------LprliG~--~~A~~l~lt 177 (737)
T TIGR02441 117 GSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLL---PGAGG----TQR--------LPKLTGV--PAALDMMLT 177 (737)
T ss_pred CEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCC---CCccH----hhh--------HHHhhCH--HHHHHHHHc
Confidence 9999999999999999 9999884 666544433321 00000 000 1111121 222334445
Q ss_pred CceecHHHHHHcCCceeeccC
Q 024122 250 DRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 250 d~~lsa~EAle~GLID~I~~~ 270 (272)
+..++++||+++||||+|.+.
T Consensus 178 G~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 178 GKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred CCcCCHHHHHHCCCCeEecCC
Confidence 778999999999999999874
No 124
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.15 E-value=3.1e-05 Score=79.43 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=87.3
Q ss_pred cceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHHHH---hhCCCeEEEEccccchHHHH
Q 024122 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGVAASQAAI 180 (272)
Q Consensus 111 ~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~-------a~~~I~d~I~---~~~~pV~tvv~G~AASaa~l 180 (272)
.|-.++...+...+-+..++.- .-+|+-.|||||..+. .+.+|...+. ....|+++++.|-|+|+|++
T Consensus 220 fG~~~peGyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAl 297 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGAL 297 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHH
Confidence 4445566666666655554443 4689999999998752 3445655555 45679999999999999999
Q ss_pred HHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHH
Q 024122 181 ILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 260 (272)
Q Consensus 181 Ia~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle 260 (272)
.++.+|. .+|.|++.+.+-.|.+.. .+. +++ .....+..+. .-+||++-++
T Consensus 298 A~g~aD~--VlMle~A~~sVisPEgaA------------sIL-wkd----------~~~A~eAAe~----lkiTa~dL~~ 348 (762)
T PLN03229 298 AIGCANK--LLMLENAVFYVASPEACA------------AIL-WKS----------AKAAPKAAEK----LRITAQELCR 348 (762)
T ss_pred HhhcCCE--EEEecCCeEEecCHHHHH------------HHH-hcC----------cccHHHHHHH----cCCCHHHHHh
Confidence 9999998 999999998776664310 010 000 0011222222 3489999999
Q ss_pred cCCceeecc
Q 024122 261 FGLIDGILE 269 (272)
Q Consensus 261 ~GLID~I~~ 269 (272)
+|+||+|+.
T Consensus 349 lGiiD~IIp 357 (762)
T PLN03229 349 LQIADGIIP 357 (762)
T ss_pred CCCCeeecc
Confidence 999999986
No 125
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.10 E-value=0.00011 Score=66.89 Aligned_cols=129 Identities=14% Similarity=0.201 Sum_probs=83.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcH----------HHHHHHHHHHHhh---CCCeEEEEccccchHHHH
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI----------YSVLAIYDCMSWI---KPKVGTVCFGVAASQAAI 180 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV----------~a~~~I~d~I~~~---~~pV~tvv~G~AASaa~l 180 (272)
++-+-+.+....+..+...+..-+|+..+|+||=.+ .+.-.+..++... +.|+++++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 554556666666665422224579999999999543 3333333444444 489999999999999988
Q ss_pred HHh-cCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh--CCceecHHH
Q 024122 181 ILA-GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTE--RDRFLSAAE 257 (272)
Q Consensus 181 Ia~-ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~--~d~~lsa~E 257 (272)
.+. .+|. .++.|++.+.+..|.+. ++.+.++.++.++..+ ...-.+++.
T Consensus 125 amg~~ad~--v~Alp~A~i~vm~~e~a--------------------------a~I~~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQADR--IIALPGAMVHVMDLESM--------------------------ARVTKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcCe--EEEcCCcEEEecCHHHH--------------------------HHHHccCHhHHHHHHHhhhhhccCHHH
Confidence 875 3666 99999999977766431 0011122233333322 124467888
Q ss_pred HHHcCCceeeccC
Q 024122 258 AMEFGLIDGILET 270 (272)
Q Consensus 258 Ale~GLID~I~~~ 270 (272)
+.++|+||+|++.
T Consensus 177 ~~~~G~vd~vi~~ 189 (238)
T TIGR03134 177 FVKLGGVHALLDV 189 (238)
T ss_pred HHhCCCccEEeCC
Confidence 9999999999874
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.99 E-value=0.00011 Score=74.05 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=90.1
Q ss_pred eChhHHHHHHHHHHHHhcc-CCCCCEEEEEe-----CCCCcHH-----------HH----HHHHHHHHhhCCCeEEEE-c
Q 024122 114 INSMVAQRAISQLVTLATI-DEDADILMYLN-----CPGGSIY-----------SV----LAIYDCMSWIKPKVGTVC-F 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~-d~~~~I~L~IN-----SPGGsV~-----------a~----~~I~d~I~~~~~pV~tvv-~ 171 (272)
++.++...+.+.+..++.+ +..+.|+|.=. |-|+++. .. ..++..|..+++||++.+ .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 6788888999999988754 33343333211 2234431 11 125567888899999999 8
Q ss_pred cccchHH-HHHHhcCccCcEEe-------ccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHh-CCCHHH
Q 024122 172 GVAASQA-AIILAGGEKGMRYA-------MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT-GQPIEK 242 (272)
Q Consensus 172 G~AASaa-~lIa~ag~~g~R~a-------~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~t-g~~~e~ 242 (272)
|.|..+| .=++++||. |++ .++++|.+-....|..-..--.. .+.+.. |.+...
T Consensus 375 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~---------------~L~~~v~G~~~a~ 437 (546)
T TIGR03222 375 GSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGLS---------------RLATRFYAEPAPV 437 (546)
T ss_pred CeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcHH---------------HHHHHhcCchhHH
Confidence 9999999 999999999 999 89999877665544321100110 112222 332221
Q ss_pred HHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 243 VQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 243 I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
-.+++-.+..++++||+++|||+++.+.
T Consensus 438 ~~~~~ltg~~i~A~eA~~~Glv~~vv~~ 465 (546)
T TIGR03222 438 AAVRDKIGQALDAEEAERLGLVTAAPDD 465 (546)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcccccCc
Confidence 1112223578999999999999999765
No 127
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.87 E-value=9.5e-05 Score=74.01 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=93.7
Q ss_pred cceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCC----------cHHHHHHHHHHHHhhCCCeEEEEccccchHHHH
Q 024122 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG----------SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 180 (272)
Q Consensus 111 ~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGG----------sV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~l 180 (272)
+|.+++..++...+.+..+.+. .-+|+..+||||= .+..+-.+...+.....|.++++.|.++++|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~~--~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDAF--NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 5778898999988877766543 4689999999995 345566677777777889999999999998877
Q ss_pred HHhc----CccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHH
Q 024122 181 ILAG----GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 256 (272)
Q Consensus 181 Ia~a----g~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~ 256 (272)
.+++ +|. .++.|++++.+..|.+... +. ..+++.+..+. ++. -.+++.+..+ .+.++.
T Consensus 406 am~~~~~~~d~--~~a~p~a~~~v~~pe~a~~-----i~-~~~~l~~~~~~-----~~~---~~~~~~~~~~--~~~~~~ 467 (512)
T TIGR01117 406 AMCSKHLGADQ--VYAWPTAEIAVMGPAGAAN-----II-FRKDIKEAKDP-----AAT---RKQKIAEYRE--EFANPY 467 (512)
T ss_pred HhccccCCCCE--EEEcCCCeEeecCHHHHHH-----HH-hhhhcccccCH-----HHH---HHHHHHHHHH--hhcCHH
Confidence 7754 555 8999999998888764211 00 00011000000 000 0122333332 366888
Q ss_pred HHHHcCCceeeccC
Q 024122 257 EAMEFGLIDGILET 270 (272)
Q Consensus 257 EAle~GLID~I~~~ 270 (272)
.+.+.|+||.|+++
T Consensus 468 ~~a~~g~vD~VI~P 481 (512)
T TIGR01117 468 KAAARGYVDDVIEP 481 (512)
T ss_pred HHHhcCCCCeeECh
Confidence 99999999999875
No 128
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.82 E-value=0.00021 Score=72.09 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=88.1
Q ss_pred eChhHHHHHHHHHHHHhc-cCCCCCEEEEE-----eCCCCcHH-----------HH----HHHHHHHHhhCCCeEEEEc-
Q 024122 114 INSMVAQRAISQLVTLAT-IDEDADILMYL-----NCPGGSIY-----------SV----LAIYDCMSWIKPKVGTVCF- 171 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~-~d~~~~I~L~I-----NSPGGsV~-----------a~----~~I~d~I~~~~~pV~tvv~- 171 (272)
++.++.+.+.+.+..++. ++..+.|+|.= =|-|+++. .. ..++..|..+++||++.+.
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~ 378 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP 378 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 678888889999988875 34444444422 13344521 00 1244566777899999997
Q ss_pred cccchHH-HHHHhcCccCcEEec-------cCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHH-hCCCHHH
Q 024122 172 GVAASQA-AIILAGGEKGMRYAM-------PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAF-TGQPIEK 242 (272)
Q Consensus 172 G~AASaa-~lIa~ag~~g~R~a~-------Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~-tg~~~e~ 242 (272)
|.|..+| .-++++||. |++. ++++|.+-....|..-..--... +.+. .|.....
T Consensus 379 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~---------------L~r~~vG~~~A~ 441 (550)
T PRK08184 379 GSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLSR---------------LARRFYGEPDPL 441 (550)
T ss_pred CceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHHH---------------hHHHhcChHHHH
Confidence 9999999 999999999 9999 99998776555443210000100 1111 1322111
Q ss_pred HHHHhhCCceecHHHHHHcCCceeeccCC
Q 024122 243 VQQYTERDRFLSAAEAMEFGLIDGILETE 271 (272)
Q Consensus 243 I~~~~~~d~~lsa~EAle~GLID~I~~~~ 271 (272)
-..++-.+..++++||+++||||++.+.+
T Consensus 442 ~~~l~~tg~~i~A~eA~~~GLv~~vv~~~ 470 (550)
T PRK08184 442 AAVRAKIGQPLDADAAEELGLVTAAPDDI 470 (550)
T ss_pred HHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence 11111235789999999999999998753
No 129
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.34 E-value=0.00052 Score=68.36 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=90.5
Q ss_pred ceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhhCCCeEEEEccccchHHHHH
Q 024122 112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 181 (272)
Q Consensus 112 G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPG----------GsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~lI 181 (272)
|.++.+.++....-+..++.. .-+|+..+|+|| |.+..+-.+.+++.....|+++++.|.+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 678999998888877766653 358999999999 66778889999999999999999999999988877
Q ss_pred HhcCccC--cEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHH
Q 024122 182 LAGGEKG--MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 259 (272)
Q Consensus 182 a~ag~~g--~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAl 259 (272)
+++...+ ..++.|++++.+..|.+... +. ..+++......=.+.-++ ..+++++..+ ...++..|.
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e~a~~-----i~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~a 453 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPEGAAS-----IL-YRDELEAAEAEGADPEAQ----RAEKIAEYED--ELSSPYRAA 453 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HHHHHH-----HH-THHHHHHSCHCCHSHHHH----HHHHHHHHHH--HHSSHHHHH
T ss_pred hcccccchhhhhhhhcceeeecChhhhhe-----ee-ehhhhhhhhcccchhHHH----HHHHHHHHHH--hcCCHHHHH
Confidence 7766222 37889999998877753210 10 000000000000000000 1122333322 346888999
Q ss_pred HcCCceeeccCC
Q 024122 260 EFGLIDGILETE 271 (272)
Q Consensus 260 e~GLID~I~~~~ 271 (272)
+.|++|.|+++.
T Consensus 454 ~~~~~D~ii~p~ 465 (493)
T PF01039_consen 454 SRGYVDDIIDPA 465 (493)
T ss_dssp HTTSSSEESSGG
T ss_pred hcCCCCCccCHH
Confidence 999999998763
No 130
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.32 E-value=0.002 Score=65.40 Aligned_cols=93 Identities=15% Similarity=0.064 Sum_probs=69.4
Q ss_pred cceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCc----------HHHHHHHHHHHHhhCCCeEEEEccccchHHHH
Q 024122 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS----------IYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 180 (272)
Q Consensus 111 ~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGs----------V~a~~~I~d~I~~~~~pV~tvv~G~AASaa~l 180 (272)
+|.++.+.++....-+...++- .-+|+..+|+||-. +..+-.+..++.....|+++++.|.|..+|++
T Consensus 379 ~g~l~~~~a~Kaarfi~lc~~~--~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~ 456 (569)
T PLN02820 379 NGILFTESALKGAHFIELCAQR--GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNY 456 (569)
T ss_pred CCccCHHHHHHHHHHHHHHHhc--CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHH
Confidence 3668888888777666655543 46899999999944 44556677777778889999999999999999
Q ss_pred HHhcCcc--CcEEeccCcEEeeecCCC
Q 024122 181 ILAGGEK--GMRYAMPNARIMLNQPQS 205 (272)
Q Consensus 181 Ia~ag~~--g~R~a~Pna~imiHqp~~ 205 (272)
.+++... ...++.|++.+.+..|.+
T Consensus 457 aM~g~~~~~d~~~awp~A~i~vmg~e~ 483 (569)
T PLN02820 457 GMCGRAYSPNFLFMWPNARIGVMGGAQ 483 (569)
T ss_pred HhcCcCCCCCEEEECCCCeEEecCHHH
Confidence 8874321 237888999988777643
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.27 E-value=0.0039 Score=58.38 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=68.2
Q ss_pred EEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHH-------HHHHH---HhhCCCeEEEEccccchHH
Q 024122 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA-------IYDCM---SWIKPKVGTVCFGVAASQA 178 (272)
Q Consensus 109 ~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~-------I~d~I---~~~~~pV~tvv~G~AASaa 178 (272)
|++|.++...++.+...++...+. .-+++...+|+|....++.. +...+ .....|.++++.|-|..++
T Consensus 132 f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred cccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 468889999999999887776554 35888899999988766542 22233 2334799999999888887
Q ss_pred HHHH-hcCccCcEEeccCcEEeeecC
Q 024122 179 AIIL-AGGEKGMRYAMPNARIMLNQP 203 (272)
Q Consensus 179 ~lIa-~ag~~g~R~a~Pna~imiHqp 203 (272)
++.+ +.+|. +++.|++.+++..|
T Consensus 210 aas~a~~~D~--iia~p~A~ig~aGp 233 (292)
T PRK05654 210 SASFAMLGDI--IIAEPKALIGFAGP 233 (292)
T ss_pred HHHHHHcCCE--EEEecCcEEEecCH
Confidence 6654 45887 89999999988666
No 132
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.24 E-value=0.0015 Score=60.74 Aligned_cols=107 Identities=18% Similarity=0.302 Sum_probs=75.5
Q ss_pred CCCEEEEEeCCCCcH-------HHHHHHHHHH---HhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCC
Q 024122 135 DADILMYLNCPGGSI-------YSVLAIYDCM---SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (272)
Q Consensus 135 ~~~I~L~INSPGGsV-------~a~~~I~d~I---~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~ 204 (272)
.-+|+.+||+||-.. -.+.+|...| ..++.|++++|.|-..|+|++-...||+ .+|+.|+++.+-.|.
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 468999999999542 2345565544 4457899999999999999999999999 899999999888885
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 205 SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 205 ~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
+- ++= .++.- .+. ++..+.| -+|+.+-+++|+||.|+..
T Consensus 228 G~----AsI---LWkD~---------------~ka-~eAAe~m----kita~dLk~lgiID~II~E 266 (317)
T COG0825 228 GC----ASI---LWKDA---------------SKA-KEAAEAM----KITAHDLKELGIIDGIIPE 266 (317)
T ss_pred hh----hhh---hhcCh---------------hhh-HHHHHHc----CCCHHHHHhCCCcceeccC
Confidence 42 111 11110 011 1222233 3789999999999999863
No 133
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.21 E-value=0.0042 Score=57.99 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=87.0
Q ss_pred EEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHH-------HHH---HHhhCCCeEEEEccccchHH
Q 024122 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI-------YDC---MSWIKPKVGTVCFGVAASQA 178 (272)
Q Consensus 109 ~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I-------~d~---I~~~~~pV~tvv~G~AASaa 178 (272)
|++|.+.....+.+...++.+.+. .-+++...+|+|.....+... ... +.....|.++++.|-|..++
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~ 208 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV 208 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 467889999999999888776544 468999999999876655422 212 22234699999999888887
Q ss_pred HHHH-hcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCceecHHH
Q 024122 179 AIIL-AGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 257 (272)
Q Consensus 179 ~lIa-~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~lsa~E 257 (272)
++.+ +.+|. +++.|++.+++..|. + +.+.++. ++ . +-+-+++-
T Consensus 209 aas~a~~~D~--iia~p~A~ig~aGpr---------V-----------------ie~ti~e---~l----p-e~~q~ae~ 252 (285)
T TIGR00515 209 SASFAMLGDL--NIAEPKALIGFAGPR---------V-----------------IEQTVRE---KL----P-EGFQTSEF 252 (285)
T ss_pred HHHHHhCCCE--EEEECCeEEEcCCHH---------H-----------------HHHHhcC---cc----c-hhcCCHHH
Confidence 7665 58887 899999999776552 0 1112221 11 1 22557777
Q ss_pred HHHcCCceeeccCC
Q 024122 258 AMEFGLIDGILETE 271 (272)
Q Consensus 258 Ale~GLID~I~~~~ 271 (272)
+.+.|+||.|++.+
T Consensus 253 ~~~~G~vD~iv~~~ 266 (285)
T TIGR00515 253 LLEHGAIDMIVHRP 266 (285)
T ss_pred HHhCCCCcEEECcH
Confidence 88899999998753
No 134
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.15 E-value=0.00072 Score=61.19 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHH
Q 024122 151 SVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDR 230 (272)
Q Consensus 151 a~~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~ 230 (272)
.-+.-+..|..+++||++-+-|.|-.+|.=+..|||. ||+..++.|-+...-.| -+.|+.. ++++-+.+
T Consensus 114 ~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvg---laADvGT----L~RlpkvV-- 182 (292)
T KOG1681|consen 114 RYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVG---LAADVGT----LNRLPKVV-- 182 (292)
T ss_pred HHHHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeee---hhhchhh----HhhhhHHh--
Confidence 3445667788888999999999999999999999999 99999999987766543 3334321 22222211
Q ss_pred HHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 231 MYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 231 ~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
| +...+.++.--.+-|+|.||+++|||-+|.+.
T Consensus 183 ------G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~d 215 (292)
T KOG1681|consen 183 ------G-NQSLARELAFTARKFSADEALDSGLVSRVFPD 215 (292)
T ss_pred ------c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCC
Confidence 1 11222333223467999999999999998875
No 135
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=96.79 E-value=0.011 Score=55.02 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=72.1
Q ss_pred EEcceeChhHHHHHHHHHHHHhccC---CCCCEEEEEeCCCCcHHHHH-------HHHHHHHhhC--CCeEEEEccc--c
Q 024122 109 FIGQPINSMVAQRAISQLVTLATID---EDADILMYLNCPGGSIYSVL-------AIYDCMSWIK--PKVGTVCFGV--A 174 (272)
Q Consensus 109 ~l~G~Id~~~a~~ii~~L~~l~~~d---~~~~I~L~INSPGGsV~a~~-------~I~d~I~~~~--~pV~tvv~G~--A 174 (272)
|.+|.+.+...+++...++...+++ ..-++++.++|.|+.+..+. .++..+...+ .|+++++.|- |
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc 149 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGC 149 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 4678888888899988777655411 12489999999999876543 3343333343 6999999998 8
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCC
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~ 204 (272)
+.+++++++.||. .+|.|++++.+--|.
T Consensus 150 ~GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 150 FGGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred chHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 8999999999998 999999999887774
No 136
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.63 E-value=0.012 Score=55.44 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=72.3
Q ss_pred EEcceeChhHHHHHHHHHHHHhccC---CCCCEEEEEeCCCCcHHHHH-------HHHHHHHhhC--CCeEEEEccc--c
Q 024122 109 FIGQPINSMVAQRAISQLVTLATID---EDADILMYLNCPGGSIYSVL-------AIYDCMSWIK--PKVGTVCFGV--A 174 (272)
Q Consensus 109 ~l~G~Id~~~a~~ii~~L~~l~~~d---~~~~I~L~INSPGGsV~a~~-------~I~d~I~~~~--~pV~tvv~G~--A 174 (272)
|.+|.+.+...+++...++...+.. ...++++.++|.|+.+..+. .++..+..++ .|+++++.|- |
T Consensus 79 f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc 158 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGC 158 (301)
T ss_pred ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 4688898988999988777654432 12689999999999865432 3444444444 6999999998 9
Q ss_pred chHHHHHHhcCccCcEEeccCcEEeeecCC
Q 024122 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (272)
Q Consensus 175 ASaa~lIa~ag~~g~R~a~Pna~imiHqp~ 204 (272)
+.+++++++.||. .+|.+++++++--|.
T Consensus 159 ~GG~a~~a~l~D~--iIm~~~a~iglaGP~ 186 (301)
T PRK07189 159 FGGMGIAAALCSY--LIVSEEGRLGLSGPE 186 (301)
T ss_pred cHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence 9999999999998 999999999887773
No 137
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=96.43 E-value=0.0068 Score=54.65 Aligned_cols=136 Identities=21% Similarity=0.270 Sum_probs=91.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-------CCCCcH-----------------HHHHHHHHHHHhhCCCeEEE
Q 024122 114 INSMVAQRAISQLVTLATIDEDADILMYLN-------CPGGSI-----------------YSVLAIYDCMSWIKPKVGTV 169 (272)
Q Consensus 114 Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-------SPGGsV-----------------~a~~~I~d~I~~~~~pV~tv 169 (272)
..+.++..++.++.....++...-|+|.=| |-||+- ...+.+-..|+.+++||++.
T Consensus 43 frP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~ 122 (282)
T COG0447 43 FRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAM 122 (282)
T ss_pred CCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEE
Confidence 456677888888888776655544444434 334431 13466777899999999999
Q ss_pred EccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCC-cCchhhHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHh
Q 024122 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG-GHVEDVKRQVNEAVISRHKIDRMYAAFTGQ-PIEKVQQYT 247 (272)
Q Consensus 170 v~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~-G~~~di~~~~~el~~~~~~i~~~ya~~tg~-~~e~I~~~~ 247 (272)
|.|.|..+|-.+-.-||- -++..|+.|.-..|..|.. |-.-. . .+.+++ |+ ...+|. .+
T Consensus 123 V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs-----~-------ylar~V----GqKkArEIw-fL 183 (282)
T COG0447 123 VAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGS-----S-------YLARIV----GQKKAREIW-FL 183 (282)
T ss_pred EeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccH-----H-------HHHHHh----hhhhhHHhh-hh
Confidence 999999999999999998 7888999998888876532 11100 0 111111 22 112232 22
Q ss_pred hCCceecHHHHHHcCCceeeccC
Q 024122 248 ERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 248 ~~d~~lsa~EAle~GLID~I~~~ 270 (272)
-+.++|+||++.|+|..|+..
T Consensus 184 --cR~Y~A~eal~MGlVN~Vvp~ 204 (282)
T COG0447 184 --CRQYDAEEALDMGLVNTVVPH 204 (282)
T ss_pred --hhhccHHHHHhcCceeeeccH
Confidence 356899999999999998764
No 138
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.39 E-value=0.011 Score=53.22 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHhccCCCCCEEEEEeCCCC-----c---------------HHHHHHHHHHHHhhCCCeEEEEccccch
Q 024122 117 MVAQRAISQLVTLATIDEDADILMYLNCPGG-----S---------------IYSVLAIYDCMSWIKPKVGTVCFGVAAS 176 (272)
Q Consensus 117 ~~a~~ii~~L~~l~~~d~~~~I~L~INSPGG-----s---------------V~a~~~I~d~I~~~~~pV~tvv~G~AAS 176 (272)
...+.+.+.|..++.++...-|.++=-+||= + |..-..+++.|..++.||++-++|.|-.
T Consensus 58 ~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALG 137 (291)
T KOG1679|consen 58 VFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALG 137 (291)
T ss_pred HHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcc
Confidence 3456677777788877655555555455762 1 3344577888888999999999999999
Q ss_pred HHHHHHhcCccCcEEeccCcEEeeecCCC----CCCcCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCce
Q 024122 177 QAAIILAGGEKGMRYAMPNARIMLNQPQS----GSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 252 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~Pna~imiHqp~~----g~~G~~~di~~~~~el~~~~~~i~~~ya~~tg~~~e~I~~~~~~d~~ 252 (272)
+|-=++++||. |++..++.+++-.-.. |..|+- -+ -+.+ |. ...+++.-..+.
T Consensus 138 GGLElALACDi--Rva~s~akmGLvET~laiiPGaGGtQ-RL----------pR~v--------g~--alaKELIftarv 194 (291)
T KOG1679|consen 138 GGLELALACDI--RVAASSAKMGLVETKLAIIPGAGGTQ-RL----------PRIV--------GV--ALAKELIFTARV 194 (291)
T ss_pred cchhhhhhccc--eehhhhccccccccceeeecCCCccc-hh----------HHHH--------hH--HHHHhHhhhhee
Confidence 99999999999 9999999887654322 223321 11 1111 11 112233334678
Q ss_pred ecHHHHHHcCCceeeccC
Q 024122 253 LSAAEAMEFGLIDGILET 270 (272)
Q Consensus 253 lsa~EAle~GLID~I~~~ 270 (272)
|++.||..+|||..+++.
T Consensus 195 l~g~eA~~lGlVnhvv~q 212 (291)
T KOG1679|consen 195 LNGAEAAKLGLVNHVVEQ 212 (291)
T ss_pred ccchhHHhcchHHHHHhc
Confidence 999999999999887764
No 139
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.76 E-value=0.16 Score=46.20 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=53.7
Q ss_pred cceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCc---HHHHH----------HHHHHHHhhCCCeEEEEccccchH
Q 024122 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS---IYSVL----------AIYDCMSWIKPKVGTVCFGVAASQ 177 (272)
Q Consensus 111 ~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGs---V~a~~----------~I~d~I~~~~~pV~tvv~G~AASa 177 (272)
+++|.-.-+-.+.+.+++.-.+.+..+|++.+++||-. -.+.+ .-|+.-+...-||+..+.|.|.|+
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SG 119 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSG 119 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccH
Confidence 34444333333333333322445678999999999943 33333 445555555669999999999998
Q ss_pred HHHHH-hcCccCcEEeccCcEE
Q 024122 178 AAIIL-AGGEKGMRYAMPNARI 198 (272)
Q Consensus 178 a~lIa-~ag~~g~R~a~Pna~i 198 (272)
|.+-. +-++. .++.|.+.+
T Consensus 120 aFLA~GlqA~r--l~AL~ga~i 139 (234)
T PF06833_consen 120 AFLAHGLQANR--LIALPGAMI 139 (234)
T ss_pred HHHHHHHHhcc--hhcCCCCee
Confidence 86653 44555 788885443
No 140
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=95.27 E-value=0.085 Score=47.35 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=61.6
Q ss_pred HHHHHHHHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCC-cCchhhHHHHHHHHHHHHHHHHH
Q 024122 153 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG-GHVEDVKRQVNEAVISRHKIDRM 231 (272)
Q Consensus 153 ~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~-G~~~di~~~~~el~~~~~~i~~~ 231 (272)
-.+.+.|++++.||++-+.|.|+-+|.-+.++||. .++..++.|..-.-..|.. .++ -+. +.+
T Consensus 115 ~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTP-GvA-----laR-------- 178 (287)
T KOG1682|consen 115 TDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTP-GVA-----LAR-------- 178 (287)
T ss_pred HHHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCc-chh-----Hhh--------
Confidence 35677788999999999999999999999999997 7888888875432222211 111 110 000
Q ss_pred HHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 232 YAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 232 ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
-.+.+....++--+...+++||+-.||+.++++.
T Consensus 179 -----avpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~ 212 (287)
T KOG1682|consen 179 -----AVPRKVAAYMLMTGLPITGEEALISGLVSKVVPA 212 (287)
T ss_pred -----hcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCH
Confidence 0122222222222456788899988988887764
No 141
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.80 E-value=0.12 Score=52.11 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=70.2
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhhCCCeEEEEccccchHHH
Q 024122 110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179 (272)
Q Consensus 110 l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPG----------GsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~ 179 (272)
++|.|+.+.++.-..-++..... .-+|+...|.|| |-+.-|-.|..++.....|..|++.+.+..+|+
T Consensus 336 ~~G~l~~~sa~KaArFI~~cd~~--~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKAARFIRLCDAF--NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHHHHHHHhhhcc--CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 36778888887665555443332 458999999998 556778889999999999999999999999888
Q ss_pred HHHhcCccC--cEEeccCcEEeeecCC
Q 024122 180 IILAGGEKG--MRYAMPNARIMLNQPQ 204 (272)
Q Consensus 180 lIa~ag~~g--~R~a~Pna~imiHqp~ 204 (272)
+.+++..-+ ..|+-|++++.+..|.
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~iaVMG~e 440 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIAVMGPE 440 (526)
T ss_pred eeecCccCCCceeEecCcceeeecCHH
Confidence 887665443 3566678888776664
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.54 E-value=0.25 Score=50.41 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=66.2
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH---H-------HHHHHHHHHh-h--CCCeEEEEccccch
Q 024122 110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY---S-------VLAIYDCMSW-I--KPKVGTVCFGVAAS 176 (272)
Q Consensus 110 l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~---a-------~~~I~d~I~~-~--~~pV~tvv~G~AAS 176 (272)
.+|.+.....+.+...++...+. .-+++..++|+|+.+. . .-.|+..+.. + ..|.++++.|-|++
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~~~--~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~g 218 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAAQC--RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTA 218 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 57888898999998877665443 4689999999998761 1 1134444222 3 36999999999999
Q ss_pred HHHHHHhcCccCcEEec-cCcEEeeecC
Q 024122 177 QAAIILAGGEKGMRYAM-PNARIMLNQP 203 (272)
Q Consensus 177 aa~lIa~ag~~g~R~a~-Pna~imiHqp 203 (272)
+|+++...+|. .++. +++.+.+--|
T Consensus 219 GgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 219 GGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 99999888876 5555 6788888776
No 143
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=93.29 E-value=0.52 Score=44.31 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=67.3
Q ss_pred EEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHH----H---H----HHHHHhhCCCeEEEEccccchH
Q 024122 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL----A---I----YDCMSWIKPKVGTVCFGVAASQ 177 (272)
Q Consensus 109 ~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~----~---I----~d~I~~~~~pV~tvv~G~AASa 177 (272)
|++|-+.....+.+...++.+... .-++++...|.|+.+..+. . + ....+.-..|.++++.|-++.+
T Consensus 144 f~gGSmG~v~geKi~ra~e~A~~~--rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIEYATNE--SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHc--CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 468888888999998887765543 3689999999998765443 1 1 1111123469999999988877
Q ss_pred HHHHHh-cCccCcEEeccCcEEeeecCC
Q 024122 178 AAIILA-GGEKGMRYAMPNARIMLNQPQ 204 (272)
Q Consensus 178 a~lIa~-ag~~g~R~a~Pna~imiHqp~ 204 (272)
+++.++ .||. +++.|++.+.+.-|.
T Consensus 222 ~aas~a~l~Di--iiae~~A~IgfAGPr 247 (296)
T CHL00174 222 VTASFGMLGDI--IIAEPNAYIAFAGKR 247 (296)
T ss_pred HHHHHHHcccE--EEEeCCeEEEeeCHH
Confidence 777755 5998 889999999877663
No 144
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=92.45 E-value=0.62 Score=46.93 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=69.2
Q ss_pred EEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHH-------HHHHHHH-h-hCCCeEEEEccccchHH
Q 024122 108 IFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL-------AIYDCMS-W-IKPKVGTVCFGVAASQA 178 (272)
Q Consensus 108 I~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~-------~I~d~I~-~-~~~pV~tvv~G~AASaa 178 (272)
-|++|-+.....+++...++...+. .-+++..++|.|+.+..+. .++..+. . -..|.++++.|-|..++
T Consensus 92 t~~gGS~g~~~~~K~~r~~e~A~~~--~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~ 169 (512)
T TIGR01117 92 TVMGGSLGEMHAAKIVKIMDLAMKM--GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGA 169 (512)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHc--CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHH
Confidence 3578889999999998877765443 3689999999998864332 2222222 2 23599999999999999
Q ss_pred HHHHhcCccCcEEeccC-cEEeeecCC
Q 024122 179 AIILAGGEKGMRYAMPN-ARIMLNQPQ 204 (272)
Q Consensus 179 ~lIa~ag~~g~R~a~Pn-a~imiHqp~ 204 (272)
++.++.||. .+|.++ +.+.+--|.
T Consensus 170 a~~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 170 VYSPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHHhcCc--eEEeccceEEEecChH
Confidence 999999998 999996 467776663
No 145
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=92.43 E-value=1.2 Score=41.06 Aligned_cols=97 Identities=20% Similarity=0.147 Sum_probs=60.9
Q ss_pred HHHHHHhhCCCeEEEEccccchHHHHHHhcCccCcEEeccCcEEeeecCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHH
Q 024122 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAA 234 (272)
Q Consensus 155 I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~~ya~ 234 (272)
..+++-.+++|+++.+.|-|-..|..|+--||. .++...++| |.|.... |+.-|--... .+-..
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~--V~A~Dka~F--~TPfa~l-Gq~PEG~Ss~----t~p~i------- 162 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCDY--VWASDKAWF--QTPFAKL-GQSPEGCSSV----TLPKI------- 162 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhhe--EEeccceEE--eccchhc-CCCCCcceee----eehHh-------
Confidence 567778889999999999999999988888898 788766555 6665421 2211100000 00000
Q ss_pred HhCCCHHHHHHHhhCCceecHHHHHHcCCceeeccC
Q 024122 235 FTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 270 (272)
Q Consensus 235 ~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I~~~ 270 (272)
.| .....+++=-+.-|+|+||.+.|||++|...
T Consensus 163 -mG--~~~A~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 163 -MG--SASANEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred -hc--hhhHHHHHHhCCcccHHHHHhcCchhhhcCh
Confidence 11 1111222222567999999999999998754
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=91.28 E-value=0.46 Score=47.49 Aligned_cols=91 Identities=14% Similarity=0.215 Sum_probs=66.6
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCC--cHHHH---H----HHHHHHHhh--CCCeEEEEccccchHH
Q 024122 110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG--SIYSV---L----AIYDCMSWI--KPKVGTVCFGVAASQA 178 (272)
Q Consensus 110 l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGG--sV~a~---~----~I~d~I~~~--~~pV~tvv~G~AASaa 178 (272)
++|.+.....+++...+....+. .-+++..++|.|+ .+..+ + .++..+... ..|+++++.|-|..++
T Consensus 69 ~gGs~g~~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~ 146 (493)
T PF01039_consen 69 LGGSVGEVHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGG 146 (493)
T ss_dssp GGGTBSHHHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGG
T ss_pred ecCCCCcccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccch
Confidence 57788898999998877765554 3578888999999 33222 1 233333222 4599999999999989
Q ss_pred HHHHhcCccCcEEeccC-cEEeeecCC
Q 024122 179 AIILAGGEKGMRYAMPN-ARIMLNQPQ 204 (272)
Q Consensus 179 ~lIa~ag~~g~R~a~Pn-a~imiHqp~ 204 (272)
++++..+|. .++.++ +.+.+.-|.
T Consensus 147 A~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 147 AYLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp GHHHHHSSE--EEEETTTCEEESSTHH
T ss_pred hhcccccCc--cccCccceEEEecccc
Confidence 888888888 888887 999887774
No 147
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=89.00 E-value=2.9 Score=37.01 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=62.2
Q ss_pred CcchhhccCcEEEEcc-eeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-------------
Q 024122 97 DLSSVLFRNRIIFIGQ-PINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW------------- 161 (272)
Q Consensus 97 di~s~l~~~rII~l~G-~Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~------------- 161 (272)
|-+++++.. |.||.= ..+....+.|.+.|..+...+ .+.++|.+ +.+||++..+..|...+-.
T Consensus 41 ~~~~~~~~~-igYi~i~sf~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~ 118 (211)
T cd07560 41 DPYSRYLTP-IGYIRITSFSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGK 118 (211)
T ss_pred CCcceeeCc-eEEEEEcccCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCc
Confidence 445555444 555321 134556678888888877653 67888888 6689999999888775542
Q ss_pred -----------hCCCeEEEEccccchHHHHHHhcCcc
Q 024122 162 -----------IKPKVGTVCFGVAASQAAIILAGGEK 187 (272)
Q Consensus 162 -----------~~~pV~tvv~G~AASaa~lIa~ag~~ 187 (272)
...||++.+.+..+|+|-+++.+-+.
T Consensus 119 ~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~lk~ 155 (211)
T cd07560 119 REAYASDDGGLYDGPLVVLVNGGSASASEIVAGALQD 155 (211)
T ss_pred eEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHHhh
Confidence 34588888999999999888866554
No 148
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=88.41 E-value=2.7 Score=39.60 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=60.8
Q ss_pred cEEEEcc-eeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh----------------------
Q 024122 106 RIIFIGQ-PINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW---------------------- 161 (272)
Q Consensus 106 rII~l~G-~Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~---------------------- 161 (272)
+|.||.- ..+....+.+.+.|..++.. +.+.++|.+ +.+||.+..+..+...+..
T Consensus 152 ~igYi~i~~f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~ 230 (334)
T TIGR00225 152 SVGYIRISSFSEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGR 230 (334)
T ss_pred EEEEEEEEecccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCC
Confidence 3655432 24555677888888888765 468888888 7799999999988887621
Q ss_pred --hCCCeEEEEccccchHHHHHHhcCcc
Q 024122 162 --IKPKVGTVCFGVAASQAAIILAGGEK 187 (272)
Q Consensus 162 --~~~pV~tvv~G~AASaa~lIa~ag~~ 187 (272)
...||++.+.+..||+|-+++.+-..
T Consensus 231 ~~~~~pv~vLvn~~TaSaaE~~a~~l~~ 258 (334)
T TIGR00225 231 QPYNLPLVVLVNRGSASASEIFAGALQD 258 (334)
T ss_pred ccCCCCEEEEECCCCCcHHHHHHHHHHh
Confidence 24589999999999999988876554
No 149
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=88.26 E-value=3.4 Score=36.23 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh--------------------------hCCCeEE
Q 024122 116 SMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------------IKPKVGT 168 (272)
Q Consensus 116 ~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~--------------------------~~~pV~t 168 (272)
+...+.+.+.+..+++ +.+.++|.+ +-|||.+..+..+.+.+.. ...||++
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~v 149 (224)
T cd06567 72 ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVV 149 (224)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEE
Confidence 5566777777777765 467888888 6799999999999988764 2348999
Q ss_pred EEccccchHHHHHHhcCcc
Q 024122 169 VCFGVAASQAAIILAGGEK 187 (272)
Q Consensus 169 vv~G~AASaa~lIa~ag~~ 187 (272)
.+.+..+|+|-+++.+-+.
T Consensus 150 L~~~~taSaaE~~a~~lk~ 168 (224)
T cd06567 150 LVNEGSASASEIFAGALQD 168 (224)
T ss_pred EECCCCccHHHHHHHHHHh
Confidence 9999999999888866554
No 150
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=86.87 E-value=3.9 Score=39.64 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=60.8
Q ss_pred CcEEEEcc-eeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh---------------------
Q 024122 105 NRIIFIGQ-PINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------- 161 (272)
Q Consensus 105 ~rII~l~G-~Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~--------------------- 161 (272)
++|.||.- ..+....+.+.+.|..++..+ .+.++|.+ |-|||.+..+..|.+.+..
T Consensus 194 ~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (389)
T PLN00049 194 PKIGYIKLTTFNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADG 272 (389)
T ss_pred CCEEEEEeccccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCC
Confidence 36766532 245566788888888887654 78888888 7789999999999887721
Q ss_pred -----hCCCeEEEEccccchHHHHHHhcCc
Q 024122 162 -----IKPKVGTVCFGVAASQAAIILAGGE 186 (272)
Q Consensus 162 -----~~~pV~tvv~G~AASaa~lIa~ag~ 186 (272)
...|+++.+.+..||++=+++.+=+
T Consensus 273 ~~~~~~~~PvvVLvn~~TaSasEi~a~alk 302 (389)
T PLN00049 273 SSAIATSEPLAVLVNKGTASASEILAGALK 302 (389)
T ss_pred CccccCCCCEEEEECCCCccHHHHHHHHHh
Confidence 1248899999999999988876544
No 151
>PRK11186 carboxy-terminal protease; Provisional
Probab=86.40 E-value=3.5 Score=42.99 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=59.7
Q ss_pred CcEEEEcce-eChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh---------------------
Q 024122 105 NRIIFIGQP-INSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------- 161 (272)
Q Consensus 105 ~rII~l~G~-Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~--------------------- 161 (272)
++|.||.-+ ......+.+.+.|..++.. +.+.++|.+ |-|||.+..+..|...+-.
T Consensus 353 ~kIGYI~I~sF~~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~ 431 (667)
T PRK11186 353 EKVGVLDIPGFYVGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTD 431 (667)
T ss_pred CcEEEEEecccccchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCC
Confidence 456554322 2334577888888888765 478999988 7799999999998887521
Q ss_pred ----hCCCeEEEEccccchHHHHHHhcCc
Q 024122 162 ----IKPKVGTVCFGVAASQAAIILAGGE 186 (272)
Q Consensus 162 ----~~~pV~tvv~G~AASaa~lIa~ag~ 186 (272)
...|+++.+.+..||++-+++.+-.
T Consensus 432 ~~~~~~gPlvVLVN~~SASASEIfA~alq 460 (667)
T PRK11186 432 GVVYYKGPLVVLVDRYSASASEIFAAAMQ 460 (667)
T ss_pred cccccCCCEEEEeCCCCccHHHHHHHHHH
Confidence 1348999999999999998886543
No 152
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=84.84 E-value=3.4 Score=40.03 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=68.1
Q ss_pred CcEEEEcce-----eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH-------------------HHH
Q 024122 105 NRIIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV-------------------LAI 155 (272)
Q Consensus 105 ~rII~l~G~-----Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-----SPGGsV~a~-------------------~~I 155 (272)
.|+|.|+-| +|-++...+...|..++..+..+-|+|.=+ |-||+|.+. -.+
T Consensus 48 ~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl 127 (401)
T KOG1684|consen 48 ARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSL 127 (401)
T ss_pred eeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 356666654 788899999999999998765554444434 457886533 134
Q ss_pred HHHHHhhCCCeEEEEccccchHHHHHHhcCccCcEEecc-------CcEEeeecC
Q 024122 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP-------NARIMLNQP 203 (272)
Q Consensus 156 ~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~~g~R~a~P-------na~imiHqp 203 (272)
...|-.+.+|+++...|+-..+|.=+...|.- |++.. ..-|++|.-
T Consensus 128 ~~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT~~AmPEt~IGlfPD 180 (401)
T KOG1684|consen 128 NHLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERTVFAMPETGIGLFPD 180 (401)
T ss_pred HHHHHHhcCceEEEeeceeecCCcceeeccee--EEeeccceecccccccccccC
Confidence 44566677899999999999999988887776 65544 444556654
No 153
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=84.72 E-value=4.5 Score=39.64 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=62.5
Q ss_pred EEEEcce-eChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-----------------------
Q 024122 107 IIFIGQP-INSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW----------------------- 161 (272)
Q Consensus 107 II~l~G~-Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~----------------------- 161 (272)
|.||.=+ .+....+.+..+|..|+++. .+.++|.+ |-|||.+.++..+.+....
T Consensus 205 IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~ 283 (406)
T COG0793 205 IGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE 283 (406)
T ss_pred EEEEEecccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccc
Confidence 6665432 45556677888888888875 89999999 6699999999999998772
Q ss_pred --hCCCeEEEEccccchHHHHHHhcCc
Q 024122 162 --IKPKVGTVCFGVAASQAAIILAGGE 186 (272)
Q Consensus 162 --~~~pV~tvv~G~AASaa~lIa~ag~ 186 (272)
...|+++.+.+..||++=+++-+-+
T Consensus 284 ~~~~~PlvvLvn~~SASAsEI~agalq 310 (406)
T COG0793 284 ALYDGPLVVLVNEGSASASEIFAGALQ 310 (406)
T ss_pred cCCCCCEEEEECCCCccHHHHHHHHHH
Confidence 1258999999999999998886655
No 154
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=83.36 E-value=2.2 Score=36.49 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=27.7
Q ss_pred EcceeChhHHHHHHHH---HHHHhccCCCCCEEEEEeCCCCcHH
Q 024122 110 IGQPINSMVAQRAISQ---LVTLATIDEDADILMYLNCPGGSIY 150 (272)
Q Consensus 110 l~G~Id~~~a~~ii~~---L~~l~~~d~~~~I~L~INSPGGsV~ 150 (272)
+.|.|+..-++.+.+. ++.... +.+.|+|++.||||-|.
T Consensus 105 F~Gdi~A~~v~~LReeisail~~a~--~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 105 FKGDIKASEVESLREEISAILSVAT--PEDEVLVRLESPGGMVH 146 (155)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhCC--CCCeEEEEEecCCceee
Confidence 6888888766655444 444333 45789999999999764
No 155
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=81.85 E-value=6.8 Score=35.82 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=58.4
Q ss_pred CcEEEEcc-eeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHhhC-------------------
Q 024122 105 NRIIFIGQ-PINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSWIK------------------- 163 (272)
Q Consensus 105 ~rII~l~G-~Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~~~------------------- 163 (272)
++|.||.= .......+.+.+.+..+++.+ .+.++|.+ +-|||.+..+..|.+.+..-.
T Consensus 64 ~~IGYi~i~~F~~~~~~~l~~a~~~l~~~~-~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~~~~~~~~~~~ 142 (256)
T cd07561 64 KKVGYLVYNSFTSGYDDELNQAFAEFKAQG-VTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATLEYNDKRSANN 142 (256)
T ss_pred CcEEEEEECccccchHHHHHHHHHHHHHcC-CCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEEEecCCccCCC
Confidence 45655421 133446778888888888664 78888888 679999999999988877510
Q ss_pred ------------------CCeEEEEccccchHHHHHHhcCcc
Q 024122 164 ------------------PKVGTVCFGVAASQAAIILAGGEK 187 (272)
Q Consensus 164 ------------------~pV~tvv~G~AASaa~lIa~ag~~ 187 (272)
.||++.+.+..||+|=+++.+=+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~pv~VL~~~~TASAaE~~a~~Lk~ 184 (256)
T cd07561 143 EDLLFSSKTLAGGNSLNLSKVYVLTSGSTASASELVINSLKP 184 (256)
T ss_pred ceeecccccccccCcCCcccEEEEECCCcccHHHHHHHHhhc
Confidence 267777788888888877755443
No 156
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=80.26 E-value=6.8 Score=32.20 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-----------------------------hCCCe
Q 024122 117 MVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW-----------------------------IKPKV 166 (272)
Q Consensus 117 ~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~-----------------------------~~~pV 166 (272)
...+.+.+.+.++... +.+.++|.+ +.+||+...+..+...+.. ...||
T Consensus 15 ~~~~~~~~~~~~~~~~-~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKSK-DTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHHT-TSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHHC-CCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 4556666666666653 478899999 7789999999988877652 23478
Q ss_pred EEEEccccchHHHHHHhcCcc
Q 024122 167 GTVCFGVAASQAAIILAGGEK 187 (272)
Q Consensus 167 ~tvv~G~AASaa~lIa~ag~~ 187 (272)
++.+.+.++|+|-+++.+.+.
T Consensus 94 ~vL~~~~t~Saae~fa~~lk~ 114 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASALKD 114 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHHHh
Confidence 888899999999988866554
No 157
>smart00245 TSPc tail specific protease. tail specific protease
Probab=78.96 E-value=13 Score=32.17 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=58.1
Q ss_pred CcEEEEc-ceeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh---------------------
Q 024122 105 NRIIFIG-QPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------- 161 (272)
Q Consensus 105 ~rII~l~-G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~--------------------- 161 (272)
++|-||. ...+..+.+.+.+.+.+++.. +.+.++|.+ +.+||.+..+..+.+.+..
T Consensus 28 ~~igYi~i~~f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 106 (192)
T smart00245 28 GNIGYIRIPEFSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPAN 106 (192)
T ss_pred CcEEEEEEeEEChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecC
Confidence 4565542 224454667777788887765 368888888 5599999999988887732
Q ss_pred ----hCCCeEEEEccccchHHHHHHhcCcc
Q 024122 162 ----IKPKVGTVCFGVAASQAAIILAGGEK 187 (272)
Q Consensus 162 ----~~~pV~tvv~G~AASaa~lIa~ag~~ 187 (272)
...||++.+.+..||+|-+++.+-+.
T Consensus 107 ~~~~~~~pv~vL~~~~TaSaaE~~a~~lk~ 136 (192)
T smart00245 107 LGRKYSKPLVVLVNEGTASASEIFAGALKD 136 (192)
T ss_pred CCcccCCCEEEEECCCCeeHHHHHHHHHhh
Confidence 11468888888999999888766554
No 158
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=76.04 E-value=17 Score=33.08 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=50.3
Q ss_pred hccCcEEEEcce-eChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh------------------
Q 024122 102 LFRNRIIFIGQP-INSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW------------------ 161 (272)
Q Consensus 102 l~~~rII~l~G~-Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~------------------ 161 (272)
+..++|.||.-+ ..+...+.+.+.++. ....+.++|.+ +-+||++.. .|.+.+..
T Consensus 84 ~~~~~igYi~i~~~~~~~~~~~~~~~~~---~~~~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~~p 158 (266)
T cd07562 84 LSDGRIGYVHIPDMGDDGFAEFLRDLLA---EVDKDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVTYP 158 (266)
T ss_pred hcCCcEEEEEeCCCChHHHHHHHHHHHh---cCCCceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCCCc
Confidence 334677665332 234444455554443 22267888888 557888443 44444421
Q ss_pred ---hCCCeEEEEccccchHHHHHHhcCcc
Q 024122 162 ---IKPKVGTVCFGVAASQAAIILAGGEK 187 (272)
Q Consensus 162 ---~~~pV~tvv~G~AASaa~lIa~ag~~ 187 (272)
.+.||.+.+.+.++|+|-+++.+.+.
T Consensus 159 ~~~~~~pv~vL~~~~t~SaaE~~a~~lk~ 187 (266)
T cd07562 159 SGRWRGPVVVLVNEGSASDAEIFAYGFRA 187 (266)
T ss_pred ccccCCCEEEEECCCCCchHHHHHHHHHH
Confidence 35699999999999999888866554
No 159
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=69.13 E-value=12 Score=38.12 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=64.9
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHH--------HHHHHHHHHhhC-CCeEEEEccccchHHHH
Q 024122 110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS--------VLAIYDCMSWIK-PKVGTVCFGVAASQAAI 180 (272)
Q Consensus 110 l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a--------~~~I~d~I~~~~-~pV~tvv~G~AASaa~l 180 (272)
.+|..-+..++.++.......+. ..+++...+|-|+.+.. +.-.|+..+.+. .|.+++++|-|+.+|+|
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~~--g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY 180 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIEN--GLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAY 180 (526)
T ss_pred ecccccccccchHHHHHHHHHHc--CCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccc
Confidence 46777777777777765554433 35777777888876543 445555555554 49999999999999999
Q ss_pred HHhcCccCcEEeccC-cEEeeecC
Q 024122 181 ILAGGEKGMRYAMPN-ARIMLNQP 203 (272)
Q Consensus 181 Ia~ag~~g~R~a~Pn-a~imiHqp 203 (272)
+..-+|. .+|..+ +.+.+--|
T Consensus 181 ~pal~D~--~imv~~~~~mfltGP 202 (526)
T COG4799 181 SPALTDF--VIMVRDQSYMFLTGP 202 (526)
T ss_pred cccccce--EEEEcCCccEEeeCH
Confidence 9999998 888887 66666655
No 160
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=69.04 E-value=17 Score=34.32 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=50.4
Q ss_pred EEEEcce--eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccc
Q 024122 107 IIFIGQP--INSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAA 175 (272)
Q Consensus 107 II~l~G~--Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AA 175 (272)
+|-++.+ .+- .+.+-|.+|..++..+.|.||+.+-|-.+..+..+.+..+. ++||+++..|..+
T Consensus 180 ~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 180 CVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 4557766 444 45666778888888999999999988888888888887664 7899999888765
No 161
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=68.65 E-value=22 Score=31.86 Aligned_cols=66 Identities=18% Similarity=0.025 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh---------------------------------hCC
Q 024122 119 AQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW---------------------------------IKP 164 (272)
Q Consensus 119 a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~---------------------------------~~~ 164 (272)
.+.+-+.+..++. .+.++|.+ +.+||+...+..+...+.. .+.
T Consensus 82 ~~~~~~~~~~l~~---~~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T cd07563 82 EALLDEALDKLAD---TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTK 158 (250)
T ss_pred HHHHHHHHHHhcC---CCeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCC
Confidence 3445455555543 36788887 6689999988888887751 124
Q ss_pred CeEEEEccccchHHHHHHhcCcc
Q 024122 165 KVGTVCFGVAASQAAIILAGGEK 187 (272)
Q Consensus 165 pV~tvv~G~AASaa~lIa~ag~~ 187 (272)
||++.+.+.++|+|-.++.+.+.
T Consensus 159 pv~vL~~~~T~SaaE~~a~~lk~ 181 (250)
T cd07563 159 PVYVLTSPVTFSAAEEFAYALKQ 181 (250)
T ss_pred CEEEEeCCCcCcHHHHHHHHHHh
Confidence 88888899999999888866554
No 162
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=62.73 E-value=20 Score=33.71 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=50.9
Q ss_pred EEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHH-HHHHHHHHHhhCCCeEEEEccccchHHHHHHhcCc
Q 024122 108 IFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS-VLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186 (272)
Q Consensus 108 I~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a-~~~I~d~I~~~~~pV~tvv~G~AASaa~lIa~ag~ 186 (272)
|-|+|. +-.-..|++.|+.+++++ ....++.|-=+||.-.+ +...... +..++||++++.|..| .
T Consensus 176 IGiGGD--pi~Gt~fid~L~~fe~Dp-~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta----------p 241 (293)
T COG0074 176 IGIGGD--PIPGTSFIDALEMFEADP-ETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA----------P 241 (293)
T ss_pred EEeCCC--CcCCccHHHHHHHHhcCc-cccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC----------C
Confidence 445553 222356888888888765 55667788999998653 2222333 4455899999999887 6
Q ss_pred cCcEEeccCcEE
Q 024122 187 KGMRYAMPNARI 198 (272)
Q Consensus 187 ~g~R~a~Pna~i 198 (272)
+|+|+..-.+.+
T Consensus 242 ~gkrmGhaGaiv 253 (293)
T COG0074 242 EGKRMGHAGAIV 253 (293)
T ss_pred ccchhhhhhhhh
Confidence 677776665555
No 163
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=59.78 E-value=28 Score=33.11 Aligned_cols=65 Identities=20% Similarity=0.110 Sum_probs=46.0
Q ss_pred EEEEccee-ChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccc
Q 024122 107 IIFIGQPI-NSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAA 175 (272)
Q Consensus 107 II~l~G~I-d~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AA 175 (272)
+|-+++.- .+ -.+.+-|+++++++..+.|.||+..-|-....+.+..+. ...++||.++..|..+
T Consensus 199 ~VsiGnd~~~g---~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 199 CVGIGGDPFNG---TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEeCCCCCCC---CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 45577652 22 246677788888888899999999877665566555555 3356899999988765
No 164
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=59.63 E-value=65 Score=30.28 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=62.8
Q ss_pred EEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHH----------HHHHHHHhhCCCeEEEEc-----cc
Q 024122 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL----------AIYDCMSWIKPKVGTVCF-----GV 173 (272)
Q Consensus 109 ~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~----------~I~d~I~~~~~pV~tvv~-----G~ 173 (272)
|++|-+-.-+.++|+..++++-.+ .-++++.--|.|-.+-.+. +-.+.++..+.|+++|.. |+
T Consensus 133 FmgGSmGsVvGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 133 FMGGSMGSVVGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred ccccchhHHHHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 578888888899999999986654 3577777777665554442 223344555568888873 56
Q ss_pred cchHHHHHHhcCccCcEEeccCcEEeeecCCC
Q 024122 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205 (272)
Q Consensus 174 AASaa~lIa~ag~~g~R~a~Pna~imiHqp~~ 205 (272)
-||-| +-||. .++.|.+.|++..|..
T Consensus 211 sASfA----~lGDi--~iAEP~AlIGFAGpRV 236 (294)
T COG0777 211 SASFA----MLGDI--IIAEPGALIGFAGPRV 236 (294)
T ss_pred hHhHH----hccCe--eecCcccccccCcchh
Confidence 66644 45887 8999999999888864
No 165
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=53.94 E-value=44 Score=27.75 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=33.2
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhC--CCeEEEEccc
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGV 173 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~--~pV~tvv~G~ 173 (272)
+|.++.+.+- .+.+-|.++..++..+.|.+|+.+-+- +....+.++... +||+++-.|.
T Consensus 31 ~vs~Gn~~dv----~~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 31 VVSVGNEADV----DFADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp EEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred EEEeCccccC----CHHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4556666654 345556777788788999999997443 566666766665 8999888776
No 166
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=49.72 E-value=1.1e+02 Score=23.00 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=25.0
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEE
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L 140 (272)
++.+.|+++-..+..+.+.|..+...+..+.+++
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi 48 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVL 48 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEE
Confidence 3558999999999999998887655333455665
No 167
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=48.17 E-value=63 Score=32.51 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=56.4
Q ss_pred ceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhhCCCeEEEEccccchHHHHH
Q 024122 112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 181 (272)
Q Consensus 112 G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPG----------GsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~lI 181 (272)
|-+..+++.....-++...+. .-++++..|+|| |-...+-.+.++....+.|.+|++.|-+..+.|-+
T Consensus 363 G~L~s~sa~KgarfIe~c~q~--~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m 440 (536)
T KOG0540|consen 363 GVLFSESAVKGARFIELCDQR--NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAM 440 (536)
T ss_pred cccchhhhhhhHHHHHHHHhc--CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCcccc
Confidence 556677776665555554443 457899999988 22234445666666677799999988887744431
Q ss_pred ---HhcCccCcEEeccCcEEeee
Q 024122 182 ---LAGGEKGMRYAMPNARIMLN 201 (272)
Q Consensus 182 ---a~ag~~g~R~a~Pna~imiH 201 (272)
...+|. .|+-|+++|.+.
T Consensus 441 ~sr~~~gd~--~yawP~A~Iavm 461 (536)
T KOG0540|consen 441 CSRGYSGDI--NYAWPNARIAVM 461 (536)
T ss_pred cccccCCce--eEEcccceeeec
Confidence 134555 788888888664
No 168
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=45.84 E-value=40 Score=25.63 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=25.1
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEE
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L 140 (272)
++.+.|+++-..++.+.+++..+-...+.+.++|
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 4568999999999999999877543233455665
No 169
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=43.52 E-value=70 Score=27.11 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEE
Q 024122 121 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 169 (272)
Q Consensus 121 ~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tv 169 (272)
.+++.+.....+. .. +.|| ||+-.-.+.+|.|+|+....|++=|
T Consensus 55 ~Lid~Ihea~~~~--~~--IvIN-pga~THTSvAlrDAi~av~iP~vEV 98 (146)
T COG0757 55 ELIDWIHEARGKA--GD--IVIN-PGAYTHTSVALRDAIAAVSIPVVEV 98 (146)
T ss_pred HHHHHHHHhhccC--Ce--EEEc-CccchhhHHHHHHHHHhcCCCEEEE
Confidence 4556565544321 22 5566 8999999999999999999998655
No 170
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=42.34 E-value=1.4e+02 Score=22.48 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=24.4
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEE
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~ 141 (272)
++.+.|+++-..++.|.+++..+-..+..+.+++.
T Consensus 11 ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilD 45 (100)
T cd06844 11 VVRLEGELDHHSVEQFKEELLHNITNVAGKTIVID 45 (100)
T ss_pred EEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45689999999999999988754433334555543
No 171
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=40.02 E-value=70 Score=27.16 Aligned_cols=57 Identities=18% Similarity=0.031 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCC-CCcHHHHHHHHHHHHhhC-----CCeEEEEccccch
Q 024122 120 QRAISQLVTLATIDEDADILMYLNCP-GGSIYSVLAIYDCMSWIK-----PKVGTVCFGVAAS 176 (272)
Q Consensus 120 ~~ii~~L~~l~~~d~~~~I~L~INSP-GGsV~a~~~I~d~I~~~~-----~pV~tvv~G~AAS 176 (272)
+.+.+.|+.+.+++.++.|.|.+--. |..-+.+..+...++..+ .||++++.|..+-
T Consensus 59 ~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 59 STRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp SHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 45556666666666566655544443 334567778888888765 5888888886665
No 172
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=38.23 E-value=1.4e+02 Score=24.08 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCceee
Q 024122 212 EDVKRQVNEAVISRHKIDR---MYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGI 267 (272)
Q Consensus 212 ~di~~~~~el~~~~~~i~~---~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~I 267 (272)
-|.++..+-+.+..+.|+. .+.++.|.+++++.+++++.-- -+|++.+||.|.=
T Consensus 31 ~D~qeAln~Vie~~eaFdsLPAkvRe~FgNdPeeml~~L~d~~n--yde~~algll~~e 87 (114)
T TIGR02763 31 LDYQEALNIVIEGEEAFDSLPAKVRENFGNDPEEMLSWLEDEAN--YDEVEALGLLDPE 87 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHhChhh--HHHHHHhcccccc
Confidence 3444444444444555543 4556779999999888875432 3589999999853
No 173
>PRK06091 membrane protein FdrA; Validated
Probab=36.80 E-value=85 Score=32.26 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEEccccc
Q 024122 121 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAA 175 (272)
Q Consensus 121 ~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~AA 175 (272)
.+.+.|.+|..++..+.|.+|+-=|+-.+.. .+.+.++..++||+++..|.-.
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCc
Confidence 4566677888888889999998777777774 8888888889999999988544
No 174
>PHA00099 minor capsid protein
Probab=36.64 E-value=1.5e+02 Score=24.90 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHhCCCHHHHHHHhhCCceecHHHHHHcCCc
Q 024122 212 EDVKRQVNEAVISRHKIDR---MYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLI 264 (272)
Q Consensus 212 ~di~~~~~el~~~~~~i~~---~ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLI 264 (272)
-|.+...+-+.+..+.|+. -..++.|.+++++.+++.+.. .-+||+.+||+
T Consensus 61 ~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~--NydEa~~LGl~ 114 (147)
T PHA00099 61 MDYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPE--NYDEAKALGLV 114 (147)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChh--hHHHHHhccee
Confidence 3444444444445555544 355677888999988887543 34699999998
No 175
>PLN02522 ATP citrate (pro-S)-lyase
Probab=35.49 E-value=1e+02 Score=32.06 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=43.7
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHh--hCCCeEEEEccccc
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW--IKPKVGTVCFGVAA 175 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~--~~~pV~tvv~G~AA 175 (272)
+|-+++..+. -..+.+-|.++++++..+.|.||+.=.|.+-. ...+.++. .++||++++.|..+
T Consensus 197 ~VsiGnd~~~--g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~---~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 197 GIAIGGDVFP--GSTLSDHVLRFNNIPQIKMIVVLGELGGRDEY---SLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEeCCCCCC--CCCHHHHHHHHhcCCCCCEEEEEEecCchhHH---HHHHHHHHhcCCCCEEEEeccCCC
Confidence 4557775442 12456777888888888999999885455444 33444443 56899999999876
No 176
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=33.84 E-value=28 Score=23.11 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=14.9
Q ss_pred CCceecHHHHHHcCCcee
Q 024122 249 RDRFLSAAEAMEFGLIDG 266 (272)
Q Consensus 249 ~d~~lsa~EAle~GLID~ 266 (272)
.+..|+-+||++.||||.
T Consensus 18 tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTEEEEHHHHHHTTSS-H
T ss_pred CCeEEcHHHHHHCCCcCH
Confidence 467899999999999995
No 177
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=32.53 E-value=1.9e+02 Score=20.86 Aligned_cols=78 Identities=9% Similarity=0.058 Sum_probs=47.6
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhhCC-CeEEEEccccchHHHHHHhc
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIKP-KVGTVCFGVAASQAAIILAG 184 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INS-PGGsV~a~~~I~d~I~~~~~-pV~tvv~G~AASaa~lIa~a 184 (272)
++.+.|+++...++.+.+++....... .+.+++.+.. +.=+..+...+....+.++. .+.+.+.|......-++-..
T Consensus 11 ii~l~G~l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~~ 89 (99)
T cd07043 11 VVRLSGELDAATAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLELT 89 (99)
T ss_pred EEEEeceecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 566899999999999988887765432 3555555433 22234455566666666643 45555566655555555444
Q ss_pred C
Q 024122 185 G 185 (272)
Q Consensus 185 g 185 (272)
|
T Consensus 90 g 90 (99)
T cd07043 90 G 90 (99)
T ss_pred C
Confidence 4
No 178
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=32.31 E-value=2.2e+02 Score=21.49 Aligned_cols=79 Identities=10% Similarity=0.108 Sum_probs=42.1
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEe-CCCCcHHHHHHHHHHHHhhC-CCeEEEEccccchHHHHHHhc
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN-CPGGSIYSVLAIYDCMSWIK-PKVGTVCFGVAASQAAIILAG 184 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~IN-SPGGsV~a~~~I~d~I~~~~-~pV~tvv~G~AASaa~lIa~a 184 (272)
++.+.|+++...++.+.+.+...-...+.+.+++.+. .+-=+......+.+..+..+ .-+..++.|.-....-.+-..
T Consensus 13 v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~~ 92 (109)
T cd07041 13 VLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVEL 92 (109)
T ss_pred EEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHh
Confidence 3458999999999999888765333223455666442 12122233334444444433 223444455555555444444
Q ss_pred C
Q 024122 185 G 185 (272)
Q Consensus 185 g 185 (272)
|
T Consensus 93 g 93 (109)
T cd07041 93 G 93 (109)
T ss_pred C
Confidence 3
No 179
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=29.91 E-value=2.8e+02 Score=22.51 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=36.3
Q ss_pred CCcCch---hhHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHhhCCceecHHHHHHcCCcee
Q 024122 207 SGGHVE---DVKRQVNEAVISRHKIDRM---YAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDG 266 (272)
Q Consensus 207 ~~G~~~---di~~~~~el~~~~~~i~~~---ya~~tg~~~e~I~~~~~~d~~lsa~EAle~GLID~ 266 (272)
.+|... |.++..+-+.+..+.|+.+ +.++.|-++++.-+++.+. =..+|++++||+|.
T Consensus 23 ~Ygd~s~~~DyqeAln~V~e~~eaFd~LPa~iRe~F~N~P~efl~f~~dp--~N~ee~~~Lgl~~~ 86 (114)
T PF09675_consen 23 EYGDCSSPFDYQEALNMVAEANEAFDELPAHIRERFNNDPEEFLEFLNDP--KNYEEAIKLGLLEP 86 (114)
T ss_pred cccccCCHHhHHHHHHHHHHHHHHHHHchHHHHHHhCCCHHHHHHHHhCc--cCHHHHHHhccccC
Confidence 455544 3333334444445555543 4566688888888877643 36789999999964
No 180
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=28.41 E-value=2.8e+02 Score=22.57 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=34.4
Q ss_pred CcEEEEcceeChh---HHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh
Q 024122 105 NRIIFIGQPINSM---VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI 162 (272)
Q Consensus 105 ~rII~l~G~Id~~---~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~ 162 (272)
.+|..+++.=+.. ..+++.+.+..+.. ..+.+.+..+= ||++......++.++.-
T Consensus 28 ~~i~~~gg~~d~~~gt~~~~I~~ai~~~~~--~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~ 85 (125)
T TIGR02364 28 VTIISAGGTDDGRLGTSPDKIIEAIEKADN--EADGVLIFYDL-GSAVMNAEMAVELLEDE 85 (125)
T ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhcC--CCCCEEEEEcC-CCcHhHHHHHHHHhccc
Confidence 3455555443332 34556666665432 14678999999 99998877777777643
No 181
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.19 E-value=84 Score=27.92 Aligned_cols=46 Identities=9% Similarity=0.116 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh
Q 024122 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI 162 (272)
Q Consensus 117 ~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~ 162 (272)
..++.+.++++.+..=...+.|-+|+++++|.|..+.-|-++++.=
T Consensus 29 rQs~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~g 74 (200)
T KOG3093|consen 29 RQSEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDG 74 (200)
T ss_pred HHHHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcC
Confidence 3344555555554433346889999999999999987777777764
No 182
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=28.05 E-value=1.7e+02 Score=27.29 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=40.2
Q ss_pred EEEEcceeC--hhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHh-hCCCeEEEEccccc
Q 024122 107 IIFIGQPIN--SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW-IKPKVGTVCFGVAA 175 (272)
Q Consensus 107 II~l~G~Id--~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~-~~~pV~tvv~G~AA 175 (272)
++-++.+.+ - .+.+-|.++..++..+.|.||+.+-|-... .....++. .++||+++-.|...
T Consensus 173 ~Vs~Gn~a~~dv----~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~---~~~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 173 CVGIGGDPVNGT----SFIDVLEAFEKDPETEAIVMIGEIGGSAEE---EAADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred EEEeCCCcCCCC----CHHHHHHHHhhCCCCcEEEEEEecCCchHH---HHHHHHHhcCCCCEEEEEecCCC
Confidence 455777733 3 344556677788888999999996443333 22333443 57899998888754
No 183
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=27.10 E-value=1.1e+02 Score=22.09 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=19.6
Q ss_pred HHHHHHHhCC-CHHHHHHHhhCCceecHHHHHH
Q 024122 229 DRMYAAFTGQ-PIEKVQQYTERDRFLSAAEAME 260 (272)
Q Consensus 229 ~~~ya~~tg~-~~e~I~~~~~~d~~lsa~EAle 260 (272)
.+-..+-+|. +.++|..++. +..|++.||++
T Consensus 9 VQ~iKEiv~~hse~eIya~L~-ecnMDpnea~q 40 (60)
T PF06972_consen 9 VQSIKEIVGCHSEEEIYAMLK-ECNMDPNEAVQ 40 (60)
T ss_pred HHHHHHHhcCCCHHHHHHHHH-HhCCCHHHHHH
Confidence 3444555555 7777766664 56777777765
No 184
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=26.90 E-value=1.3e+02 Score=23.60 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=26.6
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG 146 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPG 146 (272)
++.+.|++|...+..+.+.+...-.....+. +.||.-|
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~ 53 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSG 53 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCC
Confidence 5669999999999999998885443333333 5566554
No 185
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=26.21 E-value=3e+02 Score=20.98 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=48.1
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCC--------CCCEEEEEeC-CCCcHHHHHHHHHHHHhhC-CCeEEEEccccc
Q 024122 106 RIIFIGQPINSMVAQRAISQLVTLATIDE--------DADILMYLNC-PGGSIYSVLAIYDCMSWIK-PKVGTVCFGVAA 175 (272)
Q Consensus 106 rII~l~G~Id~~~a~~ii~~L~~l~~~d~--------~~~I~L~INS-PGGsV~a~~~I~d~I~~~~-~pV~tvv~G~AA 175 (272)
.|+-+.|+++...++.+.+.+..+...++ .+.++|.+.. +.=+..+...+.+..+.++ ..+..+..|..-
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35669999999999999999998877653 3566666543 3334445555555555554 344445555544
Q ss_pred hHHHHHH
Q 024122 176 SQAAIIL 182 (272)
Q Consensus 176 Saa~lIa 182 (272)
..-..+-
T Consensus 91 ~v~~~l~ 97 (117)
T PF01740_consen 91 DVRRILE 97 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 186
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.18 E-value=3e+02 Score=21.00 Aligned_cols=67 Identities=9% Similarity=0.094 Sum_probs=46.6
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhhCCCeEEEEccccchHHHHH
Q 024122 106 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 181 (272)
Q Consensus 106 rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INS-PGGsV~a~~~I~d~I~~~~~pV~tvv~G~AASaa~lI 181 (272)
++.+++..++. +.+.+.+... + .++ +-+++ .+........+.+.++.....+.+++.|..++...-.
T Consensus 30 ~v~~~d~~~~~---~~l~~~~~~~---~--pd~-V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~ 97 (121)
T PF02310_consen 30 EVDILDANVPP---EELVEALRAE---R--PDV-VGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEE 97 (121)
T ss_dssp EEEEEESSB-H---HHHHHHHHHT---T--CSE-EEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHH
T ss_pred eEEEECCCCCH---HHHHHHHhcC---C--CcE-EEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHH
Confidence 45566665544 5565655542 1 223 55666 7888999999999999988888899999887776643
No 187
>smart00250 PLEC Plectin repeat.
Probab=25.77 E-value=43 Score=21.34 Aligned_cols=18 Identities=44% Similarity=0.475 Sum_probs=15.3
Q ss_pred CceecHHHHHHcCCceee
Q 024122 250 DRFLSAAEAMEFGLIDGI 267 (272)
Q Consensus 250 d~~lsa~EAle~GLID~I 267 (272)
..-||-.||++-||||.-
T Consensus 19 ~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 19 GQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCcCHHHHHHcCCCCcc
Confidence 456899999999999963
No 188
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=25.61 E-value=2.6e+02 Score=23.17 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=31.0
Q ss_pred cCcEEEEcceeCh------hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCc--HHHHHHHHHHHH
Q 024122 104 RNRIIFIGQPINS------MVAQRAISQLVTLATIDEDADILMYLNCPGGS--IYSVLAIYDCMS 160 (272)
Q Consensus 104 ~~rII~l~G~Id~------~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGs--V~a~~~I~d~I~ 160 (272)
...+-|..=+|.+ +..+.|++.++.+ .+.-.|.+||-.|. .+.++.||++|+
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456666556655 4445565555543 23567888887765 778899999885
No 189
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=25.18 E-value=1.7e+02 Score=27.25 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=43.8
Q ss_pred ccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH--HHHHHHHH
Q 024122 103 FRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY--SVLAIYDC 158 (272)
Q Consensus 103 ~~~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~--a~~~I~d~ 158 (272)
+..++.=+.+-++......+.++|+.|+++....-.+|.|.|-+|+-- .+..++|.
T Consensus 32 ~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 32 LSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred ccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 344555577888998899999999999999888888999999998754 34455555
No 190
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=24.83 E-value=2.3e+02 Score=26.48 Aligned_cols=64 Identities=20% Similarity=0.099 Sum_probs=38.5
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHh-hCCCeEEEEccccc
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW-IKPKVGTVCFGVAA 175 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~-~~~pV~tvv~G~AA 175 (272)
++-++.+-+.+ -.+.+-|.+|..++..+.|.||+.+- |+-.. .....+.. .++||+++-.|...
T Consensus 175 ~Vs~Gn~~~~d--v~~~D~l~~l~~Dp~T~~I~lylE~~-~~~~~--~a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 175 CVGIGGDPING--TNFIDVLEAFEEDPETEAIVMIGEIG-GSAEE--EAAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred EEEeCCCcCCC--CCHHHHHHHHhhCCCCcEEEEEEecC-CcHHH--HHHHHHHHcCCCCEEEEEecCCC
Confidence 44566662200 13455567787888889999999943 32211 22223333 37899999888754
No 191
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=24.82 E-value=1.4e+02 Score=27.58 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=43.2
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEEE
Q 024122 106 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVC 170 (272)
Q Consensus 106 rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tvv 170 (272)
||+|++.-+-..--+.+.+.|..++++.+..-++..-....|...-...+++.|.....++.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc
Confidence 57787777666556666777777776654433333344443333456899999999999988874
No 192
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=24.30 E-value=1.7e+02 Score=23.77 Aligned_cols=53 Identities=15% Similarity=0.341 Sum_probs=29.1
Q ss_pred CcCchhhHHHHH-HHHHHHHHHHHHHHHHhC---------CCHHHHHHHhhCCceecHHHHHHc
Q 024122 208 GGHVEDVKRQVN-EAVISRHKIDRMYAAFTG---------QPIEKVQQYTERDRFLSAAEAMEF 261 (272)
Q Consensus 208 ~G~~~di~~~~~-el~~~~~~i~~~ya~~tg---------~~~e~I~~~~~~d~~lsa~EAle~ 261 (272)
.|+.++++.... -.-.++.+++++..+--. ...++|.+.++++ -+|++||++.
T Consensus 49 rGnlKe~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~G-eIs~eeA~~~ 111 (113)
T PF09862_consen 49 RGNLKEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKG-EISVEEALEI 111 (113)
T ss_pred cCCHHHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcC-CCCHHHHHHH
Confidence 566666654432 111245555555443221 2345666666654 5799999873
No 193
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.55 E-value=4.5e+02 Score=22.14 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=41.0
Q ss_pred CcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHhhCCCeEEEEccc
Q 024122 105 NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV 173 (272)
Q Consensus 105 ~rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~I-NSPGGsV~a~~~I~d~I~~~~~pV~tvv~G~ 173 (272)
.++.++++. +++.+.+.+.|. ...+ .+.+.- .+|--+-.+..+|.+.|+..++++..+++|.
T Consensus 49 ~~ifllG~~--~~~~~~~~~~l~---~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 49 KRIFLLGGS--EEVLEKAAANLR---RRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred CeEEEEeCC--HHHHHHHHHHHH---HHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 356667774 556666666655 3333 344443 3333477788899999999999998887764
No 194
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=23.17 E-value=1.4e+02 Score=25.29 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEE
Q 024122 121 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 169 (272)
Q Consensus 121 ~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tv 169 (272)
.+++.|..... ..+. +.|| |||-...+.+|.|+|+..+.|++=|
T Consensus 56 elId~i~~a~~--~~dg--iIIN-pga~THtSiAl~DAl~~~~~P~VEV 99 (146)
T PRK13015 56 ELIDWIHEARG--DVAG--IVIN-PGAYTHTSVAIRDALAALELPVIEV 99 (146)
T ss_pred HHHHHHHHhhh--cCCE--EEEc-chHHhhhHHHHHHHHHcCCCCEEEE
Confidence 45565655422 2334 4455 8999999999999999999998655
No 195
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=21.91 E-value=3.5e+02 Score=26.04 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=43.5
Q ss_pred EEEcceeChhHHHHHHHHHHHHh--ccC-CCCCEEEEEeCCCCcHHHH---HHHHHHHHhhCCCeEEEEccccchH
Q 024122 108 IFIGQPINSMVAQRAISQLVTLA--TID-EDADILMYLNCPGGSIYSV---LAIYDCMSWIKPKVGTVCFGVAASQ 177 (272)
Q Consensus 108 I~l~G~Id~~~a~~ii~~L~~l~--~~d-~~~~I~L~INSPGGsV~a~---~~I~d~I~~~~~pV~tvv~G~AASa 177 (272)
+-++-+.|..-++.+...|.... ..+ ..++=++.|||-+-...+. ..+...++...+++.+++.|.-++.
T Consensus 2 ~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~ 77 (414)
T TIGR01579 2 ETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQS 77 (414)
T ss_pred EeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcccc
Confidence 45777888888888888887532 111 2223367789888777664 4444445544445667777755443
No 196
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=21.49 E-value=1.6e+02 Score=28.95 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=42.1
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh--CCCeEEEEccccch
Q 024122 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI--KPKVGTVCFGVAAS 176 (272)
Q Consensus 107 II~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~--~~pV~tvv~G~AAS 176 (272)
+|-++.+.+- .+.+-|.++..++..+.|.||+.+-+ .+....+..+.. ++||+++..|....
T Consensus 180 ~vs~Gn~~d~----~~~d~l~~l~~D~~t~~I~ly~E~~~----~~~~f~~aa~~a~~~KPVv~~k~Grs~~ 243 (447)
T TIGR02717 180 FVSLGNKADI----DESDLLEYLADDPDTKVILLYLEGIK----DGRKFLKTAREISKKKPIVVLKSGTSEA 243 (447)
T ss_pred EEECCchhhC----CHHHHHHHHhhCCCCCEEEEEecCCC----CHHHHHHHHHHHcCCCCEEEEecCCChh
Confidence 4556666443 44566777878888899999999732 344555555554 58999998886543
No 197
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=21.02 E-value=1.9e+02 Score=21.36 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCceecHHH
Q 024122 228 IDRMYAAFTGQPIEKVQQYTERDRFLSAAE 257 (272)
Q Consensus 228 i~~~ya~~tg~~~e~I~~~~~~d~~lsa~E 257 (272)
+.+..++.+|.+..++.+++..+ .+|+++
T Consensus 46 ~~~~lAk~~G~t~~~l~~~~~~G-kit~~~ 74 (75)
T TIGR02675 46 ALQALAKAMGVTRGELRKMLSDG-KLTADV 74 (75)
T ss_pred HHHHHHHHhCCCHHHHHHHHHCC-CCcccc
Confidence 45678899999999999999865 466553
No 198
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.49 E-value=7.9e+02 Score=23.87 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=51.0
Q ss_pred cEEEEcceeCh-hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-----HHHHHHHHHHhhCCCeEEEEccccchHHH
Q 024122 106 RIIFIGQPINS-MVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-----SVLAIYDCMSWIKPKVGTVCFGVAASQAA 179 (272)
Q Consensus 106 rII~l~G~Id~-~~a~~ii~~L~~l~~~d~~~~I~L~INSPGGsV~-----a~~~I~d~I~~~~~pV~tvv~G~AASaa~ 179 (272)
++.++.-.+.. +.+..++++|..++..+ -++++ |-=.||++. .-..+..+|-.++.||++=+.---- =+
T Consensus 164 ~~~~~~~~vQG~~A~~~i~~al~~~~~~~--~Dvii-i~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D--~t 238 (438)
T PRK00286 164 EVIIYPTLVQGEGAAASIVAAIERANARG--EDVLI-VARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETD--FT 238 (438)
T ss_pred eEEEecCcCcCccHHHHHHHHHHHhcCCC--CCEEE-EecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCC--cc
Confidence 44444444433 35678999998876532 24443 455688865 4578889999999998755422111 12
Q ss_pred HHHhcCccCcEEeccCcE
Q 024122 180 IILAGGEKGMRYAMPNAR 197 (272)
Q Consensus 180 lIa~ag~~g~R~a~Pna~ 197 (272)
+.=..+|. |...|++-
T Consensus 239 l~D~vAd~--ra~TPtaa 254 (438)
T PRK00286 239 IADFVADL--RAPTPTAA 254 (438)
T ss_pred HHHHhhhc--cCCChHHH
Confidence 33345566 77777653
No 199
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.31 E-value=4.1e+02 Score=20.47 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=47.6
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCC-CCcHHHHHHHHHHHHhhCC-CeEEEEccccchHH--HHH
Q 024122 106 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCP-GGSIYSVLAIYDCMSWIKP-KVGTVCFGVAASQA--AII 181 (272)
Q Consensus 106 rII~l~G~Id~~~a~~ii~~L~~l~~~d~~~~I~L~INSP-GGsV~a~~~I~d~I~~~~~-pV~tvv~G~AASaa--~lI 181 (272)
++++++..... +.+++.+.. .+ +-.+-|.+. +........+.+.++.... .+..++.|.+.+.. .+.
T Consensus 29 ~V~~lg~~~~~---~~l~~~~~~---~~---pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~ 99 (119)
T cd02067 29 EVIDLGVDVPP---EEIVEAAKE---ED---ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLK 99 (119)
T ss_pred EEEECCCCCCH---HHHHHHHHH---cC---CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHH
Confidence 56777766554 456565553 22 224555554 7778888999999999866 67788888777754 344
Q ss_pred HhcCcc
Q 024122 182 LAGGEK 187 (272)
Q Consensus 182 a~ag~~ 187 (272)
..+.|.
T Consensus 100 ~~G~D~ 105 (119)
T cd02067 100 EIGVDA 105 (119)
T ss_pred HcCCeE
Confidence 455543
No 200
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=20.19 E-value=1.9e+02 Score=24.39 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCCeEEE
Q 024122 121 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 169 (272)
Q Consensus 121 ~ii~~L~~l~~~d~~~~I~L~INSPGGsV~a~~~I~d~I~~~~~pV~tv 169 (272)
.+++.|..... ..+.| .|| |||-...+.+|.|+++....|++=|
T Consensus 54 elid~I~~a~~--~~dgi--IIN-pga~THtSvAi~DAl~~~~~P~VEV 97 (140)
T cd00466 54 ELIDWIHEARD--GADGI--IIN-PGAYTHTSIALRDALAAVSIPVIEV 97 (140)
T ss_pred HHHHHHHHhhc--cCcEE--EEc-chHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45666665422 23343 355 8999999999999999999997654
No 201
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.04 E-value=86 Score=27.16 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=19.9
Q ss_pred CC-CcHHHHH------HHHHHHHhhCCCeEEEEcc
Q 024122 145 PG-GSIYSVL------AIYDCMSWIKPKVGTVCFG 172 (272)
Q Consensus 145 PG-GsV~a~~------~I~d~I~~~~~pV~tvv~G 172 (272)
|| |...+++ .+.+.++..+.||..+|.|
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG 79 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLG 79 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHH
Confidence 88 7766653 3567777777898877766
Done!