BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024123
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GZ79|TI201_ARATH Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I
PE=1 SV=1
Length = 274
Score = 356 bits (913), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/274 (66%), Positives = 215/274 (78%), Gaps = 3/274 (1%)
Query: 2 ILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGS---WS 58
++ GY+T S V +S R+ S+ ++SWG+ +
Sbjct: 1 MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60
Query: 59 SGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKP 118
S G P+ +LSA+S+ LL+GEQGSL+ T+P LP+ R++ L+PRASKDVP SFRFPPMTKKP
Sbjct: 61 SRGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKP 120
Query: 119 RWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFF 178
+WWWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAYFF
Sbjct: 121 QWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFF 180
Query: 179 VAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFG 238
VAYLG+VRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P G+YWGK GMHFWTAVAF
Sbjct: 181 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFA 240
Query: 239 FLFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
+LFTVLE IRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 YLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274
>sp|Q9ZST8|TIC20_PEA Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1
Length = 253
Score = 300 bits (768), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 154/256 (60%), Positives = 178/256 (69%), Gaps = 5/256 (1%)
Query: 17 SNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLS 76
N V Q SV P A S RS WG H + + G +SA S+ LLS
Sbjct: 3 QNGGTVSQG-SVLCYACQIPAKVAVSSIRSFWG--HSLEN-KPRGMTFTDMSATSSLLLS 58
Query: 77 GEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHE 136
G Q L+ TIP LP +S +PRA+KD FRFPPMTKKPRWWWR+L+CIPYL+P H+
Sbjct: 59 GGQNFLSRTIPVLPTLHKSSTTPRATKDSS-GFRFPPMTKKPRWWWRTLSCIPYLLPFHQ 117
Query: 137 TWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRF 196
WMYA TAYHLHPF+ F+ +TYPFL AIG LP W L+AYF +AYL +VRRKEWPHFFRF
Sbjct: 118 AWMYARTAYHLHPFIPYFQPMTYPFLMAIGTLPRWSLIAYFLIAYLTIVRRKEWPHFFRF 177
Query: 197 HVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYA 256
HV +GML+EIALQV G S W+P YWGKLGMHFWT F FLFT +ECIRCAL GMYA
Sbjct: 178 HVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFLFTTIECIRCALVGMYA 237
Query: 257 DLPFFCDAACIQIPYE 272
D+PF CDAA IQIP+E
Sbjct: 238 DVPFVCDAAYIQIPHE 253
>sp|Q9ZQZ9|TI204_ARATH Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana
GN=TIC20-IV PE=2 SV=1
Length = 284
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 117/194 (60%), Gaps = 11/194 (5%)
Query: 82 LAHTIPSLPMSRRSHLSP----RASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHET 137
A+ +P L R H P R +KD + + P + ++P WWWR+LAC+PYL+ L
Sbjct: 82 FANGLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISLQ-- 139
Query: 138 WMYAETAYHLHPFLEDFEY---LTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFF 194
++ +++ PFLE + + Y AI + P WF M Y ++ Y+ VV+ KE PH+
Sbjct: 140 --ISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYL 197
Query: 195 RFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGM 254
RFH++MGMLLE ALQV+ S + P + G+ GM++W A+ F ++ +LECIRCAL G+
Sbjct: 198 RFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGV 257
Query: 255 YADLPFFCDAACIQ 268
YA +PF DAA I
Sbjct: 258 YAQIPFMTDAASIH 271
>sp|O19916|YCF60_CYACA Tic20 family protein Ycf60 OS=Cyanidium caldarium GN=ycf60 PE=3
SV=1
Length = 205
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 118 PRWWWRSLACIPYLMPLHE-TWMYAETAYHLHP-----FLEDFEYLTYPFLEA--IGKLP 169
P R+++C+ Y +PL E + H + Y+ P+LE+ IG
Sbjct: 48 PSIMARAISCLIYFLPLLEGIAQFGIVCIDDHSWIRIIYKNTLAYIVVPYLESPLIG--- 104
Query: 170 VWFLMAYFFVAYLGVVR-RKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLG 228
F YL VR + F +FH+V +LL + V+GT T LP I + +G
Sbjct: 105 ----FCIFITLYLIFVRGIIQISKFIKFHIVQALLLYLLDSVIGTVLTSLPLEIGYSFIG 160
Query: 229 MHFW-TAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQ 268
T + F+ ++ AL+G Y+++P +AA +Q
Sbjct: 161 DRLADTLLLITFMISIYAGTD-ALKGQYSNIPLISEAAKMQ 200
>sp|P73387|YC60L_SYNY3 Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1737 PE=3 SV=1
Length = 160
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 123 RSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYL 182
R + + Y++PL + +M+ P L+ P L+ + P + F V ++
Sbjct: 12 RFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFII-FIVLFM 70
Query: 183 GVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKL------GMHFWTAVA 236
VVR HF RF+ + +L+ I L + G ++ ++ L F A+A
Sbjct: 71 AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETLYNFAFLGALA 130
Query: 237 FGFLFTVLECIRCALRGMYADLPFFCDAACIQIPY 271
GF F +++ + G YA++P DAA Q+ +
Sbjct: 131 CGF-FGIVQSV----LGRYAEIPTISDAAYSQVRF 160
>sp|O82251|TI202_ARATH Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana
GN=TIC20-II PE=2 SV=1
Length = 208
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 123 RSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYL 182
R ++ Y +P + Y + +P L +P L +P +A FF YL
Sbjct: 60 RVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVA-FFGLYL 118
Query: 183 GVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYG---------IYWGKLGMHFWT 233
GVVR + + RF+ + + L++ L V + L G + WG G+ ++
Sbjct: 119 GVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFS 178
Query: 234 AVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQI 269
+ F + + +L G +PF DAA Q+
Sbjct: 179 FMCF------VYGVVSSLLGKTPYIPFVADAAGRQL 208
>sp|Q6B923|YCF60_GRATL Tic20 family protein Ycf60 OS=Gracilaria tenuistipitata var. liui
GN=ycf60 PE=3 SV=2
Length = 204
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 133 PLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPH 192
P + +Y +T L F Y+T+P L I ++F++ Y FV R + P
Sbjct: 76 PFNVMQIYKKTLMPLVIF-----YVTHPTLAVI----IFFILYYLFV-------RNKSPI 119
Query: 193 ----FFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIR 248
F RF+V+ +LL + ++G LP G+ + + L T+ I
Sbjct: 120 PDRPFIRFNVLQSILLFLINSLLGATFRALPIEFRMSLYGLMMCNTLFWFVLSTISYSII 179
Query: 249 CALRGMYADLPFFCDAACIQI 269
++ G YA +P A IQI
Sbjct: 180 KSIEGKYAKIPVISQAVRIQI 200
>sp|Q1XDC7|YCF60_PORYE Tic20 family protein Ycf60 OS=Porphyra yezoensis GN=ycf60 PE=3 SV=1
Length = 203
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 23/184 (12%)
Query: 100 RASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPF----LEDFE 155
RA K + + + K R R ++ +PY +PL E L F L D+
Sbjct: 24 RAYKYIKLNKKINNTESKTRLSIRLVSTVPYYLPLFE---------GLQNFGQYVLPDYP 74
Query: 156 YLTYPFLEAIGKLPVWFLMAY-------FFVAYLGVVRRKE---WPHFFRFHVVMGMLLE 205
P + I + F M + FF Y +VR K RF+ + +LL
Sbjct: 75 VAAIPLYKKIILPMLIFYMNHAILGLVTFFALYYVLVRNKSPIPVHQLVRFNSMQSILLF 134
Query: 206 IALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAA 265
+ + G P LG+ + + L T+ I A++G Y+++P +A
Sbjct: 135 LVGSLFGAVFRAFPIEFRISFLGLMVCNMMFWFVLSTITYSIVKAVQGKYSNIPVISEAV 194
Query: 266 CIQI 269
IQI
Sbjct: 195 RIQI 198
>sp|Q6C8U1|CHS7_YARLI Chitin synthase export chaperone OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=CHS7 PE=3 SV=1
Length = 335
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 165 IGKLPVWFLMAYFFVAYLGVVRRKEWPHF---FRFHVVMGMLLEIALQVVGTASTWLPYG 221
IG LPV +M Y + RKE HF F F M ++++ + G+A+
Sbjct: 66 IGALPVILIMMYTVKGKYTAIGRKELFHFLSCFLFLTCMSLVVDAGVAPPGSAAYPYLVA 125
Query: 222 IYWGKLGMHFWTAVAFGFL 240
I G + W+ V FGFL
Sbjct: 126 IQNGAISGTMWSLVNFGFL 144
>sp|P51360|YCF60_PORPU Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1
Length = 203
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 39/192 (20%)
Query: 100 RASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDF-EYL- 157
RA K + + K R R ++ IPY +PL E L++F +Y+
Sbjct: 24 RAYKYITLNTNINTTESKTRLSIRLVSIIPYYLPLFEG-------------LQNFGQYVL 70
Query: 158 -TYPFLEAIGKLPVW------FLMAY----------FFVAYLGVVRRKE---WPHFFRFH 197
YP +G +P++ L+ Y FF Y +VR K RF+
Sbjct: 71 PDYP----VGAIPLYKKILLPMLIFYMNHAILGLVTFFALYYVLVRNKSPITVHQLVRFN 126
Query: 198 VVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYAD 257
+ +LL + + G P +G+ + + L T+ I A++G Y++
Sbjct: 127 SMQSILLFLVGSLFGAIFRAFPIEFRISFIGLTVCNMMFWFILSTITYSIVKAIQGKYSN 186
Query: 258 LPFFCDAACIQI 269
+P +A IQI
Sbjct: 187 IPVISEAVRIQI 198
>sp|Q5WDX9|TCYP_BACSK L-cystine uptake protein TcyP OS=Bacillus clausii (strain KSM-K16)
GN=ABC2897 PE=3 SV=1
Length = 465
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 160 PFLEAIGKLPVWFLMAYFFVAYLGV----VRRKEWPHFFRFHVVMGMLLEIALQVVGTAS 215
PFL+ G+ P + F A+LGV VRRK+ F ++ L I ++VV
Sbjct: 175 PFLDLTGERPTSAIGVVIFSAFLGVAYLGVRRKQPEAADTFKGIVNALYAIIMRVVTLIL 234
Query: 216 TWLPYGI 222
PYG+
Sbjct: 235 RLTPYGV 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,348,398
Number of Sequences: 539616
Number of extensions: 4575198
Number of successful extensions: 11765
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11751
Number of HSP's gapped (non-prelim): 17
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)