Query 024123
Match_columns 272
No_of_seqs 135 out of 163
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lic_A Vitellogenin; lipid tra 17.0 89 0.0031 19.9 2.3 22 66-87 13-34 (35)
2 3ibp_A Chromosome partition pr 8.3 1E+02 0.0034 28.7 0.7 15 254-268 210-224 (302)
3 2wmm_A Chromosome partition pr 7.7 1.1E+02 0.0039 26.0 0.7 15 254-268 129-143 (162)
4 2gpv_G Nuclear receptor corepr 6.4 1.6E+02 0.0053 17.9 0.7 11 247-257 9-19 (26)
5 3rhw_A Avermectin-sensitive gl 6.2 1.1E+03 0.037 20.7 6.6 11 157-169 213-223 (347)
6 3ixz_A Potassium-transporting 5.9 1.7E+03 0.058 23.0 8.7 87 171-257 933-1025(1034)
7 1pp9_C Cytochrome B; cytochrom 5.7 9.2E+02 0.032 22.6 5.9 59 164-225 78-136 (379)
8 3rqw_A ELIC pentameric ligand 5.6 1.3E+03 0.046 19.8 7.2 11 157-169 201-211 (322)
9 2ovm_B NCOR, progesterone rece 4.9 2.1E+02 0.0073 17.3 0.6 9 247-255 17-25 (26)
10 3lf6_A Putative phosphotransfe 4.5 75 0.0026 25.5 -2.2 11 195-205 5-15 (161)
No 1
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=17.04 E-value=89 Score=19.90 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=15.7
Q ss_pred cccccccCccccCCCCccccCC
Q 024123 66 HLSAASTPLLSGEQGSLAHTIP 87 (272)
Q Consensus 66 ~~~~~s~~~~~~~~~~~~~~~p 87 (272)
+.|..||+.-+.|+|.+|...|
T Consensus 13 distssssissseendfwqpkp 34 (35)
T 2lic_A 13 DISTSSSSISSSEENDFWQPKP 34 (35)
T ss_dssp SSCSCSSCCSTTCSCSSCCCCC
T ss_pred ccccccccccccccccccCCCC
Confidence 4555666777788888887666
No 2
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=8.28 E-value=1e+02 Score=28.73 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=9.9
Q ss_pred cccCcchhhHHHhhc
Q 024123 254 MYADLPFFCDAACIQ 268 (272)
Q Consensus 254 ~ya~IP~ISeAA~~Q 268 (272)
++|++|++|+||+.+
T Consensus 210 r~Pe~PlfGraARE~ 224 (302)
T 3ibp_A 210 RFPEVPLFGRAARES 224 (302)
T ss_dssp ECCSSCSSCHHHHHH
T ss_pred CCCCCCcccHHHHHH
Confidence 467777777777643
No 3
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Probab=7.67 E-value=1.1e+02 Score=25.98 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=10.1
Q ss_pred cccCcchhhHHHhhc
Q 024123 254 MYADLPFFCDAACIQ 268 (272)
Q Consensus 254 ~ya~IP~ISeAA~~Q 268 (272)
++|++|+++.||+.+
T Consensus 129 r~P~~PlfGraARE~ 143 (162)
T 2wmm_A 129 RFPEVPLFGRAARES 143 (162)
T ss_dssp ECCSSCSSCHHHHHH
T ss_pred cCCCcccccHHHHHH
Confidence 567777777777643
No 4
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=6.41 E-value=1.6e+02 Score=17.88 Aligned_cols=11 Identities=55% Similarity=0.733 Sum_probs=9.1
Q ss_pred HHHhhcCcccC
Q 024123 247 IRCALRGMYAD 257 (272)
Q Consensus 247 i~~Al~G~ya~ 257 (272)
|++|+.|+|-+
T Consensus 9 irkalmg~yd~ 19 (26)
T 2gpv_G 9 IRKALMGKYDQ 19 (26)
T ss_pred HHHHHccchhh
Confidence 68899999876
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=6.17 E-value=1.1e+03 Score=20.75 Aligned_cols=11 Identities=18% Similarity=0.658 Sum_probs=6.2
Q ss_pred hhhHHHHHhhccc
Q 024123 157 LTYPFLEAIGKLP 169 (272)
Q Consensus 157 ~~~Pll~~~~slP 169 (272)
+.+-++.++ +|
T Consensus 213 ~~~y~~~l~--iP 223 (347)
T 3rhw_A 213 FSFYLLQLY--IP 223 (347)
T ss_dssp SHHHHHHTH--HH
T ss_pred eeEEEEEee--hh
Confidence 455555554 57
No 6
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=5.87 E-value=1.7e+03 Score=23.03 Aligned_cols=87 Identities=14% Similarity=0.278 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceeh--h-H--HHHHHHHHHHHHHHHHHHhhchhhhhhhhHHHHHHHHHH-HHHHHHHH
Q 024123 171 WFLMAYFFVAYLGVVRRKEWPHFFR--F-H--VVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVA-FGFLFTVL 244 (272)
Q Consensus 171 ~~~liiFf~LyL~VVRN~~is~FVR--F-N--aMQAILLdI~L~l~~li~~~lP~~~g~g~lg~~~~~~vf-l~~l~~vi 244 (272)
|..++++-..+++..|..+.+-|-+ | | ..-|+++.++++++.+....+...++...+....|..++ ++.+..++
T Consensus 933 f~~lv~~q~~~~~~~r~~~~s~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~ 1012 (1034)
T 3ixz_A 933 FISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVY 1012 (1034)
T ss_pred HHHHHHHHHHHHHhhccCCCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3434444455555666655444432 1 2 233555555555444433222222222122222333322 23333445
Q ss_pred HHHHHhhcCcccC
Q 024123 245 ECIRCALRGMYAD 257 (272)
Q Consensus 245 ~ci~~Al~G~ya~ 257 (272)
.-+++.+..++++
T Consensus 1013 ~e~~K~~~r~~~~ 1025 (1034)
T 3ixz_A 1013 DEIRKLGVRCCPG 1025 (1034)
T ss_pred HHHHHHHHHhCCC
Confidence 5556666666654
No 7
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=5.66 E-value=9.2e+02 Score=22.63 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=30.2
Q ss_pred HhhccchHHHHHHHHHHHHHHHcCCCCCceehhHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 024123 164 AIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWG 225 (272)
Q Consensus 164 ~~~slP~~~~liiFf~LyL~VVRN~~is~FVRFNaMQAILLdI~L~l~~li~~~lP~~~g~g 225 (272)
+++++..++.-..|+.+|+=+-|+--...|-|-. .=+.-+++.++.....++.+.+-||
T Consensus 78 liR~~H~~gAs~ffi~~ylHi~Rglyygsy~~~~---~W~~Gv~l~ll~m~~aF~GYvLPwg 136 (379)
T 1pp9_C 78 IIRYMHANGASMFFICLYMHVGRGLYYGSYTFLE---TWNIGVILLLTVMATAFMGYVLPWG 136 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHH---HHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheecCcc---eehhhHHHHHHHHHHHheeeeccCc
Confidence 4455555665667888888888873211221111 2344444444444555544444443
No 8
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=5.65 E-value=1.3e+03 Score=19.84 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=6.4
Q ss_pred hhhHHHHHhhccc
Q 024123 157 LTYPFLEAIGKLP 169 (272)
Q Consensus 157 ~~~Pll~~~~slP 169 (272)
+.+-++.++ +|
T Consensus 201 ~~~y~~~~~--iP 211 (322)
T 3rqw_A 201 PSYYLWSFI--LP 211 (322)
T ss_dssp CHHHHHHTH--HH
T ss_pred eeeeeehHH--HH
Confidence 455666554 57
No 9
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=4.92 E-value=2.1e+02 Score=17.31 Aligned_cols=9 Identities=56% Similarity=0.774 Sum_probs=5.1
Q ss_pred HHHhhcCcc
Q 024123 247 IRCALRGMY 255 (272)
Q Consensus 247 i~~Al~G~y 255 (272)
|++|+.|+|
T Consensus 17 irkalmg~y 25 (26)
T 2ovm_B 17 IRKALMGSF 25 (26)
T ss_pred HHHHHhhcc
Confidence 455666655
No 10
>3lf6_A Putative phosphotransferase system; epitope-scaffold, immune system; 1.90A {Artificial gene} SCOP: d.112.1.1 PDB: 1xiz_A
Probab=4.52 E-value=75 Score=25.50 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=7.3
Q ss_pred hhHHHHHHHHH
Q 024123 195 RFHVVMGMLLE 205 (272)
Q Consensus 195 RFNaMQAILLd 205 (272)
.-|+||+|||+
T Consensus 5 ~~~~~~~~ll~ 15 (161)
T 3lf6_A 5 HHNAMQGIHFR 15 (161)
T ss_dssp --CHHHHCBCC
T ss_pred ccchhhceEeC
Confidence 35789998765
Done!