Query 024126
Match_columns 272
No_of_seqs 436 out of 2820
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.8E-24 3.9E-29 199.7 7.1 70 67-136 1-70 (371)
2 KOG0716 Molecular chaperone (D 99.9 2.7E-24 5.9E-29 188.6 4.1 94 66-159 27-120 (279)
3 KOG0713 Molecular chaperone (D 99.9 2.6E-23 5.6E-28 187.8 6.3 71 67-137 13-83 (336)
4 PRK14288 chaperone protein Dna 99.8 1.5E-20 3.2E-25 176.5 6.3 69 69-137 2-70 (369)
5 PRK14296 chaperone protein Dna 99.8 5E-20 1.1E-24 173.0 6.6 68 69-137 3-70 (372)
6 PRK14279 chaperone protein Dna 99.8 6.6E-20 1.4E-24 173.3 6.9 69 68-136 7-75 (392)
7 PRK14286 chaperone protein Dna 99.8 1.2E-19 2.7E-24 170.4 6.6 69 69-137 3-71 (372)
8 KOG0712 Molecular chaperone (D 99.8 2.5E-19 5.5E-24 163.6 6.8 67 68-137 2-68 (337)
9 PRK14282 chaperone protein Dna 99.8 4.7E-19 1E-23 166.4 7.0 69 69-137 3-72 (369)
10 PRK14285 chaperone protein Dna 99.8 6.5E-19 1.4E-23 165.2 6.9 69 69-137 2-70 (365)
11 PRK14297 chaperone protein Dna 99.8 7.7E-19 1.7E-23 165.6 7.1 69 69-137 3-71 (380)
12 PRK14287 chaperone protein Dna 99.8 6.9E-19 1.5E-23 165.3 6.8 68 69-137 3-70 (371)
13 PRK14294 chaperone protein Dna 99.8 7.7E-19 1.7E-23 164.8 6.7 69 68-136 2-70 (366)
14 PRK14277 chaperone protein Dna 99.8 8E-19 1.7E-23 165.7 6.8 69 69-137 4-72 (386)
15 PTZ00037 DnaJ_C chaperone prot 99.8 6.9E-19 1.5E-23 167.4 6.0 66 68-137 26-91 (421)
16 PRK14301 chaperone protein Dna 99.8 9.7E-19 2.1E-23 164.4 7.0 69 69-137 3-71 (373)
17 PRK14299 chaperone protein Dna 99.7 1.2E-18 2.7E-23 158.7 6.6 68 69-137 3-70 (291)
18 PRK14276 chaperone protein Dna 99.7 1.2E-18 2.5E-23 164.3 6.4 68 69-137 3-70 (380)
19 PF00226 DnaJ: DnaJ domain; I 99.7 1.3E-18 2.9E-23 123.2 5.0 63 71-133 1-64 (64)
20 PRK14298 chaperone protein Dna 99.7 1.4E-18 3.1E-23 163.5 6.4 68 69-137 4-71 (377)
21 PRK14283 chaperone protein Dna 99.7 1.5E-18 3.3E-23 163.4 6.5 67 69-136 4-70 (378)
22 PRK14295 chaperone protein Dna 99.7 1.8E-18 3.9E-23 163.4 6.9 66 69-134 8-73 (389)
23 PRK14284 chaperone protein Dna 99.7 1.6E-18 3.5E-23 163.9 6.5 67 70-136 1-67 (391)
24 PRK14278 chaperone protein Dna 99.7 1.9E-18 4.1E-23 162.7 6.9 66 70-136 3-68 (378)
25 PRK10767 chaperone protein Dna 99.7 2.3E-18 5E-23 161.9 7.0 68 69-136 3-70 (371)
26 PRK14291 chaperone protein Dna 99.7 2.2E-18 4.8E-23 162.5 6.3 68 69-137 2-69 (382)
27 PRK14280 chaperone protein Dna 99.7 2.3E-18 5E-23 162.1 6.3 68 69-137 3-70 (376)
28 PRK14281 chaperone protein Dna 99.7 2.7E-18 5.9E-23 162.6 6.7 68 70-137 3-70 (397)
29 KOG0691 Molecular chaperone (D 99.7 2.8E-18 6.1E-23 155.1 5.7 70 69-138 4-73 (296)
30 KOG0717 Molecular chaperone (D 99.7 4.7E-18 1E-22 158.4 4.6 71 67-137 5-76 (508)
31 PRK14289 chaperone protein Dna 99.7 9.6E-18 2.1E-22 158.5 6.7 68 69-136 4-71 (386)
32 PRK14290 chaperone protein Dna 99.7 1.2E-17 2.5E-22 156.8 6.8 68 70-137 3-71 (365)
33 TIGR02349 DnaJ_bact chaperone 99.7 2E-17 4.3E-22 154.7 6.2 66 71-137 1-66 (354)
34 PRK14300 chaperone protein Dna 99.7 2E-17 4.3E-22 155.6 6.1 67 70-137 3-69 (372)
35 PRK14292 chaperone protein Dna 99.7 2.5E-17 5.4E-22 154.9 6.8 66 70-136 2-67 (371)
36 KOG0715 Molecular chaperone (D 99.7 2.3E-17 5E-22 149.8 6.0 70 68-138 41-110 (288)
37 PRK10266 curved DNA-binding pr 99.7 2.5E-17 5.5E-22 151.1 5.9 67 69-136 3-69 (306)
38 PRK14293 chaperone protein Dna 99.7 4.3E-17 9.3E-22 153.4 6.3 68 69-137 2-69 (374)
39 smart00271 DnaJ DnaJ molecular 99.7 1.4E-16 3E-21 111.1 6.8 58 70-127 1-59 (60)
40 KOG0718 Molecular chaperone (D 99.7 4.9E-17 1.1E-21 151.8 5.7 74 66-139 5-81 (546)
41 PTZ00341 Ring-infected erythro 99.7 1.1E-16 2.3E-21 161.0 6.8 71 67-138 570-640 (1136)
42 cd06257 DnaJ DnaJ domain or J- 99.6 3.4E-16 7.5E-21 107.1 6.7 55 71-125 1-55 (55)
43 KOG0719 Molecular chaperone (D 99.6 9.1E-17 2E-21 138.4 4.3 72 68-139 12-85 (264)
44 PHA03102 Small T antigen; Revi 99.6 3.1E-16 6.8E-21 129.2 4.3 65 70-138 5-71 (153)
45 KOG0721 Molecular chaperone (D 99.6 6.5E-16 1.4E-20 132.0 6.1 73 65-137 94-166 (230)
46 COG2214 CbpA DnaJ-class molecu 99.6 3.6E-15 7.9E-20 127.9 6.1 68 68-135 4-72 (237)
47 TIGR03835 termin_org_DnaJ term 99.6 4.3E-15 9.3E-20 146.6 7.2 67 70-137 2-68 (871)
48 PRK05014 hscB co-chaperone Hsc 99.5 2.8E-14 6.1E-19 120.4 6.5 66 70-135 1-73 (171)
49 PRK01356 hscB co-chaperone Hsc 99.5 4.9E-14 1.1E-18 118.3 6.2 66 70-135 2-72 (166)
50 PRK03578 hscB co-chaperone Hsc 99.5 8.1E-14 1.8E-18 118.0 7.0 68 68-135 4-78 (176)
51 PRK00294 hscB co-chaperone Hsc 99.5 9.3E-14 2E-18 117.3 7.0 68 68-135 2-76 (173)
52 KOG0624 dsRNA-activated protei 99.4 1.5E-13 3.2E-18 125.3 6.8 68 68-135 392-462 (504)
53 PTZ00100 DnaJ chaperone protei 99.4 2.6E-13 5.7E-18 106.6 5.8 57 64-124 59-115 (116)
54 KOG0720 Molecular chaperone (D 99.4 5.1E-13 1.1E-17 125.1 5.1 68 67-135 232-299 (490)
55 COG1141 Fer Ferredoxin [Energy 99.4 4.1E-13 9E-18 95.6 3.1 59 155-214 2-68 (68)
56 PF13370 Fer4_13: 4Fe-4S singl 99.3 3.4E-13 7.3E-18 93.9 1.0 55 158-212 1-58 (58)
57 KOG0722 Molecular chaperone (D 99.3 6.6E-13 1.4E-17 116.0 2.5 68 68-136 31-98 (329)
58 PF13459 Fer4_15: 4Fe-4S singl 99.3 1.4E-12 3E-17 92.8 3.1 56 156-212 1-65 (65)
59 PRK09430 djlA Dna-J like membr 99.3 4.6E-12 9.9E-17 114.2 6.0 59 67-125 197-262 (267)
60 KOG0714 Molecular chaperone (D 99.2 4.4E-12 9.5E-17 113.7 4.2 69 69-137 2-71 (306)
61 PHA02624 large T antigen; Prov 99.2 7.2E-12 1.6E-16 122.5 5.1 60 69-132 10-71 (647)
62 KOG0550 Molecular chaperone (D 99.2 7.1E-12 1.5E-16 116.5 4.4 68 68-135 371-439 (486)
63 PRK01773 hscB co-chaperone Hsc 99.2 3.8E-11 8.3E-16 101.4 6.4 65 70-134 2-73 (173)
64 COG5269 ZUO1 Ribosome-associat 99.2 1.7E-11 3.6E-16 108.1 3.9 124 62-202 35-163 (379)
65 COG5407 SEC63 Preprotein trans 99.1 5.3E-11 1.1E-15 111.4 3.8 69 68-136 96-169 (610)
66 TIGR00714 hscB Fe-S protein as 99.0 7.8E-10 1.7E-14 92.1 6.0 55 81-135 2-61 (157)
67 KOG1150 Predicted molecular ch 98.9 2E-09 4.3E-14 91.3 5.1 68 65-132 48-116 (250)
68 KOG0723 Molecular chaperone (D 98.6 1E-07 2.2E-12 73.0 5.3 66 58-127 44-109 (112)
69 KOG1789 Endocytosis protein RM 98.4 2.1E-07 4.6E-12 94.8 5.5 59 64-125 1275-1337(2235)
70 KOG0568 Molecular chaperone (D 98.4 2.8E-07 6.2E-12 80.0 3.8 57 68-125 45-102 (342)
71 PF06902 Fer4_19: Divergent 4F 98.0 4.2E-06 9E-11 59.3 3.1 58 154-214 6-63 (64)
72 KOG3192 Mitochondrial J-type c 97.5 7.9E-05 1.7E-09 61.2 3.3 67 68-134 6-79 (168)
73 PF14697 Fer4_21: 4Fe-4S diclu 97.3 2.3E-05 4.9E-10 54.6 -2.2 53 157-212 2-59 (59)
74 COG1146 Ferredoxin [Energy pro 97.2 0.00014 3.1E-09 51.8 1.5 60 156-216 3-64 (68)
75 COG1143 NuoI Formate hydrogenl 97.2 8.4E-05 1.8E-09 62.8 -0.1 66 153-218 47-120 (172)
76 PF13187 Fer4_9: 4Fe-4S diclus 97.1 9.2E-05 2E-09 50.2 -0.4 48 162-210 1-55 (55)
77 COG1142 HycB Fe-S-cluster-cont 97.0 0.00014 3.1E-09 60.8 -0.0 69 153-221 74-147 (165)
78 PRK08348 NADH-plastoquinone ox 97.0 0.00035 7.6E-09 55.4 2.1 61 153-215 34-95 (120)
79 PRK09626 oorD 2-oxoglutarate-a 97.0 0.00021 4.6E-09 55.2 0.2 64 154-218 9-78 (103)
80 CHL00065 psaC photosystem I su 96.8 0.00031 6.6E-09 51.8 0.1 60 156-215 4-68 (81)
81 TIGR02060 aprB adenosine phosp 96.8 0.0007 1.5E-08 54.8 1.9 65 156-221 3-73 (132)
82 COG0437 HybA Fe-S-cluster-cont 96.6 0.00095 2.1E-08 57.7 1.9 67 153-221 92-164 (203)
83 PLN00071 photosystem I subunit 96.6 0.00059 1.3E-08 50.2 0.4 60 156-215 4-68 (81)
84 COG1076 DjlA DnaJ-domain-conta 96.6 0.0012 2.7E-08 55.8 2.1 54 70-123 113-173 (174)
85 PF13247 Fer4_11: 4Fe-4S diclu 96.6 0.00041 8.8E-09 53.3 -0.7 62 153-214 32-97 (98)
86 TIGR02936 fdxN_nitrog ferredox 96.6 0.00085 1.8E-08 50.2 1.0 61 153-213 13-90 (91)
87 PRK09623 vorD 2-ketoisovalerat 96.5 0.00097 2.1E-08 51.8 1.1 58 155-215 45-103 (105)
88 COG1144 Pyruvate:ferredoxin ox 96.4 0.00054 1.2E-08 51.3 -0.9 58 155-215 29-88 (91)
89 TIGR03048 PS_I_psaC photosyste 96.4 0.0012 2.6E-08 48.5 0.8 59 156-214 3-66 (80)
90 PRK13984 putative oxidoreducta 96.4 0.0012 2.7E-08 66.0 1.2 61 155-215 39-108 (604)
91 PRK07569 bidirectional hydroge 96.4 0.0099 2.1E-07 52.6 6.8 62 154-215 139-212 (234)
92 PRK02651 photosystem I subunit 96.3 0.0015 3.2E-08 47.9 0.9 57 158-214 6-67 (81)
93 PF03656 Pam16: Pam16; InterP 96.3 0.008 1.7E-07 48.3 5.1 58 66-127 54-111 (127)
94 PRK08222 hydrogenase 4 subunit 96.2 0.001 2.3E-08 56.6 -0.2 67 152-218 29-98 (181)
95 TIGR00403 ndhI NADH-plastoquin 96.2 0.0027 5.9E-08 54.2 2.3 67 153-219 54-128 (183)
96 COG1076 DjlA DnaJ-domain-conta 96.2 0.0024 5.1E-08 54.1 1.9 64 71-134 2-72 (174)
97 PRK06991 ferredoxin; Provision 96.2 0.0024 5.1E-08 57.8 1.7 60 154-216 78-138 (270)
98 COG3592 Uncharacterized conser 96.2 0.005 1.1E-07 43.6 2.9 56 155-213 17-72 (74)
99 TIGR01582 FDH-beta formate deh 96.1 0.002 4.3E-08 58.8 1.0 69 154-222 117-189 (283)
100 TIGR02494 PFLE_PFLC glycyl-rad 96.1 0.0026 5.6E-08 57.9 1.7 61 153-214 40-103 (295)
101 PRK12387 formate hydrogenlyase 96.0 0.0026 5.6E-08 54.1 1.2 67 153-219 30-99 (180)
102 PRK14028 pyruvate ferredoxin o 95.9 0.018 3.8E-07 53.1 6.3 60 155-214 241-310 (312)
103 PRK00783 DNA-directed RNA poly 95.9 0.009 2E-07 53.8 4.3 97 154-268 163-261 (263)
104 PRK09625 porD pyruvate flavodo 95.9 0.0028 6E-08 51.4 0.8 58 155-215 53-111 (133)
105 PRK09898 hypothetical protein; 95.9 0.0048 1E-07 53.6 2.2 59 155-219 148-207 (208)
106 PRK09624 porD pyuvate ferredox 95.8 0.0018 3.9E-08 50.3 -0.6 56 156-214 46-102 (105)
107 KOG3256 NADH:ubiquinone oxidor 95.8 0.002 4.3E-08 53.5 -0.4 76 139-214 89-171 (212)
108 PRK05113 electron transport co 95.8 0.0044 9.5E-08 53.3 1.6 60 154-216 107-167 (191)
109 PRK08318 dihydropyrimidine deh 95.8 0.0038 8.3E-08 59.8 1.3 61 154-216 335-401 (420)
110 KOG0431 Auxilin-like protein a 95.8 0.011 2.5E-07 57.2 4.5 46 78-123 396-448 (453)
111 TIGR02163 napH_ ferredoxin-typ 95.7 0.0067 1.4E-07 54.4 2.6 54 159-213 199-254 (255)
112 TIGR01971 NuoI NADH-quinone ox 95.7 0.0024 5.2E-08 50.5 -0.3 59 161-219 43-108 (122)
113 TIGR00402 napF ferredoxin-type 95.7 0.0026 5.7E-08 48.9 -0.1 59 158-217 31-90 (101)
114 PRK05888 NADH dehydrogenase su 95.7 0.0051 1.1E-07 51.4 1.5 62 155-216 47-120 (164)
115 PRK09477 napH quinol dehydroge 95.6 0.0073 1.6E-07 54.6 2.2 58 158-215 205-264 (271)
116 TIGR02179 PorD_KorD 2-oxoacid: 95.5 0.004 8.6E-08 45.2 0.3 57 156-215 20-77 (78)
117 CHL00014 ndhI NADH dehydrogena 95.5 0.0054 1.2E-07 51.5 0.9 66 154-219 52-125 (167)
118 TIGR01944 rnfB electron transp 95.3 0.0091 2E-07 50.1 1.7 57 154-213 106-163 (165)
119 PF12797 Fer4_2: 4Fe-4S bindin 95.1 0.0053 1.2E-07 34.0 -0.1 20 155-174 2-21 (22)
120 TIGR03149 cyt_nit_nrfC cytochr 95.1 0.011 2.5E-07 52.0 1.8 64 155-218 119-187 (225)
121 PRK14993 tetrathionate reducta 95.1 0.0086 1.9E-07 53.4 1.0 64 154-219 123-192 (244)
122 COG1145 NapF Ferredoxin [Energ 94.9 0.013 2.8E-07 43.9 1.3 60 157-216 25-86 (99)
123 PRK10882 hydrogenase 2 protein 94.7 0.0091 2E-07 55.5 0.2 66 154-219 136-211 (328)
124 TIGR02951 DMSO_dmsB DMSO reduc 94.7 0.018 3.9E-07 47.8 1.9 62 155-218 89-156 (161)
125 PRK10330 formate dehydrogenase 94.6 0.01 2.3E-07 50.3 0.3 69 155-223 81-165 (181)
126 TIGR02512 Fe_only_hydrog hydro 94.6 0.011 2.3E-07 56.0 0.3 58 156-213 2-70 (374)
127 TIGR03224 benzo_boxA benzoyl-C 94.5 0.018 4E-07 55.1 1.8 54 155-212 4-58 (411)
128 PRK08493 NADH dehydrogenase su 94.5 0.0092 2E-07 61.8 -0.4 62 154-215 134-226 (819)
129 PF13237 Fer4_10: 4Fe-4S diclu 94.5 0.0097 2.1E-07 39.7 -0.2 49 156-206 2-52 (52)
130 PF12837 Fer4_6: 4Fe-4S bindin 94.4 0.0064 1.4E-07 34.5 -1.0 20 156-175 2-21 (24)
131 COG3383 Uncharacterized anaero 94.4 0.03 6.6E-07 56.7 3.0 113 84-211 81-210 (978)
132 TIGR02700 flavo_MJ0208 archaeo 94.4 0.0098 2.1E-07 52.7 -0.4 56 156-215 143-199 (234)
133 PTZ00305 NADH:ubiquinone oxido 94.0 0.057 1.2E-06 49.2 3.8 71 155-225 206-285 (297)
134 PRK08764 ferredoxin; Provision 94.0 0.021 4.5E-07 46.3 0.7 53 157-212 81-134 (135)
135 cd07030 RNAP_D D subunit of Ar 93.8 0.067 1.5E-06 48.0 3.8 87 161-264 169-257 (259)
136 PRK12769 putative oxidoreducta 93.7 0.018 4E-07 58.2 0.0 67 155-221 79-153 (654)
137 PRK06273 ferredoxin; Provision 93.7 0.011 2.4E-07 49.7 -1.3 56 156-212 44-110 (165)
138 PRK10194 ferredoxin-type prote 93.7 0.017 3.8E-07 48.1 -0.2 55 159-214 32-87 (163)
139 PRK09129 NADH dehydrogenase su 93.6 0.035 7.6E-07 57.4 1.9 61 154-214 137-205 (776)
140 TIGR03149 cyt_nit_nrfC cytochr 93.6 0.0072 1.6E-07 53.2 -2.8 62 153-214 38-115 (225)
141 PRK08166 NADH dehydrogenase su 93.5 0.1 2.2E-06 54.6 5.1 61 154-214 142-210 (847)
142 TIGR02745 ccoG_rdxA_fixG cytoc 93.3 0.074 1.6E-06 51.4 3.5 46 160-214 230-275 (434)
143 TIGR01973 NuoG NADH-quinone ox 93.2 0.069 1.5E-06 53.6 3.2 60 155-214 136-203 (603)
144 PRK07860 NADH dehydrogenase su 92.8 0.14 3E-06 53.3 4.8 60 155-214 144-211 (797)
145 PRK12809 putative oxidoreducta 92.5 0.049 1.1E-06 55.1 1.0 66 155-222 79-146 (639)
146 PF12838 Fer4_7: 4Fe-4S diclus 92.1 0.015 3.3E-07 38.8 -2.2 48 162-209 1-52 (52)
147 TIGR01660 narH nitrate reducta 92.0 0.12 2.7E-06 49.8 2.9 59 154-214 174-235 (492)
148 TIGR03478 DMSO_red_II_bet DMSO 92.0 0.026 5.7E-07 52.0 -1.6 63 155-217 156-222 (321)
149 PRK07118 ferredoxin; Validated 91.9 0.062 1.3E-06 49.0 0.8 61 154-214 161-234 (280)
150 PRK07118 ferredoxin; Validated 91.7 0.1 2.2E-06 47.5 2.0 56 158-217 210-266 (280)
151 TIGR02912 sulfite_red_C sulfit 91.5 0.068 1.5E-06 49.3 0.6 56 155-214 163-222 (314)
152 PF00037 Fer4: 4Fe-4S binding 91.3 0.028 6.1E-07 31.7 -1.3 19 157-175 2-20 (24)
153 PRK09476 napG quinol dehydroge 91.3 0.045 9.7E-07 49.2 -0.8 54 161-214 59-120 (254)
154 COG2878 Predicted NADH:ubiquin 91.3 0.035 7.6E-07 47.0 -1.4 62 153-216 107-168 (198)
155 TIGR03336 IOR_alpha indolepyru 90.9 0.15 3.2E-06 51.3 2.3 51 154-210 543-595 (595)
156 TIGR02176 pyruv_ox_red pyruvat 90.5 0.12 2.5E-06 55.9 1.3 61 156-216 678-764 (1165)
157 PRK13795 hypothetical protein; 90.3 0.091 2E-06 53.2 0.3 55 156-212 576-631 (636)
158 TIGR03287 methan_mark_16 putat 89.9 0.29 6.4E-06 46.5 3.3 56 154-215 295-352 (391)
159 TIGR01660 narH nitrate reducta 89.8 0.077 1.7E-06 51.2 -0.6 58 154-213 207-270 (492)
160 PRK09130 NADH dehydrogenase su 89.5 0.088 1.9E-06 53.8 -0.5 61 154-214 138-206 (687)
161 PRK10194 ferredoxin-type prote 88.9 0.18 4E-06 41.9 1.1 51 163-214 106-159 (163)
162 PRK12771 putative glutamate sy 88.7 0.21 4.5E-06 49.7 1.5 56 158-215 501-563 (564)
163 COG1034 NuoG NADH dehydrogenas 88.3 0.17 3.6E-06 51.6 0.5 71 158-229 141-219 (693)
164 TIGR03294 FrhG coenzyme F420 h 88.2 0.18 3.8E-06 44.6 0.5 53 156-212 169-222 (228)
165 TIGR03315 Se_ygfK putative sel 88.2 0.24 5.1E-06 52.7 1.5 79 159-239 879-965 (1012)
166 TIGR00397 mauM_napG MauM/NapG 87.0 0.13 2.8E-06 44.9 -1.0 52 161-212 53-112 (213)
167 PF12800 Fer4_4: 4Fe-4S bindin 87.0 0.39 8.5E-06 24.7 1.2 15 161-175 2-16 (17)
168 COG1148 HdrA Heterodisulfide r 85.4 0.39 8.4E-06 46.9 1.2 60 156-222 556-616 (622)
169 PF13446 RPT: A repeated domai 84.9 1.7 3.7E-05 30.0 4.0 27 70-96 5-31 (62)
170 PF14697 Fer4_21: 4Fe-4S diclu 84.3 0.7 1.5E-05 31.9 1.8 19 156-174 34-52 (59)
171 PRK10330 formate dehydrogenase 84.2 0.24 5.2E-06 41.9 -0.7 51 162-215 57-109 (181)
172 TIGR03478 DMSO_red_II_bet DMSO 83.9 1.1 2.4E-05 41.5 3.4 61 153-215 121-184 (321)
173 PRK15449 ferredoxin-like prote 83.1 0.5 1.1E-05 36.0 0.7 24 153-176 53-76 (95)
174 COG1148 HdrA Heterodisulfide r 82.8 0.52 1.1E-05 46.1 0.9 66 155-221 219-299 (622)
175 PF11833 DUF3353: Protein of u 82.5 3.2 6.9E-05 35.8 5.5 39 79-125 1-39 (194)
176 PRK13029 2-oxoacid ferredoxin 82.2 0.44 9.5E-06 51.2 0.1 54 153-207 649-705 (1186)
177 COG1149 MinD superfamily P-loo 81.7 0.39 8.4E-06 43.5 -0.4 58 155-215 63-121 (284)
178 KOG0724 Zuotin and related mol 80.5 1.9 4.2E-05 39.9 3.8 55 81-135 3-61 (335)
179 PF14687 DUF4460: Domain of un 80.2 4.6 9.9E-05 31.7 5.2 46 81-126 5-54 (112)
180 COG4231 Indolepyruvate ferredo 79.6 0.85 1.8E-05 45.7 1.1 58 155-215 571-630 (640)
181 TIGR00397 mauM_napG MauM/NapG 79.0 0.88 1.9E-05 39.7 0.9 60 156-215 126-199 (213)
182 PRK12769 putative oxidoreducta 78.7 0.36 7.8E-06 48.9 -1.8 52 160-215 53-107 (654)
183 PRK09193 indolepyruvate ferred 78.7 0.63 1.4E-05 50.1 -0.1 54 153-207 635-691 (1165)
184 cd01916 ACS_1 Acetyl-CoA synth 78.1 4.6 9.9E-05 41.6 5.8 52 158-209 362-419 (731)
185 PRK14993 tetrathionate reducta 76.5 1.3 2.8E-05 39.5 1.3 53 160-215 97-152 (244)
186 PRK09326 F420H2 dehydrogenase 76.3 0.76 1.6E-05 42.9 -0.3 55 156-210 7-70 (341)
187 TIGR01582 FDH-beta formate deh 75.6 1.5 3.3E-05 40.0 1.6 56 157-215 87-146 (283)
188 COG2768 Uncharacterized Fe-S c 75.4 1.9 4.1E-05 39.7 2.0 59 153-215 185-245 (354)
189 PRK09853 putative selenate red 75.0 1.8 3.9E-05 46.2 2.0 69 156-227 881-960 (1019)
190 COG1144 Pyruvate:ferredoxin ox 74.9 1.1 2.3E-05 33.8 0.3 22 158-179 63-85 (91)
191 PRK13030 2-oxoacid ferredoxin 74.0 0.99 2.1E-05 48.7 -0.1 54 153-207 621-677 (1159)
192 PRK12814 putative NADPH-depend 73.7 0.98 2.1E-05 45.9 -0.2 42 155-210 610-651 (652)
193 PRK09476 napG quinol dehydroge 72.9 0.89 1.9E-05 40.8 -0.7 57 157-214 133-207 (254)
194 PRK09898 hypothetical protein; 72.6 1.7 3.7E-05 37.6 1.1 57 156-214 116-175 (208)
195 PF13746 Fer4_18: 4Fe-4S diclu 69.8 1.9 4E-05 30.7 0.5 21 159-179 48-68 (69)
196 TIGR02951 DMSO_dmsB DMSO reduc 67.4 2.5 5.5E-05 34.9 0.9 56 158-215 59-117 (161)
197 COG4231 Indolepyruvate ferredo 66.5 2.4 5.3E-05 42.5 0.8 26 153-178 600-625 (640)
198 COG1143 NuoI Formate hydrogenl 65.7 3.1 6.8E-05 35.2 1.2 25 152-176 86-110 (172)
199 PRK13409 putative ATPase RIL; 65.6 2.9 6.3E-05 42.0 1.1 21 154-174 42-62 (590)
200 COG1453 Predicted oxidoreducta 64.0 11 0.00024 35.6 4.6 85 84-181 280-371 (391)
201 KOG3442 Uncharacterized conser 63.8 12 0.00025 29.9 3.9 39 67-105 56-94 (132)
202 TIGR00314 cdhA CO dehydrogenas 63.6 6.9 0.00015 40.6 3.4 53 156-208 394-452 (784)
203 KOG3256 NADH:ubiquinone oxidor 61.6 4.6 9.9E-05 33.9 1.4 31 153-183 142-173 (212)
204 COG1149 MinD superfamily P-loo 60.9 4.7 0.0001 36.6 1.5 23 154-176 92-114 (284)
205 PF12798 Fer4_3: 4Fe-4S bindin 59.6 1.9 4.1E-05 21.5 -0.8 12 163-174 1-12 (15)
206 TIGR00273 iron-sulfur cluster- 59.5 5.4 0.00012 38.6 1.7 52 157-208 289-358 (432)
207 COG2221 DsrA Dissimilatory sul 59.5 3.4 7.3E-05 38.2 0.3 14 67-80 64-77 (317)
208 PRK05035 electron transport co 58.8 1.6 3.5E-05 44.7 -2.1 49 159-208 368-424 (695)
209 PF13484 Fer4_16: 4Fe-4S doubl 58.8 4.4 9.5E-05 28.0 0.7 18 198-215 5-22 (67)
210 COG1146 Ferredoxin [Energy pro 58.2 4.5 9.8E-05 28.3 0.7 24 153-176 33-56 (68)
211 COG1245 Predicted ATPase, RNas 57.4 3.9 8.4E-05 40.0 0.3 18 157-174 46-63 (591)
212 TIGR02936 fdxN_nitrog ferredox 56.1 4 8.8E-05 30.0 0.2 19 157-175 66-84 (91)
213 TIGR00403 ndhI NADH-plastoquin 55.6 5.5 0.00012 33.9 1.0 52 156-211 97-151 (183)
214 COG1245 Predicted ATPase, RNas 54.7 5.4 0.00012 39.0 0.8 58 157-216 7-73 (591)
215 PRK12809 putative oxidoreducta 53.0 7.1 0.00015 39.6 1.4 54 158-215 51-107 (639)
216 PRK10882 hydrogenase 2 protein 51.1 6.5 0.00014 36.7 0.7 53 159-213 108-163 (328)
217 TIGR02066 dsrB sulfite reducta 50.1 6.2 0.00013 37.0 0.4 22 154-175 207-228 (341)
218 PRK15449 ferredoxin-like prote 48.8 19 0.00042 27.4 2.9 16 197-212 35-50 (95)
219 CHL00014 ndhI NADH dehydrogena 48.7 8.7 0.00019 32.1 1.1 27 156-182 94-121 (167)
220 TIGR01971 NuoI NADH-quinone ox 48.6 8.8 0.00019 29.9 1.0 26 157-182 78-104 (122)
221 PRK08348 NADH-plastoquinone ox 47.3 7.7 0.00017 30.4 0.5 27 156-182 68-95 (120)
222 PRK05888 NADH dehydrogenase su 45.8 11 0.00025 31.1 1.4 26 157-182 93-119 (164)
223 TIGR02066 dsrB sulfite reducta 44.2 8.1 0.00017 36.2 0.2 47 163-211 183-232 (341)
224 COG5552 Uncharacterized conser 43.8 89 0.0019 22.7 5.4 29 70-98 3-31 (88)
225 PRK08222 hydrogenase 4 subunit 42.2 15 0.00032 31.1 1.5 28 157-184 69-97 (181)
226 PRK00941 acetyl-CoA decarbonyl 41.2 9.1 0.0002 39.7 0.1 54 156-209 399-458 (781)
227 PRK12387 formate hydrogenlyase 41.2 14 0.0003 31.2 1.2 26 157-182 69-95 (180)
228 PRK06273 ferredoxin; Provision 39.7 14 0.00029 31.0 0.9 21 156-176 86-106 (165)
229 PRK09625 porD pyruvate flavodo 39.7 7.9 0.00017 31.1 -0.5 20 157-176 85-104 (133)
230 PRK09624 porD pyuvate ferredox 39.0 11 0.00024 29.0 0.2 20 156-175 76-95 (105)
231 COG1035 FrhB Coenzyme F420-red 38.7 14 0.00031 34.5 0.9 47 158-207 2-48 (332)
232 TIGR02912 sulfite_red_C sulfit 38.1 12 0.00025 34.5 0.3 22 155-176 195-216 (314)
233 TIGR02176 pyruv_ox_red pyruvat 37.5 13 0.00027 40.6 0.4 21 156-176 734-754 (1165)
234 COG2221 DsrA Dissimilatory sul 36.9 9.8 0.00021 35.2 -0.4 15 200-214 179-193 (317)
235 PF07709 SRR: Seven Residue Re 36.5 23 0.00049 17.1 1.0 13 112-124 2-14 (14)
236 TIGR02064 dsrA sulfite reducta 36.2 21 0.00046 34.3 1.7 26 155-180 266-291 (402)
237 COG3383 Uncharacterized anaero 35.5 16 0.00034 37.9 0.8 24 157-180 188-211 (978)
238 PRK06991 ferredoxin; Provision 35.4 12 0.00025 34.0 -0.2 20 156-175 110-129 (270)
239 PRK08318 dihydropyrimidine deh 35.3 12 0.00027 35.7 -0.0 25 156-180 372-398 (420)
240 TIGR00276 iron-sulfur cluster 35.2 33 0.00072 31.2 2.7 16 196-211 162-177 (282)
241 TIGR00402 napF ferredoxin-type 34.9 23 0.0005 26.8 1.4 20 157-176 62-81 (101)
242 TIGR03294 FrhG coenzyme F420 h 34.6 9.6 0.00021 33.6 -0.9 27 156-182 198-224 (228)
243 PRK09853 putative selenate red 34.4 15 0.00033 39.4 0.5 20 156-175 921-940 (1019)
244 COG0479 FrdB Succinate dehydro 33.0 15 0.00032 32.6 0.1 16 161-176 142-157 (234)
245 PRK14028 pyruvate ferredoxin o 32.9 18 0.0004 33.1 0.7 18 158-175 286-303 (312)
246 COG1600 Uncharacterized Fe-S p 32.0 47 0.001 31.1 3.2 25 193-217 185-209 (337)
247 TIGR02494 PFLE_PFLC glycyl-rad 31.3 17 0.00036 32.8 0.1 21 155-175 76-96 (295)
248 KOG3960 Myogenic helix-loop-he 29.8 42 0.0009 30.1 2.3 21 110-130 127-152 (284)
249 COG2878 Predicted NADH:ubiquin 29.7 16 0.00034 31.3 -0.3 50 157-215 141-191 (198)
250 PRK09477 napH quinol dehydroge 29.5 17 0.00038 32.7 -0.1 23 158-180 239-262 (271)
251 cd07030 RNAP_D D subunit of Ar 29.5 37 0.00081 30.3 2.1 26 157-182 195-221 (259)
252 PF13183 Fer4_8: 4Fe-4S diclus 29.4 7.1 0.00015 25.9 -2.0 16 161-176 3-18 (57)
253 PRK07570 succinate dehydrogena 28.7 26 0.00057 31.4 0.9 18 159-176 155-172 (250)
254 PRK10076 pyruvate formate lyas 28.5 25 0.00054 30.6 0.7 28 202-231 4-31 (213)
255 TIGR02910 sulfite_red_A sulfit 27.2 29 0.00064 32.4 1.0 23 160-182 219-243 (334)
256 PRK09326 F420H2 dehydrogenase 26.6 29 0.00064 32.3 0.9 20 158-177 50-69 (341)
257 PRK15055 anaerobic sulfite red 26.4 30 0.00064 32.6 0.9 16 162-177 227-242 (344)
258 TIGR03290 CoB_CoM_SS_C CoB--Co 26.4 32 0.00068 27.8 0.9 14 162-175 3-16 (144)
259 PF12434 Malate_DH: Malate deh 26.4 77 0.0017 18.4 2.2 17 84-100 10-26 (28)
260 TIGR02163 napH_ ferredoxin-typ 25.6 21 0.00045 31.9 -0.3 20 156-175 229-248 (255)
261 COG3195 Uncharacterized protei 25.1 1.5E+02 0.0032 25.0 4.6 43 79-121 41-117 (176)
262 COG1152 CdhA CO dehydrogenase/ 25.0 32 0.00069 34.6 0.8 44 161-208 400-453 (772)
263 PRK13552 frdB fumarate reducta 24.9 28 0.00061 30.9 0.4 23 160-183 148-170 (239)
264 PRK12576 succinate dehydrogena 23.9 36 0.00079 30.9 0.9 18 159-176 150-167 (279)
265 KOG0063 RNAse L inhibitor, ABC 23.8 27 0.00059 34.1 0.1 19 156-174 45-63 (592)
266 TIGR01945 rnfC electron transp 23.6 31 0.00068 33.3 0.5 19 158-176 360-378 (435)
267 COG2768 Uncharacterized Fe-S c 23.3 27 0.00059 32.3 0.0 22 154-175 214-235 (354)
268 TIGR02910 sulfite_red_A sulfit 23.2 34 0.00074 32.0 0.7 22 159-180 299-320 (334)
269 COG1139 Uncharacterized conser 23.0 27 0.00058 33.8 -0.1 22 160-181 307-328 (459)
270 COG2879 Uncharacterized small 23.0 1.4E+02 0.0031 20.9 3.5 27 90-118 27-53 (65)
271 PRK15055 anaerobic sulfite red 22.5 37 0.0008 31.9 0.7 22 159-180 305-326 (344)
272 TIGR02486 RDH reductive dehalo 22.3 48 0.001 30.7 1.4 22 195-216 207-228 (314)
273 TIGR00384 dhsB succinate dehyd 22.2 36 0.00078 29.6 0.5 18 159-176 136-153 (220)
274 PRK13409 putative ATPase RIL; 22.1 39 0.00085 34.0 0.9 58 157-216 6-72 (590)
275 PF10041 DUF2277: Uncharacteri 21.8 3.3E+02 0.0071 19.9 6.6 36 70-105 3-38 (78)
276 PF03820 Mtc: Tricarboxylate c 21.2 1.9E+02 0.0041 26.8 5.1 52 80-131 46-123 (308)
277 COG1140 NarY Nitrate reductase 20.5 37 0.0008 32.4 0.3 24 157-180 10-33 (513)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-24 Score=199.74 Aligned_cols=70 Identities=44% Similarity=0.657 Sum_probs=67.0
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
+..+|||+||||+++||.+|||+|||+|+++||||+|+.+++++++|++|++||+|||||++|+.||++|
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG 70 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFG 70 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccC
Confidence 3578999999999999999999999999999999999987999999999999999999999999999875
No 2
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.7e-24 Score=188.61 Aligned_cols=94 Identities=45% Similarity=0.591 Sum_probs=83.3
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccccccccCCC
Q 024126 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNP 145 (272)
Q Consensus 66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~~~~~~~ 145 (272)
.....|+|+||||+++|+.++||++||+|+++||||+++++|++.++|++||+||+||+||.+|..||++|+++....+.
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~ 106 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQ 106 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHh
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred CCCCCCCCCccccC
Q 024126 146 FLDDSCPKDHVFVD 159 (272)
Q Consensus 146 ~~~~~~~~~~v~vD 159 (272)
|.+...+...++.+
T Consensus 107 fg~d~~~~~~v~~~ 120 (279)
T KOG0716|consen 107 FGEDSKIIYFVFSS 120 (279)
T ss_pred hcccCcceEEEecc
Confidence 76665554444443
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.6e-23 Score=187.83 Aligned_cols=71 Identities=38% Similarity=0.584 Sum_probs=68.4
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...+|||+||||+.+|+..|||+|||||+++||||+|+++|.+++.|++|+.||+|||||++|+.||.+|.
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999874
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=1.5e-20 Score=176.47 Aligned_cols=69 Identities=35% Similarity=0.520 Sum_probs=65.3
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++||.+|||+|||+|+++||||+++.+++++++|++|++||+||+||.+|+.||++|.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 469999999999999999999999999999999998767889999999999999999999999999864
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5e-20 Score=173.03 Aligned_cols=68 Identities=37% Similarity=0.579 Sum_probs=64.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||++|+.||++|.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 4699999999999999999999999999999999975 6789999999999999999999999999763
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.6e-20 Score=173.30 Aligned_cols=69 Identities=39% Similarity=0.634 Sum_probs=65.6
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..+|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||++|+.||++|
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 357999999999999999999999999999999999877888999999999999999999999999985
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.2e-19 Score=170.42 Aligned_cols=69 Identities=32% Similarity=0.525 Sum_probs=65.4
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 469999999999999999999999999999999998777889999999999999999999999999863
No 8
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.5e-19 Score=163.61 Aligned_cols=67 Identities=39% Similarity=0.591 Sum_probs=63.4
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..+.||+||||+++|+.+|||+|||+|+++||||||++ +.++|++|.+||+|||||++|..||++|.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~ 68 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGE 68 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence 35689999999999999999999999999999999988 78999999999999999999999999864
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.7e-19 Score=166.42 Aligned_cols=69 Identities=41% Similarity=0.638 Sum_probs=64.3
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.+ .+++++|++|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 47999999999999999999999999999999999764 5688999999999999999999999999763
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.5e-19 Score=165.18 Aligned_cols=69 Identities=35% Similarity=0.525 Sum_probs=65.2
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||+||+||.+|..||.++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 369999999999999999999999999999999998778889999999999999999999999999763
No 11
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.7e-19 Score=165.56 Aligned_cols=69 Identities=39% Similarity=0.597 Sum_probs=65.3
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 469999999999999999999999999999999998777889999999999999999999999999863
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.9e-19 Score=165.35 Aligned_cols=68 Identities=34% Similarity=0.621 Sum_probs=63.9
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 4699999999999999999999999999999999975 6788999999999999999999999999863
No 13
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.7e-19 Score=164.80 Aligned_cols=69 Identities=39% Similarity=0.639 Sum_probs=65.4
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
...|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||++|
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 357999999999999999999999999999999999877788999999999999999999999999986
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8e-19 Score=165.73 Aligned_cols=69 Identities=45% Similarity=0.672 Sum_probs=65.3
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.+|.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 469999999999999999999999999999999998777889999999999999999999999999763
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.75 E-value=6.9e-19 Score=167.37 Aligned_cols=66 Identities=41% Similarity=0.572 Sum_probs=61.2
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...|||+||||+++|+.+|||+|||+|+++||||++++ .++|++|++||+||+||.+|+.||.+|.
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 35699999999999999999999999999999999854 4799999999999999999999999764
No 16
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=9.7e-19 Score=164.44 Aligned_cols=69 Identities=39% Similarity=0.582 Sum_probs=65.3
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.++||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||.++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 479999999999999999999999999999999998777888999999999999999999999999753
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=158.68 Aligned_cols=68 Identities=40% Similarity=0.667 Sum_probs=64.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||.++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 4799999999999999999999999999999999974 6788999999999999999999999999764
No 18
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=164.32 Aligned_cols=68 Identities=37% Similarity=0.640 Sum_probs=63.9
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 4699999999999999999999999999999999975 6788999999999999999999999999763
No 19
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.75 E-value=1.3e-18 Score=123.16 Aligned_cols=63 Identities=48% Similarity=0.712 Sum_probs=59.5
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhc
Q 024126 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYD 133 (272)
Q Consensus 71 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~YD 133 (272)
|||+||||+++++.++||++|+++++++|||++..+. .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988755 57899999999999999999999998
No 20
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.4e-18 Score=163.51 Aligned_cols=68 Identities=43% Similarity=0.636 Sum_probs=63.7
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||++|.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 4699999999999999999999999999999999975 6788999999999999999999999999763
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.5e-18 Score=163.41 Aligned_cols=67 Identities=40% Similarity=0.593 Sum_probs=63.8
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||++|
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 5799999999999999999999999999999999985 678999999999999999999999999976
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.8e-18 Score=163.41 Aligned_cols=66 Identities=44% Similarity=0.638 Sum_probs=63.4
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 579999999999999999999999999999999998777789999999999999999999999998
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.6e-18 Score=163.92 Aligned_cols=67 Identities=40% Similarity=0.603 Sum_probs=64.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.|||+||||+++|+.+|||+|||+|+++||||++++++.+++.|++|++||+||+|+.+|+.||+++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 4899999999999999999999999999999999987888999999999999999999999999875
No 24
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.9e-18 Score=162.73 Aligned_cols=66 Identities=36% Similarity=0.554 Sum_probs=63.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||.+|
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 699999999999999999999999999999999984 778899999999999999999999999976
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.3e-18 Score=161.91 Aligned_cols=68 Identities=41% Similarity=0.623 Sum_probs=64.7
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++++.+++.|++|++||++|+|+.+|..||.++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 46999999999999999999999999999999999877778899999999999999999999999875
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.2e-18 Score=162.51 Aligned_cols=68 Identities=44% Similarity=0.723 Sum_probs=63.8
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.++||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||.++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999986 6788999999999999999999999998753
No 27
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=2.3e-18 Score=162.10 Aligned_cols=68 Identities=38% Similarity=0.585 Sum_probs=63.8
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|+.||.+|.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 3699999999999999999999999999999999875 6688999999999999999999999999863
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=2.7e-18 Score=162.62 Aligned_cols=68 Identities=38% Similarity=0.569 Sum_probs=64.6
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 69999999999999999999999999999999998777788999999999999999999999999753
No 29
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.8e-18 Score=155.09 Aligned_cols=70 Identities=39% Similarity=0.593 Sum_probs=67.4
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
..|||+||||+.+++..+|++|||..+++||||+|+++|.+.+.|+.|.+||+||+|+.+|..||.++..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 5799999999999999999999999999999999999999999999999999999999999999998653
No 30
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.7e-18 Score=158.45 Aligned_cols=71 Identities=38% Similarity=0.531 Sum_probs=65.7
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...+.||+||||..+|+..+||++||+|+++||||++++. .++++.|+.|+.||+|||||..|++||.+..
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 3567999999999999999999999999999999998774 4689999999999999999999999998754
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=9.6e-18 Score=158.45 Aligned_cols=68 Identities=41% Similarity=0.562 Sum_probs=65.0
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||.++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G 71 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG 71 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 47999999999999999999999999999999999887889999999999999999999999999975
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=156.81 Aligned_cols=68 Identities=41% Similarity=0.621 Sum_probs=63.8
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.+|||+|||+|+++||||+++.+. ++.+.|++|++||+||+|+.+|..||.+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 69999999999999999999999999999999998654 688999999999999999999999999763
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.69 E-value=2e-17 Score=154.70 Aligned_cols=66 Identities=47% Similarity=0.695 Sum_probs=62.1
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 71 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
|||+||||+++|+.++||+|||+|+++||||+++ ++++++.|++|++||+||+|+.+|..||.++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 7999999999999999999999999999999997 36688999999999999999999999999753
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2e-17 Score=155.59 Aligned_cols=67 Identities=34% Similarity=0.565 Sum_probs=62.9
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.+|||+|||+|+++||||+++. +.+++.|++|++||++|+|+.+|..||.+|.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 699999999999999999999999999999999874 5678899999999999999999999999763
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.5e-17 Score=154.89 Aligned_cols=66 Identities=38% Similarity=0.560 Sum_probs=62.9
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.|||+||||+++|+.++||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||.+|
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 599999999999999999999999999999999975 678899999999999999999999999975
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.3e-17 Score=149.76 Aligned_cols=70 Identities=37% Similarity=0.513 Sum_probs=65.0
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
...|||+||||+++|+..|||+||++|+|+||||.+.+ .++.+.|++|.+||+||+|+++|..||.++..
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 33499999999999999999999999999999999998 48999999999999999999999999987653
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.68 E-value=2.5e-17 Score=151.10 Aligned_cols=67 Identities=34% Similarity=0.616 Sum_probs=63.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++++.+|||+|||+|+++||||+++. +.+++.|++|++||++|+||.+|+.||.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 3699999999999999999999999999999999875 578999999999999999999999999875
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=4.3e-17 Score=153.44 Aligned_cols=68 Identities=38% Similarity=0.670 Sum_probs=63.4
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.++||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||.++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 3699999999999999999999999999999999875 6688999999999999999999999998763
No 39
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.67 E-value=1.4e-16 Score=111.14 Aligned_cols=58 Identities=43% Similarity=0.622 Sum_probs=54.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHhcCcc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-DPETTNFCMFINEVYAVLSDPV 127 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~~~~~i~~Ay~vLsd~~ 127 (272)
.|||+||||+++++.++||++|+++++++|||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999986 4678899999999999999985
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.9e-17 Score=151.84 Aligned_cols=74 Identities=36% Similarity=0.486 Sum_probs=66.3
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcCccccchhccccccc
Q 024126 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (272)
Q Consensus 66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~ 139 (272)
+....|||.+|+|+++|+.+|||+|||++++.|||||..+. ..+++.|+.|.+|||||+||++|+.||.+|...
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 34566999999999999999999999999999999998752 348899999999999999999999999987543
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.66 E-value=1.1e-16 Score=161.01 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=65.7
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
....+||+||||+++|+..+||+|||+|+++||||+++++ .+.+.|+.|++||+|||||.+|+.||.+|..
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 4568999999999999999999999999999999999874 6788999999999999999999999998653
No 42
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.65 E-value=3.4e-16 Score=107.14 Aligned_cols=55 Identities=53% Similarity=0.788 Sum_probs=51.7
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024126 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 71 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd 125 (272)
|||+||||+++++.++||++|+++++++|||++++...+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999998755678999999999999986
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.1e-17 Score=138.40 Aligned_cols=72 Identities=38% Similarity=0.520 Sum_probs=66.0
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhcCccccchhccccccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSG--DDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~ 139 (272)
...|+|+||||..+|+..+|++||++|++++|||+++ ...++++.|++|+.||+||+|.++|+.||+.|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 3459999999999999999999999999999999994 44578999999999999999999999999987765
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.62 E-value=3.1e-16 Score=129.23 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=59.8
Q ss_pred CCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126 70 DDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 70 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
+.+|+||||+++| |.++||+|||++++++|||++++ .+.|++||+||++|+|+.+|..||.++..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 4689999999999 99999999999999999999765 56889999999999999999999998653
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.5e-16 Score=131.99 Aligned_cols=73 Identities=29% Similarity=0.418 Sum_probs=66.8
Q ss_pred CCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 65 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
......|+|+||||+++++..|||+|||+|++++||||++...+.++.|..|++||+.|+|+..|..|..+|.
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 4456789999999999999999999999999999999998755678899999999999999999999999864
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.6e-15 Score=127.92 Aligned_cols=68 Identities=44% Similarity=0.671 Sum_probs=64.5
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHhcCccccchhccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE-TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~-~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
...+||+||||+++|+.++||+|||++++++|||+++.++. +.+.|..|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45799999999999999999999999999999999998775 889999999999999999999999985
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.56 E-value=4.3e-15 Score=146.60 Aligned_cols=67 Identities=40% Similarity=0.615 Sum_probs=63.1
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.++||+|||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 599999999999999999999999999999999887 6778899999999999999999999999753
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=2.8e-14 Score=120.40 Aligned_cols=66 Identities=24% Similarity=0.434 Sum_probs=58.1
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024126 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 70 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
.|||+||||++. ++..+||++||++++++|||+..+.+. +.+.+..||+||++|+||.+|+.|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999996 688999999999999999999765432 456889999999999999999999864
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=4.9e-14 Score=118.32 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=57.6
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHhcCccccchhccc
Q 024126 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 70 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~---~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
.|||++|||++. ++..+|+++|+++++++|||++.+..+ +.+.+..||+||+||+||.+|+.|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999986 789999999999999999999876332 234578999999999999999999874
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=8.1e-14 Score=118.02 Aligned_cols=68 Identities=25% Similarity=0.425 Sum_probs=58.7
Q ss_pred CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHH-----HHHHHHHHHHHHhcCccccchhccc
Q 024126 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPETT-----NFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~-----~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
...|||+||||++. ++..+|+++||++++++|||+....++.+ +.+..||+||++|+||.+|+.|+..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 34799999999985 68999999999999999999987654433 3458999999999999999999963
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=9.3e-14 Score=117.27 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=60.3
Q ss_pred CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024126 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
...|||++|||++. .+..+|+++||++++++|||+..+.++ +.+.+..||+||+||+||.+|+.|+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 46799999999987 678999999999999999999876443 456789999999999999999999974
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.44 E-value=1.5e-13 Score=125.26 Aligned_cols=68 Identities=32% Similarity=0.472 Sum_probs=62.7
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcCccccchhccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
..+|||.||||.++|+..||.+|||+++.++|||-..+.. .++++|..|..|-+||+||++|+.||..
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 5689999999999999999999999999999999988744 3788999999999999999999999974
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.42 E-value=2.6e-13 Score=106.57 Aligned_cols=57 Identities=28% Similarity=0.395 Sum_probs=49.9
Q ss_pred CCCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhc
Q 024126 64 STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (272)
Q Consensus 64 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLs 124 (272)
...+...++|+||||+++++.+|||++||+|++++|||++++ .+.+++|++||++|.
T Consensus 59 ~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred cCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 334556799999999999999999999999999999999644 567889999999995
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.1e-13 Score=125.08 Aligned_cols=68 Identities=28% Similarity=0.369 Sum_probs=64.2
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
....|+|.+|||+.+++.++||+.||+++...|||||- .+.+++.|+.|+.||++|+|+.+|..||..
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 34789999999999999999999999999999999999 488999999999999999999999999964
No 55
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=99.35 E-value=4.1e-13 Score=95.64 Aligned_cols=59 Identities=39% Similarity=0.725 Sum_probs=49.3
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccC--------CCCHHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--------CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q--------~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|+..|||||.|...+|++|.++++ |.+.+... .++.+.+++|+.+||++||+|.+
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~~ 68 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVEE 68 (68)
T ss_pred EEEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEecC
Confidence 4678999999999999999999999998 87755322 23347899999999999999853
No 56
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=99.32 E-value=3.4e-13 Score=93.89 Aligned_cols=55 Identities=42% Similarity=0.733 Sum_probs=40.8
Q ss_pred cCcccccccCcccCCCCcceeecccccceEEccCC---CCHHHHHHHHHhCccccccc
Q 024126 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQC---GINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~---g~~e~i~~Av~~CP~~aI~~ 212 (272)
||...||+||.|..++|++|.++++.|.+.++.|. .+.+.+++|+.+||++||+|
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 57788999999999999999999986777777773 23568999999999999985
No 57
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=6.6e-13 Score=115.99 Aligned_cols=68 Identities=34% Similarity=0.535 Sum_probs=62.8
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..+|.|+||||.++++..+|.+|||+|++++|||++++ ++..+.|..|..||++|.|...|..||-..
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 45699999999999999999999999999999999998 566789999999999999999999999643
No 58
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=99.30 E-value=1.4e-12 Score=92.82 Aligned_cols=56 Identities=46% Similarity=0.825 Sum_probs=48.8
Q ss_pred cccCcccccccCcccCCCCcceeecccccceEEccC---------CCCHHHHHHHHHhCccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q---------~g~~e~i~~Av~~CP~~aI~~ 212 (272)
|++|+..|+|||.|...+|++|.++++ |.+.++.. ..+.+.+++|++.||++||+|
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 568999999999999999999999988 88766642 345689999999999999986
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.28 E-value=4.6e-12 Score=114.16 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=52.2
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHHHHHhcC
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD---D----PETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~----~~~~~~~~~i~~Ay~vLsd 125 (272)
....++|+||||++++|.++||++||+|+++||||+..+ + +.++++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999999999643 1 2478899999999999985
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.4e-12 Score=113.72 Aligned_cols=69 Identities=38% Similarity=0.563 Sum_probs=62.2
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||.||||.++|+.++||+||+++++++|||+++.. ..+...|.+|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999998774 2345578999999999999999999999875
No 61
>PHA02624 large T antigen; Provisional
Probab=99.23 E-value=7.2e-12 Score=122.53 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=56.1
Q ss_pred cCCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchh
Q 024126 69 ADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~Y 132 (272)
.+++|++|||+++| +.++||+|||++++++|||++++ ++.|++||+||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 45899999999999 99999999999999999999754 67899999999999999999998
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.1e-12 Score=116.48 Aligned_cols=68 Identities=32% Similarity=0.557 Sum_probs=64.2
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
+..|||.|||+..+++..+||+|||++++.+|||++... .+++..|+++-+||.+|+||.+|..||..
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 578999999999999999999999999999999999876 67889999999999999999999999974
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.18 E-value=3.8e-11 Score=101.41 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=56.9
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhcc
Q 024126 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 70 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
.|||++|||++. .+..++++.|+++.+++|||+....++ +.+....||+||.+|+||.+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 699999999986 899999999999999999999866432 34466889999999999999999954
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-11 Score=108.12 Aligned_cols=124 Identities=26% Similarity=0.348 Sum_probs=90.4
Q ss_pred CCCCCCCcCCcccccCcCC---CCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 62 SASTDAIADDYYAVLGLLP---DATPEQIKKAYYNCMKACHPDLS--GDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 62 ~~~~~~~~~d~Y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPD~~--~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
....+|...|+|.+|||+. .+++.+|.++.++.+.+||||+. +++-...++|..|+.||+||+|+.+|..||..
T Consensus 35 ~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~- 113 (379)
T COG5269 35 EDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN- 113 (379)
T ss_pred hhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc-
Confidence 3455678899999999994 68999999999999999999996 23345788999999999999999999999984
Q ss_pred ccccccCCCCCCCCCCCCccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHH
Q 024126 137 GYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAI 202 (272)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av 202 (272)
+++...+...++.+.... .+...+|+-+..|.....++..|..+....-|
T Consensus 114 ---------df~advppp~~~t~~~Ff-------e~w~pvFe~earFSkKqPvPsLg~~dss~keV 163 (379)
T COG5269 114 ---------DFDADVPPPRIYTPDEFF-------EVWEPVFEREARFSKKQPVPSLGPSDSSLKEV 163 (379)
T ss_pred ---------ccccCCCCccCCCchhHH-------HHHHHHHHhhhhccccCCCCCCCCchhHHHHH
Confidence 222333334444433332 44556777777777776666666555433333
No 65
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.10 E-value=5.3e-11 Score=111.37 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=62.5
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-----DPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~-----~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..-|+|||||++.+++..+||++||+|+.+|||||.+. ..+-++.+.+|++||..|+|...|..|-.+|
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 45699999999999999999999999999999999876 2356788999999999999999999998774
No 66
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.98 E-value=7.8e-10 Score=92.14 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcCccccchhccc
Q 024126 81 DATPEQIKKAYYNCMKACHPDLSGDDP-----ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 81 ~a~~~~Ik~ayr~l~~~~HPD~~~~~~-----~~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
+.+..+|+++|+++++++|||+..+.. .+.+.+..||+||++|+||.+|+.|+..
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 357899999999999999999965432 2567889999999999999999999975
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2e-09 Score=91.26 Aligned_cols=68 Identities=25% Similarity=0.349 Sum_probs=60.9
Q ss_pred CCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchh
Q 024126 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVY 132 (272)
Q Consensus 65 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~Y 132 (272)
+..-..|+|+||.|.++.+.++||+.||+|++..|||+|+++ +-+...|-.|.+||..|-|+..|..-
T Consensus 48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 345678999999999999999999999999999999999998 45788999999999999999866543
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1e-07 Score=73.05 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=55.7
Q ss_pred ccccCCCCCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCcc
Q 024126 58 TAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV 127 (272)
Q Consensus 58 ~~~~~~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~ 127 (272)
.....+.+.+.....-.||||.+.++.+.||+|+|+++...|||+.++ | -.-.+||||+++|....
T Consensus 44 ~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 44 FYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGTS 109 (112)
T ss_pred hhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhccc
Confidence 334466777888899999999999999999999999999999999988 3 23368999999997643
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.1e-07 Score=94.81 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=50.2
Q ss_pred CCCCCcCCcccccCcCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024126 64 STDAIADDYYAVLGLLPD----ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 64 ~~~~~~~d~Y~iLgv~~~----a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd 125 (272)
+..+...+.|+||.|+-+ -..++||++|++|+.+||||||+. ..++|..+|+||+.|..
T Consensus 1275 P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLSS 1337 (2235)
T ss_pred CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHHH
Confidence 444566789999999843 356899999999999999999965 78999999999999983
No 70
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.8e-07 Score=79.98 Aligned_cols=57 Identities=21% Similarity=0.443 Sum_probs=50.5
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-HhcC
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA-VLSD 125 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~-vLsd 125 (272)
.-..+|.||||..+++.++++.+|.+|++++|||.+.+ ....+.|.+|.+||. ||+.
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999999998766 456788999999998 7764
No 71
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=98.03 E-value=4.2e-06 Score=59.26 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=48.2
Q ss_pred CccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
-.+..|...|++-|.|...+|++|..+++ |-. .....+.+.+.++++.||.+||.+.+
T Consensus 6 i~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v--~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 6 ITVTWDRERCIHAGFCVRGAPEVFDQDDE-PWV--SPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred EEEEECcCcccchhhhhcCCCCcccCCCC-CcC--CcCccCHHHHHHHHHcCCccCcEEee
Confidence 34677889999999999999999999886 433 33356779999999999999998764
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=7.9e-05 Score=61.15 Aligned_cols=67 Identities=24% Similarity=0.479 Sum_probs=54.7
Q ss_pred CcCCcccccCcCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhcCccccchhcc
Q 024126 68 IADDYYAVLGLLP--DATPEQIKKAYYNCMKACHPDLSGDD-----PETTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 68 ~~~d~Y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPD~~~~~-----~~~~~~~~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
...+||.++|... ..+++.++.-|....++.|||+.+.. ..+.+...+||+||.+|.||-.|+.|=.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4568999998664 56778888899999999999985431 2366778999999999999999999954
No 73
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.27 E-value=2.3e-05 Score=54.58 Aligned_cols=53 Identities=28% Similarity=0.581 Sum_probs=29.4
Q ss_pred ccCcccccccCcccCCCCc----ceeecccccceEEccCCCCHHHHHHHHHhCcc-ccccc
Q 024126 157 FVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHR 212 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~----vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~-~aI~~ 212 (272)
.+|+.+|||||.|...+|. .+.++++ +... +. .....-....+..||| +||++
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~-~~~~-v~-~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEG-KKVP-VN-PDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTT-TSSE-CE--TT--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccChhhHHhHcCccceeeEEecCC-eeEE-ec-cccCcCcCcccccCCCccCCCC
Confidence 4688999999999999994 3444443 2222 22 2334455578899998 99974
No 74
>COG1146 Ferredoxin [Energy production and conversion]
Probab=97.23 E-value=0.00014 Score=51.80 Aligned_cols=60 Identities=30% Similarity=0.471 Sum_probs=44.4
Q ss_pred cccCcccccccCcccCCCC-cceeeccc-ccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEED-FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d-~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
+.+|...|+||+.|..++| ++|.+.++ .+...+++. .+.-.....+..||++||.+....
T Consensus 3 ~~Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~-e~C~~C~~C~~~CP~~aI~~~~~~ 64 (68)
T COG1146 3 IVIDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARP-EECIDCGLCELACPVGAIKVDILR 64 (68)
T ss_pred eEECchhcCCCChheeccChhhEEeccccCcceeEecc-ccCccchhhhhhCCcceEEEeccc
Confidence 3578888999999999999 77888764 244444443 333347789999999999976654
No 75
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.18 E-value=8.4e-05 Score=62.77 Aligned_cols=66 Identities=27% Similarity=0.541 Sum_probs=46.0
Q ss_pred CCccccCcccccccCcccCCCC-cceeeccc----ccceEEcc-C--CCCHHHHHHHHHhCcccccccccchhh
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEED----FGRARVYN-Q--CGINEFVQQAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d----~g~a~v~~-q--~g~~e~i~~Av~~CP~~aI~~~~~~~l 218 (272)
.+...++...||||+.|..+|| +...|+.+ .|..+... + .|-.--+.-+++.|||+||.....-++
T Consensus 47 RG~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e~ 120 (172)
T COG1143 47 RGRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFEL 120 (172)
T ss_pred cceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCCcceee
Confidence 4556678888999999999999 55666532 13322221 1 555567779999999999997665433
No 76
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=97.12 E-value=9.2e-05 Score=50.17 Aligned_cols=48 Identities=29% Similarity=0.666 Sum_probs=29.2
Q ss_pred cccccCcccCCCC-cceeecccccceEEccCCC------CHHHHHHHHHhCccccc
Q 024126 162 SCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCG------INEFVQQAIESCPVDCI 210 (272)
Q Consensus 162 ~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g------~~e~i~~Av~~CP~~aI 210 (272)
+||+|+.|..++| .++.++.. +......... ........++.||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~-~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDED-GGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETT-TTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCc-cccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 4999999999999 55666654 3333333221 34456689999999998
No 77
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=97.05 E-value=0.00014 Score=60.82 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=46.3
Q ss_pred CCccccCcccccccCcccCCCC-cceeecccc----cceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDF----GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~----g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l 221 (272)
.+.+.||+.+|||||.|..+|| ..+.|...- +.+..-+.-.+.+.--..+.+||++|+..++...+..+
T Consensus 74 ~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~~~~~~~ 147 (165)
T COG1142 74 DGAVQVDEEKCIGCKLCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVGPACVEACPTEALELVDEIVLERL 147 (165)
T ss_pred CCceEEchhhccCcchhhhcCCcceEEEEeecCcchhhhhhcccccCccCCCceeeeCCHHHhhcccHHHhhhh
Confidence 5678899999999999999999 445555420 11212222222222267899999999999998774433
No 78
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.03 E-value=0.00035 Score=55.39 Aligned_cols=61 Identities=23% Similarity=0.561 Sum_probs=43.9
Q ss_pred CCccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...+.+|...|++|+.|..+||. .+.+.++.+. ..+. .+....+..+++.||++||.+...
T Consensus 34 ~g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~-~~i~-~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 34 RGKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRK-VALW-TGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred cceEEECcccCcCcccHHHHCCccceEccccccc-eEec-CCcCcChhhhHHhCCcCcEEeccc
Confidence 35677899999999999999994 4555443122 2222 344566789999999999998764
No 79
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.96 E-value=0.00021 Score=55.20 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=44.2
Q ss_pred CccccCcccccccCcccCCCCc-ceeeccccc----ce-EEccCCCCHHHHHHHHHhCcccccccccchhh
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFG----RA-RVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g----~a-~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l 218 (272)
..+.+|...|++|+.|..+||. .|.+.++.. .. .+++ ......+..++..||++||.+....+.
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~-~~~C~~C~~C~~~CP~~AI~~~~~~~~ 78 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVH-PESCIGCRECELHCPDFAIYVADRKEF 78 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhccccccccccCceeeEeC-CccCCCcCcchhhCChhhEEEecccce
Confidence 4566789999999999999994 676654311 11 1222 223345678999999999999876543
No 80
>CHL00065 psaC photosystem I subunit VII
Probab=96.82 E-value=0.00031 Score=51.77 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=39.5
Q ss_pred cccCcccccccCcccCCCC-cceeeccccc---ceE-EccCCCCHHHHHHHHHhCcccccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG---RAR-VYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g---~a~-v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..++...|++|+.|..++| +.+.++++.+ ... .....+.......++..||++||.+...
T Consensus 4 ~~~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 68 (81)
T CHL00065 4 SVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred ccCccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEE
Confidence 3456678999999999999 6666654311 111 1111233345678999999999997654
No 81
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.78 E-value=0.0007 Score=54.82 Aligned_cols=65 Identities=20% Similarity=0.425 Sum_probs=46.8
Q ss_pred cccCcccccccC-----cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024126 156 VFVDEFSCIGCK-----NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 156 v~vDe~~Cigcg-----~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l 221 (272)
+++|+..|++|+ .|..+||. .+.++++...+..+. ......+..++..||.+||.+....++..+
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id-~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~ 73 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIE-PDMCWECYSCVKACPQGAIDVRGYADFAPL 73 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecC-chhCccHHHHHHhCCcCceEEECccccccc
Confidence 468899999999 99999994 566665312332332 233446789999999999999877766544
No 82
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.64 E-value=0.00095 Score=57.72 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=46.9
Q ss_pred CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhhhhH
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~~l 221 (272)
.+-|.+|...||||+.|...|| ..-.++.+.+.+..-.- -.+.+. ..+++||++|+.+.+.+|++..
T Consensus 92 dGiV~vd~d~CIGC~yCi~ACPyga~~~~~~~~~~~KCt~--C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~~ 164 (203)
T COG0437 92 DGIVLVDKDLCIGCGYCIAACPYGAPQFNPDKGVVDKCTF--CVDRVAVGKLPACVEACPTGALIFGDIDDPKSK 164 (203)
T ss_pred CCEEEecCCcccCchHHHhhCCCCCceeCcccCcccccCc--chhhHhcCCCCcccccCCcccccccchhhcchh
Confidence 4568899999999999999999 44445554343222211 122222 6899999999999888877654
No 83
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.62 E-value=0.00059 Score=50.17 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=39.8
Q ss_pred cccCcccccccCcccCCCC-cceeeccccc-ceEEc---cCCCCHHHHHHHHHhCcccccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVY---NQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g-~a~v~---~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+++...|++|+.|..++| +.+.+++..+ ..... ...+....+..+++.||++||.+...
T Consensus 4 ~~~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 4 PVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CeEcCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeee
Confidence 3556678999999999999 5576654212 11111 12233446679999999999987443
No 84
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0012 Score=55.79 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=45.6
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-------PETTNFCMFINEVYAVL 123 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-------~~~~~~~~~i~~Ay~vL 123 (272)
.+.|.+||+...++..+|+++|+++...+|||+.... ....+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999985331 13567778899998754
No 85
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=96.58 E-value=0.00041 Score=53.30 Aligned_cols=62 Identities=27% Similarity=0.566 Sum_probs=37.5
Q ss_pred CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCH---HHHHHHHHhCccccccccc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~---e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+.+|+..|+||+.|...+| ....++.+.+.+..-+--.+. ...-..+..||++||.+.+
T Consensus 32 ~G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 32 DGIVVIDEDKCIGCGYCVEACPYGAIRFDPDTGKARKCDLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp TS-EEE-TTTCCTHHHHHHH-TTS-EEEETTTTCEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred CCeEEechhhccCchhhhhhhccCcceeecccccCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence 4668899999999999999999 666677665654433221111 1224789999999998865
No 86
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=96.57 E-value=0.00085 Score=50.25 Aligned_cols=61 Identities=23% Similarity=0.435 Sum_probs=40.0
Q ss_pred CCccccCcccccccCcccCCCC-cceeecc--ccc----------c----eEEccCCCCHHHHHHHHHhCcccccccc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEE--DFG----------R----ARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~--d~g----------~----a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
...+.+|...|++|+.|..++| +.+.++. +.+ . ...............++..||++||..+
T Consensus 13 ~~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 13 QFVTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred ceeEEECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 3446779999999999999998 5555542 001 1 0111123334466789999999999865
No 87
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.54 E-value=0.00097 Score=51.75 Aligned_cols=58 Identities=26% Similarity=0.454 Sum_probs=41.2
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.+|...|++|+.|...+|. .+.++++ +.. +++ .+....+..+++.||++||.+...
T Consensus 45 ~p~i~~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id-~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 45 MPVVDESKCVKCYICWKFCPEPAIYIKED-GYV-AID-YDYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred eEEECcccCccccchhhhCCHhheEecCC-CcE-EeC-chhCcCcchhhhhcCcCcEEeccc
Confidence 456788999999999999985 4555543 322 222 223345668999999999988754
No 88
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.42 E-value=0.00054 Score=51.26 Aligned_cols=58 Identities=29% Similarity=0.378 Sum_probs=39.7
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccce-EEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRA-RVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a-~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...+|+.+|++|++|+..||+. +.+.++.... .-++ -..=+--++..||++||.++..
T Consensus 29 rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYd---yCKGCGICa~vCP~kaI~Mv~E 88 (91)
T COG1144 29 RPVVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYD---YCKGCGICANVCPVKAIEMVRE 88 (91)
T ss_pred eeEEcccccccCceeEEECCchheeeccCCccceeEcc---cccCceechhhCChhheEeEee
Confidence 4568999999999999999976 5555542222 1111 1122337889999999998764
No 89
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.40 E-value=0.0012 Score=48.49 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=39.0
Q ss_pred cccCcccccccCcccCCCC-cceeecccccc--eEE-c-cCCCCHHHHHHHHHhCccccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGR--ARV-Y-NQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~--a~v-~-~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
++.+...|++|+.|..++| ..+.+++..+. ..+ . ...+.......+++.||++||.+..
T Consensus 3 ~~~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 66 (80)
T TIGR03048 3 SVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRV 66 (80)
T ss_pred ceecCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEE
Confidence 3456677999999999999 55666542121 111 1 1123344667999999999998743
No 90
>PRK13984 putative oxidoreductase; Provisional
Probab=96.39 E-value=0.0012 Score=65.99 Aligned_cols=61 Identities=21% Similarity=0.529 Sum_probs=39.5
Q ss_pred ccccCcccccccCcccCCCCcc-eee------cccccce--EEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-FKI------EEDFGRA--RVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-F~~------e~d~g~a--~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.+|...|++|+.|...||.. +.+ ++.+|.. ...........+..+++.||++||.+...
T Consensus 39 ~~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~~ 108 (604)
T PRK13984 39 FHINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTRE 108 (604)
T ss_pred ccccChhhCcCccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecce
Confidence 3557889999999999999932 222 2222322 11111223345678999999999998653
No 91
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=96.38 E-value=0.0099 Score=52.60 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=41.8
Q ss_pred CccccCcccccccCcccCCCCc---ceeec--ccccceEEccC-------CCCHHHHHHHHHhCcccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPE---VFKIE--EDFGRARVYNQ-------CGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~---vF~~e--~d~g~a~v~~q-------~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+.+|...|++|+.|...|++ .+.++ .......+... ......+..+++.||++||.....
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 4567899999999999999984 23332 22123333321 123345688999999999998766
No 92
>PRK02651 photosystem I subunit VII; Provisional
Probab=96.29 E-value=0.0015 Score=47.89 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=36.8
Q ss_pred cCcccccccCcccCCCC-cceeeccccc-ceEEc---cCCCCHHHHHHHHHhCccccccccc
Q 024126 158 VDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVY---NQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap-~vF~~e~d~g-~a~v~---~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.....|++|+.|..+|| ..+.+++..+ ....+ ...+.......++..||++||.+..
T Consensus 6 ~~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 6 KIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred cccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence 34567999999999999 5566543211 11111 1123334567899999999999643
No 93
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.29 E-value=0.008 Score=48.28 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=40.9
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCcc
Q 024126 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV 127 (272)
Q Consensus 66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~ 127 (272)
.+.......||||++..+.++|.+.|.+|....+|+++++ .-.-.+|..|.+.|....
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence 4566678999999999999999999999999999998877 333456888888886544
No 94
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=96.25 E-value=0.001 Score=56.63 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=45.1
Q ss_pred CCCccccCcccccccCcccCCCCc-ceeeccc--ccceEEccCCCCHHHHHHHHHhCcccccccccchhh
Q 024126 152 PKDHVFVDEFSCIGCKNCNNVAPE-VFKIEED--FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 152 ~~~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d--~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l 218 (272)
..+.+.+|...|++|+.|..+||. .+.++.+ .|........+....+..+++.||++||.+...-++
T Consensus 29 ~rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~~ 98 (181)
T PRK08222 29 FRGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFEL 98 (181)
T ss_pred ccCceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEeccceee
Confidence 345678899999999999999984 3444432 121111122344556679999999999998765443
No 95
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.24 E-value=0.0027 Score=54.18 Aligned_cols=67 Identities=24% Similarity=0.530 Sum_probs=43.1
Q ss_pred CCccccCcccccccCcccCCCCcc-eeeccccc----c---eEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG----R---ARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g----~---a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
...+.++...|++|+.|..+||.. +.+..+.+ . .......+....+..+++.||++||.+....++.
T Consensus 54 rG~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~ 128 (183)
T TIGR00403 54 RGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 128 (183)
T ss_pred cceEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecccccccc
Confidence 345778889999999999999953 22111100 0 0111123445567799999999999987765443
No 96
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0024 Score=54.08 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=50.1
Q ss_pred CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhcc
Q 024126 71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 71 d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
+++.++|....+ ..+.++..|+.+++.+|||+....+. ..+.+..+|.||.+|.||-.|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455556666543 56778999999999999999877443 33467889999999999999999843
No 97
>PRK06991 ferredoxin; Provisional
Probab=96.17 E-value=0.0024 Score=57.84 Aligned_cols=60 Identities=23% Similarity=0.470 Sum_probs=41.1
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
..+.+|+..|++|+.|..+|| +.+.+.++ +.. .+. ......+..++..||++||.+....
T Consensus 78 ~~~~id~~~CigCg~Cv~aCP~~AI~~~~~-~~~-~v~-~~~CigCg~Cv~vCP~~AI~~~~~~ 138 (270)
T PRK06991 78 AVAVIDEQLCIGCTLCMQACPVDAIVGAPK-QMH-TVL-ADLCTGCDLCVPPCPVDCIDMVPVT 138 (270)
T ss_pred ceeEEccccCCCCcHHHHhCCHhheecccc-cce-eeC-HhhCCCchHHHhhCCcCCeEeecCc
Confidence 345678899999999999999 34444332 222 221 2334456789999999999876543
No 98
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.005 Score=43.59 Aligned_cols=56 Identities=18% Similarity=0.441 Sum_probs=45.0
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
.++.+...|+.-++|..-.|.+|.+.. +.=...+..+.+.++..+++||.+||...
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~vF~~~r---kPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPKVFNLGR---KPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred EEEeccceeecccceecCCHhhcccCC---CCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 355567779999999999999998853 22344557789999999999999999864
No 99
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=96.14 E-value=0.002 Score=58.75 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=45.8
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCH---HHHHHHHHhCcccccccccchhhhhHH
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTSAQQLSLLE 222 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~---e~i~~Av~~CP~~aI~~~~~~~l~~le 222 (272)
..+.+|+..|+||+.|...|| +...++++.+.+..-.-..+. ...-.++.+||++||.+.+.+++....
T Consensus 117 G~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~a 189 (283)
T TIGR01582 117 GIVDFDHSKCIGCGYCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERA 189 (283)
T ss_pred CcEEEeHHHCCcchHHHhhCCCCCcEEcCCCCChhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHHH
Confidence 456789999999999999998 456666542322111101100 011268999999999999988776554
No 100
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=96.11 E-value=0.0026 Score=57.87 Aligned_cols=61 Identities=23% Similarity=0.532 Sum_probs=40.6
Q ss_pred CCccccCcccccccCcccCCCCcc-eeec--ccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIE--EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~v-F~~e--~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
...+.+|...|++|+.|..+||.. ..++ .+ +...+.........+..++..||++||.+..
T Consensus 40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~-~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g 103 (295)
T TIGR02494 40 SPELLFKENRCLGCGKCVEVCPAGTARLSELAD-GRNRIIIRREKCTHCGKCTEACPSGALSIVG 103 (295)
T ss_pred CceEEEccccCCCCchhhhhCcccccccccccC-CCcceeechhhcCchhHhhccCcHhHHhhhc
Confidence 456788999999999999999843 1111 11 1111222233345677999999999999854
No 101
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.05 E-value=0.0026 Score=54.07 Aligned_cols=67 Identities=25% Similarity=0.483 Sum_probs=45.0
Q ss_pred CCccccCcccccccCcccCCCCc-ceeecccc--cceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDF--GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~--g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
...+.+|...|++|+.|..+||. .+.++.+. |........+....+..++..||++||.+...-++.
T Consensus 30 rg~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~~~~~ 99 (180)
T PRK12387 30 RGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELA 99 (180)
T ss_pred CCceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCccchh
Confidence 35577899999999999999984 45555431 211111123344456789999999999987654443
No 102
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=95.94 E-value=0.018 Score=53.12 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=38.3
Q ss_pred ccccCcccccccCcccCCCCcceee---cccc---cc---eEEcc-CCCCHHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKI---EEDF---GR---ARVYN-QCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~---e~d~---g~---a~v~~-q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
...+|...|++|+.|...||..... .... +. ..+.. ....+..+..+++.||++||.++.
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 4456889999999999999954211 1100 11 11111 123345677899999999998764
No 103
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=95.94 E-value=0.009 Score=53.76 Aligned_cols=97 Identities=16% Similarity=0.306 Sum_probs=66.0
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhhhc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVN 232 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~~~ 232 (272)
..+.+ ...|++|+.|...|| .+|.+++ |...+.. ......+.+++..||.+||.+...++-
T Consensus 163 p~I~i-~~~C~~C~~C~~~CP~~vi~~~~--~~~~v~~-~~~C~~C~~Ci~~CP~~AI~i~~~~~~-------------- 224 (263)
T PRK00783 163 PRIEV-SEDCDECEKCVEACPRGVLELKE--GKLVVTD-LLNCSLCKLCERACPGKAIRVSDDENK-------------- 224 (263)
T ss_pred ccccc-cccCCchHHHHHhCCccccEecC--CeEEEeC-hhhCCCchHHHHhCCCCceEEEEcCCe--------------
Confidence 33455 678999999999999 4788876 4444442 223345678889999999998765321
Q ss_pred eeeecCCCCCC-cchhHHHHHHHHHhHHHHHHHHhhh
Q 024126 233 VAMMLSGMGSG-SADVFRMASSRWERRQAKVLVCYVH 268 (272)
Q Consensus 233 v~~~~~g~g~~-~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (272)
..+.+-.-|.= ..+.|..|...++.+-.++++....
T Consensus 225 ~if~vEs~G~l~p~~iv~~A~~~l~~k~~~~~~~~~~ 261 (263)
T PRK00783 225 FIFTVESDGSLPVEEILLEALKILKRKADELIEALEE 261 (263)
T ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11223343543 4889988888888888777766543
No 104
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=95.91 E-value=0.0028 Score=51.35 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=39.5
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.+|...|++|+.|..+||.. +...+ +....+. .+....+..+++.||++||.+.-.
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~--~~~~~i~-~~~C~~Cg~Cv~vCP~~a~~l~~~ 111 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRD--KKLKGVD-YSHCKGCGVCVEVCPTNPKSLLMF 111 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecC--CceEEeC-cCcCcChhHHHHHCCcCceEEEec
Confidence 4557889999999999999954 33333 3322232 233456778999999999765443
No 105
>PRK09898 hypothetical protein; Provisional
Probab=95.88 E-value=0.0048 Score=53.62 Aligned_cols=59 Identities=17% Similarity=0.456 Sum_probs=42.5
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
.+.+|...|++|+.|...||.. ..++.+.+ ..+....+..+++.||++||.+++.++++
T Consensus 148 ~v~vd~~~CigC~~C~~aCP~~ai~~~~~~~------~~~kC~~Cg~Cv~~CP~~Ai~~~~~~~~~ 207 (208)
T PRK09898 148 CITVDHKRCIGCSACTTACPWMMATVNTESK------KSSKCVLCGECANACPTGALKIIEWKDIT 207 (208)
T ss_pred eEEeccccCCCcCcccccCCCCCCEecCCCC------cCCcCcChHHHHHhCCcccEEEecHHHcc
Confidence 4667889999999999999943 33433211 12234556799999999999998877653
No 106
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=95.85 E-value=0.0018 Score=50.30 Aligned_cols=56 Identities=20% Similarity=0.422 Sum_probs=39.4
Q ss_pred cccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+|...|++|+.|..+||. .+.++++ +.. +++ .+....+..+++.||.+||.+..
T Consensus 46 p~~d~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id-~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 46 PEFNRDKCVRCYLCYIYCPEPAIYLDEE-GYP-VFD-YDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred EEEChhHCcChhhHHhhCCHhhEEecCC-CcE-EEC-chhCCCcCchhhhcCcCcEEEec
Confidence 35688899999999999994 4656543 322 232 22334566899999999998764
No 107
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=95.82 E-value=0.002 Score=53.54 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=45.8
Q ss_pred ccccCCCCCCCCCCCCccccCcccccccCcccCCCC-cceeec--c-cccceEEccC---CCCHHHHHHHHHhCcccccc
Q 024126 139 SLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAP-EVFKIE--E-DFGRARVYNQ---CGINEFVQQAIESCPVDCIH 211 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~~~v~vDe~~Cigcg~C~~~ap-~vF~~e--~-d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~ 211 (272)
......+-|.++-...+.-..+..||.|+.|..+|| +...++ . ..|..+..+= .+-+.-+--+++.|||+||.
T Consensus 89 EKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 89 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred ccCCCCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCcccee
Confidence 334445555554455566678889999999999998 333333 2 1243332221 12223344788999999998
Q ss_pred ccc
Q 024126 212 RTS 214 (272)
Q Consensus 212 ~~~ 214 (272)
...
T Consensus 169 egp 171 (212)
T KOG3256|consen 169 EGP 171 (212)
T ss_pred ccC
Confidence 543
No 108
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=95.81 E-value=0.0044 Score=53.30 Aligned_cols=60 Identities=25% Similarity=0.561 Sum_probs=42.1
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
....+|...|++|+.|...|| +.+.+.++ +...+. ......+..++..||++||.+.+..
T Consensus 107 ~~~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~-~~~~v~--~~~C~~Cg~Cv~vCP~~AI~~~~~~ 167 (191)
T PRK05113 107 KVAFIDEDNCIGCTKCIQACPVDAIVGATK-AMHTVI--SDLCTGCDLCVAPCPTDCIEMIPVA 167 (191)
T ss_pred ceeEEeCCcCCCCChhhhhCCHhhhecccC-Cceeec--CCcCCchHHHHHHcCcCceEEeecc
Confidence 346779999999999999998 33333332 322222 2344567799999999999987654
No 109
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.78 E-value=0.0038 Score=59.84 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=42.2
Q ss_pred CccccCcccccccCcccCCCCc----ceeecccccc-eEEccCCCCHHHHHHHHHhCcc-cccccccch
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPE----VFKIEEDFGR-ARVYNQCGINEFVQQAIESCPV-DCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~----vF~~e~d~g~-a~v~~q~g~~e~i~~Av~~CP~-~aI~~~~~~ 216 (272)
....+|+..|++|+.|...||. .+.++++ |. ...+. ...+..+..++..||+ +||++....
T Consensus 335 ~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~-~~~~~~i~-~~~C~~Cg~C~~~CP~~~Ai~~~~~~ 401 (420)
T PRK08318 335 VYARIDQDKCIGCGRCYIACEDTSHQAIEWDED-GTRTPEVI-EEECVGCNLCAHVCPVEGCITMGEVK 401 (420)
T ss_pred eEEEECHHHCCCCCcccccCCCcchhheeeccC-CCceEEec-hhhCcccchHHhhCCCCCCEEEeccC
Confidence 3456788999999999999995 4555443 22 22222 3334567789999999 999877653
No 110
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.77 E-value=0.011 Score=57.18 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=32.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCCCch---H----HHHHHHHHHHHHHHh
Q 024126 78 LLPDATPEQIKKAYYNCMKACHPDLSGDDP---E----TTNFCMFINEVYAVL 123 (272)
Q Consensus 78 v~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~----~~~~~~~i~~Ay~vL 123 (272)
+..=.+.++||++|||..+..||||.+..+ + +++.|-.+++||+..
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 334468999999999999999999987643 2 344445555555543
No 111
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=95.74 E-value=0.0067 Score=54.43 Aligned_cols=54 Identities=26% Similarity=0.499 Sum_probs=37.0
Q ss_pred CcccccccCcccCCCCcc--eeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126 159 DEFSCIGCKNCNNVAPEV--FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~v--F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
|+..|++|+.|..+||.. .......+....+ ..++...+.++++.||++||.+.
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLV-LSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEe-ccccccchhHHHHhCCccccccc
Confidence 488999999999999953 2222110122122 24556788899999999999874
No 112
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=95.72 E-value=0.0024 Score=50.50 Aligned_cols=59 Identities=29% Similarity=0.509 Sum_probs=38.6
Q ss_pred ccccccCcccCCCC-cceeecccc---cce---EEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126 161 FSCIGCKNCNNVAP-EVFKIEEDF---GRA---RVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 161 ~~Cigcg~C~~~ap-~vF~~e~d~---g~a---~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
..|++|+.|..+|| ..+.+.... +.. ......+....+..++..||++||.+....+..
T Consensus 43 ~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~~~~~ 108 (122)
T TIGR01971 43 EKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFELA 108 (122)
T ss_pred CcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccceeeec
Confidence 88999999999999 555554311 111 111113334456789999999999987765443
No 113
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=95.71 E-value=0.0026 Score=48.89 Aligned_cols=59 Identities=17% Similarity=0.455 Sum_probs=39.4
Q ss_pred cCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchh
Q 024126 158 VDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~ 217 (272)
++...|++|+.|...+|. .+.++.+ |...+....+.......++..||+++|.-.+..+
T Consensus 31 ~~~~~C~~C~~C~~~CP~~~i~~~~~-g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~~~~ 90 (101)
T TIGR00402 31 LFSAVCTRCGECASACENNILQLGQQ-GQPTVEFDNAECDFCGKCAEACPTNAFHPRFPGD 90 (101)
T ss_pred cCcCcCcChhHHHHHcCcccceeccC-CceeeEecCccCcCccChhhHCCccccCcCCCCC
Confidence 455689999999999995 3555432 4332222333445567899999999998655443
No 114
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=95.68 E-value=0.0051 Score=51.45 Aligned_cols=62 Identities=31% Similarity=0.462 Sum_probs=39.3
Q ss_pred ccccCcc-----cccccCcccCCCCcc-eeecccc---cceE---EccCCCCHHHHHHHHHhCcccccccccch
Q 024126 155 HVFVDEF-----SCIGCKNCNNVAPEV-FKIEEDF---GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 155 ~v~vDe~-----~Cigcg~C~~~ap~v-F~~e~d~---g~a~---v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
.+.++.. .|++|+.|..+||.. +.++... |... .....+....+..++..||++||.+....
T Consensus 47 ~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 120 (164)
T PRK05888 47 RHALRRDPNGEERCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDF 120 (164)
T ss_pred EEeecCCCCCCccCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCcc
Confidence 3444555 899999999999943 4443211 2211 11123344566789999999999987654
No 115
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=95.58 E-value=0.0073 Score=54.63 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=38.6
Q ss_pred cCcccccccCcccCCCCcceeecc-cccc-eEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 158 VDEFSCIGCKNCNNVAPEVFKIEE-DFGR-ARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~vF~~e~-d~g~-a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+|+..|++|+.|...||..-.+++ ..+. .......++...+.++++.||++||.+..+
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~r 264 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFTIR 264 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeeccc
Confidence 788999999999999995422220 0011 110112345667889999999999997643
No 116
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=95.55 E-value=0.004 Score=45.22 Aligned_cols=57 Identities=28% Similarity=0.426 Sum_probs=38.6
Q ss_pred cccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+.++...|++|+.|..++|.. +.++++ +.. .+. .+.......++..||++||.+...
T Consensus 20 ~~i~~~~C~~C~~C~~~Cp~~ai~~~~~-~~~-~i~-~~~C~~C~~C~~~CP~~Ai~~~~~ 77 (78)
T TIGR02179 20 PVVDKEKCIKCKNCWLYCPEGAIQEDEG-GFV-GID-YDYCKGCGICANVCPVKAIEMVRE 77 (78)
T ss_pred EEEcCCcCcChhHHHhhcCccceEecCC-CcE-Eec-CccCcCccchhhhCCccccEeccC
Confidence 466788899999999999943 444332 322 222 223345578899999999987643
No 117
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=95.45 E-value=0.0054 Score=51.52 Aligned_cols=66 Identities=24% Similarity=0.500 Sum_probs=42.3
Q ss_pred CccccCcccccccCcccCCCCcc-eeecccc----cceE---EccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDF----GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~----g~a~---v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
..+.++...|++|+.|..+||.. ..++.++ +... .....+....+..+++.||++||.+....++.
T Consensus 52 g~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~~ 125 (167)
T CHL00014 52 GRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 125 (167)
T ss_pred CeEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCccccc
Confidence 44557788899999999999954 2221110 1111 11113445677889999999999987665444
No 118
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=95.28 E-value=0.0091 Score=50.06 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=39.4
Q ss_pred CccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
....+|...|++|+.|...||. .+.++++ +. ..+. ......+..++..||++||.++
T Consensus 106 ~~~~id~~~Ci~Cg~C~~aCp~~ai~~~~~-~~-~~i~-~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 106 MVALIDEDNCIGCTKCIQACPVDAIVGAAK-AM-HTVI-ADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred ceEEEECCcCCChhHHHHhCCccceEecCC-Cc-eEee-cccccChhHHHHhcCcCceEee
Confidence 3467889999999999999983 3333332 22 2222 2334457799999999999875
No 119
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.15 E-value=0.0053 Score=33.97 Aligned_cols=20 Identities=35% Similarity=0.863 Sum_probs=17.0
Q ss_pred ccccCcccccccCcccCCCC
Q 024126 155 HVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap 174 (272)
.+++|..+|+||+.|...||
T Consensus 2 ~~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 2 GMVIDLERCIGCGACEVACP 21 (22)
T ss_pred ceEEccccccCchhHHHhhC
Confidence 46789999999999987665
No 120
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=95.08 E-value=0.011 Score=51.97 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=38.4
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHH----HHHHHHhCcccccccccchhh
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEF----VQQAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~----i~~Av~~CP~~aI~~~~~~~l 218 (272)
.+.+|...|++|+.|...||.. -.++...+....-.--++... .=.+++.||++||.+.+.+++
T Consensus 119 ~v~id~~~C~~C~~C~~aCP~~A~~~~~~~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~~ 187 (225)
T TIGR03149 119 IVDVHKDLCVGCQYCIAACPYRVRFIHPVTKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLNDP 187 (225)
T ss_pred eEEechhhCCcchHHHHhCCCCCcEecCCCCccccCCCCCcchhhCCCCCcccccCccCCEEEeccccc
Confidence 4567888999999999999943 222322121110011221000 016899999999999887653
No 121
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=95.07 E-value=0.0086 Score=53.43 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=41.1
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhhh
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~ 219 (272)
..+.+|...|+||+.|...|| +...++++.+....-.-.+ +.+. .++..||++||.+.+..+..
T Consensus 123 G~v~id~~~CigC~~Cv~aCP~~Ai~~~~~~~~~~KC~~C~--~r~~~G~~PaCv~~CP~~Al~~g~~~~~~ 192 (244)
T PRK14993 123 GIVVVDNKRCVGCAYCVQACPYDARFINHETQTADKCTFCV--HRLEAGLLPACVESCVGGARIIGDIKDPH 192 (244)
T ss_pred CCEEEcHHHCCCHHHHHHhcCCCCCEEeCCCCCcccCcCCc--chhhCCCCcccchhcccCCEEEcccccch
Confidence 346789999999999999999 4555554322111000011 1111 58899999999988776543
No 122
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=94.85 E-value=0.013 Score=43.88 Aligned_cols=60 Identities=23% Similarity=0.430 Sum_probs=38.4
Q ss_pred ccCcccccccCcccCCCCcc-eeeccccc-ceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDFG-RARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~v-F~~e~d~g-~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
.++...|++||.|..+||.. ..+..+.. .............+...+..||++||.+....
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~ 86 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEEL 86 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhcc
Confidence 56777899999999999954 33332210 01111113334566688899999998876553
No 123
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=94.70 E-value=0.0091 Score=55.53 Aligned_cols=66 Identities=24% Similarity=0.452 Sum_probs=39.7
Q ss_pred CccccCcccccccCcccCCCCcc-eeeccc--ccceEEccCCCC--HHHHH-----HHHHhCcccccccccchhhh
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEED--FGRARVYNQCGI--NEFVQ-----QAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~v-F~~e~d--~g~a~v~~q~g~--~e~i~-----~Av~~CP~~aI~~~~~~~l~ 219 (272)
..+.+|...|++|+.|...||.. ..++.+ .+....-.-.++ .+.+. .++..||++||.+.+.+++-
T Consensus 136 g~V~id~dkCigCg~Cv~aCP~gai~~~~~~~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~ 211 (328)
T PRK10882 136 GIVHYDKDVCTGCRYCMVACPFNVPKYDYNNPFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELL 211 (328)
T ss_pred CcccCCHHHcCcccHHHHhCCccceeccccccccceeecccccccchhhhhcCCCChhhhhccccceEeccHHHHH
Confidence 45677889999999999999933 333321 111111111111 01111 29999999999988876543
No 124
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=94.69 E-value=0.018 Score=47.84 Aligned_cols=62 Identities=24% Similarity=0.495 Sum_probs=36.8
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhh
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l 218 (272)
.+.+|...|++|+.|...+|. .+.++.+.+.+..- .+=.+.+. .++..||++||.+.+.+++
T Consensus 89 ~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~~~~~kC--~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~~~~ 156 (161)
T TIGR02951 89 LVLVDQDKCIGCRYCVWACPYGAPQYDPQQGVMGKC--DGCYDRVEKGLRPACVDACPMRALDFGPIDEL 156 (161)
T ss_pred cEEECHHhCCCchHHHhhCCCCCcEEcCCCCccccC--CCCHHHHHCCCCCcchhhccccceEEecHHHH
Confidence 345677788888888888883 45555432221110 11112222 5888888888888776654
No 125
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=94.60 E-value=0.01 Score=50.27 Aligned_cols=69 Identities=20% Similarity=0.359 Sum_probs=42.0
Q ss_pred ccccCcccccccCcccCCCCcc-eeeccccc--c---eE-EccCC---CCHHHHH------HHHHhCcccccccccchhh
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG--R---AR-VYNQC---GINEFVQ------QAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g--~---a~-v~~q~---g~~e~i~------~Av~~CP~~aI~~~~~~~l 218 (272)
.+.+|+..|++|+.|...||.. ..+..+.. . .. ..... ...+... .++..||++||.+++..++
T Consensus 81 ~v~i~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~ 160 (181)
T PRK10330 81 FVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL 160 (181)
T ss_pred eEEeChhhCCCcchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHH
Confidence 3567888999999999999833 33332100 0 00 00000 0111222 6899999999999998877
Q ss_pred hhHHH
Q 024126 219 SLLED 223 (272)
Q Consensus 219 ~~le~ 223 (272)
..++.
T Consensus 161 ~~~~~ 165 (181)
T PRK10330 161 EQLSA 165 (181)
T ss_pred HHHHH
Confidence 66553
No 126
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=94.57 E-value=0.011 Score=55.99 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=38.2
Q ss_pred cccCcccccccCcccCCCCcceee-----cccccceEEc------cCCCCHHHHHHHHHhCcccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKI-----EEDFGRARVY------NQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~-----e~d~g~a~v~------~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
+.+|...|++|+.|..+||..... .++.+...+. ........+..++..||++||.+.
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 457888999999999999955322 1211122111 112334456789999999999876
No 127
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=94.52 E-value=0.018 Score=55.12 Aligned_cols=54 Identities=19% Similarity=0.465 Sum_probs=38.4
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
.+.+|...|++|+.|...||.. +..++ . ..++. ...+..+..++..||++||..
T Consensus 4 ~~~id~~~Ci~C~~C~~~CP~~ai~~~~--~-~~~i~-~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 4 QHLIDPEICIRCNTCEETCPIDAITHDD--R-NYVVK-ADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eeeeCcccCcCccchhhhCCcccEeccC--C-ceEeC-cccCcCHHHHHhhcCccccee
Confidence 4567888999999999999943 33332 2 22232 334557889999999999984
No 128
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=94.50 E-value=0.0092 Score=61.77 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=40.1
Q ss_pred CccccCcccccccCcccCCCCccee-----ecccccceE-----------------------EccC---CCCHHHHHHHH
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEVFK-----IEEDFGRAR-----------------------VYNQ---CGINEFVQQAI 202 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~vF~-----~e~d~g~a~-----------------------v~~q---~g~~e~i~~Av 202 (272)
..+..|...||.|+.|+.+|+++-. +......+. +... ..++..+-+++
T Consensus 134 ~~I~~D~~rCI~C~RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv 213 (819)
T PRK08493 134 GKINYDPSLCIVCERCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECI 213 (819)
T ss_pred CcEEechhhcccccHHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHH
Confidence 3577899999999999999987522 111101110 1011 23445667999
Q ss_pred HhCcccccccccc
Q 024126 203 ESCPVDCIHRTSA 215 (272)
Q Consensus 203 ~~CP~~aI~~~~~ 215 (272)
+.|||+||...+.
T Consensus 214 ~VCPvGAL~~k~~ 226 (819)
T PRK08493 214 AVCPVGALSSSDF 226 (819)
T ss_pred HhCCCCccccCcc
Confidence 9999999987653
No 129
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=94.48 E-value=0.0097 Score=39.68 Aligned_cols=49 Identities=27% Similarity=0.534 Sum_probs=17.9
Q ss_pred cccCcccccccCcccCCCCc-c-eeecccccceEEccCCCCHHHHHHHHHhCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE-V-FKIEEDFGRARVYNQCGINEFVQQAIESCP 206 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~-v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP 206 (272)
+.+|...|++|+.|..++|. . ..+... +....+ ...+-......+..||
T Consensus 2 i~id~~~C~~C~~C~~~CP~~~~~~~~~~-~~~~~~-~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPADNAIAIDDG-EKKVEI-DPERCIGCGACVEVCP 52 (52)
T ss_dssp ----TT------TTGGG-TT-----EEE--SSSEEE--TTT--TTSHHHHH-T
T ss_pred CccCcccCcCCcChHHHccchhHHHhhcc-CCCeEe-CcccccccChhhhhCc
Confidence 56789999999999999998 1 112221 222222 2334444557777777
No 130
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.40 E-value=0.0064 Score=34.45 Aligned_cols=20 Identities=50% Similarity=1.095 Sum_probs=17.5
Q ss_pred cccCcccccccCcccCCCCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~ 175 (272)
+.+|+..|+|||.|..++|.
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred cEEChhhCcChhHHHHhcch
Confidence 46789999999999999984
No 131
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=94.40 E-value=0.03 Score=56.71 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhCCC------CCCCchHHHHHHHHHHHHHHHhcCccccchhccccccccccCCCCCCCCCCCCccc
Q 024126 84 PEQIKKAYYNCMKACHPD------LSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVF 157 (272)
Q Consensus 84 ~~~Ik~ayr~l~~~~HPD------~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~~~~~~~~~~~~~~~~~v~ 157 (272)
.+++++---.+.+..||= .+.++ =.|.++-..|+=..+|--|+.- +++...........
T Consensus 81 vk~~r~~~md~~l~nH~LyC~vCd~nnGd-------Celh~~~~~~gl~~q~y~y~~k--------~~~~~~Des~Pfy~ 145 (978)
T COG3383 81 VKEARREAMDRILSNHPLYCTVCDNNNGD-------CELHNMVMALGLTEQRYPYEEK--------NPPYPKDESNPFYI 145 (978)
T ss_pred HHHHHHHHHHHHHhcCCcCccccCCCCCC-------chHHHHHHHhCCCccccCcccc--------CCCCCcccCCCeEE
Confidence 345555555667778983 23221 1344444555555555556542 12221111112234
Q ss_pred cCcccccccCcccCCCCcc---eee--cccccceEEccC------CCCHHHHHHHHHhCcccccc
Q 024126 158 VDEFSCIGCKNCNNVAPEV---FKI--EEDFGRARVYNQ------CGINEFVQQAIESCPVDCIH 211 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~v---F~~--e~d~g~a~v~~q------~g~~e~i~~Av~~CP~~aI~ 211 (272)
.|...||-||.|+..|-++ |.+ +.+--..+|+-. ..++..+-.++..||++|+-
T Consensus 146 ydp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 146 YDPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred ecchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhh
Confidence 6888899999999998654 443 332234555543 23445677999999999975
No 132
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=94.39 E-value=0.0098 Score=52.66 Aligned_cols=56 Identities=23% Similarity=0.466 Sum_probs=40.3
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+.+|...|++|+.|..+|| +.+.+++ +.. .++ ......+..++..||++||.....
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~~~--~~~-~i~-~~~C~~Cg~C~~~CP~~AI~~~~~ 199 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDMVD--GKA-FIR-LLKCVGCGKCKEACPYNAIHGGLE 199 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEecC--Cce-EEc-hhhCCccchHHhhCCCCceecCCc
Confidence 4678889999999999999 4566554 332 221 223345678999999999997643
No 133
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=94.05 E-value=0.057 Score=49.23 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=45.1
Q ss_pred ccccCcccccccCcccCCCCcc-----eeecccccceEEccCCCCH----HHHHHHHHhCcccccccccchhhhhHHHHH
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCGIN----EFVQQAIESCPVDCIHRTSAQQLSLLEDEM 225 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q~g~~----e~i~~Av~~CP~~aI~~~~~~~l~~le~~~ 225 (272)
.+.+|..+||-|+.|+.+|.++ +.+...-...++....+.. ....++++.|||+||...+.++-+++...+
T Consensus 206 ~i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~~~~~~~~~~ 285 (297)
T PTZ00305 206 QTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDADENNAIAREL 285 (297)
T ss_pred ceeecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCcccchHHHHHh
Confidence 3557889999999999998654 3333331223333322211 123458999999999988887766655443
No 134
>PRK08764 ferredoxin; Provisional
Probab=93.98 E-value=0.021 Score=46.32 Aligned_cols=53 Identities=25% Similarity=0.518 Sum_probs=34.3
Q ss_pred ccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126 157 FVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
++++..|++|+.|..++|. .+.++++ +... +. .........++..||++||.+
T Consensus 81 ~~~~~~Ci~C~~Cv~aCp~~ai~~~~~-~~~~-v~-~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 81 WIVEADCIGCTKCIQACPVDAIVGGAK-HMHT-VI-APLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred EECcccCcCcchHHHhCChhhcCccCC-Ccee-ec-CCcCcCccchhhhcCccceEe
Confidence 3456789999999999983 2333222 2222 21 223345668999999999975
No 135
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=93.81 E-value=0.067 Score=48.01 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=57.8
Q ss_pred ccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhhhceeeecCC
Q 024126 161 FSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSG 239 (272)
Q Consensus 161 ~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~~~v~~~~~g 239 (272)
..|++|+.|...|| .+|.+++ +...+.+ ......+.+++..||.+||.+...++-- .+.+-+
T Consensus 169 ~~C~~C~~C~~~CP~~vi~~d~--~~~~v~~-~~~C~~C~~C~~~Cp~~AI~~~~~~~~~--------------if~vEs 231 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLELEE--GKVVVED-LEDCSLCKLCERACDAGAIRVGWDEDRF--------------IFEVES 231 (259)
T ss_pred hhCCChHHHHHhCCccceEccC--CeeEEeC-hhhCcCchHHHHhCCCCcEEEEecCCEE--------------EEEEeC
Confidence 67999999999998 6687765 3333332 2344566789999999999976543211 122333
Q ss_pred CCC-CcchhHHHHHHHHHhHHHHHHH
Q 024126 240 MGS-GSADVFRMASSRWERRQAKVLV 264 (272)
Q Consensus 240 ~g~-~~~~~f~~~~~~~~~~~~~~~~ 264 (272)
-|+ ...+.|-.|...++++-.++.+
T Consensus 232 ~Gsl~p~~il~~A~~~l~~k~~~~~~ 257 (259)
T cd07030 232 DGSLPPKEILLEALRILKEKADELIE 257 (259)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 354 3488998888877777655544
No 136
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.72 E-value=0.018 Score=58.24 Aligned_cols=67 Identities=25% Similarity=0.491 Sum_probs=42.5
Q ss_pred ccccCcccccccCcccCCCC-cceeeccccc-ceEEccCCCCHHHHH------HHHHhCcccccccccchhhhhH
Q 024126 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g-~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~~l~~l 221 (272)
.+.+|...|++|+.|...|| ..+.+..+.. .............+. .++..||++||.+.+..++...
T Consensus 79 ~~~id~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~~~~ 153 (654)
T PRK12769 79 SIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQALSGM 153 (654)
T ss_pred eEEEecccccCcChhcccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHHHHH
Confidence 45678899999999999999 4455543211 000001112223333 6889999999999987766443
No 137
>PRK06273 ferredoxin; Provisional
Probab=93.72 E-value=0.011 Score=49.65 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=35.3
Q ss_pred cccCcccccccCcccCCCCc-ceeecccc------cc----eEEccCCCCHHHHHHHHHhCccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDF------GR----ARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~-vF~~e~d~------g~----a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
..+++..|++|+.|..+||. ...++.+. +. ...++ ......+..+++.||++||..
T Consensus 44 ~~id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id-~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 44 KKVFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKID-YEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred CeECchhCcChhHHHHhcCccceeeecccccchhcccccccceecc-cccCcCCCCcchhCCHhheec
Confidence 45688889999999999994 34444210 00 01111 223334568999999999843
No 138
>PRK10194 ferredoxin-type protein; Provisional
Probab=93.65 E-value=0.017 Score=48.11 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=34.3
Q ss_pred CcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 159 DEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+...|++|+.|...+|.. ..+++. |...+.-..+........++.||+++|....
T Consensus 32 ~~~~C~~Cg~C~~aCp~~~i~~~~~-~~~~~~~~~~~C~~C~~C~~~CP~~ai~~~~ 87 (163)
T PRK10194 32 FLTHCTRCDACINACENNILQRGAG-GYPSVNFKNNECSFCYACAQACPESLFSPRH 87 (163)
T ss_pred HhhhCcChhHHHHHcChhhcccCCC-CceeeeecCCCCCCchhhHhhCcchheeccc
Confidence 345799999999999854 334332 3222222233344567888999999887654
No 139
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=93.64 E-value=0.035 Score=57.36 Aligned_cols=61 Identities=16% Similarity=0.343 Sum_probs=41.1
Q ss_pred CccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+..|..+||.|+.|+.+|-++ +.+.......++... .-+.+.+-++++.|||+||.-..
T Consensus 137 p~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 137 PLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred cceeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCcccccccc
Confidence 45677999999999999888544 444333223333322 12345678999999999998554
No 140
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=93.59 E-value=0.0072 Score=53.23 Aligned_cols=62 Identities=24% Similarity=0.555 Sum_probs=38.4
Q ss_pred CCccccCcccccccCcccCCCCcceeecccccceEEccC--CC---------CHH---HHH--HHHHhCccccccccc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--CG---------INE---FVQ--QAIESCPVDCIHRTS 214 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q--~g---------~~e---~i~--~Av~~CP~~aI~~~~ 214 (272)
...+++|...|+||+.|...||..+.+.+......+... .+ ... .+. .++..||++||....
T Consensus 38 ~~~~~iD~~rCigC~~C~~aC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~ 115 (225)
T TIGR03149 38 RYGMVHDETACIGCTACMDACREVNKVPEGVSRLEIIRSEPYGEFPDVEYRFFRKSCQHCDNAPCVAVCPTGASFKDE 115 (225)
T ss_pred eEEEEEEHHHCcCcHHHHHHhhHHhCCCCCCceEEEEEecccCCCCCceeEECchhccCCcCcChHhhCCCCcEEEeC
Confidence 455788999999999999999976554432122222110 00 111 122 388999999998643
No 141
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=93.54 E-value=0.1 Score=54.56 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=40.1
Q ss_pred CccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+..|...||.|+.|+.+|-++ +.+.....+..+-.. .-+.+.+-++++.|||+||.-..
T Consensus 142 ~~i~~d~~rCi~C~rCVr~c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 142 PFISHEMNRCIACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred CceEecCCcCccccHHHHHHHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccccc
Confidence 34678999999999999988644 333322122222211 22345778999999999988554
No 142
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=93.34 E-value=0.074 Score=51.37 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=33.0
Q ss_pred cccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 160 EFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 160 e~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+..|++|+.|..+||....+++ +. ..++..+..+++.||. ++....
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~~~--~~------~~~Ci~Cg~CidaCp~-a~~~~g 275 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDIRD--GL------QLECINCGLCIDACDD-VMEKMG 275 (434)
T ss_pred CCCCCChhhhHHhCCCCCEeCC--CC------chhChhhhHHHHhCCC-hHHhcC
Confidence 5679999999999997644433 21 2356678899999997 554433
No 143
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=93.23 E-value=0.069 Score=53.63 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=41.2
Q ss_pred ccccCcccccccCcccCCCCc-----ceeecccccceEEccCCC---CHHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~-----vF~~e~d~g~a~v~~q~g---~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+..|..+||.|+.|+.+|-+ .+.+...-...++....+ +.+.+-++++.|||+||.-..
T Consensus 136 ~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 136 LIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred CeEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccc
Confidence 567899999999999888854 344444423344433222 335677999999999988544
No 144
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=92.83 E-value=0.14 Score=53.25 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=39.2
Q ss_pred ccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+..|..+||-|+.|+.+|-++ +.+...-....+... .-+.+.+-++++.|||+||.-..
T Consensus 144 ~i~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~ 211 (797)
T PRK07860 144 QVLLDRERCVLCARCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAA 211 (797)
T ss_pred ceeecccccccCcHHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCcccccccc
Confidence 4678999999999999888654 333333122333322 11224567999999999997443
No 145
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.52 E-value=0.049 Score=55.07 Aligned_cols=66 Identities=29% Similarity=0.555 Sum_probs=42.2
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCC-HHHHHHHHHhCcccccccccchhhhhHH
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGI-NEFVQQAIESCPVDCIHRTSAQQLSLLE 222 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~-~e~i~~Av~~CP~~aI~~~~~~~l~~le 222 (272)
.+.+|...|++|+.|...||. .+.+.++ ........++ ......++..||++||.+.+..++....
T Consensus 79 ~v~~d~~~C~gC~~C~~~CP~~ai~~~~~--~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~~~ 146 (639)
T PRK12809 79 SVQLDEQKCIGCKRCAIACPFGVVEMVDT--IAQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIK 146 (639)
T ss_pred ceecChhhCcchhhHhhhcCCCCEEccCC--CcccccCCcccCCCCChhhhhCccceEEEechHHHHHHH
Confidence 356788999999999999993 4444432 1111111111 1112478999999999998876665443
No 146
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=92.13 E-value=0.015 Score=38.81 Aligned_cols=48 Identities=23% Similarity=0.591 Sum_probs=21.7
Q ss_pred cccccCcccCCCC-cceeecccc---cceEEccCCCCHHHHHHHHHhCcccc
Q 024126 162 SCIGCKNCNNVAP-EVFKIEEDF---GRARVYNQCGINEFVQQAIESCPVDC 209 (272)
Q Consensus 162 ~Cigcg~C~~~ap-~vF~~e~d~---g~a~v~~q~g~~e~i~~Av~~CP~~a 209 (272)
+|+||+.|..++| +.+.+.+.. +...+......-......+..||++|
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 4899999999998 445554321 11111111223345557888999875
No 147
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=91.97 E-value=0.12 Score=49.84 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=33.8
Q ss_pred CccccCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 154 DHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~Cigcg--~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+......|++|+ .|..+||.. ...+++.|... +++ ..+..+..++.+||.+||.+..
T Consensus 174 ~~m~y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~-ID~-dkCiGCg~CV~ACPygAI~~n~ 235 (492)
T TIGR01660 174 TFMMYLPRLCEHCLNPACVASCPSGAIYKREEDGIVL-IDQ-DKCRGWRMCISGCPYKKIYFNW 235 (492)
T ss_pred ceEEECCCcCcCCCcccchhhCccCCeEEecCCCeEE-Eeh-hhccChHHHHHhCCCCCcEecC
Confidence 34455667788887 788888743 22232224322 222 2223456788888888887654
No 148
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=91.95 E-value=0.026 Score=51.99 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=38.9
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCC---CHHHHHHHHHhCcccccccccchh
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g---~~e~i~~Av~~CP~~aI~~~~~~~ 217 (272)
.+.+|...|+||+.|...||. ...++.+.+.+..-.-.. +....-.++.+||++||.+.+.++
T Consensus 156 iV~ID~ekCiGCg~Cv~ACPygAi~~n~~~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGdldd 222 (321)
T TIGR03478 156 IVLVDQERCKGYRYCVEACPYKKVYFNPQSQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGYLDD 222 (321)
T ss_pred eEEECHHHCcchHHHHHhCCCCCcEecCCCCchhhCCCchhhhccCCCCHHHhhcCcccEEEEeCCC
Confidence 456899999999999999993 344443323221111110 001123789999999999866654
No 149
>PRK07118 ferredoxin; Validated
Probab=91.91 E-value=0.062 Score=48.95 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=41.8
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEcc---CC---------CCHHHHHHHHHhCccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYN---QC---------GINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~---q~---------g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+.+|...|++|+.|...|| +.+.+.+......+.- .. .....+...+..||++||.+.+
T Consensus 161 g~~~id~~~C~~Cg~Cv~aCP~~ai~~~~~~~~v~v~c~~~~~g~~~~~~~~~~Ci~Cg~Cv~~CP~~AI~~~~ 234 (280)
T PRK07118 161 GLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMEN 234 (280)
T ss_pred CeEEEChhhCcChhHHHHhcCccceeeeccccceeeeeeccccccccccccccccccchHHHhhCCcCcEEEeC
Confidence 456789999999999999999 6777775433333221 11 1123456789999999999854
No 150
>PRK07118 ferredoxin; Validated
Probab=91.67 E-value=0.1 Score=47.50 Aligned_cols=56 Identities=25% Similarity=0.484 Sum_probs=40.2
Q ss_pred cCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchh
Q 024126 158 VDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~ 217 (272)
++...|++|+.|..+|| +.+.+++ +.+.+- .........+++.||++||.+.....
T Consensus 210 ~~~~~Ci~Cg~Cv~~CP~~AI~~~~--~~~vId--~~~C~~Cg~C~~~CP~~AI~~~~~~~ 266 (280)
T PRK07118 210 VCEVGCIGCGKCVKACPAGAITMEN--NLAVID--QEKCTSCGKCVEKCPTKAIRILNKPP 266 (280)
T ss_pred ccccccccchHHHhhCCcCcEEEeC--CcEEEc--CCcCCCHHHHHHhCCccccEeecccc
Confidence 34677999999999999 5677765 344332 22223456899999999999876643
No 151
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=91.47 E-value=0.068 Score=49.30 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=39.4
Q ss_pred ccccCcccccccCcccCCCCc----ceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~----vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
...+|...|++|+.|...||. .+.+++ +. ..+ .......+..++..||++||....
T Consensus 163 ~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~--~~-~~i-d~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 163 EPQYDADRCIGCGACVKVCKKKAVGALSFEN--YK-VVR-DHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred CCceeCccCCcchHHHHhcChhhcCceeccC--Ce-EEe-CCCcCcCcchhhhhCCHhhcccCc
Confidence 345788899999999999995 233332 32 222 233456778999999999997654
No 152
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=91.30 E-value=0.028 Score=31.66 Aligned_cols=19 Identities=37% Similarity=0.882 Sum_probs=15.1
Q ss_pred ccCcccccccCcccCCCCc
Q 024126 157 FVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~ 175 (272)
.+|...|++||.|...+|.
T Consensus 2 ~id~~~C~~Cg~C~~~CP~ 20 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPF 20 (24)
T ss_dssp EEETTTSSS-THHHHHSTT
T ss_pred EEchHHCCCcchhhhhccc
Confidence 4678889999999988884
No 153
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=91.27 E-value=0.045 Score=49.15 Aligned_cols=54 Identities=20% Similarity=0.450 Sum_probs=34.1
Q ss_pred ccccccCcccCCCC-cceeeccc-----ccceEEccCCCCHHHHH--HHHHhCccccccccc
Q 024126 161 FSCIGCKNCNNVAP-EVFKIEED-----FGRARVYNQCGINEFVQ--QAIESCPVDCIHRTS 214 (272)
Q Consensus 161 ~~Cigcg~C~~~ap-~vF~~e~d-----~g~a~v~~q~g~~e~i~--~Av~~CP~~aI~~~~ 214 (272)
..|++|+.|...|| ++..+... .|...+.........+. .++..||++||.+..
T Consensus 59 ~~Ci~Cg~Cv~aCP~~aI~~~~~~~~~~~g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 59 SACIRCGLCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred hhCcCchHHHHhCCccccCccccccccccCCceeeecCCcCcCCCCCchhhccCccceEeec
Confidence 67999999999998 55554321 12222222222344444 489999999998743
No 154
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=91.27 E-value=0.035 Score=47.04 Aligned_cols=62 Identities=23% Similarity=0.485 Sum_probs=38.0
Q ss_pred CCccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
..-.++|+..|+||..|.+.||---.+-...+.-.|+.. ..--+..++..|||+||++....
T Consensus 107 ~~va~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~d--lCTGC~lCva~CPtdci~m~~~~ 168 (198)
T COG2878 107 RMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIAD--LCTGCDLCVAPCPTDCIEMQPVA 168 (198)
T ss_pred ceeeEecchhccccHHHHHhCChhhhhccchhHHHHHHH--HhcCCCcccCCCCCCceeeeecc
Confidence 445678999999999999999843333211011111111 01113467899999999987654
No 155
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=90.86 E-value=0.15 Score=51.28 Aligned_cols=51 Identities=31% Similarity=0.559 Sum_probs=37.0
Q ss_pred CccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHHhCccccc
Q 024126 154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCI 210 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~--~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI 210 (272)
..+.+|...|++|+.|.. .||. +..++ +.. .++. .+..+-.+++.||++||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~-~~~~~--~~~-~i~~--~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPA-IEPED--KEA-VIDP--LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCC-ccccC--Ccc-eeCC--CCcCHHHHHhhCccccC
Confidence 467889999999999999 8983 22322 332 2332 46677899999999987
No 156
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=90.51 E-value=0.12 Score=55.87 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=39.5
Q ss_pred cccCcccccccCcccCCCCcc-eeec---cc-------------------ccce-EEccCCCCHHHHHHHHHhCccc--c
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV-FKIE---ED-------------------FGRA-RVYNQCGINEFVQQAIESCPVD--C 209 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v-F~~e---~d-------------------~g~a-~v~~q~g~~e~i~~Av~~CP~~--a 209 (272)
+..|...|++|+.|..+||.. +.+. ++ .+.. .+.....++..|..+++.||++ |
T Consensus 678 p~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~A 757 (1165)
T TIGR02176 678 PVWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKA 757 (1165)
T ss_pred ceeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCcc
Confidence 445888899999999999833 2221 00 0000 1111244566788999999994 9
Q ss_pred cccccch
Q 024126 210 IHRTSAQ 216 (272)
Q Consensus 210 I~~~~~~ 216 (272)
|.++...
T Consensus 758 l~m~~~~ 764 (1165)
T TIGR02176 758 LVMQPLA 764 (1165)
T ss_pred ccccchh
Confidence 9987665
No 157
>PRK13795 hypothetical protein; Provisional
Probab=90.27 E-value=0.091 Score=53.20 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=38.4
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
+..+...|++|+.|...|| ..+.++++ .....++ ...+..+..++..||+.+|..
T Consensus 576 ~v~~~~~C~~Cg~C~~~CP~~ai~~~~~-~~~~~id-~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 576 LLRRAAECVGCGVCVGACPTGAIRIEEG-KRKISVD-EEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEEccccCCCHhHHHHhCCcccEEeecC-CceEEec-hhhcCChhHHHhhcCCCeeEe
Confidence 4556788999999999999 44556543 2222222 234556789999999999875
No 158
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=89.86 E-value=0.29 Score=46.49 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=37.6
Q ss_pred CccccCcccccccCccc--CCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~--~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+.++...|++|+.|. .+||.. .+..+ . .++ ...+..+..++..||.+||.+...
T Consensus 295 ~~p~id~dkCi~Cg~C~~~~aCPt~-AI~~~-~---~Id-~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 295 VRPKYNPERCENCDPCLVEEACPVP-AIKKD-G---TLN-TEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred eeEEEchhhCcCCCCCcCCcCCCHh-hEecc-c---eeC-hHhCcChHHHHhhCCccceEEeCC
Confidence 34567888899999995 788843 23222 1 122 223446678999999999998644
No 159
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=89.83 E-value=0.077 Score=51.21 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=37.2
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRT 213 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~ 213 (272)
..+.+|...|+||+.|...|| +.-.++.+.|.+..-.-.. +.+. .++.+||++|+.+-
T Consensus 207 GiV~ID~dkCiGCg~CV~ACPygAI~~n~~~g~~~KCd~C~--~Rie~G~pPaCVeaCP~~Ar~fG 270 (492)
T TIGR01660 207 GIVLIDQDKCRGWRMCISGCPYKKIYFNWKTGKSEKCIFCY--PRIEAGQPTVCSETCVGRIRYLG 270 (492)
T ss_pred CeEEEehhhccChHHHHHhCCCCCcEecCCCCccccCCCCh--hHHhCCCCCcchhhcChhhhhhh
Confidence 345689999999999999999 3333444334332221111 1221 58999999997654
No 160
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=89.52 E-value=0.088 Score=53.78 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=39.8
Q ss_pred CccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+..|..+||.|+.|+.+|-++ +.+...-....+..- .-+.+.+-++++.|||+||.-..
T Consensus 138 p~i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~ 206 (687)
T PRK09130 138 PLVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKP 206 (687)
T ss_pred CcEEEecccCCcccHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccc
Confidence 34677899999999999888654 333332122333221 11235678999999999998544
No 161
>PRK10194 ferredoxin-type protein; Provisional
Probab=88.94 E-value=0.18 Score=41.93 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=29.4
Q ss_pred ccccCcccCCCC-cceeecccc-cceE-EccCCCCHHHHHHHHHhCccccccccc
Q 024126 163 CIGCKNCNNVAP-EVFKIEEDF-GRAR-VYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 163 Cigcg~C~~~ap-~vF~~e~d~-g~a~-v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
|++|+.|...+| +.+.++.+. |... +++ ..........+..||++||.+..
T Consensus 106 ~~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~-~~~C~gCg~C~~~CP~~AI~~~~ 159 (163)
T PRK10194 106 SVECRRCQDSCEPMAIIFRPTLSGIYQPQLN-SQLCNGCGACAASCPVSAITAEY 159 (163)
T ss_pred CCCcCcchhhCCHhHeEeeecCCCcccceeC-cccCcCcchhhhhCCccceEecc
Confidence 378888988888 334444321 2111 111 11123456788899999988644
No 162
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=88.74 E-value=0.21 Score=49.75 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=36.0
Q ss_pred cCccccccc------CcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 158 VDEFSCIGC------KNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 158 vDe~~Cigc------g~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+...|+.| +.|..+||.. +...++ +....++ ......+..++..||++||.++..
T Consensus 501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~-~~~~~i~-~~~C~~Cg~C~~~CP~~Ai~~~~~ 563 (564)
T PRK12771 501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGP-GRRYHFD-YDKCTGCHICADVCPCGAIEMGPG 563 (564)
T ss_pred hhcccCcccccccccchhhhhCChhheeeecC-CceEEEe-cccCcChhHHHhhcCcCceEeccC
Confidence 445556555 8999999854 444332 3222222 334556779999999999998653
No 163
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=88.28 E-value=0.17 Score=51.57 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=47.2
Q ss_pred cCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhh
Q 024126 158 VDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVE 229 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~ 229 (272)
.|...||-|..|+.+|-++ +.+-+..+...+... .-+.+.+-++++.|||+||.-... +...=.|.+.+.+
T Consensus 141 ~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~-~~~ar~wEl~k~~ 219 (693)
T COG1034 141 YDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPF-AFTARKWELKKTP 219 (693)
T ss_pred cccccceechhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccccChH-HhhhccchhccCc
Confidence 7899999999999888655 222222233333332 223367789999999999987776 5554446666544
No 164
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=88.20 E-value=0.18 Score=44.59 Aligned_cols=53 Identities=21% Similarity=0.421 Sum_probs=37.8
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
..+|+..|++|+.|...|| ..+.++++ ... ++ ......+..++..||+++|.-
T Consensus 169 ~~id~~~C~~C~~C~~aCP~~ai~~~~~--~~~-i~-~~~C~~C~~C~~~CP~~~~~~ 222 (228)
T TIGR03294 169 KVVNQGLCMGCGTCAAACPTRAIEMEDG--RPN-VN-RDRCIKCGACYVQCPRAFWPE 222 (228)
T ss_pred EEEChhhCcChhHHHHhCCHhhEEEeCC--cEE-EC-hhhccCHHHHHHHcCCCCcch
Confidence 4578889999999999999 44666543 332 22 223445778999999988764
No 165
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=88.20 E-value=0.24 Score=52.70 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=47.2
Q ss_pred Ccccccc----cCcccCCCCcce--eecc-cc-cceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhh
Q 024126 159 DEFSCIG----CKNCNNVAPEVF--KIEE-DF-GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVER 230 (272)
Q Consensus 159 De~~Cig----cg~C~~~ap~vF--~~e~-d~-g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~ 230 (272)
+...|.+ |+.|..+||..- .++. .+ +....++....+..+..++..||++|+.+... +++++....-...
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk--~~~~~kd~~fy~~ 956 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKDK--LTLFWLEEDFYNS 956 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCcccceee--eeeecchHHHHhc
Confidence 4478996 999999999652 2321 10 11222222223677789999999999998887 4444422222333
Q ss_pred hceeeecCC
Q 024126 231 VNVAMMLSG 239 (272)
Q Consensus 231 ~~v~~~~~g 239 (272)
.|-++.++|
T Consensus 957 sggGvTlsG 965 (1012)
T TIGR03315 957 TNSGFLVED 965 (1012)
T ss_pred cCCcEEEEC
Confidence 344555554
No 166
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=86.99 E-value=0.13 Score=44.91 Aligned_cols=52 Identities=13% Similarity=0.381 Sum_probs=31.7
Q ss_pred ccccccCcccCCCC-cceeecccc-----cceEEccCCCCHHHHH--HHHHhCccccccc
Q 024126 161 FSCIGCKNCNNVAP-EVFKIEEDF-----GRARVYNQCGINEFVQ--QAIESCPVDCIHR 212 (272)
Q Consensus 161 ~~Cigcg~C~~~ap-~vF~~e~d~-----g~a~v~~q~g~~e~i~--~Av~~CP~~aI~~ 212 (272)
..|++|+.|...|| +.+.+.... |.............+. .++..||++||..
T Consensus 53 ~~Ci~Cg~Cv~aCP~~ai~~~~~~~~~~~g~p~~~~~~~~C~~C~d~~Cv~~CP~~Ai~~ 112 (213)
T TIGR00397 53 AACVRCGLCVEACPYDILSLASWSDPAPLGTPFFTPREVPCRMCKDIPCARACPTGALDP 112 (213)
T ss_pred ccccchhHHHHhCCcccccccccccccccCCccccccCCcCCCCCCchHHhHcCHhhhch
Confidence 57999999999998 455554311 2111111112223333 5889999999974
No 167
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=86.96 E-value=0.39 Score=24.74 Aligned_cols=15 Identities=47% Similarity=1.158 Sum_probs=12.9
Q ss_pred ccccccCcccCCCCc
Q 024126 161 FSCIGCKNCNNVAPE 175 (272)
Q Consensus 161 ~~Cigcg~C~~~ap~ 175 (272)
..|++|+.|..++|.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 459999999999984
No 168
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=85.40 E-value=0.39 Score=46.91 Aligned_cols=60 Identities=23% Similarity=0.399 Sum_probs=39.4
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHH
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLE 222 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le 222 (272)
..+|+..|+||+.|.. || +-..++ ++ +++. -...-+-.+..+||.+||.+....+..++.
T Consensus 556 a~vde~~C~gC~~C~~-Cpf~ais~~----ka-~v~~-~~C~gCG~C~~aCp~gai~~~~f~~eqi~a 616 (622)
T COG1148 556 ATVDEDKCTGCGICAE-CPFGAISVD----KA-EVNP-LRCKGCGICSAACPSGAIDLAGFSDEQILA 616 (622)
T ss_pred cccchhhhcCCcceee-CCCCceecc----cc-ccCh-hhhCcccchhhhCCcccchhcccCHHHHHH
Confidence 4679999999999999 88 333332 12 2211 112233478899999999987776655553
No 169
>PF13446 RPT: A repeated domain in UCH-protein
Probab=84.87 E-value=1.7 Score=30.01 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHH
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMK 96 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~ 96 (272)
.+.|++|||+++.+.+.|..+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
No 170
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=84.25 E-value=0.7 Score=31.85 Aligned_cols=19 Identities=47% Similarity=0.901 Sum_probs=12.8
Q ss_pred cccCcccccccCcccCCCC
Q 024126 156 VFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap 174 (272)
+.++...|+||+.|..++|
T Consensus 34 ~~v~~~~C~GCg~C~~~CP 52 (59)
T PF14697_consen 34 VPVNPDKCIGCGLCVKVCP 52 (59)
T ss_dssp SECE-TT--S-SCCCCCSS
T ss_pred EEeccccCcCcCcccccCC
Confidence 4566788999999999999
No 171
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=84.20 E-value=0.24 Score=41.88 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=27.7
Q ss_pred cccccC--cccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 162 SCIGCK--NCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 162 ~Cigcg--~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.|.+|+ .|..++|......++ |...+ + ..........+..||.+||.+...
T Consensus 57 ~C~~C~~~~C~~~Cp~~ai~~~~-~~v~i-~-~~~C~~C~~C~~~CP~~ai~~~~~ 109 (181)
T PRK10330 57 VCRQCEDAPCANVCPNGAISRDK-GFVHV-M-QERCIGCKTCVVACPYGAMEVVVR 109 (181)
T ss_pred cCcCcCCcHHHHHcCcccEEccC-CeEEe-C-hhhCCCcchhhhhCCccCeEeecc
Confidence 566676 666677643211122 44322 1 222345667778888888876543
No 172
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=83.88 E-value=1.1 Score=41.51 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=39.8
Q ss_pred CCccccCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 153 KDHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg--~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...++.....|..|. .|..+||.. +...++.|... +++ .....+..++.+||.+||.+...
T Consensus 121 ~~~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~-ID~-ekCiGCg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 121 NNYYFYLPRICNHCTNPACLAACPTGAIYKREEDGIVL-VDQ-ERCKGYRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred CceEEEecccCCCCCCccchhhCCcCcEEEecCCCeEE-ECH-HHCcchHHHHHhCCCCCcEecCC
Confidence 334556777899999 799999943 32233325432 322 22345678999999999997654
No 173
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=83.12 E-value=0.5 Score=36.05 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.6
Q ss_pred CCccccCcccccccCcccCCCCcc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~v 176 (272)
.+.+.+|...|++||.|..+|+..
T Consensus 53 ~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 53 DGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred CCCEEEcCCCCCcchhhhhhcCCC
Confidence 467889999999999999999644
No 174
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=82.85 E-value=0.52 Score=46.09 Aligned_cols=66 Identities=21% Similarity=0.372 Sum_probs=41.6
Q ss_pred ccccCcccccccCcccCCCCcc--eeecccccceEEc----cC------CCCH---HHHHHHHHhCcccccccccchhhh
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV--FKIEEDFGRARVY----NQ------CGIN---EFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v--F~~e~d~g~a~v~----~q------~g~~---e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
.-+|| ..|.|||.|..+||-. -+++...|..+.+ .| .-|. -.+..+..+||..+|.+...++.-
T Consensus 219 pryVd-d~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~v 297 (622)
T COG1148 219 PRYVD-DKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEV 297 (622)
T ss_pred ccccc-ccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCCcEE
Confidence 34778 8899999999999843 2223322332222 22 1122 355678999999999988777544
Q ss_pred hH
Q 024126 220 LL 221 (272)
Q Consensus 220 ~l 221 (272)
.+
T Consensus 298 e~ 299 (622)
T COG1148 298 EL 299 (622)
T ss_pred EE
Confidence 33
No 175
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=82.54 E-value=3.2 Score=35.80 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024126 79 LPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 79 ~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd 125 (272)
+++|+.|||++|+.++..+|--| ++.-..|..||+.+.=
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM 39 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILM 39 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHH
Confidence 47899999999999999999322 3444679999998653
No 176
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=82.17 E-value=0.44 Score=51.25 Aligned_cols=54 Identities=31% Similarity=0.615 Sum_probs=39.5
Q ss_pred CCccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHH-hCcc
Q 024126 153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV 207 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~--~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~-~CP~ 207 (272)
...+++|+..|.|||.|.. -||.+.-.+.+||+.+.++|. .+..+..|+. -||.
T Consensus 649 ~~r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idqs-~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 649 ARRVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQS-SCNKDFSCVKGFCPS 705 (1186)
T ss_pred CccEEEcccccCCchhhhhccCCceeeeccccCCccEEECHh-HCCCccccccCCCCC
Confidence 3578999999999999965 477777677778987777761 1233446676 8995
No 177
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=81.66 E-value=0.39 Score=43.47 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=36.6
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...+|...|+.||.|..+|+-. -...+ |..-+++ ..-.+-+-.+.-.||.+||..++.
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~~~--~~~~~~~-~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVVLP--GGKPVLN-PDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEEcC--CCceecC-cccccCcccceeeCCCcccccccc
Confidence 4567888899999999999732 22212 1222222 122344557888999999987655
No 178
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=1.9 Score=39.93 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126 81 DATPEQIKKAYYNCMKACHPDLSGD----DPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 81 ~a~~~~Ik~ayr~l~~~~HPD~~~~----~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
.++..+|..+|+...+..||++... .....+.++.|.+||.+|++...|..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 3577889999999999999998742 124577889999999999986665566554
No 179
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=80.23 E-value=4.6 Score=31.69 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCchHH----HHHHHHHHHHHHHhcCc
Q 024126 81 DATPEQIKKAYYNCMKACHPDLSGDDPET----TNFCMFINEVYAVLSDP 126 (272)
Q Consensus 81 ~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~----~~~~~~i~~Ay~vLsd~ 126 (272)
..+..+++.|.|..-++.|||..+..|+. ++-++.|+.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999998876652 34455666666666654
No 180
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=79.63 E-value=0.85 Score=45.66 Aligned_cols=58 Identities=24% Similarity=0.445 Sum_probs=37.7
Q ss_pred ccccCcccccccCccc--CCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~--~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+||+..|.||+.|. .-||-++-.++ + +.+.+++. .+.-+-.+++.||..+|.-+..
T Consensus 571 ~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~-~k~~id~~-~C~GCg~C~~iCP~~a~~~~~~ 630 (640)
T COG4231 571 KYFVDEEKCTGCGDCIVLSGCPSIEPDPT-F-KKARIDPS-SCNGCGSCVEVCPSFAIKEGGE 630 (640)
T ss_pred CceechhhcCCcHHHHhhcCCceEeecCC-C-Cceeeccc-ccccchhhhhcCchhheecccc
Confidence 3789999999999996 33676665554 2 34445441 1223335566699999986544
No 181
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=78.95 E-value=0.88 Score=39.72 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=36.5
Q ss_pred cccCccccc-----ccCcccCCCCc---ceeecccc---cc-eEEccCCCCHHHHHHHHHhCccc--ccccccc
Q 024126 156 VFVDEFSCI-----GCKNCNNVAPE---VFKIEEDF---GR-ARVYNQCGINEFVQQAIESCPVD--CIHRTSA 215 (272)
Q Consensus 156 v~vDe~~Ci-----gcg~C~~~ap~---vF~~e~d~---g~-a~v~~q~g~~e~i~~Av~~CP~~--aI~~~~~ 215 (272)
+.+|...|+ +|+.|...||. ...++... +. .......+....+-.++..||+. ||.+...
T Consensus 126 v~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 126 VLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred EEECCCCcccCCCCCcccchhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEeeh
Confidence 456778887 99999999995 33343210 10 01111122334556899999987 7776554
No 182
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=78.68 E-value=0.36 Score=48.95 Aligned_cols=52 Identities=13% Similarity=0.279 Sum_probs=27.4
Q ss_pred cccccccCc--ccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 160 EFSCIGCKN--CNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 160 e~~Cigcg~--C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...|+.|+. |...||.. +.. +.+... ++ ......+..++..||.++|.+...
T Consensus 53 ~~~C~~C~~~~C~~~CP~~ai~~--~~~~~~-id-~~~C~~C~~C~~~CP~~ai~~~~~ 107 (654)
T PRK12769 53 AVTCHHCEDAPCARSCPNGAISH--VDDSIQ-VN-QQKCIGCKSCVVACPFGTMQIVLT 107 (654)
T ss_pred CccCCCCCChhHhhhCCccceec--cCCeEE-Ee-cccccCcChhcccCCccCeeeccc
Confidence 345666664 66666633 222 114322 22 222334557778888888776543
No 183
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=78.68 E-value=0.63 Score=50.07 Aligned_cols=54 Identities=30% Similarity=0.573 Sum_probs=38.9
Q ss_pred CCccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHH-hCcc
Q 024126 153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV 207 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~--~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~-~CP~ 207 (272)
...+++|+..|.|||.|.. -||.+--.+.+||+.+.++|. .+..+-.|+. -||.
T Consensus 635 ~~r~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Idqs-~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 635 AKRVFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRIDQS-SCNKDFSCLKGFCPS 691 (1165)
T ss_pred CceEEEcccccCCchhhhhccCCcceeeccccCCccEEECHh-HCCCccccccCCCCC
Confidence 3478999999999999965 477776667678887777761 1233446666 8994
No 184
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=78.08 E-value=4.6 Score=41.64 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=32.3
Q ss_pred cCcccccccCcccCCCCcceeecccc-----cceEEc-cCCCCHHHHHHHHHhCcccc
Q 024126 158 VDEFSCIGCKNCNNVAPEVFKIEEDF-----GRARVY-NQCGINEFVQQAIESCPVDC 209 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~vF~~e~d~-----g~a~v~-~q~g~~e~i~~Av~~CP~~a 209 (272)
.+...|++|+.|...||..+.+.+.. |....+ .....+..+..+.+.||+++
T Consensus 362 ~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 362 ELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HhhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 34567999999999999765432110 111001 11234456778999999876
No 185
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=76.54 E-value=1.3 Score=39.51 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=35.4
Q ss_pred cccccccCc--ccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 160 EFSCIGCKN--CNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 160 e~~Cigcg~--C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...|++|+. |..+||.. +..+++ |.. +++. .....+..++..||.+||.+...
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~~~~-G~v-~id~-~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQRED-GIV-VVDN-KRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred chhcCCcCCccCccccCCCCEEECCC-CCE-EEcH-HHCCCHHHHHHhcCCCCCEEeCC
Confidence 567999997 99999943 333333 543 2322 12234678999999999998664
No 186
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=76.35 E-value=0.76 Score=42.93 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=33.6
Q ss_pred cccCcccccccCcccCCCCc-ceeecccccce-----EEc---cCCCCHHHHHHHHHhCccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRA-----RVY---NQCGINEFVQQAIESCPVDCI 210 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a-----~v~---~q~g~~e~i~~Av~~CP~~aI 210 (272)
..+|...|++|+.|..+||. .+.++++.... ..+ ........+..+...||...+
T Consensus 7 ~vi~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 7 EVIEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred cEECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 35788899999999999993 45555431100 000 012233455678999998554
No 187
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=75.64 E-value=1.5 Score=39.96 Aligned_cols=56 Identities=14% Similarity=0.359 Sum_probs=37.3
Q ss_pred ccCcccccccCc--ccCCCCc-c-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 157 FVDEFSCIGCKN--CNNVAPE-V-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~Cigcg~--C~~~ap~-v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+....|.+|+. |..+||. . +..+++ |... +++ .....+..++..||.++|.+...
T Consensus 87 ~~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~-G~V~-id~-dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 87 LIRKDGCMHCREPGCLKACPAPGAIIQYQN-GIVD-FDH-SKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred EECCccCCCCCCccccCCCCcCCeEEEcCC-CcEE-EeH-HHCCcchHHHhhCCCCCcEEcCC
Confidence 345566999998 9999995 3 444443 5432 322 11224568999999999998654
No 188
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=75.36 E-value=1.9 Score=39.72 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=39.2
Q ss_pred CCccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccc--cccc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH--RTSA 215 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~--~~~~ 215 (272)
...+.+++++|..|+.|...||-.- |....+ +.-..+.+..+..+.++||.+++. |++.
T Consensus 185 ~~~p~v~e~kc~~c~~cv~~cp~~A-i~~~~~---~~I~~~~ci~c~~c~~ac~~gav~~~W~~~ 245 (354)
T COG2768 185 DEKPVVVEEKCYDCGLCVKICPVGA-ITLTKV---VKIDYEKCIGCGQCMEACPYGAVDQNWEED 245 (354)
T ss_pred ccCceeeeecccccchhhhhCCCcc-eecccc---eeechhhccchhhhhhhccCcccccchhhc
Confidence 3456789999999999999998431 211101 111233445677899999999987 5444
No 189
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=74.96 E-value=1.8 Score=46.21 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=47.4
Q ss_pred cccCccccccc----CcccCCCCcc--eeec-----ccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHH
Q 024126 156 VFVDEFSCIGC----KNCNNVAPEV--FKIE-----EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDE 224 (272)
Q Consensus 156 v~vDe~~Cigc----g~C~~~ap~v--F~~e-----~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~ 224 (272)
+..+...|.+| +.|..+||.- ..++ ..++.+. + .+.+..+-.++..||+++=...+.-.|=+.|+-
T Consensus 881 ~~~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~-~--~~~C~~CG~C~~~CP~~~~py~dk~t~f~~~~d 957 (1019)
T PRK09853 881 VAQEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVH-L--DAMCNECGNCAQFCPWNGKPYKDKITLFSLEED 957 (1019)
T ss_pred ccccccccCCcccccchhhhhCCcccccccccCCcccCCceEE-c--CccCccccchhhhCCCCCCcccccceEEcchhh
Confidence 34567789999 9999999954 2332 1122222 2 344566779999999999888888777777766
Q ss_pred Hhh
Q 024126 225 MRR 227 (272)
Q Consensus 225 ~~~ 227 (272)
|..
T Consensus 958 ~~~ 960 (1019)
T PRK09853 958 FEN 960 (1019)
T ss_pred hhc
Confidence 644
No 190
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=74.85 E-value=1.1 Score=33.78 Aligned_cols=22 Identities=36% Similarity=0.783 Sum_probs=18.3
Q ss_pred cCcccccccCcccCCCCc-ceee
Q 024126 158 VDEFSCIGCKNCNNVAPE-VFKI 179 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~-vF~~ 179 (272)
+|-..|-|||.|+.+||. -..|
T Consensus 63 idYdyCKGCGICa~vCP~kaI~M 85 (91)
T COG1144 63 IDYDYCKGCGICANVCPVKAIEM 85 (91)
T ss_pred eEcccccCceechhhCChhheEe
Confidence 788899999999999995 3444
No 191
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=74.04 E-value=0.99 Score=48.70 Aligned_cols=54 Identities=28% Similarity=0.540 Sum_probs=37.4
Q ss_pred CCccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHH-hCcc
Q 024126 153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV 207 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~--~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~-~CP~ 207 (272)
...+++|+..|.|||.|.. -||.+-..+.++|+.+.++|. .+..+-.|+. -||.
T Consensus 621 ~~~~~In~~vCegCg~C~~~s~C~ai~~~~t~~grK~~Id~s-~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 621 DRRLFINEAVCEGCGDCGVQSNCLSVEPVETPFGRKRRIDQS-SCNKDFSCVNGFCPS 677 (1159)
T ss_pred CeeEEEcccccCCchhhhhccCCcceeeccccCCccEEECHH-HCCCccccccCCCCC
Confidence 3478999999999999965 467776666667876667651 1233345666 8883
No 192
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=73.73 E-value=0.98 Score=45.88 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=29.7
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCI 210 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI 210 (272)
.+..|..+||.||.|..+|.++= |. ..-.+..+...||++|+
T Consensus 610 ~i~~D~~kCI~CgrCv~~C~ev~------~~--------~~~~~~~~~~~~~~~~~ 651 (652)
T PRK12814 610 DIRFEREKCVDCGICVRTLEEYG------AE--------GNTDIEVLAESCPTGAL 651 (652)
T ss_pred CeEeccccccCchHHHHHHHHhc------cc--------chhhhhhhhccCCcccC
Confidence 47889999999999999998651 11 11223345566999986
No 193
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=72.91 E-value=0.89 Score=40.80 Aligned_cols=57 Identities=19% Similarity=0.428 Sum_probs=36.0
Q ss_pred ccCccccc-----ccCcccCCCCc---ceeeccc----ccc----eEEccCCCCHHHHHHHHHhCccc--cccccc
Q 024126 157 FVDEFSCI-----GCKNCNNVAPE---VFKIEED----FGR----ARVYNQCGINEFVQQAIESCPVD--CIHRTS 214 (272)
Q Consensus 157 ~vDe~~Ci-----gcg~C~~~ap~---vF~~e~d----~g~----a~v~~q~g~~e~i~~Av~~CP~~--aI~~~~ 214 (272)
.+|...|+ +|+.|..+||. .+.++.. .|. .-+++. ....-+..++..||++ ||.+..
T Consensus 133 ~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~-d~C~gCG~C~~aCP~~~~AI~v~p 207 (254)
T PRK09476 133 LVDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHS-DACTGCGKCEKACVLEKAAIKVLP 207 (254)
T ss_pred ecchhhccccCCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeH-HHCcCcChhhHhcCCCcceEEEeh
Confidence 47888898 89999999993 4555431 111 011211 1223456899999998 887543
No 194
>PRK09898 hypothetical protein; Provisional
Probab=72.64 E-value=1.7 Score=37.60 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=37.4
Q ss_pred cccCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 156 VFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~Cigcg--~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+.++...|..|+ .|..+||.. +..++++|... ++. .....+..++..||.++|.+..
T Consensus 116 ~~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v~-vd~-~~CigC~~C~~aCP~~ai~~~~ 175 (208)
T PRK09898 116 LNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCIT-VDH-KRCIGCSACTTACPWMMATVNT 175 (208)
T ss_pred EEEeCccCCCccCcchhhhCCcceEEeeccCCeEE-ecc-ccCCCcCcccccCCCCCCEecC
Confidence 345677899998 899999943 45554445433 322 2223456788999999997643
No 195
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=69.80 E-value=1.9 Score=30.70 Aligned_cols=21 Identities=38% Similarity=0.860 Sum_probs=16.8
Q ss_pred CcccccccCcccCCCCcceee
Q 024126 159 DEFSCIGCKNCNNVAPEVFKI 179 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~vF~~ 179 (272)
....|+|||.|..++|....|
T Consensus 48 ~~~~CVgCgrCv~~CP~~Idi 68 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAGIDI 68 (69)
T ss_pred CCccCCCcChHhhhcCCCCCc
Confidence 456699999999999976443
No 196
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=67.37 E-value=2.5 Score=34.89 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=36.1
Q ss_pred cCcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 158 VDEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 158 vDe~~Cigcg--~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.....|++|+ .|..++|. .+..+.+.|... ++. .........+..||.++|.+...
T Consensus 59 ~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~~~-i~~-~~C~~C~~C~~aCP~~ai~~~~~ 117 (161)
T TIGR02951 59 YISISCNHCADPACVKNCPTGAMYKREEDGLVL-VDQ-DKCIGCRYCVWACPYGAPQYDPQ 117 (161)
T ss_pred EcCccCCCcCCcchHHhCCCCCEEeecCCCcEE-ECH-HhCCCchHHHhhCCCCCcEEcCC
Confidence 4467799999 89999994 344432224332 221 12234568999999999998654
No 197
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=66.54 E-value=2.4 Score=42.51 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=21.6
Q ss_pred CCccccCcccccccCcccCCCCccee
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPEVFK 178 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~vF~ 178 (272)
.....+|+..|+||+.|.++||-.+.
T Consensus 600 ~~k~~id~~~C~GCg~C~~iCP~~a~ 625 (640)
T COG4231 600 FKKARIDPSSCNGCGSCVEVCPSFAI 625 (640)
T ss_pred CCceeecccccccchhhhhcCchhhe
Confidence 36778899999999999999985433
No 198
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=65.67 E-value=3.1 Score=35.17 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCCccccCcccccccCcccCCCCcc
Q 024126 152 PKDHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 152 ~~~~v~vDe~~Cigcg~C~~~ap~v 176 (272)
......+|-..||.||.|.++||..
T Consensus 86 ~~~~~~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 86 KPKRPDINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred ccccceeccccccccCchhhhCchh
Confidence 3445678999999999999999843
No 199
>PRK13409 putative ATPase RIL; Provisional
Probab=65.56 E-value=2.9 Score=42.04 Aligned_cols=21 Identities=33% Similarity=0.736 Sum_probs=18.3
Q ss_pred CccccCcccccccCcccCCCC
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap 174 (272)
....+.|..|+|||.|+.-||
T Consensus 42 ~~~~~~e~~c~~c~~c~~~cp 62 (590)
T PRK13409 42 GKPVISEELCIGCGICVKKCP 62 (590)
T ss_pred CCceeeHhhccccccccccCC
Confidence 456778899999999999998
No 200
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=64.01 E-value=11 Score=35.62 Aligned_cols=85 Identities=18% Similarity=0.352 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHH-------hCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccccccccCCCCCCCCCCCCcc
Q 024126 84 PEQIKKAYYNCMKA-------CHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHV 156 (272)
Q Consensus 84 ~~~Ik~ayr~l~~~-------~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~~~~~~~~~~~~~~~~~v 156 (272)
.++|+++|++.+.. |-| .++.-..-+.|...|.++..-.-...|..|....+ ..-|+.+.
T Consensus 280 l~~v~~~~~~~~~v~Ct~C~yC~P--CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~-----~~~~~~~~------ 346 (391)
T COG1453 280 LEKVEEIYRESLKVPCTGCRYCLP--CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLEN-----GGHWFPGP------ 346 (391)
T ss_pred HHHHHHHHHHHhcCCCccccccCc--CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhc-----cCccCCCC------
Confidence 45678888887654 333 23333456777778877765444445666665422 11122211
Q ss_pred ccCcccccccCcccCCCCcceeecc
Q 024126 157 FVDEFSCIGCKNCNNVAPEVFKIEE 181 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~vF~~e~ 181 (272)
.-+...|++||.|...||..-.|.+
T Consensus 347 ~g~as~CieCgqCl~~CPq~l~Ip~ 371 (391)
T COG1453 347 KGKASDCIECGQCLEKCPQHLDIPE 371 (391)
T ss_pred cccccccchhhhhhhcCCCcCcHHH
Confidence 2244569999999999998876643
No 201
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.83 E-value=12 Score=29.94 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=34.2
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD 105 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~ 105 (272)
+.-..--+||+|+...+.++|.+.|..|-....+.+.++
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 455677899999999999999999999999998877776
No 202
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=63.56 E-value=6.9 Score=40.55 Aligned_cols=53 Identities=17% Similarity=0.429 Sum_probs=33.4
Q ss_pred cccCcccccccCcccCCCCcceeecccc-----cc-eEEccCCCCHHHHHHHHHhCccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDF-----GR-ARVYNQCGINEFVQQAIESCPVD 208 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~e~d~-----g~-a~v~~q~g~~e~i~~Av~~CP~~ 208 (272)
+......|++|+.|...||..+.+.+.. |. ..+......+..+..+.+.||.+
T Consensus 394 Ll~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 394 LMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCC
Confidence 3445678999999999999765432210 21 11111123456788999999985
No 203
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=61.63 E-value=4.6 Score=33.92 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCccccCcccccccCcccCCCC-cceeecccc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDF 183 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~ 183 (272)
--+..+|-..||.||.|...|| +-..+.+.|
T Consensus 142 ttrYdIDmtkCIyCG~CqEaCPvdaivegpnf 173 (212)
T KOG3256|consen 142 TTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 173 (212)
T ss_pred ceeecccceeeeeecchhhhCCccceeccCCc
Confidence 3445689999999999999998 333333333
No 204
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=60.91 E-value=4.7 Score=36.62 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=19.2
Q ss_pred CccccCcccccccCcccCCCCcc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~v 176 (272)
....+|+..|.|||.|..+||..
T Consensus 92 ~~~~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 92 GKPVLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred CceecCcccccCcccceeeCCCc
Confidence 34456889999999999999966
No 205
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=59.59 E-value=1.9 Score=21.48 Aligned_cols=12 Identities=50% Similarity=1.367 Sum_probs=6.2
Q ss_pred ccccCcccCCCC
Q 024126 163 CIGCKNCNNVAP 174 (272)
Q Consensus 163 Cigcg~C~~~ap 174 (272)
|++|+.|..++|
T Consensus 1 C~~C~~C~~~Cp 12 (15)
T PF12798_consen 1 CTGCGACVEVCP 12 (15)
T ss_pred CCCchHHHHHhc
Confidence 445555555554
No 206
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=59.53 E-value=5.4 Score=38.64 Aligned_cols=52 Identities=27% Similarity=0.588 Sum_probs=31.5
Q ss_pred ccCcccccccCcccCCCCcceeeccc-cc----ce--EEc-----------cCCCCHHHHHHHHHhCccc
Q 024126 157 FVDEFSCIGCKNCNNVAPEVFKIEED-FG----RA--RVY-----------NQCGINEFVQQAIESCPVD 208 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~vF~~e~d-~g----~a--~v~-----------~q~g~~e~i~~Av~~CP~~ 208 (272)
+.+...|+.||.|..+||-.-.+... || .. .+. .....+..+..+.+.||++
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVK 358 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCC
Confidence 44577899999999999955333211 11 00 000 0123456778999999984
No 207
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=59.51 E-value=3.4 Score=38.18 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=8.5
Q ss_pred CCcCCcccccCcCC
Q 024126 67 AIADDYYAVLGLLP 80 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~ 80 (272)
...+.=++|+|+++
T Consensus 64 iT~rqg~ei~~i~~ 77 (317)
T COG2221 64 ITSRQGLEIPGISP 77 (317)
T ss_pred EEecCceEeccCCH
Confidence 34556677777644
No 208
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=58.85 E-value=1.6 Score=44.74 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=29.6
Q ss_pred CcccccccCcccCCCCccee-e-------cccccceEEccCCCCHHHHHHHHHhCccc
Q 024126 159 DEFSCIGCKNCNNVAPEVFK-I-------EEDFGRARVYNQCGINEFVQQAIESCPVD 208 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~vF~-~-------e~d~g~a~v~~q~g~~e~i~~Av~~CP~~ 208 (272)
++..||+||.|..+||..-. + ..++.....+ ...++..+-.+...||.+
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~-~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEY-NLFDCIECGACAYVCPSN 424 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhc-ChhhccccCcccccCCCC
Confidence 66889999999999994321 1 1222222111 122344566788999986
No 209
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=58.76 E-value=4.4 Score=28.00 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=14.6
Q ss_pred HHHHHHhCcccccccccc
Q 024126 198 VQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 198 i~~Av~~CP~~aI~~~~~ 215 (272)
....++.||++||.....
T Consensus 5 C~~C~~~CP~~AI~~~~~ 22 (67)
T PF13484_consen 5 CGKCAEACPTGAISGEDE 22 (67)
T ss_pred hhHHHHhCcHhhccCCCc
Confidence 456889999999998844
No 210
>COG1146 Ferredoxin [Energy production and conversion]
Probab=58.15 E-value=4.5 Score=28.29 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.1
Q ss_pred CCccccCcccccccCcccCCCCcc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~v 176 (272)
...+.++...|++|+.|...+|..
T Consensus 33 ~~~~~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 33 GKPVVARPEECIDCGLCELACPVG 56 (68)
T ss_pred cceeEeccccCccchhhhhhCCcc
Confidence 344677888899999999999966
No 211
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=57.38 E-value=3.9 Score=40.00 Aligned_cols=18 Identities=39% Similarity=0.879 Sum_probs=16.3
Q ss_pred ccCcccccccCcccCCCC
Q 024126 157 FVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap 174 (272)
.+.+..|+|||.|..-||
T Consensus 46 vIsE~lCiGCGICvkkCP 63 (591)
T COG1245 46 VISEELCIGCGICVKKCP 63 (591)
T ss_pred eeEhhhhccchhhhccCC
Confidence 667888999999999998
No 212
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=56.09 E-value=4 Score=30.02 Aligned_cols=19 Identities=37% Similarity=0.947 Sum_probs=16.7
Q ss_pred ccCcccccccCcccCCCCc
Q 024126 157 FVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~ 175 (272)
.+|...|++|+.|..+||.
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~ 84 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPK 84 (91)
T ss_pred ecCCccCcChhhhhhhCCH
Confidence 4688889999999999994
No 213
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=55.59 E-value=5.5 Score=33.86 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=31.0
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHH--HHHHHhCcccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFV--QQAIESCPVDCIH 211 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i--~~Av~~CP~~aI~ 211 (272)
+.+|...|++||.|..+|| +...+.+++..+. .+..+.+ ..++..+|...+.
T Consensus 97 ~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~~----~~r~~l~~~~~~l~~~p~~~~~ 151 (183)
T TIGR00403 97 YSIDFGVCIFCGNCVEYCPTNCLSMTEEYELST----YDRHELNYDQIALGRLPISITE 151 (183)
T ss_pred eecCcccccCcCchhhhcCCCCeeccccccccc----ccHHHHhccHHHhcCCCeeeec
Confidence 3467778999999999999 4456655543221 1111222 2345677866554
No 214
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=54.74 E-value=5.4 Score=39.02 Aligned_cols=58 Identities=28% Similarity=0.498 Sum_probs=37.4
Q ss_pred ccCcccccc--c-CcccCCCCcc------eeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 157 FVDEFSCIG--C-KNCNNVAPEV------FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cig--c-g~C~~~ap~v------F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
.+|...|.. | ..|...||-+ ..++++.|+. ++.+ .-+--|--++.-||.+||.++.-+
T Consensus 7 vvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkp-vIsE-~lCiGCGICvkkCPF~AI~IvnLP 73 (591)
T COG1245 7 VVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKP-VISE-ELCIGCGICVKKCPFDAISIVNLP 73 (591)
T ss_pred EeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCc-eeEh-hhhccchhhhccCCcceEEEecCc
Confidence 467777743 3 5777788743 5566655665 2322 112235588999999999998865
No 215
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.99 E-value=7.1 Score=39.59 Aligned_cols=54 Identities=13% Similarity=0.367 Sum_probs=36.4
Q ss_pred cCcccccccCc--ccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 158 VDEFSCIGCKN--CNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 158 vDe~~Cigcg~--C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+...|..|+. |...|| ..+.+++ +.. .+. ......+..++..||.++|.+.+.
T Consensus 51 ~~~~~C~~C~~~~C~~~CP~~ai~~~~--~~v-~~d-~~~C~gC~~C~~~CP~~ai~~~~~ 107 (639)
T PRK12809 51 ANPVACHHCNNAPCVTACPVNALTFQS--DSV-QLD-EQKCIGCKRCAIACPFGVVEMVDT 107 (639)
T ss_pred ccCCCCcCcCChhHHhhCCcCceeccc--cce-ecC-hhhCcchhhHhhhcCCCCEEccCC
Confidence 35677999997 999999 3454443 322 222 222345778999999999987653
No 216
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=51.12 E-value=6.5 Score=36.68 Aligned_cols=53 Identities=19% Similarity=0.444 Sum_probs=34.8
Q ss_pred CcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126 159 DEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 159 De~~Cigcg--~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
....|..|+ .|..+||. .+..+++.|.. .+++ .....+..++..||.++|.+.
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~V-~id~-dkCigCg~Cv~aCP~gai~~~ 163 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIV-HYDK-DVCTGCRYCMVACPFNVPKYD 163 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEecccCCcc-cCCH-HHcCcccHHHHhCCccceecc
Confidence 345699998 89999994 45554432432 2222 222346789999999999864
No 217
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=50.10 E-value=6.2 Score=37.00 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=19.4
Q ss_pred CccccCcccccccCcccCCCCc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~ 175 (272)
..+.+|...|++||.|...||.
T Consensus 207 ~~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 207 KSLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred CceeeccccCCcCCchHHhCch
Confidence 4578899999999999999984
No 218
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=48.85 E-value=19 Score=27.36 Aligned_cols=16 Identities=13% Similarity=0.505 Sum_probs=7.7
Q ss_pred HHHHHHHhCccccccc
Q 024126 197 FVQQAIESCPVDCIHR 212 (272)
Q Consensus 197 ~i~~Av~~CP~~aI~~ 212 (272)
....++.+||++||..
T Consensus 35 ~~k~C~~aCPagA~~~ 50 (95)
T PRK15449 35 ALELLVKACPAGLYKK 50 (95)
T ss_pred hhhHHHHHCCHhhcEe
Confidence 3344555555555543
No 219
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=48.71 E-value=8.7 Score=32.05 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=20.2
Q ss_pred cccCcccccccCcccCCCCc-ceeeccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE-VFKIEED 182 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~-vF~~e~d 182 (272)
+.+|...|++|+.|..+||. ...+...
T Consensus 94 ~~id~~~C~~Cg~C~~~CP~~AI~~~~~ 121 (167)
T CHL00014 94 YSIDFGVCIFCGNCVEYCPTNCLSMTEE 121 (167)
T ss_pred ccCCCCcCcCccchHhhcCcCceecCCc
Confidence 34566789999999999994 4555543
No 220
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=48.55 E-value=8.8 Score=29.89 Aligned_cols=26 Identities=19% Similarity=0.508 Sum_probs=19.9
Q ss_pred ccCcccccccCcccCCCC-cceeeccc
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEED 182 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d 182 (272)
.++...|++|+.|..+|| +.+.+...
T Consensus 78 ~~~~~~C~~Cg~Cv~~CP~~al~~~~~ 104 (122)
T TIGR01971 78 QINFGRCIFCGLCEEACPTDAIVLTPE 104 (122)
T ss_pred eECcccCCCCCchhhhCCCccccccce
Confidence 456777999999999999 44666554
No 221
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=47.33 E-value=7.7 Score=30.35 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=20.6
Q ss_pred cccCcccccccCcccCCCC-cceeeccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEED 182 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d 182 (272)
+.++...|++|+.|..+|| +.+.+.++
T Consensus 68 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 68 VALWTGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred eEecCCcCcChhhhHHhCCcCcEEeccc
Confidence 3456678999999999999 55666554
No 222
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=45.82 E-value=11 Score=31.12 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.8
Q ss_pred ccCcccccccCcccCCCC-cceeeccc
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEED 182 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d 182 (272)
.+|...|++|+.|..+|| +...+...
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 119 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPTDAIVETPD 119 (164)
T ss_pred ecCCCcCcccCcchhhcCcCcceecCc
Confidence 467788999999999999 44445443
No 223
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=44.15 E-value=8.1 Score=36.22 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=28.2
Q ss_pred ccccCcccCCCCcc-eeeccc--ccceEEccCCCCHHHHHHHHHhCcccccc
Q 024126 163 CIGCKNCNNVAPEV-FKIEED--FGRARVYNQCGINEFVQQAIESCPVDCIH 211 (272)
Q Consensus 163 Cigcg~C~~~ap~v-F~~e~d--~g~a~v~~q~g~~e~i~~Av~~CP~~aI~ 211 (272)
|++|+.|...||.- -.++++ .+.. ++ ....+-.+..++..||..||.
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~~~~~~-~i-d~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDGKNKSL-EV-DVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred hcCCCceEeeCchhhceecccCCCCce-ee-ccccCCcCCchHHhCchhhcc
Confidence 44568888888833 444322 1332 22 233345566888999999886
No 224
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=43.76 E-value=89 Score=22.72 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=24.4
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHh
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKAC 98 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~ 98 (272)
+|--+++|+++-++..||+.|-++..++.
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKl 31 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKL 31 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence 45667899999999999999987777775
No 225
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=42.22 E-value=15 Score=31.13 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=20.9
Q ss_pred ccCcccccccCcccCCCC-cceeeccccc
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFG 184 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g 184 (272)
.++...|++||.|..+|| +...+.+++.
T Consensus 69 ~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~ 97 (181)
T PRK08222 69 QLYLGRCIYCGRCEEVCPTRAIQLTNNFE 97 (181)
T ss_pred eeccCcCcCCCCcccccCcCeEEecccee
Confidence 455678999999999999 4566665543
No 226
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=41.24 E-value=9.1 Score=39.71 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=32.6
Q ss_pred cccCcccccccCcccCCCCcceeeccc-----ccceEE-ccCCCCHHHHHHHHHhCcccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKIEED-----FGRARV-YNQCGINEFVQQAIESCPVDC 209 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~e~d-----~g~a~v-~~q~g~~e~i~~Av~~CP~~a 209 (272)
+..+...|++|+.|...||..+.+... .|.... ....+.+..+..+...||++.
T Consensus 399 l~~eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 399 LKELAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HHHhhhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCCCC
Confidence 334566799999999999975432210 011100 011234556788999999863
No 227
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=41.23 E-value=14 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=20.2
Q ss_pred ccCcccccccCcccCCCCc-ceeeccc
Q 024126 157 FVDEFSCIGCKNCNNVAPE-VFKIEED 182 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~-vF~~e~d 182 (272)
.+|...|++|+.|..+||. ...+..+
T Consensus 69 ~i~~~~C~~Cg~C~~vCP~~AI~~~~~ 95 (180)
T PRK12387 69 EFNLGRCIFCGRCEEVCPTAAIKLSQE 95 (180)
T ss_pred eeccccCcCccchhhhcCcCceEccCc
Confidence 4677889999999999994 4555544
No 228
>PRK06273 ferredoxin; Provisional
Probab=39.70 E-value=14 Score=31.02 Aligned_cols=21 Identities=24% Similarity=0.573 Sum_probs=17.9
Q ss_pred cccCcccccccCcccCCCCcc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v 176 (272)
..+|...|++|+.|..+||..
T Consensus 86 ~~Id~~kCi~Cg~C~~aCP~~ 106 (165)
T PRK06273 86 PKIDYEKCVYCLYCHDFCPVF 106 (165)
T ss_pred eecccccCcCCCCcchhCCHh
Confidence 456888999999999999953
No 229
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=39.67 E-value=7.9 Score=31.13 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=17.0
Q ss_pred ccCcccccccCcccCCCCcc
Q 024126 157 FVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~v 176 (272)
.++...|++||.|..+||..
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred EeCcCcCcChhHHHHHCCcC
Confidence 46777899999999999954
No 230
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=39.04 E-value=11 Score=28.98 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=17.2
Q ss_pred cccCcccccccCcccCCCCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~ 175 (272)
..+|...|++|+.|..+||.
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09624 76 PVFDYDYCKGCGICANECPT 95 (105)
T ss_pred EEECchhCCCcCchhhhcCc
Confidence 45677889999999999994
No 231
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=38.72 E-value=14 Score=34.49 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=27.7
Q ss_pred cCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcc
Q 024126 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPV 207 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~ 207 (272)
+|...|.+||.|..+||....+.++.+. ... .....-...+...||.
T Consensus 2 ~~~~~c~~Cg~C~a~cp~~i~~~~~~~~--~~~-~c~~~~~~~~~~~cp~ 48 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPYAITERDEAPL--LIE-ECMDNGHGTCLKVCPE 48 (332)
T ss_pred CcCcccccchhhHhhCCceEEEecccch--hhh-hhhcccchHHhhhCcc
Confidence 3566799999999999984444443222 111 1111223367788983
No 232
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=38.09 E-value=12 Score=34.50 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=18.8
Q ss_pred ccccCcccccccCcccCCCCcc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~v 176 (272)
.+.+|...|++|+.|..+||..
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTG 216 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHh
Confidence 4567888999999999999954
No 233
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=37.45 E-value=13 Score=40.65 Aligned_cols=21 Identities=29% Similarity=0.933 Sum_probs=18.2
Q ss_pred cccCcccccccCcccCCCCcc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v 176 (272)
+.++...|++|+.|..+||..
T Consensus 734 i~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 734 IQISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred EEeccccCcCccchhhhcCCC
Confidence 457888999999999999964
No 234
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=36.93 E-value=9.8 Score=35.21 Aligned_cols=15 Identities=20% Similarity=0.612 Sum_probs=8.4
Q ss_pred HHHHhCccccccccc
Q 024126 200 QAIESCPVDCIHRTS 214 (272)
Q Consensus 200 ~Av~~CP~~aI~~~~ 214 (272)
..++.||++||.|..
T Consensus 179 ~cv~~C~~gAI~~~~ 193 (317)
T COG2221 179 KCVKVCPTGAITWDG 193 (317)
T ss_pred hHHHhCCCCceeecc
Confidence 555555555555544
No 235
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=36.53 E-value=23 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhc
Q 024126 112 FCMFINEVYAVLS 124 (272)
Q Consensus 112 ~~~~i~~Ay~vLs 124 (272)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3567778887764
No 236
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=36.17 E-value=21 Score=34.26 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=21.3
Q ss_pred ccccCcccccccCcccCCCCcceeec
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~e 180 (272)
.+.+|...|+.|++|..++|.-....
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~a~~~g 291 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPKALHPG 291 (402)
T ss_pred eEEEcchhcCcCccccccCcccccCC
Confidence 56788899999999999999755544
No 237
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=35.53 E-value=16 Score=37.88 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=18.2
Q ss_pred ccCcccccccCcccCCCCcceeec
Q 024126 157 FVDEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~vF~~e 180 (272)
-+.+..|+.||+|+.+||-.--|+
T Consensus 188 ~i~~SSCVsCG~CvtVCP~nALme 211 (978)
T COG3383 188 PINESSCVSCGACVTVCPVNALME 211 (978)
T ss_pred ccccccccccCccceecchhhhhh
Confidence 346678999999999999553333
No 238
>PRK06991 ferredoxin; Provisional
Probab=35.36 E-value=12 Score=34.02 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.1
Q ss_pred cccCcccccccCcccCCCCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~ 175 (272)
..++...|++||.|..+||.
T Consensus 110 ~~v~~~~CigCg~Cv~vCP~ 129 (270)
T PRK06991 110 HTVLADLCTGCDLCVPPCPV 129 (270)
T ss_pred eeeCHhhCCCchHHHhhCCc
Confidence 35677889999999999994
No 239
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=35.33 E-value=12 Score=35.73 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=20.2
Q ss_pred cccCcccccccCcccCCCCc--ceeec
Q 024126 156 VFVDEFSCIGCKNCNNVAPE--VFKIE 180 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~--vF~~e 180 (272)
..++...|++|+.|..+||. .+.+.
T Consensus 372 ~~i~~~~C~~Cg~C~~~CP~~~Ai~~~ 398 (420)
T PRK08318 372 PEVIEEECVGCNLCAHVCPVEGCITMG 398 (420)
T ss_pred EEechhhCcccchHHhhCCCCCCEEEe
Confidence 45788999999999999996 44454
No 240
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=35.17 E-value=33 Score=31.25 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=12.7
Q ss_pred HHHHHHHHhCcccccc
Q 024126 196 EFVQQAIESCPVDCIH 211 (272)
Q Consensus 196 e~i~~Av~~CP~~aI~ 211 (272)
..+..+++.||++||.
T Consensus 162 ~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 162 GRCTKCIDACPTQALV 177 (282)
T ss_pred ccHHHHHHhcCccccc
Confidence 4566888899999986
No 241
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=34.85 E-value=23 Score=26.80 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.4
Q ss_pred ccCcccccccCcccCCCCcc
Q 024126 157 FVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~v 176 (272)
.++...|++|+.|..+||..
T Consensus 62 ~i~~~~C~~Cg~C~~~CP~~ 81 (101)
T TIGR00402 62 EFDNAECDFCGKCAEACPTN 81 (101)
T ss_pred EecCccCcCccChhhHCCcc
Confidence 45666799999999999954
No 242
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=34.59 E-value=9.6 Score=33.58 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.7
Q ss_pred cccCcccccccCcccCCCCcceeeccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKIEED 182 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~e~d 182 (272)
..++...|++|+.|...||..|..+++
T Consensus 198 ~~i~~~~C~~C~~C~~~CP~~~~~~~~ 224 (228)
T TIGR03294 198 PNVNRDRCIKCGACYVQCPRAFWPEYE 224 (228)
T ss_pred EEEChhhccCHHHHHHHcCCCCcchhh
Confidence 457888999999999999998877654
No 243
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=34.36 E-value=15 Score=39.36 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=15.7
Q ss_pred cccCcccccccCcccCCCCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~ 175 (272)
+.++...|++||.|..+||.
T Consensus 921 ~~~~~~~C~~CG~C~~~CP~ 940 (1019)
T PRK09853 921 IVHLDAMCNECGNCAQFCPW 940 (1019)
T ss_pred eEEcCccCccccchhhhCCC
Confidence 33334789999999999984
No 244
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=32.98 E-value=15 Score=32.64 Aligned_cols=16 Identities=31% Similarity=0.839 Sum_probs=13.5
Q ss_pred ccccccCcccCCCCcc
Q 024126 161 FSCIGCKNCNNVAPEV 176 (272)
Q Consensus 161 ~~Cigcg~C~~~ap~v 176 (272)
..||.||.|...||.+
T Consensus 142 ~~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 142 SECILCGCCTAACPSI 157 (234)
T ss_pred hhccccchhhhhCCcc
Confidence 3499999999999865
No 245
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=32.93 E-value=18 Score=33.11 Aligned_cols=18 Identities=39% Similarity=0.839 Sum_probs=15.4
Q ss_pred cCcccccccCcccCCCCc
Q 024126 158 VDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~ 175 (272)
.|...|.+|+.|..+||.
T Consensus 286 ~d~~~C~gCg~C~~~CP~ 303 (312)
T PRK14028 286 FDYQYCKGCGVCAEVCPT 303 (312)
T ss_pred CCcccCcCcCchhhhCCH
Confidence 466789999999999993
No 246
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=31.98 E-value=47 Score=31.14 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHhCcccccccccchh
Q 024126 193 GINEFVQQAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 193 g~~e~i~~Av~~CP~~aI~~~~~~~ 217 (272)
..+..+..++++||++||.-....+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~ 209 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVD 209 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccc
Confidence 3456889999999999998655543
No 247
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=31.32 E-value=17 Score=32.85 Aligned_cols=21 Identities=19% Similarity=0.732 Sum_probs=18.1
Q ss_pred ccccCcccccccCcccCCCCc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~ 175 (272)
.+.+|...|++|+.|...||.
T Consensus 76 ~~~~~~~~C~~Cg~C~~~CP~ 96 (295)
T TIGR02494 76 RIIIRREKCTHCGKCTEACPS 96 (295)
T ss_pred ceeechhhcCchhHhhccCcH
Confidence 456788899999999999983
No 248
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=29.77 E-value=42 Score=30.14 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHh-----cCccccc
Q 024126 110 TNFCMFINEVYAVL-----SDPVQRM 130 (272)
Q Consensus 110 ~~~~~~i~~Ay~vL-----sd~~~R~ 130 (272)
..+.++||||+|+| +||++|.
T Consensus 127 RRRLkKVNEAFE~LKRrT~~NPNQRL 152 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKRRTSSNPNQRL 152 (284)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccccc
Confidence 35678999999997 5677653
No 249
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=29.72 E-value=16 Score=31.32 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=33.4
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.|-+..|.||+.|..-|| +..+|..... ..+.-....++||+.+|+-.+.
T Consensus 141 tv~~dlCTGC~lCva~CPtdci~m~~~~~---------~~~~~kw~~~~~~v~~~~~~~~ 191 (198)
T COG2878 141 TVIADLCTGCDLCVAPCPTDCIEMQPVAE---------TPDRWKWDLDTIPVIAIPARER 191 (198)
T ss_pred HHHHHHhcCCCcccCCCCCCceeeeeccc---------chhhccccccccccccchhHHH
Confidence 456677999999999998 5555654311 2344446677888888775443
No 250
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=29.53 E-value=17 Score=32.67 Aligned_cols=23 Identities=39% Similarity=0.795 Sum_probs=17.9
Q ss_pred cCcccccccCcccCCCCc-ceeec
Q 024126 158 VDEFSCIGCKNCNNVAPE-VFKIE 180 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~-vF~~e 180 (272)
++...|++|+.|..+||. ...+.
T Consensus 239 i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 239 VTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred eCcccCcChhHHHhhcCccceeec
Confidence 677789999999999994 34443
No 251
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=29.52 E-value=37 Score=30.26 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.7
Q ss_pred ccCcccccccCcccCCCC-cceeeccc
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEED 182 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d 182 (272)
..|...|++|+.|...|| +...+..+
T Consensus 195 v~~~~~C~~C~~C~~~Cp~~AI~~~~~ 221 (259)
T cd07030 195 VEDLEDCSLCKLCERACDAGAIRVGWD 221 (259)
T ss_pred EeChhhCcCchHHHHhCCCCcEEEEec
Confidence 356778999999999999 55555543
No 252
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=29.44 E-value=7.1 Score=25.87 Aligned_cols=16 Identities=38% Similarity=0.901 Sum_probs=10.6
Q ss_pred ccccccCcccCCCCcc
Q 024126 161 FSCIGCKNCNNVAPEV 176 (272)
Q Consensus 161 ~~Cigcg~C~~~ap~v 176 (272)
..|++||.|..++|-.
T Consensus 3 ~~Ci~Cg~C~~~CP~~ 18 (57)
T PF13183_consen 3 SKCIRCGACTSVCPVY 18 (57)
T ss_dssp HC--S-SHHHHCSHHH
T ss_pred HHccCccChHHHChhh
Confidence 4699999999999833
No 253
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=28.69 E-value=26 Score=31.35 Aligned_cols=18 Identities=39% Similarity=0.935 Sum_probs=15.3
Q ss_pred CcccccccCcccCCCCcc
Q 024126 159 DEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~v 176 (272)
+...||.||.|...||..
T Consensus 155 ~~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 155 DAAACIGCGACVAACPNG 172 (250)
T ss_pred CccccCCCcccccccCCc
Confidence 345699999999999976
No 254
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.53 E-value=25 Score=30.61 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHhCcccccccccchhhhhHHHHHhhhhhh
Q 024126 202 IESCPVDCIHRTSAQQLSLLEDEMRRVERV 231 (272)
Q Consensus 202 v~~CP~~aI~~~~~~~l~~le~~~~~~~~~ 231 (272)
++.||.+|+.+.... -..|+.+....+.
T Consensus 4 ~~~C~~~a~~~~g~~--~t~eel~~~~~~~ 31 (213)
T PRK10076 4 ADECPSGAFERIGRD--ITLDALEREVMKD 31 (213)
T ss_pred hhhchhhHHHhcCcc--cCHHHHHHHHHhh
Confidence 678999999987553 2345555555543
No 255
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=27.15 E-value=29 Score=32.45 Aligned_cols=23 Identities=35% Similarity=0.937 Sum_probs=18.3
Q ss_pred cccccccCcccCCCCcc--eeeccc
Q 024126 160 EFSCIGCKNCNNVAPEV--FKIEED 182 (272)
Q Consensus 160 e~~Cigcg~C~~~ap~v--F~~e~d 182 (272)
...|++||.|..+||.- |.|.|.
T Consensus 219 ~~rCi~C~~C~~~CPtC~Cf~i~D~ 243 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTCTCFSMQDV 243 (334)
T ss_pred HhhCCcCccccccCCceEeeEEEEe
Confidence 35799999999999955 677654
No 256
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=26.62 E-value=29 Score=32.29 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=17.0
Q ss_pred cCcccccccCcccCCCCcce
Q 024126 158 VDEFSCIGCKNCNNVAPEVF 177 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~vF 177 (272)
+|...|++||.|..+||.+.
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~~ 69 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVVD 69 (341)
T ss_pred CCcCcCcCcCchhhhCCCCc
Confidence 56778999999999999653
No 257
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=26.45 E-value=30 Score=32.57 Aligned_cols=16 Identities=44% Similarity=0.997 Sum_probs=14.4
Q ss_pred cccccCcccCCCCcce
Q 024126 162 SCIGCKNCNNVAPEVF 177 (272)
Q Consensus 162 ~Cigcg~C~~~ap~vF 177 (272)
.||+||.|..+||.-|
T Consensus 227 rCi~Cg~C~~~CPtC~ 242 (344)
T PRK15055 227 RCIACGRCNFVCPTCT 242 (344)
T ss_pred hCccCccccccCCceE
Confidence 7999999999999754
No 258
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=26.41 E-value=32 Score=27.79 Aligned_cols=14 Identities=29% Similarity=0.987 Sum_probs=12.9
Q ss_pred cccccCcccCCCCc
Q 024126 162 SCIGCKNCNNVAPE 175 (272)
Q Consensus 162 ~Cigcg~C~~~ap~ 175 (272)
.|+.||.|...||.
T Consensus 3 ~Ci~CG~C~~~CP~ 16 (144)
T TIGR03290 3 ACYQCGTCTGSCPS 16 (144)
T ss_pred cccCCCCCcCcCCC
Confidence 59999999999995
No 259
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=26.37 E-value=77 Score=18.41 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhCC
Q 024126 84 PEQIKKAYYNCMKACHP 100 (272)
Q Consensus 84 ~~~Ik~ayr~l~~~~HP 100 (272)
.++.|.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47888999999999993
No 260
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=25.60 E-value=21 Score=31.90 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.0
Q ss_pred cccCcccccccCcccCCCCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~ 175 (272)
..++...|+.|+.|...||.
T Consensus 229 ~~i~~~~C~~Cg~Cv~~CP~ 248 (255)
T TIGR02163 229 TLVLSGDCTLCGRCIDVCHE 248 (255)
T ss_pred eEeccccccchhHHHHhCCc
Confidence 35677889999999999994
No 261
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.14 E-value=1.5e+02 Score=25.03 Aligned_cols=43 Identities=30% Similarity=0.462 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHH-----------HHHHhCCCCCCC-----------------------chHHHHHHHHHHHHHH
Q 024126 79 LPDATPEQIKKAYYN-----------CMKACHPDLSGD-----------------------DPETTNFCMFINEVYA 121 (272)
Q Consensus 79 ~~~a~~~~Ik~ayr~-----------l~~~~HPD~~~~-----------------------~~~~~~~~~~i~~Ay~ 121 (272)
.+-++.+++..|... -.++-|||..+. .++..+.|..||++|.
T Consensus 41 ~pf~s~~~l~~am~~~v~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~ 117 (176)
T COG3195 41 RPFASAEGLHAAMCRAVRAASEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV 117 (176)
T ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH
Confidence 566777777776643 345679997532 1334567788888883
No 262
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=25.00 E-value=32 Score=34.65 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=30.3
Q ss_pred ccccccCcccCCCCcceeecccccceEEccCCCCHH----------HHHHHHHhCccc
Q 024126 161 FSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINE----------FVQQAIESCPVD 208 (272)
Q Consensus 161 ~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e----------~i~~Av~~CP~~ 208 (272)
..|..||.|...||+.+.+.+..+.+. .|+.. -+..+-+.||.+
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~eam~~A~----~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEAMEYAA----KGDFSKLEDLHDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HhcccccchhccCCcccchHHHHHHhh----cCChHHHHHHHHHhhhhhhhhhhCccc
Confidence 569999999999999999876434332 33332 234566788853
No 263
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=24.88 E-value=28 Score=30.88 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=16.6
Q ss_pred cccccccCcccCCCCcceeecccc
Q 024126 160 EFSCIGCKNCNNVAPEVFKIEEDF 183 (272)
Q Consensus 160 e~~Cigcg~C~~~ap~vF~~e~d~ 183 (272)
...||.||.|...||. +..+++|
T Consensus 148 ~~~CI~Cg~C~saCP~-~~~~~~f 170 (239)
T PRK13552 148 LDRCIECGCCVAACGT-KQMREDF 170 (239)
T ss_pred hhhccccchhHhhCCC-CccCCCc
Confidence 3459999999999994 3444444
No 264
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=23.91 E-value=36 Score=30.90 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.5
Q ss_pred CcccccccCcccCCCCcc
Q 024126 159 DEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~v 176 (272)
+...||.||.|...||..
T Consensus 150 ~~~~CI~CG~C~~~CP~~ 167 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVV 167 (279)
T ss_pred cchhCcccCcccccCCCc
Confidence 556799999999999965
No 265
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=23.81 E-value=27 Score=34.11 Aligned_cols=19 Identities=42% Similarity=0.955 Sum_probs=16.5
Q ss_pred cccCcccccccCcccCCCC
Q 024126 156 VFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap 174 (272)
.+..+..|||||.|...||
T Consensus 45 ~~ise~lCigcgicvkkcp 63 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCP 63 (592)
T ss_pred chhhHhhhccccceeeccC
Confidence 4567888999999999998
No 266
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=23.62 E-value=31 Score=33.32 Aligned_cols=19 Identities=37% Similarity=0.737 Sum_probs=15.8
Q ss_pred cCcccccccCcccCCCCcc
Q 024126 158 VDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 158 vDe~~Cigcg~C~~~ap~v 176 (272)
.+...|++|+.|..+||..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred ccCCcCcCccchhhhCccc
Confidence 3557899999999999853
No 267
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=23.30 E-value=27 Score=32.33 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=18.5
Q ss_pred CccccCcccccccCcccCCCCc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~ 175 (272)
..+.+|...|++|+.|...||.
T Consensus 214 ~~~~I~~~~ci~c~~c~~ac~~ 235 (354)
T COG2768 214 KVVKIDYEKCIGCGQCMEACPY 235 (354)
T ss_pred cceeechhhccchhhhhhhccC
Confidence 4456789999999999999983
No 268
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=23.19 E-value=34 Score=32.01 Aligned_cols=22 Identities=27% Similarity=0.904 Sum_probs=17.7
Q ss_pred CcccccccCcccCCCCcceeec
Q 024126 159 DEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~vF~~e 180 (272)
....|+|||.|...||....+.
T Consensus 299 G~~~CvgCGrC~~~CP~~idi~ 320 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYISFS 320 (334)
T ss_pred CccccCCcCchhhhCCCCCCHH
Confidence 4667999999999999765553
No 269
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=23.03 E-value=27 Score=33.80 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=16.7
Q ss_pred cccccccCcccCCCCcceeecc
Q 024126 160 EFSCIGCKNCNNVAPEVFKIEE 181 (272)
Q Consensus 160 e~~Cigcg~C~~~ap~vF~~e~ 181 (272)
...||.||.|..+||-.=.+..
T Consensus 307 ~L~CIRCGaC~n~CPvY~~iGg 328 (459)
T COG1139 307 ALRCIRCGACLNHCPVYRHIGG 328 (459)
T ss_pred HHHhhcchHhhhcChhhhhccC
Confidence 4569999999999996544443
No 270
>COG2879 Uncharacterized small protein [Function unknown]
Probab=23.03 E-value=1.4e+02 Score=20.94 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 024126 90 AYYNCMKACHPDLSGDDPETTNFCMFINE 118 (272)
Q Consensus 90 ayr~l~~~~HPD~~~~~~~~~~~~~~i~~ 118 (272)
-|-+-+++.|||+.+-. -.++|.+-++
T Consensus 27 nYVehmr~~hPd~p~mT--~~EFfrec~d 53 (65)
T COG2879 27 NYVEHMRKKHPDKPPMT--YEEFFRECQD 53 (65)
T ss_pred HHHHHHHHhCcCCCccc--HHHHHHHHHH
Confidence 46667889999987652 4566655443
No 271
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=22.46 E-value=37 Score=31.95 Aligned_cols=22 Identities=27% Similarity=0.827 Sum_probs=17.1
Q ss_pred CcccccccCcccCCCCcceeec
Q 024126 159 DEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~vF~~e 180 (272)
....|+|||.|..+||....+.
T Consensus 305 g~~~CvgCGrC~~~CP~~I~i~ 326 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYISFS 326 (344)
T ss_pred chhhCcCcCccccccCCCCCHH
Confidence 4457999999999999764443
No 272
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=22.31 E-value=48 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCcccccccccch
Q 024126 195 NEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 195 ~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
+..+..+++.||++||.....+
T Consensus 207 C~~C~~C~~~CP~~Ai~~~~~p 228 (314)
T TIGR02486 207 CETCGKCADECPSGAISKGGEP 228 (314)
T ss_pred CcchhHHHhhCCccccCCCCCC
Confidence 4678899999999999987554
No 273
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=22.18 E-value=36 Score=29.56 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=15.3
Q ss_pred CcccccccCcccCCCCcc
Q 024126 159 DEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~v 176 (272)
+...||.||.|..+||..
T Consensus 136 ~~~~Ci~CG~C~~~CP~~ 153 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAF 153 (220)
T ss_pred hhhhccccccccccCCCC
Confidence 446799999999999965
No 274
>PRK13409 putative ATPase RIL; Provisional
Probab=22.07 E-value=39 Score=34.01 Aligned_cols=58 Identities=26% Similarity=0.486 Sum_probs=33.0
Q ss_pred ccCcccccc--cC-cccCCCCcc------eeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 157 FVDEFSCIG--CK-NCNNVAPEV------FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cig--cg-~C~~~ap~v------F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
.||.+.|.- |+ .|...||-+ ..++++.+++..... -+.-+--++.-||-+||.++.-+
T Consensus 6 ~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~~e~--~c~~c~~c~~~cp~~a~~i~~~p 72 (590)
T PRK13409 6 VVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEE--LCIGCGICVKKCPFDAISIVNLP 72 (590)
T ss_pred EeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCceeeHh--hccccccccccCCcceEEEeeCc
Confidence 456666743 43 566666643 444443343322211 11224478999999999998765
No 275
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.82 E-value=3.3e+02 Score=19.91 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=27.1
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD 105 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~ 105 (272)
+|--.+.|+.+-++.+||..|-.+..+|..=-..++
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 344556788999999999999988888875444333
No 276
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=21.23 E-value=1.9e+02 Score=26.79 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCc--------------------------hHHHHHHHHHHHHHHHhcCccccch
Q 024126 80 PDATPEQIKKAYYNCMKACHPDLSGDD--------------------------PETTNFCMFINEVYAVLSDPVQRMV 131 (272)
Q Consensus 80 ~~a~~~~Ik~ayr~l~~~~HPD~~~~~--------------------------~~~~~~~~~i~~Ay~vLsd~~~R~~ 131 (272)
++.+.+||.+|.+..--.+|||.+..- ....-+.+-+|+.|..+=|-..|..
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy~Nrna 123 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNYTNRNA 123 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhhhccCC
Confidence 446999999999999999999975331 1244566889999999887766665
No 277
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=20.55 E-value=37 Score=32.43 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=18.1
Q ss_pred ccCcccccccCcccCCCCcceeec
Q 024126 157 FVDEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~vF~~e 180 (272)
..+-++||||..|.-.|-+++.-.
T Consensus 10 vmnLDKCIGCHTCSvTCKnvWTnR 33 (513)
T COG1140 10 VLNLDKCIGCHTCSVTCKNVWTNR 33 (513)
T ss_pred hhcccccccccccceeecccccCC
Confidence 345678999999988887775543
Done!