Query 024126
Match_columns 272
No_of_seqs 436 out of 2820
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.8 9.8E-22 3.4E-26 144.2 6.8 71 67-137 4-74 (79)
2 2ctp_A DNAJ homolog subfamily 99.8 4E-21 1.4E-25 140.6 6.4 70 67-137 4-73 (78)
3 2ej7_A HCG3 gene; HCG3 protein 99.8 5.8E-21 2E-25 141.1 7.2 71 67-137 6-77 (82)
4 1hdj_A Human HSP40, HDJ-1; mol 99.8 5.4E-21 1.8E-25 139.6 6.8 68 69-137 2-69 (77)
5 2yua_A Williams-beuren syndrom 99.8 5.3E-21 1.8E-25 146.4 6.8 72 65-136 12-83 (99)
6 2ctr_A DNAJ homolog subfamily 99.8 1.2E-20 4.1E-25 141.3 7.4 70 67-137 4-73 (88)
7 2och_A Hypothetical protein DN 99.8 8.9E-21 3E-25 137.1 5.8 67 68-137 6-72 (73)
8 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.1E-20 3.9E-25 141.4 6.2 70 67-137 14-83 (88)
9 2ctw_A DNAJ homolog subfamily 99.8 2.2E-20 7.4E-25 145.4 7.6 71 67-137 14-84 (109)
10 2ctq_A DNAJ homolog subfamily 99.8 9E-21 3.1E-25 148.3 5.3 71 67-137 17-87 (112)
11 1wjz_A 1700030A21RIK protein; 99.8 1.7E-20 5.9E-25 142.0 6.1 71 66-136 12-88 (94)
12 2dmx_A DNAJ homolog subfamily 99.8 3.2E-20 1.1E-24 140.1 7.3 71 67-137 6-77 (92)
13 2l6l_A DNAJ homolog subfamily 99.8 1.6E-20 5.5E-25 154.9 5.4 72 66-137 6-83 (155)
14 2o37_A Protein SIS1; HSP40, J- 99.8 2.6E-20 8.7E-25 140.7 5.4 69 67-138 5-73 (92)
15 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.3E-20 4.3E-25 145.2 3.1 69 69-137 2-70 (103)
16 2lgw_A DNAJ homolog subfamily 99.8 5.4E-20 1.8E-24 140.8 5.9 68 70-137 2-70 (99)
17 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.8E-19 6.2E-24 140.1 3.8 71 67-137 12-86 (109)
18 2ys8_A RAB-related GTP-binding 99.7 1.1E-18 3.6E-23 131.3 5.5 63 68-131 25-87 (90)
19 3apq_A DNAJ homolog subfamily 99.7 9.3E-19 3.2E-23 149.8 4.9 68 70-137 2-69 (210)
20 2pf4_E Small T antigen; PP2A, 99.7 3.9E-19 1.3E-23 148.6 1.3 66 68-137 9-76 (174)
21 1gh6_A Large T antigen; tumor 99.7 1.2E-18 4.1E-23 136.5 1.4 66 68-137 6-73 (114)
22 1iur_A KIAA0730 protein; DNAJ 99.7 4.6E-18 1.6E-22 127.2 3.5 69 64-132 10-79 (88)
23 3bvo_A CO-chaperone protein HS 99.7 2.3E-17 7.9E-22 142.0 7.4 82 54-135 27-115 (207)
24 3lz8_A Putative chaperone DNAJ 99.7 1.7E-18 5.7E-23 158.9 0.0 70 66-136 24-93 (329)
25 3hho_A CO-chaperone protein HS 99.7 1.1E-17 3.9E-22 140.4 4.8 68 68-135 2-76 (174)
26 1faf_A Large T antigen; J doma 99.7 8.6E-18 2.9E-22 123.3 3.3 62 68-133 9-72 (79)
27 2guz_A Mitochondrial import in 99.7 3.8E-17 1.3E-21 117.4 4.1 62 65-130 9-71 (71)
28 1n4c_A Auxilin; four helix bun 99.7 2.8E-17 9.6E-22 138.2 4.0 65 68-132 115-182 (182)
29 1fpo_A HSC20, chaperone protei 99.7 2.9E-17 9.8E-22 137.5 3.9 65 71-135 2-73 (171)
30 2qwo_B Putative tyrosine-prote 99.6 1.1E-16 3.9E-21 120.3 2.7 56 70-125 33-91 (92)
31 3ag7_A Putative uncharacterize 99.6 2.4E-16 8.3E-21 121.8 3.0 61 67-128 38-105 (106)
32 3uo3_A J-type CO-chaperone JAC 99.6 2.4E-16 8.3E-21 132.9 3.0 66 67-135 8-80 (181)
33 3apo_A DNAJ homolog subfamily 99.5 4.4E-16 1.5E-20 156.9 0.0 71 67-137 18-88 (780)
34 2guz_B Mitochondrial import in 99.1 6E-11 2E-15 83.3 3.6 52 70-125 4-58 (65)
35 2y4t_A DNAJ homolog subfamily 99.0 4.3E-10 1.5E-14 103.2 5.6 66 69-134 381-449 (450)
36 1iqz_A Ferredoxin; iron-sulfer 98.7 6.3E-09 2.1E-13 75.5 2.3 60 155-215 3-71 (81)
37 1dax_A Ferredoxin I; electron 98.5 7.3E-08 2.5E-12 66.3 3.3 60 155-214 3-63 (64)
38 1rof_A Ferredoxin; electron tr 98.4 1.5E-07 5.2E-12 63.4 2.8 59 155-214 2-60 (60)
39 1sj1_A Ferredoxin; thermostabi 98.3 1.3E-07 4.3E-12 65.0 1.7 59 155-214 3-65 (66)
40 1f2g_A Ferredoxin II; electron 98.3 3E-07 1E-11 61.8 2.6 56 156-213 2-58 (58)
41 1dwl_A Ferredoxin I; electron 98.2 2.9E-07 1E-11 61.7 1.2 57 156-213 2-59 (59)
42 1rgv_A Ferredoxin; electron tr 97.3 0.00011 3.7E-09 52.5 2.9 56 157-216 2-64 (80)
43 3eun_A Ferredoxin; electron tr 97.3 7.3E-05 2.5E-09 53.8 1.9 55 157-215 2-63 (82)
44 2fgo_A Ferredoxin; allochromat 97.3 0.00014 4.7E-09 52.2 2.9 56 157-216 2-64 (82)
45 1xer_A Ferredoxin; electron tr 97.3 2E-05 6.7E-10 59.1 -1.9 60 155-214 37-102 (103)
46 1jb0_C Photosystem I iron-sulf 97.1 3.1E-05 1.1E-09 55.0 -2.3 60 156-215 3-67 (80)
47 3gyx_B Adenylylsulfate reducta 96.9 8.7E-05 3E-09 61.1 -1.3 63 156-219 2-70 (166)
48 1jnr_B Adenylylsulfate reducta 96.9 8.5E-05 2.9E-09 60.1 -1.7 65 156-221 3-73 (150)
49 1kqf_B FDH-N beta S, formate d 96.8 0.00032 1.1E-08 62.9 1.7 68 154-221 124-195 (294)
50 2zvs_A Uncharacterized ferredo 96.8 0.00037 1.3E-08 50.3 1.8 55 157-215 2-64 (85)
51 1bc6_A 7-Fe ferredoxin; electr 96.4 0.0042 1.4E-07 43.6 4.9 55 157-215 2-59 (77)
52 1h98_A Ferredoxin; electron tr 96.2 0.0025 8.5E-08 45.0 2.8 55 157-215 2-59 (78)
53 7fd1_A FD1, protein (7-Fe ferr 96.1 0.0026 8.7E-08 47.8 2.4 55 157-215 2-59 (106)
54 1ti6_B Pyrogallol hydroxytrans 96.1 0.0019 6.4E-08 57.3 1.9 62 154-218 90-162 (274)
55 3i9v_9 NADH-quinone oxidoreduc 96.0 0.00061 2.1E-08 55.9 -1.6 57 159-215 49-118 (182)
56 2fdn_A Ferredoxin; electron tr 95.9 0.0069 2.3E-07 39.5 3.6 49 160-212 5-54 (55)
57 2vpz_B NRFC protein; oxidoredu 95.6 0.0058 2E-07 51.3 2.9 59 154-216 81-146 (195)
58 1gte_A Dihydropyrimidine dehyd 95.6 0.00094 3.2E-08 69.4 -2.6 60 154-216 944-1008(1025)
59 2v2k_A Ferredoxin; iron, trans 95.5 0.0009 3.1E-08 50.1 -2.4 56 157-216 2-60 (105)
60 1h0h_B Formate dehydrogenase ( 95.4 0.0024 8.3E-08 54.4 -0.2 65 154-221 99-172 (214)
61 2ivf_B Ethylbenzene dehydrogen 95.4 0.0047 1.6E-07 56.7 1.6 62 154-217 175-242 (352)
62 1hfe_L Protein (Fe-only hydrog 95.2 0.00084 2.9E-08 63.1 -4.0 59 155-215 27-87 (421)
63 3c8y_A Iron hydrogenase 1; dit 94.9 0.0021 7.3E-08 62.7 -2.3 61 154-215 138-210 (574)
64 3i9v_3 NADH-quinone oxidoreduc 94.4 0.0037 1.3E-07 63.1 -2.0 62 154-215 172-240 (783)
65 1q16_B Respiratory nitrate red 92.5 0.032 1.1E-06 53.5 1.0 58 154-213 208-271 (512)
66 2c42_A Pyruvate-ferredoxin oxi 91.3 0.03 1E-06 59.3 -0.7 62 156-217 681-768 (1231)
67 2vpz_B NRFC protein; oxidoredu 88.8 0.41 1.4E-05 39.8 4.5 58 155-215 50-110 (195)
68 2pzi_A Probable serine/threoni 87.6 0.35 1.2E-05 47.4 3.7 46 69-122 628-675 (681)
69 2ivf_B Ethylbenzene dehydrogen 87.0 0.077 2.6E-06 48.6 -1.3 59 155-215 143-204 (352)
70 2gmh_A Electron transfer flavo 86.3 0.12 4.1E-06 50.2 -0.4 56 159-215 508-573 (584)
71 1q16_B Respiratory nitrate red 85.2 0.097 3.3E-06 50.2 -1.6 59 155-215 176-237 (512)
72 1h0h_B Formate dehydrogenase ( 76.1 0.53 1.8E-05 39.7 -0.0 56 157-214 66-129 (214)
73 1ti6_B Pyrogallol hydroxytrans 73.2 0.55 1.9E-05 41.3 -0.7 56 156-214 61-118 (274)
74 1kqf_B FDH-N beta S, formate d 72.4 1.2 4.2E-05 39.3 1.4 56 156-214 93-152 (294)
75 7fd1_A FD1, protein (7-Fe ferr 72.3 1.6 5.4E-05 32.0 1.8 27 155-181 31-58 (106)
76 3mm5_B Sulfite reductase, diss 65.3 2.8 9.6E-05 38.2 2.2 55 156-212 200-258 (366)
77 3mm5_A Sulfite reductase, diss 60.0 2.2 7.5E-05 39.8 0.5 23 154-176 277-299 (418)
78 3or1_B Sulfite reductase beta; 59.3 2.1 7.2E-05 39.4 0.2 16 197-212 260-275 (386)
79 2v2k_A Ferredoxin; iron, trans 58.4 2.9 0.0001 30.3 0.9 59 156-216 32-91 (105)
80 3j16_B RLI1P; ribosome recycli 55.9 1.9 6.5E-05 42.1 -0.7 21 154-174 46-66 (608)
81 1xer_A Ferredoxin; electron tr 53.1 3.2 0.00011 29.9 0.3 20 156-175 76-95 (103)
82 3i9v_9 NADH-quinone oxidoreduc 52.5 2.8 9.5E-05 33.5 -0.2 26 156-181 91-117 (182)
83 2pa8_D DNA-directed RNA polyme 50.9 3.3 0.00011 36.0 0.0 84 164-265 174-259 (265)
84 3mm5_B Sulfite reductase, diss 50.8 2.5 8.4E-05 38.6 -0.8 23 153-175 231-253 (366)
85 3or1_A Sulfite reductase alpha 43.4 5.5 0.00019 37.3 0.3 25 155-179 295-319 (437)
86 1jnr_B Adenylylsulfate reducta 42.6 4.1 0.00014 32.1 -0.6 20 156-175 40-59 (150)
87 3or1_B Sulfite reductase beta; 42.4 4.1 0.00014 37.4 -0.8 17 198-214 224-240 (386)
88 2c42_A Pyruvate-ferredoxin oxi 40.3 4.6 0.00016 42.7 -0.8 20 156-175 737-756 (1231)
89 1hfe_L Protein (Fe-only hydrog 38.7 9.5 0.00033 35.3 1.1 18 159-176 62-79 (421)
90 3gyx_B Adenylylsulfate reducta 38.5 5.3 0.00018 32.1 -0.6 21 156-176 39-59 (166)
91 2pa8_D DNA-directed RNA polyme 36.3 9 0.00031 33.1 0.5 27 156-182 196-222 (265)
92 2wdq_B Succinate dehydrogenase 35.2 10 0.00034 31.9 0.6 21 156-176 142-162 (238)
93 2h88_B Succinate dehydrogenase 33.4 11 0.00038 32.1 0.6 20 157-176 152-171 (252)
94 1qqr_A Streptokinase domain B; 30.8 26 0.00088 27.3 2.2 32 71-102 33-64 (138)
95 3cf4_A Acetyl-COA decarboxylas 30.7 0.87 3E-05 46.1 -7.9 57 156-212 410-472 (807)
96 3bk7_A ABC transporter ATP-bin 29.2 8.8 0.0003 37.3 -0.8 21 154-174 60-80 (607)
97 1kf6_B Fumarate reductase iron 27.8 8 0.00027 32.6 -1.3 21 156-176 141-161 (243)
98 2gmh_A Electron transfer flavo 25.1 12 0.0004 36.0 -0.8 21 155-175 545-565 (584)
99 3c8y_A Iron hydrogenase 1; dit 24.5 13 0.00043 35.9 -0.7 21 156-176 183-203 (574)
100 3vr8_B Iron-sulfur subunit of 23.9 22 0.00076 31.1 0.8 17 161-177 180-196 (282)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.8e-22 Score=144.21 Aligned_cols=71 Identities=41% Similarity=0.677 Sum_probs=66.8
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||++||+|++++|||++++++++.+.|+.|++||++|+||.+|..||.++.
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 46779999999999999999999999999999999998777889999999999999999999999999754
No 2
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4e-21 Score=140.64 Aligned_cols=70 Identities=37% Similarity=0.581 Sum_probs=65.4
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+||+++++++|||+++. +.+.+.|++|++||++|+||.+|..||.++.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 456799999999999999999999999999999999986 6788999999999999999999999999754
No 3
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.8e-21 Score=141.05 Aligned_cols=71 Identities=35% Similarity=0.483 Sum_probs=65.1
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||++++++|||+++... .+++.|++|++||++|+||.+|..||.++.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 45679999999999999999999999999999999998753 578899999999999999999999999753
No 4
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=5.4e-21 Score=139.62 Aligned_cols=68 Identities=38% Similarity=0.596 Sum_probs=63.7
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++++.++||+||+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4699999999999999999999999999999999986 5678999999999999999999999999754
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.3e-21 Score=146.38 Aligned_cols=72 Identities=31% Similarity=0.393 Sum_probs=67.3
Q ss_pred CCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 65 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..+...|||+||||+++++.++||+|||+|++++|||++++++++.+.|++|++||+||+||.+|..||...
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 346778999999999999999999999999999999999877888999999999999999999999999864
No 6
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=141.33 Aligned_cols=70 Identities=33% Similarity=0.497 Sum_probs=65.5
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||+|++++|||+++. +.+.+.|++|++||++|+||.+|..||.++.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 456799999999999999999999999999999999985 7789999999999999999999999999764
No 7
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.82 E-value=8.9e-21 Score=137.11 Aligned_cols=67 Identities=37% Similarity=0.569 Sum_probs=61.8
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...|||+||||+++++.++||++|+++++++|||++++ ..+.|++|++||++|+||.+|..||.+|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT---CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC---HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 56799999999999999999999999999999999976 36789999999999999999999999753
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.1e-20 Score=141.44 Aligned_cols=70 Identities=34% Similarity=0.521 Sum_probs=65.1
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||++++++|||+++. +.+++.|++|++||++|+||.+|..||.++.
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 356799999999999999999999999999999999987 5688999999999999999999999999754
No 9
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.2e-20 Score=145.45 Aligned_cols=71 Identities=35% Similarity=0.547 Sum_probs=66.8
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||+|++++|||++++++++.+.|++|++||++|+||.+|..||.++.
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 35679999999999999999999999999999999999878889999999999999999999999999764
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=9e-21 Score=148.28 Aligned_cols=71 Identities=24% Similarity=0.400 Sum_probs=66.7
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||+|++++|||++++++++.+.|++|++||+||+||.+|..||.++.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 45689999999999999999999999999999999998777889999999999999999999999999754
No 11
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.81 E-value=1.7e-20 Score=141.96 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=64.7
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD------PETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~------~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.....|||+||||+++++.++||+|||+|++++|||+++.+ +.+.+.|++|++||+||+||.+|..||...
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 35678999999999999999999999999999999998742 457899999999999999999999999874
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=140.07 Aligned_cols=71 Identities=38% Similarity=0.588 Sum_probs=65.1
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||++||+|++++|||+++.. ..+++.|++|++||++|+||.+|..||.++.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 3567999999999999999999999999999999999864 4678899999999999999999999999754
No 13
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-20 Score=154.87 Aligned_cols=72 Identities=24% Similarity=0.407 Sum_probs=64.6
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP------ETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~------~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.....|||+||||+++++.++||+|||+|++++|||+++..+ .+.+.|++|++||++|+||.+|+.||..+.
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 346679999999999999999999999999999999998753 357899999999999999999999998653
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.6e-20 Score=140.70 Aligned_cols=69 Identities=30% Similarity=0.505 Sum_probs=63.0
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
....|||+||||+++++.++||+|||+|++++|||+++.+ .+.|++|++||++|+||.+|..||.++..
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 3567999999999999999999999999999999999763 56899999999999999999999997643
No 15
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.80 E-value=1.3e-20 Score=145.25 Aligned_cols=69 Identities=35% Similarity=0.537 Sum_probs=65.0
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++++.++||+|||+|++++|||+++.++++++.|++|++||++|+||.+|..||.++.
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 469999999999999999999999999999999998767788999999999999999999999999864
No 16
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-20 Score=140.79 Aligned_cols=68 Identities=32% Similarity=0.468 Sum_probs=63.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++++.++||+|||++++++|||+++.. ..+.+.|++|++||++|+||.+|..||.++.
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999999999874 3578899999999999999999999999754
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.76 E-value=1.8e-19 Score=140.12 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=65.1
Q ss_pred CCcCCcccccCcCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDA-TPEQIKKAYYNCMKACHPDLSGD---DPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a-~~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||++++ +.++||+|||++++++|||++++ .+.+.+.|++|++||++|+||.+|..||.++.
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 3467999999999999 99999999999999999999986 35678999999999999999999999999764
No 18
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=131.31 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=58.5
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccch
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~ 131 (272)
...|||+||||+++++.++||+|||+|++++|||+++. +.+.+.|++|++||++|+|+.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence 45799999999999999999999999999999999976 5678899999999999999999874
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.74 E-value=9.3e-19 Score=149.81 Aligned_cols=68 Identities=28% Similarity=0.502 Sum_probs=64.8
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.++||+|||+|++++|||++++++++.+.|+.|++||++|+||.+|+.||.+|.
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 58999999999999999999999999999999998778889999999999999999999999999764
No 20
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.73 E-value=3.9e-19 Score=148.59 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=58.3
Q ss_pred CcCCcccccCcCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 68 IADDYYAVLGLLPDAT--PEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...|||+||||+++|+ .++||+|||++++++|||++++ ++.|++|++||++|+||.+|+.||++|.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3468999999999998 6999999999999999999876 4688999999999999999999999875
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.71 E-value=1.2e-18 Score=136.48 Aligned_cols=66 Identities=27% Similarity=0.344 Sum_probs=60.6
Q ss_pred CcCCcccccCcCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 68 IADDYYAVLGLLPDATP--EQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...+||+||||+++++. ++||+|||+|++++|||++++ .+.|++|++||+||+||.+|+.||.++.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 34689999999999998 999999999999999999876 4689999999999999999999998754
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.70 E-value=4.6e-18 Score=127.19 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=60.8
Q ss_pred CCCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchh
Q 024126 64 STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVY 132 (272)
Q Consensus 64 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~Y 132 (272)
+......++|+||||+++++.++||+|||+|+++||||+++++. .+++.|++|++||++|+|...|..+
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~ 79 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN 79 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34456689999999999999999999999999999999998763 4789999999999999998877443
No 23
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=142.00 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=68.3
Q ss_pred ccccccccCCCCCCCcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCc
Q 024126 54 RARVTAEDSASTDAIADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDP 126 (272)
Q Consensus 54 ~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~ 126 (272)
.+.|..+....+.....|||+||||+++ ++.++||++||+|++++|||++++.++ +.+.|+.||+||+||+||
T Consensus 27 ~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp 106 (207)
T 3bvo_A 27 RFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAP 106 (207)
T ss_dssp CCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred ccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 3445555555555567899999999986 799999999999999999999886432 457889999999999999
Q ss_pred cccchhccc
Q 024126 127 VQRMVYDEI 135 (272)
Q Consensus 127 ~~R~~YD~~ 135 (272)
.+|+.||..
T Consensus 107 ~~R~~Yd~~ 115 (207)
T 3bvo_A 107 LSRGLYLLK 115 (207)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999974
No 24
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.69 E-value=1.7e-18 Score=158.93 Aligned_cols=70 Identities=31% Similarity=0.526 Sum_probs=0.0
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.+..+|||+||||+++|+.++||+|||+|+++||||++++ +++++.|++|++||++|+||.+|+.||.++
T Consensus 24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 3556899999999999999999999999999999999986 578899999999999999999999999974
No 25
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.69 E-value=1.1e-17 Score=140.36 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=61.1
Q ss_pred CcCCcccccCcCCCCC--HHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024126 68 IADDYYAVLGLLPDAT--PEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
...|||+||||+++++ .++||++||++++++|||++++.+. +.+.|..||+||+||+||.+|..||..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 3569999999999987 9999999999999999999887543 568999999999999999999999985
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.68 E-value=8.6e-18 Score=123.30 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=56.4
Q ss_pred CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhc
Q 024126 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYD 133 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD 133 (272)
...++|+||||+++ ++.++||+|||+|++++|||++++ .+.|++|++||++|+|+.+|..++
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34689999999999 999999999999999999999865 578999999999999999998743
No 27
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.8e-17 Score=117.43 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=54.5
Q ss_pred CCCCcCCcccccCcCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccc
Q 024126 65 TDAIADDYYAVLGLLP-DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130 (272)
Q Consensus 65 ~~~~~~d~Y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~ 130 (272)
..+...++|+||||++ +++.++||+|||+|++++|||++++ .+.|++|++||++|+|+..|+
T Consensus 9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhcC
Confidence 3455679999999999 7999999999999999999999754 568999999999999987663
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.66 E-value=2.8e-17 Score=138.15 Aligned_cols=65 Identities=25% Similarity=0.452 Sum_probs=59.9
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHhcCccccchh
Q 024126 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVY 132 (272)
Q Consensus 68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~---~~~~~~~i~~Ay~vLsd~~~R~~Y 132 (272)
...|||+||||+++++.++||+|||++++++|||++++.+. +++.|+.|++||+||+|+.+|..|
T Consensus 115 ~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 34799999999999999999999999999999999987543 788999999999999999999987
No 29
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.66 E-value=2.9e-17 Score=137.50 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=60.2
Q ss_pred CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024126 71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 71 d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
|||+||||++++ +.++||++||+|+++||||++++.++ +.+.|..||+||+||+||.+|..||..
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 73 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS 73 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 799999999999 99999999999999999999887543 457899999999999999999999986
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.62 E-value=1.1e-16 Score=120.28 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=51.6
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 024126 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~~~~~~~~i~~Ay~vLsd 125 (272)
.++|++|||++.|+.++||+|||+++++||||++++++ .+++.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999998754 378899999999999975
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.60 E-value=2.4e-16 Score=121.80 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=52.9
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC---ch----HHHHHHHHHHHHHHHhcCccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD---DP----ETTNFCMFINEVYAVLSDPVQ 128 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~----~~~~~~~~i~~Ay~vLsd~~~ 128 (272)
+...|||+|||++. |+.++||+|||++++++|||++++ ++ .+++.|+.|++||++|+|+..
T Consensus 38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 34579999999996 999999999999999999999763 12 368899999999999999863
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.59 E-value=2.4e-16 Score=132.92 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=60.0
Q ss_pred CCcCCccccc------CcCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126 67 AIADDYYAVL------GLLP-DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 67 ~~~~d~Y~iL------gv~~-~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
....|||+|| |+++ +++.++||++||+|++++|||++++ +.+.|..||+||+||+||.+|..||..
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 4567999999 4665 8999999999999999999999986 577899999999999999999999985
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.54 E-value=4.4e-16 Score=156.91 Aligned_cols=71 Identities=27% Similarity=0.466 Sum_probs=40.7
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++|+.++||+|||+|++++|||++++++++++.|++|++||++|+||.+|+.||.+|.
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 45679999999999999999999999999999999998778889999999999999999999999999863
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.08 E-value=6e-11 Score=83.29 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCcccccCcCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024126 70 DDYYAVLGLLPD---ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 70 ~d~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd 125 (272)
.+.|.||||+++ ++.++|+++||+|+..+|||++++ .....+|++|+++|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHH
Confidence 467899999999 999999999999999999999876 4566889999999964
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.96 E-value=4.3e-10 Score=103.20 Aligned_cols=66 Identities=32% Similarity=0.481 Sum_probs=56.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcCccccchhcc
Q 024126 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~~~~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
..++|.+||+...++.++|+++|+++++++|||+.+.. ..+.+.|+.|++||++|+|+.+|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 34899999999999999999999999999999999874 2478899999999999999999999997
No 36
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=98.67 E-value=6.3e-09 Score=75.46 Aligned_cols=60 Identities=32% Similarity=0.592 Sum_probs=48.2
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccC---------CCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q---------~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.+|...|+|||.|..+||+.|.++++ |.+.+..+ .+....+..++..||++||++...
T Consensus 3 ~v~vd~~~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~ 71 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE 71 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred EEEEecccCcccChhhHhCchheeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence 4678999999999999999999999765 77665532 223456789999999999998764
No 37
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=98.48 E-value=7.3e-08 Score=66.26 Aligned_cols=60 Identities=33% Similarity=0.776 Sum_probs=47.6
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccC-CCCHHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|...|+|||.|..++|+.|.++++.|...++.. .........++..||++||.+.+
T Consensus 3 ~~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 63 (64)
T 1dax_A 3 KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp CCEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred EEEEccccCCCchHHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence 4578888999999999999999988765456555431 34566788999999999999864
No 38
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=98.38 E-value=1.5e-07 Score=63.39 Aligned_cols=59 Identities=36% Similarity=0.693 Sum_probs=43.9
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|...|++|+.|..++|..|.++++ |...+............++..||++||.+.+
T Consensus 2 ~~~i~~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~~ 60 (60)
T 1rof_A 2 KVRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAISVEE 60 (60)
T ss_dssp CSEECTTTCCSCCSSTTTCTTTBCCCSS-SCCCBSCSSCCSTTHHHHHHHCTTCCEECCC
T ss_pred EEEEchhhCCCChHHHHhCcHHHeECCC-CCEeecCchhhHHHHHHHHHhCCHhHEEEeC
Confidence 3567888999999999999998887655 5544442122334567899999999998753
No 39
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=98.34 E-value=1.3e-07 Score=65.04 Aligned_cols=59 Identities=31% Similarity=0.619 Sum_probs=45.3
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccCC-CC---HHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQC-GI---NEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~-g~---~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|...|++|+.|...+|+.|.++++ |...++.+. .+ ......++..||++||.+.+
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~ 65 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECcccCcCchHHHHhCCceEEECCC-CceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence 3578889999999999999999988654 666555431 22 34568899999999998753
No 40
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=98.29 E-value=3e-07 Score=61.76 Aligned_cols=56 Identities=32% Similarity=0.712 Sum_probs=43.3
Q ss_pred cccCcccccccCcccCCCCcceeecccccceEEccC-CCCHHHHHHHHHhCcccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
+.+| ..|++|+.|..++|..|.++++ |...++++ .........++..||++||.++
T Consensus 2 v~id-~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 58 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIVRS 58 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCBCC
T ss_pred cEEC-CcCccchHHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEEeC
Confidence 4678 8899999999999998888664 55555541 3334567899999999999863
No 41
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=98.21 E-value=2.9e-07 Score=61.71 Aligned_cols=57 Identities=35% Similarity=0.777 Sum_probs=42.5
Q ss_pred cccCcccccccCcccCCCCcceee-cccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKI-EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~-e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
+.+|...|++|+.|...+|..|.+ +++ |...+............++..||++||.++
T Consensus 2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~-~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~ 59 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCPEVFAMIDGE-EKAMVTAPDSTAECAQDAIDACPVEAISKE 59 (59)
T ss_dssp EEESSCCCSSCCGGGGTSTTTEEEEECS-SCEEESCTTCCCGGGGTGGGGSTTCCEEEC
T ss_pred eEEChhhCcChhHHHHHCCHHheecCCC-CcEEEecChhhhhHHHHHHHhCCHhhEEcC
Confidence 467888999999999999988888 443 665552122233456689999999999863
No 42
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=97.33 E-value=0.00011 Score=52.48 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=39.1
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccch
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~ 216 (272)
++|...|++|+.|...+| +.+.++++ ... ++ ........ .++..||++||.+....
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~~-~~-~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~ 64 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPNEAITPGDP--IYV-ID-PTKCSECVGAFDEPQCRLVCPADCIPDNPDY 64 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTTCCEECCSS--SCE-EC-TTTCCTTTTTCSSCHHHHHCSSCCCCBCGGG
T ss_pred eEeCCCCcChhhHHHHcChhccCcCCC--eeE-Ec-chhCcCCCCcCCccHHHHhcCcccEEecCCc
Confidence 356778999999999999 67777653 222 21 11122344 78999999999987654
No 43
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=97.32 E-value=7.3e-05 Score=53.78 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=38.4
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccc
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~ 215 (272)
++|...|++|+.|..+|| +.+.+++ +...+... ...... .++..||++||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~--~~~~i~~~--~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQGD--ETYVIEPS--LCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEECS--SSEEECGG--GCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred eEeCCCCcCccchHHHCChhheEcCC--CceEEchh--hcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 457788999999999999 4677755 33322211 112233 7899999999999865
No 44
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=97.27 E-value=0.00014 Score=52.15 Aligned_cols=56 Identities=27% Similarity=0.482 Sum_probs=38.9
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccch
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~ 216 (272)
+++...|++|+.|..+|| +.+.++++ .. +++. ....... .++..||++||.+....
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~-~~~~-~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~ 64 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPNGAISQGEE--IY-VIDP-NLCTECVGHYDEPQCQQVCPVDCIPLDDAN 64 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTTCCEEECSS--SE-EECT-TTCCTTTTTCSSCHHHHHCTTCCCCBCTTS
T ss_pred ceeCCCCCChhhHHHHCChhccCCCCC--eE-EEEc-hhCccCCCcCCCCHhHhhCCcccEEccCCC
Confidence 456778999999999999 67777653 22 2221 1112233 78999999999987653
No 45
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=97.25 E-value=2e-05 Score=59.05 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=40.6
Q ss_pred ccccCcccccccCcccCCCC-cceeecccccce-----EEccCCCCHHHHHHHHHhCccccccccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRA-----RVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a-----~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|...|++|+.|..+|| ..|.++++.+.. .+.........+..++..||++||.+..
T Consensus 37 ~~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 102 (103)
T 1xer_A 37 IVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVKP 102 (103)
T ss_dssp SEEEETTTCCCCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEECC
T ss_pred eEEEehhhCCChhhHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccccceEecC
Confidence 46789999999999999999 777776532221 1111111122345899999999998764
No 46
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=97.07 E-value=3.1e-05 Score=54.97 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=39.9
Q ss_pred cccCcccccccCcccCCCC-cceeeccccc---ceE-EccCCCCHHHHHHHHHhCcccccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG---RAR-VYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g---~a~-v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+.+|...|++|+.|..+|| +.|.+++..+ ... ..........+..++..||++||.+...
T Consensus 3 ~~~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 67 (80)
T 1jb0_C 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVY 67 (80)
T ss_dssp EEEEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEEE
T ss_pred CcccCCcCcChhHHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeeee
Confidence 4567788999999999999 7787765223 111 1111111223458999999999997554
No 47
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=96.91 E-value=8.7e-05 Score=61.09 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=44.6
Q ss_pred cccCcccccccC-----cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126 156 VFVDEFSCIGCK-----NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 156 v~vDe~~Cigcg-----~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
+.+|...|++|+ .|..+|| +.+.++++.+....+.. .....+..++..||++||.+....++.
T Consensus 2 v~id~~~C~gC~~c~~~~C~~~CP~~ai~~~~~~~~~~~~d~-~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~ 70 (166)
T 3gyx_B 2 TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEP-EACWECYSCIKICPQGAITARPYADFA 70 (166)
T ss_dssp EEECTTTCCCCCSSSCCHHHHHCTTSCEEEETTTTEEEESCG-GGCCCCCHHHHHCSSCCEEECCCTTTC
T ss_pred CEEcchhcCCCCCCCcchhHHhCCccccEEecCCceeEecCc-ccCcccChHhHhCCccceEEecccccc
Confidence 467889999999 9999999 56777765233333321 122234589999999999998776544
No 48
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=96.86 E-value=8.5e-05 Score=60.11 Aligned_cols=65 Identities=22% Similarity=0.429 Sum_probs=45.2
Q ss_pred cccCcccccccC-----cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024126 156 VFVDEFSCIGCK-----NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 156 v~vDe~~Cigcg-----~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l 221 (272)
+.+|...|++|+ .|..+|| +.+.++++.+.+.+++. .....+..++..||++||.+....++..+
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~-~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~ 73 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREP-DMCWECYSCVKMCPQGAIDVRGYVDYSPL 73 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCG-GGCCCCCHHHHHCTTCCEEECCCTTTCCT
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCc-ccCcCHhHHHHhCCccceEecCcchhhhh
Confidence 467888999999 9999999 56777765233333322 11223458999999999998876554433
No 49
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=96.84 E-value=0.00032 Score=62.86 Aligned_cols=68 Identities=22% Similarity=0.424 Sum_probs=45.5
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHH---HHHHHhCcccccccccchhhhhH
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFV---QQAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i---~~Av~~CP~~aI~~~~~~~l~~l 221 (272)
..+.+|...|++|+.|...|| +.+.++++.+....-...++.... -.++..||++||.+.+.+++..+
T Consensus 124 g~v~id~~~CigCg~C~~~CP~~ai~~~~~~~~~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~~~~~~~ 195 (294)
T 1kqf_B 124 GIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLEL 195 (294)
T ss_dssp SCEEECGGGCCCCCHHHHHCTTCCCEEETTTTEEECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEHHHHHHH
T ss_pred cceEeCcccCCCcchhhhcCCCCCcEecCCCCCeeeCCCccchhhcCccHHHHHhCCcCcEEEecHHHHHHH
Confidence 456789999999999999999 567776543432211111111111 18999999999999887765543
No 50
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=96.83 E-value=0.00037 Score=50.30 Aligned_cols=55 Identities=18% Similarity=0.424 Sum_probs=37.4
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcc-cccccccc
Q 024126 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPV-DCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~-~aI~~~~~ 215 (272)
+++...|++|+.|..+|| +.+.++++ ...+... ...... .++..||+ +||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~~~~~~--~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~ 64 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPNEAISMGDH--IYEINSD--KCTECVGHYETPTCQKVCPIPNTIVKDPA 64 (85)
T ss_dssp EEECTTCCCCCTTTTTCTTCCEECCSS--SCEECGG--GCCTTTTTCSSCHHHHHCSSCCEEECTTS
T ss_pred EEeCCcCcChhHHHHHCchhccCcCCC--ceEEeCh--hccCCCCcCCccHhhHhCcCCCCEEecCC
Confidence 356678999999999999 56776653 2222111 111233 78999999 99998765
No 51
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=96.42 E-value=0.0042 Score=43.63 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=37.2
Q ss_pred ccCcccccc--cCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 157 FVDEFSCIG--CKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~Cig--cg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
++|...|++ |+.|..++| +.+.+++ +... ++. .........+..||++||.+...
T Consensus 2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~~~--~~~~-~~~-~~C~~Cg~C~~~CP~~ai~~~~~ 59 (77)
T 1bc6_A 2 YVITEPCIGTKDASCVEVCPVDCIHEGE--DQYY-IDP-DVCIDCGACEAVCPVSAIYHEDF 59 (77)
T ss_dssp EECCSTTTTCCCCSSTTTCTTCCEEECS--SSEE-ECT-TTCCSCCSHHHHSGGGSSEETTT
T ss_pred EEeCccCCCCCcchhHHhcccccEEeCC--CcEE-ECc-ccCcCccCCHhhcCccceEecCC
Confidence 457788999 899999999 4566654 3322 221 11122447889999999998654
No 52
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=96.22 E-value=0.0025 Score=44.99 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=38.3
Q ss_pred ccCcccccc--cCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 157 FVDEFSCIG--CKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~Cig--cg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
++|...|++ |+.|..++| +.+.+++ +... ++. ........++..||++||.+...
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~~--~~~~-~~~-~~C~~C~~C~~~CP~~Ai~~~~~ 59 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYDGG--DQFY-IHP-EECIDCGACVPACPVNAIYPEED 59 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECS--SSEE-ECT-TTCCCCCTHHHHCTTCCEEEGGG
T ss_pred EEEchhCCCCCcChhhhhcCccceEcCC--CEEE-ECc-ccCCcHhHHHHhCCccceEeccc
Confidence 467788999 999999999 4677765 3332 222 11222457899999999997655
No 53
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=96.09 E-value=0.0026 Score=47.76 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=38.9
Q ss_pred ccCcccccccC--cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 157 FVDEFSCIGCK--NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~Cigcg--~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
++|...|++|+ .|..+|| +.+.+++ +... ++. .....+..++..||++||.+...
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~--~~~~-i~~-~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYEGP--NFLV-IHP-DECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECS--SCEE-ECT-TTCCCCCTTGGGCTTCCEEEGGG
T ss_pred eECccccCCccCcHHHHHcCccceEcCC--CcEE-ECc-ccCCChhhhHHhCCChhhhcccc
Confidence 46778899999 9999999 5666655 3332 221 11223447899999999998775
No 54
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=96.08 E-value=0.0019 Score=57.31 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccC-CCCHHHH------H---HHHHhCcccccccccchhh
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFV------Q---QAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q-~g~~e~i------~---~Av~~CP~~aI~~~~~~~l 218 (272)
..+.+|...|++|+.|...|| +...++++.+.. .. .+=.+.+ - .++..||++||.+.+..+.
T Consensus 90 g~v~id~~~CigC~~C~~~CP~~Ai~~~~~~~~~---~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~~dp 162 (274)
T 1ti6_B 90 GIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVA---QKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTTPE 162 (274)
T ss_dssp SCEEECTTTTTTCGGGGGGCSSCCCEEETTTTEE---ECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEECHH
T ss_pred CcEEechhhccchHHHHhhCccCCeEEEcccCcc---ccCCCchhhhhhhccCCCCcchhhhCCcCceEEcCCCcH
Confidence 457789999999999999999 445555532321 12 2111222 1 7899999999999887744
No 55
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=96.01 E-value=0.00061 Score=55.86 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=35.7
Q ss_pred CcccccccCcccCCCC-cceeeccccc------------ceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 159 DEFSCIGCKNCNNVAP-EVFKIEEDFG------------RARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 159 De~~Cigcg~C~~~ap-~vF~~e~d~g------------~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
|...|++|+.|..+|| ..+.++.+.. .............+..++..||++||.+...
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 118 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYD 118 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCCEEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCSSSCEEECSC
T ss_pred CCccCcccccchhhCCcccEEeecccccccccccccccccceeecCCCcCcChhChhhhCCccceEecCc
Confidence 5678999999999999 3444432211 0011111222334558999999999998754
No 56
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=95.91 E-value=0.0069 Score=39.49 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=32.8
Q ss_pred cccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126 160 EFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 160 e~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
...|++|+.|...+|. .+.+++ +... ++. .........+..||++||.+
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~~~--~~~~-~~~-~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISSGD--DRYV-IDA-DTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEECCS--SSCE-ECT-TTCCCCCHHHHTCTTCCEEE
T ss_pred cccCcChhhHHHHCCccccCcCC--CEEE-ecc-ccCcChhChHHHccccceec
Confidence 5679999999999994 465554 3322 221 11122447899999999975
No 57
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=95.63 E-value=0.0058 Score=51.31 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=41.6
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccC-CCCHHHHH-----HHHHhCcccccccccch
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFVQ-----QAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q-~g~~e~i~-----~Av~~CP~~aI~~~~~~ 216 (272)
..+.+|...|++|+.|...|| +.+.++++.+ ... .+-.+.+. .++..||++||.+.+..
T Consensus 81 g~~~id~~~CigC~~C~~~CP~~Ai~~~~~~~----~~kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~~~ 146 (195)
T 2vpz_B 81 GLVLVDPKKCIACGACIAACPYDARYLHPAGY----VSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLE 146 (195)
T ss_dssp SCEEECTTTCCCCCHHHHHCTTCCCEECTTSS----EECCCTTHHHHHTTCCCHHHHSCTTCCEEEEETT
T ss_pred cceeecCCCCCCcChhHhhCCCCCeEECCCCC----CccCcCcchHHhCCCCchhHhhCCcccEEEeccc
Confidence 356788999999999999999 6677776533 111 22122222 58999999999997655
No 58
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=95.59 E-value=0.00094 Score=69.36 Aligned_cols=60 Identities=20% Similarity=0.425 Sum_probs=44.7
Q ss_pred CccccCcccccccCcccCCCC----cceeecccccceEEccCCCCHHHHHHHHHhCcc-cccccccch
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP----EVFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap----~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~-~aI~~~~~~ 216 (272)
..+.+|+..|++|+.|..+|| +.+.++++.+.. ++. ..+..+..++..||+ +||.++...
T Consensus 944 ~~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~-~~~--~~C~~Cg~C~~~CP~~~Ai~~~~~~ 1008 (1025)
T 1gte_A 944 VVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLP-TVT--DTCTGCTLCLSVCPIIDCIRMVSRT 1008 (1025)
T ss_dssp EEEEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCE-EEC--TTCCCCCHHHHHCSSTTTEEEEECC
T ss_pred ceEEEEcccCcccCHHHHhcCccccCCEEEeCCCceE-EeC--ccCCChhHHHhhCCCCCCEEEecCc
Confidence 346789999999999999999 678777652333 332 334456689999999 999987654
No 59
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=95.47 E-value=0.0009 Score=50.10 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=38.3
Q ss_pred ccCccccccc--CcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 157 FVDEFSCIGC--KNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cigc--g~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
++|...|++| +.|..+|| +.+.++++ .. .++. .....+..++..||++||.+....
T Consensus 2 ~i~~~~C~~C~c~~C~~~CP~~ai~~~~~--~~-~~~~-~~C~~Cg~C~~~CP~~Ai~~~~~~ 60 (105)
T 2v2k_A 2 YVIAEPCVDVKDKACIEECPVDCIYEGAR--ML-YIHP-DECVDCGACEPVCPVEAIYYEDDV 60 (105)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSS--CE-EECT-TTCCCCCCSGGGCTTCCEEEGGGC
T ss_pred EEecccCCCCCcChhhhhcCccccCcCCC--cE-EEeC-CcCcchhhHHHhCCccCEEecCCC
Confidence 4677889988 99999999 56776653 22 2221 112224468899999999987553
No 60
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=95.41 E-value=0.0024 Score=54.43 Aligned_cols=65 Identities=9% Similarity=0.151 Sum_probs=44.6
Q ss_pred CccccCccccc--ccCcccCCCC-cceeecccccceEEccC-CCCHHHHH-----HHHHhCcccccccccchhhhhH
Q 024126 154 DHVFVDEFSCI--GCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 154 ~~v~vDe~~Ci--gcg~C~~~ap-~vF~~e~d~g~a~v~~q-~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~~l 221 (272)
..+.+|...|+ +|+.|...|| +...++++.+.. .. .+=.+.+. .++..||++||.+.+..++..+
T Consensus 99 g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~~~~~~~---~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~~~~~~ 172 (214)
T 1h0h_B 99 GCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQM---AKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEMEAM 172 (214)
T ss_dssp CCEEECGGGGGCSCHHHHHHHCTTCCCEECTTSSCE---ECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHHHHHH
T ss_pred CeEEEeHHHCccccccHHHHhcCCCCeEecCCCccc---CcCCCCcchhhcCCChhHHHhcCcccEEEccHHHHHHH
Confidence 35678999999 9999999999 456665542321 11 22112221 6899999999999988776543
No 61
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=95.39 E-value=0.0047 Score=56.72 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=41.3
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchh
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~ 217 (272)
..+.+|...|++|+.|..+|| +...+++..+....- ..=.+.+. .++..||++||.+.+..+
T Consensus 175 g~v~id~~kCigCg~Cv~aCP~~Ai~~~~~~~~~~kC--~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~d 242 (352)
T 2ivf_B 175 GIVLVDQERCKGHRHCVEACPYKAIYFNPVSQTSEKC--ILCYPRIEKGIANACNRQCPGRVRAFGYLDD 242 (352)
T ss_dssp CCEEECTTTCCCCCHHHHHCTTCCEEEETTTTEEEEC--CTTHHHHTTTBCCHHHHTCTTCCEEEEETTC
T ss_pred CeEEechhhcCCchHHHhhcCccceeccccccccccc--CCCcchhhcCCCChHHHhcCccceeccccch
Confidence 346778899999999999999 445555432322211 11112232 789999999999977654
No 62
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=95.23 E-value=0.00084 Score=63.10 Aligned_cols=59 Identities=27% Similarity=0.459 Sum_probs=39.9
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc-ccc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR-TSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~-~~~ 215 (272)
.+.+|...|++|+.|..+||. .+.+++ |....+.....+..+..++..||++||.+ ...
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~~~--~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~~~~~ 87 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTAAIFGEM--GEPHSIPHIEACINCGQCLTHCPENAIYEAQSW 87 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTCCCBCCT--TSCCBCCCGGGCCCCCTTGGGCTTCCEEESCCC
T ss_pred eEEECcccCCCccHHHHhcCcCceeccc--ccceeecChhhCCchhhHHHhhCcCCccccccc
Confidence 567899999999999999995 444443 33222211122234558999999999998 443
No 63
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=94.92 E-value=0.0021 Score=62.67 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=42.5
Q ss_pred CccccCcccccccCcccCCCCc-----ceeecccccc-eEEcc------CCCCHHHHHHHHHhCcccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGR-ARVYN------QCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~-----vF~~e~d~g~-a~v~~------q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+.+|...|++|+.|..+||. .+.+.++ |. ..+.. .......+..++..||++||.+...
T Consensus 138 ~~i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~~~~-g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~ 210 (574)
T 3c8y_A 138 KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNK-NGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSH 210 (574)
T ss_dssp SSEEEEGGGCCCCCHHHHHHHHHHSCCCSEEEEE-TTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECCC
T ss_pred CcceeCcccCcCCCCccchhCchhcCCceeeccC-CccceecccccceechhhCCcchhHHHhhccCCcccccc
Confidence 3678899999999999999995 5666554 32 22211 0122234568999999999998764
No 64
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=94.43 E-value=0.0037 Score=63.11 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=41.1
Q ss_pred CccccCcccccccCcccCCCCc-----ceeecccccceEEccC--CCCHHHHHHHHHhCcccccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~-----vF~~e~d~g~a~v~~q--~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+.+|..+||+|+.|..+|++ .+.+.+......+... ..++..+-.+++.||++||...+.
T Consensus 172 p~i~~d~~~CI~C~~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~ 240 (783)
T 3i9v_3 172 PFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTA 240 (783)
T ss_dssp TTEEECTTTCCCCCHHHHHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGGG
T ss_pred ccEEEchhhCCCccHHHHHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceecccc
Confidence 3567799999999999999954 3444433122222221 123556778999999999986654
No 65
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=92.51 E-value=0.032 Score=53.55 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=37.0
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRT 213 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~ 213 (272)
..+.+|...|++|+.|..+|| +...++.+.+....-...+ +.+. .++..||++||.+.
T Consensus 208 g~v~id~~kCigCg~Cv~~CP~~AI~~~~~~~~~~kC~~Cg--~ri~~G~~P~Cv~~CP~~Ai~~g 271 (512)
T 1q16_B 208 GIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCY--PRIEAGQPTVCSETCVGRIRYLG 271 (512)
T ss_dssp CCEEECTTTCCCCCCHHHHCTTCCEEEETTTTEEEECCTTH--HHHTTTCCCHHHHTCTTCCEEEE
T ss_pred CeEEECHHHCCCchHHHhhCCccceecccCCCCcccCcCCC--chhhcCCCCceEeeCchhhhhcc
Confidence 346678889999999999998 4455554433322111111 2221 78999999998865
No 66
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=91.35 E-value=0.03 Score=59.26 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=40.4
Q ss_pred cccCcccccccCcccCCCCcc-eee---ccc--------c-----------cc-eEEccCCCCHHHHHHHHHhCcc--cc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV-FKI---EED--------F-----------GR-ARVYNQCGINEFVQQAIESCPV--DC 209 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v-F~~---e~d--------~-----------g~-a~v~~q~g~~e~i~~Av~~CP~--~a 209 (272)
..+|...|++|+.|..+||.. ..+ +++ + |. ..+.....++..|-.++..||+ +|
T Consensus 681 p~~d~~kCi~Cg~Cv~vCP~~AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~Cv~vCP~~~~A 760 (1231)
T 2c42_A 681 PQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPKEKA 760 (1231)
T ss_dssp EEECTTTCCCCCHHHHHCSSCCEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHHCSSSSCS
T ss_pred eEEeCccCCchhhHHHhCCcccccccccchHHHhhCcccccccccccccccccccceeechhhCCChhHHHhhCCCCccC
Confidence 356889999999999999954 222 111 0 10 0111123344556699999999 99
Q ss_pred cccccchh
Q 024126 210 IHRTSAQQ 217 (272)
Q Consensus 210 I~~~~~~~ 217 (272)
|.++...+
T Consensus 761 I~~~~~~~ 768 (1231)
T 2c42_A 761 LVMQPLDT 768 (1231)
T ss_dssp EEEEEGGG
T ss_pred eEEecchh
Confidence 99887764
No 67
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=88.85 E-value=0.41 Score=39.76 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=38.9
Q ss_pred ccccCcccccccC--cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCK--NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg--~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.++...|++|+ .|..+|| ..+.++++ |... ++. .....+...+..||.+||.+...
T Consensus 50 ~~~~~~~~C~~C~~p~C~~~CP~gAi~~~~~-g~~~-id~-~~CigC~~C~~~CP~~Ai~~~~~ 110 (195)
T 2vpz_B 50 VVEFRPEQCLHCENPPCVPVCPTGASYQTKD-GLVL-VDP-KKCIACGACIAACPYDARYLHPA 110 (195)
T ss_dssp EEEEEEEECCCCSSCTTTTTCSSSCEEECTT-SCEE-ECT-TTCCCCCHHHHHCTTCCCEECTT
T ss_pred eEEECcccCcCccCcHHHHhcCCCceecccc-ccee-ecC-CCCCCcChhHhhCCCCCeEECCC
Confidence 4566788899999 6999999 44555443 5433 222 11223457889999999998654
No 68
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.58 E-value=0.35 Score=47.45 Aligned_cols=46 Identities=7% Similarity=0.071 Sum_probs=36.1
Q ss_pred cCCcccccCcCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 024126 69 ADDYYAVLGLLPDATP--EQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAV 122 (272)
Q Consensus 69 ~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~v 122 (272)
..|||.+||++.+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 3459999999776655 77999999999976554 4577888888876
No 69
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=87.01 E-value=0.077 Score=48.58 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=39.5
Q ss_pred ccccCcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg--~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.++...|++|+ .|..+||. .+..+++.|... ++. .....+..++..||.+||.+...
T Consensus 143 ~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g~v~-id~-~kCigCg~Cv~aCP~~Ai~~~~~ 204 (352)
T 2ivf_B 143 FFFYLARMCNHCTNPACLAACPTGAIYKREDNGIVL-VDQ-ERCKGHRHCVEACPYKAIYFNPV 204 (352)
T ss_dssp ECEEEEECCCCCSSCHHHHHCTTCCEEECTTTCCEE-ECT-TTCCCCCHHHHHCTTCCEEEETT
T ss_pred EEEECCCCCcCcCCccccccCCCCceeecCCCCeEE-ech-hhcCCchHHHhhcCccceecccc
Confidence 4567888999999 89999994 344443325433 322 22223558899999999987653
No 70
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=86.34 E-value=0.12 Score=50.16 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=39.5
Q ss_pred Ccccc------cccCcccCCCC-cceee-ccccc-c-eEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 159 DEFSC------IGCKNCNNVAP-EVFKI-EEDFG-R-ARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 159 De~~C------igcg~C~~~ap-~vF~~-e~d~g-~-a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
|...| ..|+.|..+|| .++++ +++.| . ..+++ ...+-.|..+...||+++|.|+.+
T Consensus 508 d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~-~~~Ci~C~~C~~~cp~~~i~~~~p 573 (584)
T 2gmh_A 508 DDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQIN-AQNCVHCKTCDIKDPSQNINWVVP 573 (584)
T ss_dssp STTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEEC-GGGCCCCCHHHHHCTTCCEEECCC
T ss_pred CcccchhhchhhhcchhhhcCChhhEEEeecCCCCceEEEEe-CCCCcCCCCchhhCCCCCceeECC
Confidence 66778 89999999999 77888 53225 1 22332 222334568999999999999765
No 71
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=85.22 E-value=0.097 Score=50.20 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=39.1
Q ss_pred ccccCcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126 155 HVFVDEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~Cigcg--~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.++...|++|+ .|..+||. .+.++++.|...+- + .....+..++..||++||.+...
T Consensus 176 ~i~~~~~~C~~C~~~~Cv~aCP~gAI~~~~~~g~v~id-~-~kCigCg~Cv~~CP~~AI~~~~~ 237 (512)
T 1q16_B 176 FMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLID-Q-DKCRGWRMCITGCPYKKIYFNWK 237 (512)
T ss_dssp CCEEEEECCCCCSSCHHHHTCTTCCEEEETTTCCEEEC-T-TTCCCCCCHHHHCTTCCEEEETT
T ss_pred eEEecCccCcCCCCchhhhhCCcCcEEeecCCCeEEEC-H-HHCCCchHHHhhCCccceecccC
Confidence 3566888999999 59999994 35454332543332 2 12223557889999999998653
No 72
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=76.13 E-value=0.53 Score=39.71 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=36.4
Q ss_pred ccCcccccccCc--ccCCCC---c-ceeecccccceEEccCCCCHH--HHHHHHHhCccccccccc
Q 024126 157 FVDEFSCIGCKN--CNNVAP---E-VFKIEEDFGRARVYNQCGINE--FVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 157 ~vDe~~Cigcg~--C~~~ap---~-vF~~e~d~g~a~v~~q~g~~e--~i~~Av~~CP~~aI~~~~ 214 (272)
..+...|++|+. |..+|| . .+..+++.|...+.. .... .+..++..||.+||.+..
T Consensus 66 ~~~~~~C~~C~~p~C~~~CP~~~~gAi~~~~~~g~v~id~--~~C~~~~C~~C~~~CP~~Ai~~~~ 129 (214)
T 1h0h_B 66 LFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTP--KTKDLEDYESVISACPYDVPRKVA 129 (214)
T ss_dssp EEEEECCCCCSSCHHHHHHTTTCTTSEEECTTTCCEEECG--GGGGCSCHHHHHHHCTTCCCEECT
T ss_pred eecCCcCcCcCCchhhccCCccccccEEecCCCCeEEEeH--HHCccccccHHHHhcCCCCeEecC
Confidence 445678999997 999998 3 233333225433221 1123 477899999999999865
No 73
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=73.18 E-value=0.55 Score=41.26 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=37.2
Q ss_pred cccCcccccccCc--ccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 156 VFVDEFSCIGCKN--CNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~Cigcg~--C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+......|.+|+. |..+||..+..+++ |.. ++++ .....+..++..||.+||.+..
T Consensus 61 ~~~~~~~C~~C~~p~C~~~CP~Ai~~~~~-g~v-~id~-~~CigC~~C~~~CP~~Ai~~~~ 118 (274)
T 1ti6_B 61 INYRPTPCMHCENAPCVAKGNGAVYQRED-GIV-LIDP-EKAKGKKELLDTCPYGVMYWNE 118 (274)
T ss_dssp EEEEEECCCCCTTCHHHHHTTTSEEECTT-SCE-EECT-TTTTTCGGGGGGCSSCCCEEET
T ss_pred eeEcCCcCCCCCChHHHhhChHHhhhccC-CcE-Eech-hhccchHHHHhhCccCCeEEEc
Confidence 4456678999998 99999983223332 543 3322 2233466789999999999864
No 74
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=72.38 E-value=1.2 Score=39.34 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=36.3
Q ss_pred cccCcccccccC--cccCCCCc--ceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126 156 VFVDEFSCIGCK--NCNNVAPE--VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~Cigcg--~C~~~ap~--vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+.++...|++|+ .|..+||. .+...++ |...+... ....+..++..||.++|.+..
T Consensus 93 ~~~~~~~C~~C~~~~C~~~CP~~gAi~~~~~-g~v~id~~--~CigCg~C~~~CP~~ai~~~~ 152 (294)
T 1kqf_B 93 WLIRKDGCMHCEDPGCLKACPSAGAIIQYAN-GIVDFQSE--NCIGCGYCIAGCPFNIPRLNK 152 (294)
T ss_dssp EEEEEESCCCBSSCHHHHHCCSTTSEEEETT-SCEEECGG--GCCCCCHHHHHCTTCCCEEET
T ss_pred EEECcccCCCcCChhhhhhCCccCccccccc-cceEeCcc--cCCCcchhhhcCCCCCcEecC
Confidence 345667899999 79999985 4444333 54332221 112244788899999998754
No 75
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=72.33 E-value=1.6 Score=32.00 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=20.7
Q ss_pred ccccCcccccccCcccCCCC-cceeecc
Q 024126 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEE 181 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap-~vF~~e~ 181 (272)
.+.+|...|++||.|..+|| +...+.+
T Consensus 31 ~~~i~~~~C~~Cg~C~~~CP~~ai~~~~ 58 (106)
T 7fd1_A 31 FLVIHPDECIDCALCEPECPAQAIFSED 58 (106)
T ss_dssp CEEECTTTCCCCCTTGGGCTTCCEEEGG
T ss_pred cEEECcccCCChhhhHHhCCChhhhccc
Confidence 35677888999999999999 4455544
No 76
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=65.25 E-value=2.8 Score=38.18 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=26.6
Q ss_pred cccCcccc-ccc--CcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126 156 VFVDEFSC-IGC--KNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~C-igc--g~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
+.+|...| .+| +.|...|| ....++++.+.. +++. ..+..+..++..||.+||..
T Consensus 200 p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~~-~id~-~~C~~Cg~C~~~CP~~Ai~~ 258 (366)
T 3mm5_B 200 PIPNDEAIRKTCEIPSTVAACPTGALKPDMKNKTI-KVDV-EKCMYCGNCYTMCPGMPLFD 258 (366)
T ss_dssp CCCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTEE-EECG-GGCCCCCHHHHHCTTCCCCC
T ss_pred eEEcchhccccccccchhccCCccceEecCCCCeE-EEeh-hhCCCcchHHHhCCHhhccc
Confidence 34455555 345 67777776 334444321222 2221 11223346667777777643
No 77
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=60.05 E-value=2.2 Score=39.78 Aligned_cols=23 Identities=26% Similarity=0.726 Sum_probs=16.8
Q ss_pred CccccCcccccccCcccCCCCcc
Q 024126 154 DHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap~v 176 (272)
..+.+|...|++|+.|..+||.-
T Consensus 277 ~~~~id~~~Ci~Cg~Ci~~CP~~ 299 (418)
T 3mm5_A 277 KELTIDNRECVRCMHCINKMPKA 299 (418)
T ss_dssp SCEEECTTTCCCCCHHHHHCTTT
T ss_pred ceeEEChhhcCccChhHHhCcHh
Confidence 34566777788888888888764
No 78
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=59.26 E-value=2.1 Score=39.36 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=9.2
Q ss_pred HHHHHHHhCccccccc
Q 024126 197 FVQQAIESCPVDCIHR 212 (272)
Q Consensus 197 ~i~~Av~~CP~~aI~~ 212 (272)
.+..++..||.+||..
T Consensus 260 ~Cg~C~~~CP~~Ai~~ 275 (386)
T 3or1_B 260 YCGNCYTMCPALPLSD 275 (386)
T ss_dssp CCCHHHHHCTTCCCCC
T ss_pred ccccHHHhCcHhhCcC
Confidence 3445666666666654
No 79
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=58.44 E-value=2.9 Score=30.34 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=32.7
Q ss_pred cccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
+.+|...|++|+.|..+||. ...+.+... ..++.. -..+...--..+||.+++.+.+..
T Consensus 32 ~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~-~~~~~~-~~~d~~~~~~~~~~~ga~~~g~~~ 91 (105)
T 2v2k_A 32 LYIHPDECVDCGACEPVCPVEAIYYEDDVP-DQWSSY-AQANADFFAELGSPGGASKVGQTD 91 (105)
T ss_dssp EEECTTTCCCCCCSGGGCTTCCEEEGGGCC-GGGTTH-HHHHHHTTTTTCCCSCHHHHCSCS
T ss_pred EEEeCCcCcchhhHHHhCCccCEEecCCCh-HHHHHH-HHhchHHHhhcCCCcceEEeecCC
Confidence 56688889999999999995 344443200 000000 000111111268999998876554
No 80
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=55.93 E-value=1.9 Score=42.09 Aligned_cols=21 Identities=38% Similarity=0.915 Sum_probs=18.3
Q ss_pred CccccCcccccccCcccCCCC
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap 174 (272)
...++.|..|||||.|+.-||
T Consensus 46 ~~~~i~~~~c~~~~~~~~~cp 66 (608)
T 3j16_B 46 KIAFISEILCIGCGICVKKCP 66 (608)
T ss_dssp TEEEECTTTCCCCCHHHHHCS
T ss_pred CceEEehhhccccccccccCC
Confidence 456788899999999999998
No 81
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=53.11 E-value=3.2 Score=29.88 Aligned_cols=20 Identities=45% Similarity=0.730 Sum_probs=16.9
Q ss_pred cccCcccccccCcccCCCCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~ 175 (272)
+.++...|++|+.|..+||.
T Consensus 76 ~~~~~~~C~~Cg~C~~~CP~ 95 (103)
T 1xer_A 76 DPVNEQACIFCMACVNVCPV 95 (103)
T ss_dssp ECTTGGGCCCCCHHHHHCTT
T ss_pred eecCcccccChhhHHHhccc
Confidence 34677889999999999994
No 82
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=52.46 E-value=2.8 Score=33.46 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=19.5
Q ss_pred cccCcccccccCcccCCCCcc-eeecc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV-FKIEE 181 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v-F~~e~ 181 (272)
+.++...|++|+.|..+||.. ..+.+
T Consensus 91 ~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 117 (182)
T 3i9v_9 91 YEINMLRCIFCGLCEEACPTGAIVLGY 117 (182)
T ss_dssp EEEETTTCCCCCHHHHHCSSSCEEECS
T ss_pred eecCCCcCcChhChhhhCCccceEecC
Confidence 345778899999999999943 44444
No 83
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=50.91 E-value=3.3 Score=35.98 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=49.9
Q ss_pred cccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhhhceeeecCCCCC
Q 024126 164 IGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGS 242 (272)
Q Consensus 164 igcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~~~v~~~~~g~g~ 242 (272)
.+|+.|...|| .++.+++ +...+.+. .....+..++..|| +||.+....+--.+ .|.- -|.
T Consensus 174 ~~C~~C~~~CP~g~I~id~--~~~v~~d~-~~C~~C~~C~~vCp-~aI~~~~~~d~~i~----------~VEt----~Gs 235 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELKD--GKLSVKNE-LSCTLCEECLRYCN-GSIRISFVEDKYIL----------EIES----VGS 235 (265)
T ss_dssp SCCTTHHHHCTTCCEEEET--TEEEESCG-GGCCCCCHHHHHHT-TSEEEEEEEEEEEE----------EEEE----CSS
T ss_pred hhHHHHHHhCcccCeEecC--CeeEEecc-ccCCCchHHHHhCC-CceEEEecCCeEEE----------Eecc----CCC
Confidence 78999999998 6788876 33433321 11223446778899 89987654321111 1221 133
Q ss_pred -CcchhHHHHHHHHHhHHHHHHHH
Q 024126 243 -GSADVFRMASSRWERRQAKVLVC 265 (272)
Q Consensus 243 -~~~~~f~~~~~~~~~~~~~~~~~ 265 (272)
...+.+..|...++..-..+.+.
T Consensus 236 l~Pee~v~~A~~iL~~~~~~~~~~ 259 (265)
T 2pa8_D 236 LKPERILLEAGKSIIRKIEELEKK 259 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888877776666555443
No 84
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=50.82 E-value=2.5 Score=38.56 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.3
Q ss_pred CCccccCcccccccCcccCCCCc
Q 024126 153 KDHVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 153 ~~~v~vDe~~Cigcg~C~~~ap~ 175 (272)
...+.+|...|++||.|..+||.
T Consensus 231 ~~~~~id~~~C~~Cg~C~~~CP~ 253 (366)
T 3mm5_B 231 NKTIKVDVEKCMYCGNCYTMCPG 253 (366)
T ss_dssp TTEEEECGGGCCCCCHHHHHCTT
T ss_pred CCeEEEehhhCCCcchHHHhCCH
Confidence 35678899999999999999996
No 85
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=43.37 E-value=5.5 Score=37.28 Aligned_cols=25 Identities=32% Similarity=0.737 Sum_probs=20.3
Q ss_pred ccccCcccccccCcccCCCCcceee
Q 024126 155 HVFVDEFSCIGCKNCNNVAPEVFKI 179 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~vF~~ 179 (272)
.+.+|...|+.|++|..+||.--..
T Consensus 295 ~l~Id~~~C~~Cg~Ci~~CP~al~~ 319 (437)
T 3or1_A 295 TLSIDNKNCTRCMHCINTMPRALKI 319 (437)
T ss_dssp EEEECGGGCCCCSHHHHHCTTTEEC
T ss_pred EEEEccccCCchhhhHhhCcHhhcc
Confidence 4667999999999999999964333
No 86
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=42.62 E-value=4.1 Score=32.11 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=17.2
Q ss_pred cccCcccccccCcccCCCCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~ 175 (272)
+.+|...|++|+.|..+||.
T Consensus 40 ~~id~~~C~~Cg~Cv~~CP~ 59 (150)
T 1jnr_B 40 YNREPDMCWECYSCVKMCPQ 59 (150)
T ss_dssp EESCGGGCCCCCHHHHHCTT
T ss_pred eeeCcccCcCHhHHHHhCCc
Confidence 35678889999999999994
No 87
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=42.40 E-value=4.1 Score=37.43 Aligned_cols=17 Identities=18% Similarity=0.606 Sum_probs=13.5
Q ss_pred HHHHHHhCccccccccc
Q 024126 198 VQQAIESCPVDCIHRTS 214 (272)
Q Consensus 198 i~~Av~~CP~~aI~~~~ 214 (272)
+-.++..||++||.+.+
T Consensus 224 ~~~cv~~CPt~AI~~~~ 240 (386)
T 3or1_B 224 IPLAVAACPTAAVKPIT 240 (386)
T ss_dssp HHHHHHHCTTCCEEEEE
T ss_pred chhhhhhCchhhccccc
Confidence 35788999999998853
No 88
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=40.25 E-value=4.6 Score=42.70 Aligned_cols=20 Identities=30% Similarity=1.117 Sum_probs=17.6
Q ss_pred cccCcccccccCcccCCCCc
Q 024126 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~ 175 (272)
+.++...|++||.|..+||.
T Consensus 737 ~~v~~~~C~gCG~Cv~vCP~ 756 (1231)
T 2c42_A 737 IQINTLDCMGCGNCADICPP 756 (1231)
T ss_dssp EEECTTTCCCCCHHHHHCSS
T ss_pred eeechhhCCChhHHHhhCCC
Confidence 34778899999999999997
No 89
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=38.70 E-value=9.5 Score=35.26 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=16.2
Q ss_pred CcccccccCcccCCCCcc
Q 024126 159 DEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 159 De~~Cigcg~C~~~ap~v 176 (272)
|...|++||.|..+||..
T Consensus 62 ~~~~C~~Cg~C~~~CP~~ 79 (421)
T 1hfe_L 62 HIEACINCGQCLTHCPEN 79 (421)
T ss_dssp CGGGCCCCCTTGGGCTTC
T ss_pred ChhhCCchhhHHHhhCcC
Confidence 888999999999999954
No 90
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=38.46 E-value=5.3 Score=32.06 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=17.3
Q ss_pred cccCcccccccCcccCCCCcc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v 176 (272)
+.+|...|++|+.|..+||..
T Consensus 39 ~~~d~~~C~~Cg~Cv~~CP~~ 59 (166)
T 3gyx_B 39 FNQEPEACWECYSCIKICPQG 59 (166)
T ss_dssp EESCGGGCCCCCHHHHHCSSC
T ss_pred EecCcccCcccChHhHhCCcc
Confidence 346778899999999999843
No 91
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=36.33 E-value=9 Score=33.12 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=20.5
Q ss_pred cccCcccccccCcccCCCCcceeeccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKIEED 182 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~e~d 182 (272)
+.+|...|++|+.|..+||.-+.+..+
T Consensus 196 v~~d~~~C~~C~~C~~vCp~aI~~~~~ 222 (265)
T 2pa8_D 196 SVKNELSCTLCEECLRYCNGSIRISFV 222 (265)
T ss_dssp EESCGGGCCCCCHHHHHHTTSEEEEEE
T ss_pred EEeccccCCCchHHHHhCCCceEEEec
Confidence 345778899999999999965555543
No 92
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=35.16 E-value=10 Score=31.88 Aligned_cols=21 Identities=24% Similarity=0.646 Sum_probs=17.2
Q ss_pred cccCcccccccCcccCCCCcc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v 176 (272)
+..+...||+||.|..+||..
T Consensus 142 ~~~~~~~Ci~Cg~C~~~CP~~ 162 (238)
T 2wdq_B 142 KLDGLYECILCACCSTSCPSF 162 (238)
T ss_dssp TTTTTTTCCCCCTTGGGCHHH
T ss_pred HHhccccccccCCchhhCcCC
Confidence 345778899999999999854
No 93
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=33.42 E-value=11 Score=32.08 Aligned_cols=20 Identities=25% Similarity=0.687 Sum_probs=16.2
Q ss_pred ccCcccccccCcccCCCCcc
Q 024126 157 FVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 157 ~vDe~~Cigcg~C~~~ap~v 176 (272)
..+...||+||.|..+||..
T Consensus 152 ~~~~~~Ci~CG~C~~~CP~~ 171 (252)
T 2h88_B 152 LDGLYECILCACCSTSCPSY 171 (252)
T ss_dssp TTTTTTCCCCCTTGGGCHHH
T ss_pred hHhHHhchhhCcchhhCCCC
Confidence 34567899999999999853
No 94
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=30.84 E-value=26 Score=27.29 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=28.3
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCC
Q 024126 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDL 102 (272)
Q Consensus 71 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~ 102 (272)
-++..|.|....+.+|++++-..+..++|||-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 34778888889999999999999999999984
No 95
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=30.68 E-value=0.87 Score=46.06 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=32.6
Q ss_pred cccCcccccccCcccCCCCcceeeccc-----ccceEEccC-CCCHHHHHHHHHhCccccccc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEVFKIEED-----FGRARVYNQ-CGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~vF~~e~d-----~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~ 212 (272)
+..+...|++||.|..+||....+.+- .|....+.. ...+..+..++..||++++..
T Consensus 410 i~~~~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~~~~~~~~~~~Ci~Cg~C~~vCP~ga~~~ 472 (807)
T 3cf4_A 410 LVNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHDTCIGCRRCEQVCKKEIPIL 472 (807)
T ss_dssp HHHHHHHCCCCCHHHHHCTTCCCHHHHHHHHHTTCTHHHHHHHHHCCCCCHHHHHCTTCCCHH
T ss_pred HHHhHHhCCCCCchhhhCCCCCchHHHHHHHHcCChhhhhhchhhccchhhHHHhCCCCCChH
Confidence 344677899999999999976543220 011000000 001113347889999998764
No 96
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=29.23 E-value=8.8 Score=37.31 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=16.7
Q ss_pred CccccCcccccccCcccCCCC
Q 024126 154 DHVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 154 ~~v~vDe~~Cigcg~C~~~ap 174 (272)
...++.+..|+|||.|..-||
T Consensus 60 ~~~~i~e~~c~gc~~~~~~~p 80 (607)
T 3bk7_A 60 YKPIIQEASCTGCGICVHKCP 80 (607)
T ss_dssp TEEEECTTTCCCCCHHHHHCS
T ss_pred CcceeeecccCccccccCCCC
Confidence 445677888999999987666
No 97
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=27.84 E-value=8 Score=32.64 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=17.4
Q ss_pred cccCcccccccCcccCCCCcc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v 176 (272)
...|...|++||.|..+||..
T Consensus 141 ~~~~~~~Ci~Cg~C~~~CP~~ 161 (243)
T 1kf6_B 141 KYHQFSGCINCGLCYAACPQF 161 (243)
T ss_dssp TTGGGGCCCCCCHHHHHCHHH
T ss_pred HhhhhhhccccCccccccCCC
Confidence 346778899999999999854
No 98
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=25.08 E-value=12 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.770 Sum_probs=18.2
Q ss_pred ccccCcccccccCcccCCCCc
Q 024126 155 HVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 155 ~v~vDe~~Cigcg~C~~~ap~ 175 (272)
.+.+|...|+.||.|...||.
T Consensus 545 ~~~i~~~~Ci~C~~C~~~cp~ 565 (584)
T 2gmh_A 545 RLQINAQNCVHCKTCDIKDPS 565 (584)
T ss_dssp EEEECGGGCCCCCHHHHHCTT
T ss_pred EEEEeCCCCcCCCCchhhCCC
Confidence 466888899999999999983
No 99
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=24.53 E-value=13 Score=35.90 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=17.7
Q ss_pred cccCcccccccCcccCCCCcc
Q 024126 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~Cigcg~C~~~ap~v 176 (272)
..+|...|++||.|..+||..
T Consensus 183 ~~i~~~~Ci~Cg~Cv~~CP~g 203 (574)
T 3c8y_A 183 KCFDDTNCLLCGQCIIACPVA 203 (574)
T ss_dssp CCGGGSSCCCCCHHHHHCSST
T ss_pred ceechhhCCcchhHHHhhccC
Confidence 456888999999999999943
No 100
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=23.87 E-value=22 Score=31.10 Aligned_cols=17 Identities=29% Similarity=0.933 Sum_probs=14.4
Q ss_pred ccccccCcccCCCCcce
Q 024126 161 FSCIGCKNCNNVAPEVF 177 (272)
Q Consensus 161 ~~Cigcg~C~~~ap~vF 177 (272)
..||.||.|...||-.-
T Consensus 180 ~~CI~CG~C~~aCP~~~ 196 (282)
T 3vr8_B 180 YECILCACCSASCPSYW 196 (282)
T ss_pred hhCcccCcCcccCCcee
Confidence 45999999999999653
Done!