Query 024127
Match_columns 272
No_of_seqs 205 out of 387
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 18:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 91.8 0.31 1.1E-05 36.0 5.4 32 80-111 26-57 (72)
2 3nmd_A CGMP dependent protein 78.7 4.1 0.00014 30.0 5.4 34 78-111 31-64 (72)
3 2oqq_A Transcription factor HY 71.8 10 0.00035 25.0 5.4 25 80-104 6-30 (42)
4 1lq7_A Alpha3W; three helix bu 71.0 8.4 0.00029 26.9 5.1 34 77-110 25-64 (67)
5 1zxa_A CGMP-dependent protein 59.5 19 0.00064 26.0 5.3 35 78-112 16-50 (67)
6 3he4_B Synzip5; heterodimeric 53.6 39 0.0013 21.9 5.5 27 78-104 4-30 (46)
7 3he4_B Synzip5; heterodimeric 52.2 22 0.00075 23.1 4.1 20 87-106 6-25 (46)
8 4egx_A Kinesin-like protein KI 51.0 21 0.00071 30.1 5.1 26 92-117 28-53 (184)
9 2oqq_A Transcription factor HY 49.5 24 0.00083 23.2 4.0 24 86-109 5-28 (42)
10 3a7o_A Autophagy protein 16; c 47.1 29 0.00099 25.4 4.5 27 82-108 20-46 (75)
11 2b5u_A Colicin E3; high resolu 41.5 29 0.00098 34.2 4.9 19 78-96 292-310 (551)
12 2do5_A Splicing factor 3B subu 34.5 50 0.0017 22.7 3.9 25 99-123 31-55 (58)
13 2yy0_A C-MYC-binding protein; 33.6 63 0.0022 21.9 4.4 27 80-106 22-48 (53)
14 1t6f_A Geminin; coiled-coil, c 32.8 69 0.0024 20.4 4.1 18 81-98 8-25 (37)
15 1zxa_A CGMP-dependent protein 31.8 47 0.0016 23.9 3.6 18 86-103 31-48 (67)
16 3a7o_A Autophagy protein 16; c 31.5 93 0.0032 22.7 5.1 29 80-108 25-53 (75)
17 2f95_B Sensory rhodopsin II tr 29.9 11 0.00038 29.1 0.0 8 117-124 156-163 (163)
18 2js5_A Uncharacterized protein 29.6 25 0.00086 25.7 1.9 17 131-147 27-43 (71)
19 3p01_A Two-component response 29.2 35 0.0012 26.7 3.0 18 79-96 12-29 (184)
20 1k1f_A Breakpoint cluster regi 27.8 79 0.0027 22.8 4.2 20 85-104 31-50 (72)
21 3ktp_B Trinucleotide repeat-co 27.7 20 0.00068 20.5 0.8 10 120-129 4-14 (22)
22 2qdq_A Talin-1; dimerisation d 26.4 72 0.0025 21.7 3.6 20 85-104 13-32 (50)
23 2q2f_A Selenoprotein S; anti-p 25.3 1.1E+02 0.0037 23.1 4.8 21 83-103 54-74 (89)
24 2lw1_A ABC transporter ATP-bin 25.3 1.1E+02 0.0037 22.4 4.8 27 85-111 20-46 (89)
25 3p01_A Two-component response 24.8 62 0.0021 25.2 3.6 23 83-105 9-31 (184)
26 3qh9_A Liprin-beta-2; coiled-c 24.5 65 0.0022 24.0 3.4 12 93-104 60-71 (81)
27 2pnv_A Small conductance calci 23.3 1.2E+02 0.004 19.9 4.1 25 80-104 12-36 (43)
28 2yy0_A C-MYC-binding protein; 22.8 80 0.0027 21.4 3.3 20 80-99 29-48 (53)
29 3t97_B Nuclear pore complex pr 22.6 1.2E+02 0.0042 21.6 4.4 27 80-106 20-46 (65)
30 1a93_A Coiled coil, LZ, MYC pr 22.6 1.4E+02 0.0047 18.7 4.1 22 85-106 8-29 (34)
31 2axc_A Colicin E7; translocati 22.6 58 0.002 29.3 3.3 21 78-98 233-253 (264)
32 2oxj_A Hybrid alpha/beta pepti 22.4 1.5E+02 0.0051 18.5 4.4 23 79-101 3-25 (34)
33 3csx_A Putative uncharacterize 22.4 20 0.00067 26.9 0.2 19 130-148 38-56 (81)
34 3nr7_A DNA-binding protein H-N 21.8 1.5E+02 0.0053 22.0 5.1 25 92-116 50-74 (86)
35 1nhl_A Synaptosomal-associated 21.3 1.9E+02 0.0065 19.2 5.1 32 77-108 18-49 (54)
36 1y66_A Engrailed homeodomain; 21.0 63 0.0022 21.4 2.4 17 80-96 6-22 (52)
37 1q08_A Zn(II)-responsive regul 20.8 1.1E+02 0.0037 22.1 4.1 26 81-106 43-68 (99)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.81 E-value=0.31 Score=35.99 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAA 111 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~~re~~~~ 111 (272)
..|++|.+||..|++.+++.|.+|..++..++
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777787777777777777776665544
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=78.68 E-value=4.1 Score=29.98 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAA 111 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~ 111 (272)
+-+||.+|++.++.+|.+|+++|.+++.-..++.
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777765444443
No 3
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=71.79 E-value=10 Score=24.97 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 80 ADLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
.||+.|.++|+.|-+||+.|-.-|+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888887766554
No 4
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=70.96 E-value=8.4 Score=26.92 Aligned_cols=34 Identities=38% Similarity=0.526 Sum_probs=25.9
Q ss_pred cchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 024127 77 DTAADLKKKEKELQAKEAEL------RRREQDVRRKEEAA 110 (272)
Q Consensus 77 ~~~~el~~ke~EL~~rE~EL------~rRE~el~~re~~~ 110 (272)
.+-++|+++=+||.++-+|| ++-|++.+..|+++
T Consensus 25 grieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 25 GRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 35678999999999998887 56777777666554
No 5
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=59.47 E-value=19 Score=26.00 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024127 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAAR 112 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~ 112 (272)
-++.++.|++.....|.+|+.+++++++...++.+
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888887764444443
No 6
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=53.60 E-value=39 Score=21.95 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 78 TAADLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
+.+||+..-+||+.|.+||+...+.|+
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 346788888888888888877555554
No 7
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.19 E-value=22 Score=23.15 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024127 87 KELQAKEAELRRREQDVRRK 106 (272)
Q Consensus 87 ~EL~~rE~EL~rRE~el~~r 106 (272)
+||+.--+||++|..||++.
T Consensus 6 kelknyiqeleernaelknl 25 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhH
Confidence 35555555555555555443
No 8
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=50.96 E-value=21 Score=30.11 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024127 92 KEAELRRREQDVRRKEEAAARAGIVL 117 (272)
Q Consensus 92 rE~EL~rRE~el~~re~~~~~~g~~~ 117 (272)
||+.|++-|+..+.|+.++++.|...
T Consensus 28 WeeKl~~te~~~~e~~~~l~~~gi~~ 53 (184)
T 4egx_A 28 WEEKLRRTEAIRMEREALLAEMGVAM 53 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 55556555554456777777777543
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=49.51 E-value=24 Score=23.19 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 86 EKELQAKEAELRRREQDVRRKEEA 109 (272)
Q Consensus 86 e~EL~~rE~EL~rRE~el~~re~~ 109 (272)
-.||+.|+.+|+.|-.||..|-.-
T Consensus 5 l~eLE~r~k~le~~naeLEervst 28 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLST 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888766543
No 10
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=47.06 E-value=29 Score=25.39 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 82 LKKKEKELQAKEAELRRREQDVRRKEE 108 (272)
Q Consensus 82 l~~ke~EL~~rE~EL~rRE~el~~re~ 108 (272)
+..-++||..||.|+++.++.++-+..
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~k 46 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNK 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666777777777776666654443
No 11
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=41.51 E-value=29 Score=34.19 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 024127 78 TAADLKKKEKELQAKEAEL 96 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL 96 (272)
+..++++||||-+|+++|-
T Consensus 292 t~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 292 SPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5678888888888888776
No 12
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.49 E-value=50 Score=22.70 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcCCCC
Q 024127 99 REQDVRRKEEAAARAGIVLEEKNWP 123 (272)
Q Consensus 99 RE~el~~re~~~~~~g~~~~~~NwP 123 (272)
||+-+.|.+--.++.|....++|-|
T Consensus 31 REElvdRLk~Y~~QtGi~lnkP~~~ 55 (58)
T 2do5_A 31 REELVERLQSYTRQTGIVLNRPSGP 55 (58)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTTCS
T ss_pred HHHHHHHHHHHhhccceeecCCCCC
Confidence 4433333333334457665566655
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.56 E-value=63 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 80 ADLKKKEKELQAKEAELRRREQDVRRK 106 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~~r 106 (272)
+.|++.-+||++|-++|.++-+++++|
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777777777676654
No 14
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=32.82 E-value=69 Score=20.36 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024127 81 DLKKKEKELQAKEAELRR 98 (272)
Q Consensus 81 el~~ke~EL~~rE~EL~r 98 (272)
|-.|-.++++.|.+|+.+
T Consensus 8 ENekLhk~ie~KdeeIa~ 25 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIAR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667778888887776
No 15
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.84 E-value=47 Score=23.91 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024127 86 EKELQAKEAELRRREQDV 103 (272)
Q Consensus 86 e~EL~~rE~EL~rRE~el 103 (272)
|.+|+.|.+|+++...+|
T Consensus 31 E~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 31 EKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555544444
No 16
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=31.49 E-value=93 Score=22.70 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 80 ADLKKKEKELQAKEAELRRREQDVRRKEE 108 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~~re~ 108 (272)
++|..|+.|..+.++.+.-|.++..+..+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLND 53 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLND 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhH
Confidence 56777777777777777666555554433
No 17
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=29.86 E-value=11 Score=29.07 Aligned_cols=8 Identities=0% Similarity=-0.101 Sum_probs=0.0
Q ss_pred CCcCCCCC
Q 024127 117 LEEKNWPP 124 (272)
Q Consensus 117 ~~~~NwPp 124 (272)
+.++..||
T Consensus 156 ~~~~~~~~ 163 (163)
T 2f95_B 156 SHHHHHHH 163 (163)
T ss_dssp --------
T ss_pred CCccccCC
Confidence 34455554
No 18
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=29.63 E-value=25 Score=25.65 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=9.5
Q ss_pred ccccccchhhHHHHHHH
Q 024127 131 HDIANEIPIHLQRLQYV 147 (272)
Q Consensus 131 ~DI~~eIP~~~q~~v~~ 147 (272)
||+++|+|...+++.-+
T Consensus 27 HDLaEdLP~~w~~i~~v 43 (71)
T 2js5_A 27 HDLAEDLPTGWNRIMEV 43 (71)
T ss_dssp HHHHHSTTTSGGGHHHH
T ss_pred HHHhccchhhHHHHHHH
Confidence 56666666655554433
No 19
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=29.22 E-value=35 Score=26.72 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 024127 79 AADLKKKEKELQAKEAEL 96 (272)
Q Consensus 79 ~~el~~ke~EL~~rE~EL 96 (272)
-++|+++.+||+++++++
T Consensus 12 ~~~l~~~~~~l~~~~~~~ 29 (184)
T 3p01_A 12 YDLLKQRTEELRRANAQM 29 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555444443
No 20
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=27.79 E-value=79 Score=22.84 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024127 85 KEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 85 ke~EL~~rE~EL~rRE~el~ 104 (272)
-|.||++=.+.++|.|+|+.
T Consensus 31 iEqeLe~Ck~sIrrLE~evn 50 (72)
T 1k1f_A 31 IEQELERAKASIRRLEQEVN 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45556655555566666553
No 21
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=27.73 E-value=20 Score=20.51 Aligned_cols=10 Identities=60% Similarity=1.471 Sum_probs=6.8
Q ss_pred CCCCC-CCccc
Q 024127 120 KNWPP-FFPII 129 (272)
Q Consensus 120 ~NwPp-f~P~~ 129 (272)
.|||| |.|-+
T Consensus 4 ~sWpPef~pg~ 14 (22)
T 3ktp_B 4 INWPPEFHPGV 14 (26)
T ss_pred ccCCcccccCC
Confidence 68999 55543
No 22
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=26.35 E-value=72 Score=21.70 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024127 85 KEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 85 ke~EL~~rE~EL~rRE~el~ 104 (272)
.++++-|+|.||+.-.+.|.
T Consensus 13 Aqe~iLr~ErELEeAr~~La 32 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLA 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555567777766444553
No 23
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=25.32 E-value=1.1e+02 Score=23.10 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024127 83 KKKEKELQAKEAELRRREQDV 103 (272)
Q Consensus 83 ~~ke~EL~~rE~EL~rRE~el 103 (272)
.|.|+||++++++-+.+.+++
T Consensus 54 lRMQEeldAqAe~~keKQkql 74 (89)
T 2q2f_A 54 LKMQEELNAQVEKHKEKLKQL 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888776655444
No 24
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.27 E-value=1.1e+02 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 85 KEKELQAKEAELRRREQDVRRKEEAAA 111 (272)
Q Consensus 85 ke~EL~~rE~EL~rRE~el~~re~~~~ 111 (272)
-++||+..++++.+.|+++..-+..++
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777776665544
No 25
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=24.75 E-value=62 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024127 83 KKKEKELQAKEAELRRREQDVRR 105 (272)
Q Consensus 83 ~~ke~EL~~rE~EL~rRE~el~~ 105 (272)
.+..+||+++++||++++++++-
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~ 31 (184)
T 3p01_A 9 AETYDLLKQRTEELRRANAQMSL 31 (184)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999988877654
No 26
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.53 E-value=65 Score=24.02 Aligned_cols=12 Identities=0% Similarity=0.385 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 024127 93 EAELRRREQDVR 104 (272)
Q Consensus 93 E~EL~rRE~el~ 104 (272)
.+.|..++.+++
T Consensus 60 q~qLe~kd~ei~ 71 (81)
T 3qh9_A 60 QEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhhHHHHH
Confidence 333333333333
No 27
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.28 E-value=1.2e+02 Score=19.91 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 80 ADLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
.|+..++++|++|-.-|+.|=..|.
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4677777777777666665544443
No 28
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.78 E-value=80 Score=21.40 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024127 80 ADLKKKEKELQAKEAELRRR 99 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rR 99 (272)
++|++|-++|.++-+||++|
T Consensus 29 ~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666555555543
No 29
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.64 E-value=1.2e+02 Score=21.59 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 80 ADLKKKEKELQAKEAELRRREQDVRRK 106 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~~r 106 (272)
.||+++...-..|-+|.+||-.||..|
T Consensus 20 ~eLq~~~~~~~aki~e~krkl~eLsHR 46 (65)
T 3t97_B 20 SELQKNQTTTMAKIAQYKRKLMDLSHR 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356666666666666666666666544
No 30
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=22.63 E-value=1.4e+02 Score=18.70 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024127 85 KEKELQAKEAELRRREQDVRRK 106 (272)
Q Consensus 85 ke~EL~~rE~EL~rRE~el~~r 106 (272)
.|..|..-.+.|++|.+.|.+|
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~k 29 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555443
No 31
>2axc_A Colicin E7; translocation domain, hydrolase; 1.70A {Escherichia coli str}
Probab=22.59 E-value=58 Score=29.26 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 024127 78 TAADLKKKEKELQAKEAELRR 98 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~r 98 (272)
+.++++|||||-+|+++|-++
T Consensus 233 t~~e~kqrqeee~k~~qew~~ 253 (264)
T 2axc_A 233 TPAQVKQRQDEEKRLQQEWND 253 (264)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 556788887777766666554
No 32
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.42 E-value=1.5e+02 Score=18.52 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024127 79 AADLKKKEKELQAKEAELRRREQ 101 (272)
Q Consensus 79 ~~el~~ke~EL~~rE~EL~rRE~ 101 (272)
...|+.|-+||..+..+|+..-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 34577777888777777764333
No 33
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=22.35 E-value=20 Score=26.86 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=11.1
Q ss_pred cccccccchhhHHHHHHHH
Q 024127 130 HHDIANEIPIHLQRLQYVA 148 (272)
Q Consensus 130 y~DI~~eIP~~~q~~v~~~ 148 (272)
.||+++|+|...+++.-++
T Consensus 38 LHDLaEdLP~~w~~i~~vA 56 (81)
T 3csx_A 38 LHDLAEGLPTDYENLVETA 56 (81)
T ss_dssp HHHHHHHTTTTGGGHHHHH
T ss_pred HHHHHccchhhHHHHHHHH
Confidence 3666666666666554443
No 34
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.78 E-value=1.5e+02 Score=21.97 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q 024127 92 KEAELRRREQDVRRKEEAAARAGIV 116 (272)
Q Consensus 92 rE~EL~rRE~el~~re~~~~~~g~~ 116 (272)
.+++.+.|++.+..--+.+...|+.
T Consensus 50 ~~~~~~er~~Kl~~~~e~l~~~GI~ 74 (86)
T 3nr7_A 50 AAAEVEERTRKLQQYREMLIADGID 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444555554322344455643
No 35
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=21.26 E-value=1.9e+02 Score=19.25 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 77 DTAADLKKKEKELQAKEAELRRREQDVRRKEE 108 (272)
Q Consensus 77 ~~~~el~~ke~EL~~rE~EL~rRE~el~~re~ 108 (272)
.+..+|.+..|.|++-++.|+..+..+++-+.
T Consensus 18 ~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k 49 (54)
T 1nhl_A 18 KTITMLDEQKEQLNRIEEGLDQINKDMRETEK 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHH
Confidence 34456777777777777777777777765443
No 36
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=21.04 E-value=63 Score=21.43 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024127 80 ADLKKKEKELQAKEAEL 96 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL 96 (272)
+|.++|-+|..||-+|+
T Consensus 6 eeverklkefvrrhqei 22 (52)
T 1y66_A 6 EEVERKLKEFVRRHQEI 22 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666665555
No 37
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.77 E-value=1.1e+02 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024127 81 DLKKKEKELQAKEAELRRREQDVRRK 106 (272)
Q Consensus 81 el~~ke~EL~~rE~EL~rRE~el~~r 106 (272)
-|+++.++|+++-++|++..+.|...
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777766666543
Done!