Query 024129
Match_columns 272
No_of_seqs 244 out of 1491
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 18:41:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 69.1 2.3 7.9E-05 29.0 1.9 27 158-184 18-44 (56)
2 3j21_g 50S ribosomal protein L 63.9 3.3 0.00011 27.7 1.8 27 158-184 13-39 (51)
3 1z2q_A LM5-1; membrane protein 63.8 6.3 0.00022 28.5 3.5 24 159-182 21-46 (84)
4 1x4u_A Zinc finger, FYVE domai 61.9 3.9 0.00013 29.6 2.1 23 159-181 14-38 (84)
5 1vfy_A Phosphatidylinositol-3- 60.7 3.7 0.00013 29.0 1.7 23 160-182 12-36 (73)
6 1dvp_A HRS, hepatocyte growth 58.0 4 0.00014 34.8 1.8 24 160-183 162-187 (220)
7 1joc_A EEA1, early endosomal a 56.1 4.8 0.00016 31.6 1.8 24 159-182 69-94 (125)
8 2yw8_A RUN and FYVE domain-con 55.2 5.2 0.00018 28.9 1.7 24 159-182 19-44 (82)
9 1wfk_A Zinc finger, FYVE domai 52.5 5.5 0.00019 29.3 1.5 23 159-181 9-33 (88)
10 3zyq_A Hepatocyte growth facto 48.9 6.7 0.00023 33.7 1.7 23 160-182 165-189 (226)
11 1y02_A CARP2, FYVE-ring finger 47.5 5.6 0.00019 31.2 0.9 22 160-181 20-43 (120)
12 3t7l_A Zinc finger FYVE domain 44.3 10 0.00036 27.8 1.9 24 159-182 20-45 (90)
13 2dkt_A Ring finger and CHY zin 33.3 8.6 0.00029 31.1 -0.1 30 154-183 78-108 (143)
14 2dkt_A Ring finger and CHY zin 29.1 16 0.00053 29.5 0.8 36 156-191 98-136 (143)
15 1wfl_A Zinc finger protein 216 26.8 94 0.0032 22.2 4.5 40 159-199 25-69 (74)
16 3u5e_m 60S ribosomal protein L 24.8 27 0.00091 26.9 1.4 24 159-182 93-118 (128)
17 3mpx_A FYVE, rhogef and PH dom 23.5 17 0.00058 33.5 0.0 22 160-181 376-399 (434)
18 2cr8_A MDM4 protein; ZF-ranbp 20.3 42 0.0014 22.3 1.4 20 160-179 12-31 (53)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=69.10 E-value=2.3 Score=28.99 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.0
Q ss_pred cccccccCCCCCCCCCccCccCCcccc
Q 024129 158 TEKECSTCKIPKPARSKHCSICNRCVA 184 (272)
Q Consensus 158 ~~~~C~tC~~~kP~RskHC~~C~~CV~ 184 (272)
....|..|...-|+|+.-|+.||.--+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred chhhhccccCcCCcccccccCCCCCCC
Confidence 457899999999999999999886433
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.92 E-value=3.3 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.472 Sum_probs=23.3
Q ss_pred cccccccCCCCCCCCCccCccCCcccc
Q 024129 158 TEKECSTCKIPKPARSKHCSICNRCVA 184 (272)
Q Consensus 158 ~~~~C~tC~~~kP~RskHC~~C~~CV~ 184 (272)
..+.|+.|....|.++..|+-||.--+
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCCCCceecCCCCCccc
Confidence 457899999999999999999987533
No 3
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=63.79 E-value=6.3 Score=28.54 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=18.0
Q ss_pred ccccccCCCC--CCCCCccCccCCcc
Q 024129 159 EKECSTCKIP--KPARSKHCSICNRC 182 (272)
Q Consensus 159 ~~~C~tC~~~--kP~RskHC~~C~~C 182 (272)
...|..|+.. --.|-|||+.||+-
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcE
Confidence 4678888864 34688999999873
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.89 E-value=3.9 Score=29.64 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=17.5
Q ss_pred ccccccCCCC--CCCCCccCccCCc
Q 024129 159 EKECSTCKIP--KPARSKHCSICNR 181 (272)
Q Consensus 159 ~~~C~tC~~~--kP~RskHC~~C~~ 181 (272)
...|..|+.. --.|-|||+.||+
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~ 38 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGN 38 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCC
T ss_pred CCcCcCcCCccccchhhhhhcCCCc
Confidence 3578888764 4568899999987
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=60.70 E-value=3.7 Score=28.98 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=17.2
Q ss_pred cccccCCCC--CCCCCccCccCCcc
Q 024129 160 KECSTCKIP--KPARSKHCSICNRC 182 (272)
Q Consensus 160 ~~C~tC~~~--kP~RskHC~~C~~C 182 (272)
..|..|+.. .-.|-|||+.||+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CcccCCCCccCCccccccCCCCCEE
Confidence 468888864 34588999999873
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.01 E-value=4 Score=34.78 Aligned_cols=24 Identities=25% Similarity=0.814 Sum_probs=18.1
Q ss_pred cccccCCCC--CCCCCccCccCCccc
Q 024129 160 KECSTCKIP--KPARSKHCSICNRCV 183 (272)
Q Consensus 160 ~~C~tC~~~--kP~RskHC~~C~~CV 183 (272)
..|..|+.. --.|-||||.||+-+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 689888754 346889999998743
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.13 E-value=4.8 Score=31.57 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=17.9
Q ss_pred ccccccCCCC--CCCCCccCccCCcc
Q 024129 159 EKECSTCKIP--KPARSKHCSICNRC 182 (272)
Q Consensus 159 ~~~C~tC~~~--kP~RskHC~~C~~C 182 (272)
...|..|... --.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 3578888864 34688999999873
No 8
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.23 E-value=5.2 Score=28.88 Aligned_cols=24 Identities=25% Similarity=0.707 Sum_probs=17.6
Q ss_pred ccccccCCCC--CCCCCccCccCCcc
Q 024129 159 EKECSTCKIP--KPARSKHCSICNRC 182 (272)
Q Consensus 159 ~~~C~tC~~~--kP~RskHC~~C~~C 182 (272)
...|..|+.. --.|-|||+.||+-
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 44 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHI 44 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCcccCcCCcccCccccccCCCCCCE
Confidence 3568888764 34588999999873
No 9
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=52.50 E-value=5.5 Score=29.31 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=17.4
Q ss_pred ccccccCCCC--CCCCCccCccCCc
Q 024129 159 EKECSTCKIP--KPARSKHCSICNR 181 (272)
Q Consensus 159 ~~~C~tC~~~--kP~RskHC~~C~~ 181 (272)
...|..|+.. .-.|-|||+.||+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~ 33 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGR 33 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCC
T ss_pred CCCCcCcCCcccCccccccCCCCCC
Confidence 3578888864 3468899999987
No 10
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.87 E-value=6.7 Score=33.67 Aligned_cols=23 Identities=30% Similarity=0.923 Sum_probs=17.2
Q ss_pred cccccCCCC--CCCCCccCccCCcc
Q 024129 160 KECSTCKIP--KPARSKHCSICNRC 182 (272)
Q Consensus 160 ~~C~tC~~~--kP~RskHC~~C~~C 182 (272)
..|..|... --.|-|||+.||+.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCE
Confidence 579888853 24478999999874
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.49 E-value=5.6 Score=31.16 Aligned_cols=22 Identities=27% Similarity=0.774 Sum_probs=17.2
Q ss_pred cccccCCCC--CCCCCccCccCCc
Q 024129 160 KECSTCKIP--KPARSKHCSICNR 181 (272)
Q Consensus 160 ~~C~tC~~~--kP~RskHC~~C~~ 181 (272)
..|..|+.. -..|-|||+.||+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred CcccCcCCccccccccccCCCCCC
Confidence 578888763 3568899999988
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.34 E-value=10 Score=27.77 Aligned_cols=24 Identities=25% Similarity=0.819 Sum_probs=17.3
Q ss_pred ccccccCCCC--CCCCCccCccCCcc
Q 024129 159 EKECSTCKIP--KPARSKHCSICNRC 182 (272)
Q Consensus 159 ~~~C~tC~~~--kP~RskHC~~C~~C 182 (272)
...|..|... --.|-|||+.||+-
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCE
Confidence 3578888753 34578999999873
No 13
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=33.28 E-value=8.6 Score=31.08 Aligned_cols=30 Identities=27% Similarity=0.727 Sum_probs=16.0
Q ss_pred CccccccccccCCCCCCCC-CccCccCCccc
Q 024129 154 NIIYTEKECSTCKIPKPAR-SKHCSICNRCV 183 (272)
Q Consensus 154 ~~~~~~~~C~tC~~~kP~R-skHC~~C~~CV 183 (272)
+..+...+|..|+...+++ ..||..||-|-
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR 108 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICR 108 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCcee
Confidence 4445567788888764432 23444444443
No 14
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=29.15 E-value=16 Score=29.54 Aligned_cols=36 Identities=31% Similarity=0.694 Sum_probs=24.6
Q ss_pred cccccccccCCCCCCCCCccCccCCccccC--CC-Cccc
Q 024129 156 IYTEKECSTCKIPKPARSKHCSICNRCVAR--FD-HHCG 191 (272)
Q Consensus 156 ~~~~~~C~tC~~~kP~RskHC~~C~~CV~r--~D-HHC~ 191 (272)
+|.=..|-.|++-+...-.||..||.|+.. .| |.|.
T Consensus 98 ~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 98 QYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp EEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred eecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 344456666666666778899999999653 44 7774
No 15
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.85 E-value=94 Score=22.15 Aligned_cols=40 Identities=18% Similarity=0.478 Sum_probs=24.6
Q ss_pred ccccccCCCCCCCCCccCccCCc--ccc---CCCCccccccccccc
Q 024129 159 EKECSTCKIPKPARSKHCSICNR--CVA---RFDHHCGWMNNCIGE 199 (272)
Q Consensus 159 ~~~C~tC~~~kP~RskHC~~C~~--CV~---r~DHHC~WinnCIG~ 199 (272)
.+.|.+|+...-.-...|+ |+. |-. --||.|++-..=.|+
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEAS 69 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTSS
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhch
Confidence 4689999875322246677 754 322 238999887655554
No 16
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=24.81 E-value=27 Score=26.87 Aligned_cols=24 Identities=25% Similarity=0.731 Sum_probs=20.9
Q ss_pred ccccccCCCCCCCCCccCcc--CCcc
Q 024129 159 EKECSTCKIPKPARSKHCSI--CNRC 182 (272)
Q Consensus 159 ~~~C~tC~~~kP~RskHC~~--C~~C 182 (272)
...|..|..+-|+|++.|+. ||+.
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 47899999999999999994 8763
No 17
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=23.49 E-value=17 Score=33.46 Aligned_cols=22 Identities=27% Similarity=0.739 Sum_probs=0.0
Q ss_pred cccccCCCC--CCCCCccCccCCc
Q 024129 160 KECSTCKIP--KPARSKHCSICNR 181 (272)
Q Consensus 160 ~~C~tC~~~--kP~RskHC~~C~~ 181 (272)
..|..|... --.|-|||+.||+
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~ 399 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGK 399 (434)
T ss_dssp ------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcC
Confidence 568888763 2347899999987
No 18
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.29 E-value=42 Score=22.35 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=12.1
Q ss_pred cccccCCCCCCCCCccCccC
Q 024129 160 KECSTCKIPKPARSKHCSIC 179 (272)
Q Consensus 160 ~~C~tC~~~kP~RskHC~~C 179 (272)
-.|..|+..-||--.||..|
T Consensus 12 WkC~~C~k~N~Pl~ryC~rC 31 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRC 31 (53)
T ss_dssp EECSSSCCEECSSCCBCTTT
T ss_pred eecccccccCCCccchhHHH
Confidence 34666666666666666555
Done!