BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024130
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZU1|A Chain A, Solution Structure Of The N-Terminal Zinc Fingers Of The
          Xenopus Laevis Double Stranded Rna Binding Protein Zfa
          Length = 127

 Score = 35.0 bits (79), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 23 INSPLVRYNE--FDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNT 76
          +NS L+R N   F    C+VC  VL S+SQ  AH  SRKH   ++   A   G ++
Sbjct: 19 VNS-LIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDS 73


>pdb|1TY9|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
           Fluorescens
 pdb|1TY9|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
           Fluorescens
          Length = 222

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 15/77 (19%)

Query: 149 SGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKS-------------KQNA 195
           SGV    +  + ++L  +   LPN  A  A   +P+  HP  S              +NA
Sbjct: 106 SGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNA 165

Query: 196 GSEAKQIKGAL--PEGF 210
             +  +++G L  PEG+
Sbjct: 166 ARQLAELQGPLPRPEGY 182


>pdb|1S2G|A Chain A, Purine 2'deoxyribosyltransferase + 2'-Deoxyadenosine
 pdb|1S2G|B Chain B, Purine 2'deoxyribosyltransferase + 2'-Deoxyadenosine
 pdb|1S2G|C Chain C, Purine 2'deoxyribosyltransferase + 2'-Deoxyadenosine
 pdb|1S2I|A Chain A, Purine 2'deoxyribosyltransferase + Bromopurine
 pdb|1S2I|B Chain B, Purine 2'deoxyribosyltransferase + Bromopurine
 pdb|1S2I|C Chain C, Purine 2'deoxyribosyltransferase + Bromopurine
 pdb|1S2L|A Chain A, Purine 2'deoxyribosyltransferase Native Structure
 pdb|1S2L|B Chain B, Purine 2'deoxyribosyltransferase Native Structure
 pdb|1S2L|C Chain C, Purine 2'deoxyribosyltransferase Native Structure
 pdb|1S3F|A Chain A, Purine 2'-Deoxyribosyltransferase + Selenoinosine
 pdb|1S3F|B Chain B, Purine 2'-Deoxyribosyltransferase + Selenoinosine
 pdb|1S3F|C Chain C, Purine 2'-Deoxyribosyltransferase + Selenoinosine
          Length = 167

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 125 FDNQEVKRPKTDSVK-LVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQ- 182
           F + + K P+   ++ +V  D+T  + ++  + A   V L  +MD+L +G+A      + 
Sbjct: 49  FTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLY-DMDQLDDGSAFEIGFMRA 107

Query: 183 --------PFKEHPEKSKQ 193
                   PF EHPEK K+
Sbjct: 108 MHKPVILVPFTEHPEKEKK 126


>pdb|1S2D|A Chain A, Purine 2'-deoxyribosyl Complex With Arabinoside:
           Ribosylated Intermediate (araa)
 pdb|1S2D|B Chain B, Purine 2'-deoxyribosyl Complex With Arabinoside:
           Ribosylated Intermediate (araa)
 pdb|1S2D|C Chain C, Purine 2'-deoxyribosyl Complex With Arabinoside:
           Ribosylated Intermediate (araa)
          Length = 167

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 125 FDNQEVKRPKTDSVK-LVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQ- 182
           F + + K P+   ++ +V  D+T  + ++  + A   V L  +MD+L +G+A      + 
Sbjct: 49  FTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLY-DMDQLDDGSAFXIGFMRA 107

Query: 183 --------PFKEHPEKSKQ 193
                   PF EHPEK K+
Sbjct: 108 MHKPVILVPFTEHPEKEKK 126


>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
 pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
 pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
          Length = 675

 Score = 27.3 bits (59), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 171 PNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFD 212
           P G A+ A+    F E+ +K   +A +    I G LP G+ D
Sbjct: 313 PEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVD 354


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.125    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,687,710
Number of Sequences: 62578
Number of extensions: 313052
Number of successful extensions: 675
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 10
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.3 bits)