Query 024130
Match_columns 272
No_of_seqs 123 out of 131
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 18:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu1_A DSRBP-ZFA, RNA binding 96.9 0.00059 2E-08 55.2 3.4 37 32-68 90-126 (127)
2 1zr9_A Zinc finger protein 593 95.4 0.0075 2.6E-07 49.7 2.7 38 32-69 47-84 (124)
3 1zu1_A DSRBP-ZFA, RNA binding 95.4 0.0082 2.8E-07 48.5 2.9 35 35-69 32-66 (127)
4 3eph_A TRNA isopentenyltransfe 94.9 0.013 4.4E-07 56.5 3.3 37 34-70 359-401 (409)
5 3cw1_L U1 small nuclear ribonu 87.9 0.27 9.2E-06 37.5 2.4 31 36-66 4-36 (77)
6 4dgw_A PRE-mRNA-splicing facto 80.3 0.65 2.2E-05 44.7 2.0 39 31-69 288-326 (402)
7 2yrk_A Zinc finger homeobox pr 77.4 1.7 5.9E-05 31.3 2.9 33 35-67 13-45 (55)
8 4f9c_B Protein DBF4 homolog A; 31.6 19 0.00065 29.8 1.7 28 34-64 86-113 (144)
9 3gs2_B Chromobox protein homol 26.6 22 0.00076 22.5 1.0 10 204-213 19-28 (30)
10 2djr_A Zinc finger BED domain- 25.5 42 0.0014 25.1 2.5 31 34-66 27-65 (76)
11 2cs3_A Protein C14ORF4, MY039 20.4 42 0.0015 26.1 1.7 19 28-46 8-26 (93)
No 1
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=96.87 E-value=0.00059 Score=55.22 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=34.1
Q ss_pred CCCCceeecccccccCcchhHHhhCChhHHHHHHHhh
Q 024130 32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (272)
Q Consensus 32 ~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk 68 (272)
..+.+.|.+|++.+.++..+..|++||.|+.++.+++
T Consensus 90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~ 126 (127)
T 1zu1_A 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126 (127)
T ss_dssp CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence 5678899999999999999999999999999998763
No 2
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=95.40 E-value=0.0075 Score=49.69 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=35.5
Q ss_pred CCCCceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130 32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (272)
Q Consensus 32 ~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~ 69 (272)
..|...|..|+....+++.+..|.+||.|+.++..|+.
T Consensus 47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~ 84 (124)
T 1zr9_A 47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84 (124)
T ss_dssp GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence 56899999999999999999999999999999999874
No 3
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=95.40 E-value=0.0082 Score=48.46 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=32.4
Q ss_pred CceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (272)
Q Consensus 35 qL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~ 69 (272)
.+.|.+|++.+.+++.-..|..|+.|+.+|..+..
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~ 66 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA 66 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence 48999999999999999999999999999987655
No 4
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.94 E-value=0.013 Score=56.45 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=32.0
Q ss_pred CCceeecccc------cccCcchhHHhhCChhHHHHHHHhhhh
Q 024130 34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG 70 (272)
Q Consensus 34 GqL~C~lC~~------~VKsEslW~aH~~Sk~Hr~~v~~lk~~ 70 (272)
-+-+|-+|+. .+-.|.-|..|+.|+.||.++.+.++.
T Consensus 359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~ 401 (409)
T 3eph_A 359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ 401 (409)
T ss_dssp CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3458999997 688889999999999999999887654
No 5
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=87.87 E-value=0.27 Score=37.52 Aligned_cols=31 Identities=39% Similarity=0.651 Sum_probs=26.5
Q ss_pred ceeecccccccCc--chhHHhhCChhHHHHHHH
Q 024130 36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKN 66 (272)
Q Consensus 36 L~C~lC~~~VKsE--slW~aH~~Sk~Hr~~v~~ 66 (272)
--|--|++-|... +.|..|++|++|+.|+..
T Consensus 4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~ 36 (77)
T 3cw1_L 4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD 36 (77)
T ss_pred cccccCCceecCCCHHHHHHHHccHHHHHHHHH
Confidence 4699999999544 568999999999999987
No 6
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=80.33 E-value=0.65 Score=44.70 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=34.4
Q ss_pred CCCCCceeecccccccCcchhHHhhCChhHHHHHHHhhh
Q 024130 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (272)
Q Consensus 31 n~~GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~lk~ 69 (272)
+..+.+-|..|....+++.+...|+.||+|..++++.|.
T Consensus 288 ~~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k~ 326 (402)
T 4dgw_A 288 SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRN 326 (402)
T ss_dssp ETTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSHH
T ss_pred CCCcCeeehhhhhhhccccccHHHhcccccchhHHHHHH
Confidence 357789999999999999999999999999998876544
No 7
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=77.36 E-value=1.7 Score=31.31 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=27.7
Q ss_pred CceeecccccccCcchhHHhhCChhHHHHHHHh
Q 024130 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI 67 (272)
Q Consensus 35 qL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v~~l 67 (272)
.+-|.+|++---+-.--.-||.|++|-.+|..+
T Consensus 13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~ 45 (55)
T 2yrk_A 13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRET 45 (55)
T ss_dssp CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred CccccccCcccccccchhhhhccHHHHHHHHHH
Confidence 479999998876656678999999999998764
No 8
>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*
Probab=31.64 E-value=19 Score=29.75 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCceeecccccccCcchhHHhhCChhHHHHH
Q 024130 34 DQPVCRVCDVVLKSDSQWDAHQASRKHHEAI 64 (272)
Q Consensus 34 GqL~C~lC~~~VKsEslW~aH~~Sk~Hr~~v 64 (272)
..-.|-+|.+...+ -..|+.|.+|+.-+
T Consensus 86 k~GyCE~C~~~y~~---l~~H~~s~~Hr~fa 113 (144)
T 4f9c_B 86 KKGYCECCLQKYED---LETHLLSEQHRNFA 113 (144)
T ss_dssp --CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred CCCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence 34589999988885 67999999999765
No 9
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=26.59 E-value=22 Score=22.51 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=8.1
Q ss_pred cCCCCCCCCC
Q 024130 204 GALPEGFFDN 213 (272)
Q Consensus 204 ~~LPeGFFDD 213 (272)
...|+|||.+
T Consensus 19 ~~~p~gff~~ 28 (30)
T 3gs2_B 19 AQAAEGFFRD 28 (30)
T ss_dssp ESCSTTTSCC
T ss_pred cCCCcccccc
Confidence 4679999976
No 10
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.52 E-value=42 Score=25.08 Aligned_cols=31 Identities=23% Similarity=0.652 Sum_probs=21.9
Q ss_pred CCceeeccccccc--------CcchhHHhhCChhHHHHHHH
Q 024130 34 DQPVCRVCDVVLK--------SDSQWDAHQASRKHHEAIKN 66 (272)
Q Consensus 34 GqL~C~lC~~~VK--------sEslW~aH~~Sk~Hr~~v~~ 66 (272)
..-.|.+|+..|. +=.||. ||. ..|...+++
T Consensus 27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~r-HL~-~~H~~e~~~ 65 (76)
T 2djr_A 27 QYATCRLCGRQVSRGPGVNVGTTALWK-HLK-SMHREELEK 65 (76)
T ss_dssp SCEEESSSCCBCCCCSSCCSSSCHHHH-HHH-HTTHHHHHH
T ss_pred CEEECCCCCCccCCCCCCCCchHHHHH-HHH-HHCHHHHHh
Confidence 3689999999997 223443 664 678887765
No 11
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=20.37 E-value=42 Score=26.15 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=14.9
Q ss_pred cccCCCCCceeeccccccc
Q 024130 28 VRYNEFDQPVCRVCDVVLK 46 (272)
Q Consensus 28 A~Yn~~GqL~C~lC~~~VK 46 (272)
...+....|.|+||+..+-
T Consensus 8 ~~~~~~a~l~CtlC~erLE 26 (93)
T 2cs3_A 8 SPMANSGPLCCTICHERLE 26 (93)
T ss_dssp CSSCSCCSCCCSSSCSCCS
T ss_pred CCCCCCCeeEeecchhhhc
Confidence 3445788999999998765
Done!