BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024132
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/253 (70%), Positives = 210/253 (83%), Gaps = 2/253 (0%)
Query: 1 MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCXXXXXXXXXKRYSITLLPGDGIGPEVI 60
MAA++Q N + + + +K L P R+RC KRY+ITLLPGDGIGPEV+
Sbjct: 1 MAAALQTNIRTVKVPATFRAVSKQSLAPFRVRCAVASPGK--KRYTITLLPGDGIGPEVV 58
Query: 61 AVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120
++AKNVL+ AGSLEG+EF F+EMP+GG+ALDLVGVPLPEET++AAK+SDAVLLGAIGGYK
Sbjct: 59 SIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYK 118
Query: 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTG 180
WD NEKHL+PE GLLQIR LKVFANLRPATVLPQLVD+STLK+EVAEGVDLMVVRELTG
Sbjct: 119 WDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTG 178
Query: 181 GIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEV 240
GIYFG+PRG E+GEE+GFNTEVYAA+E+DRIARVAFETARKR GKLCSVDKANVLE
Sbjct: 179 GIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA 238
Query: 241 MVYMLKQFSLVAH 253
+ K+ + +A
Sbjct: 239 SILWRKRVTALAS 251
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/193 (56%), Positives = 133/193 (68%), Gaps = 2/193 (1%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
I +LPGDGIGPEV+ A VLK G EF F+ +GG+A+D G PLPEETL +
Sbjct: 26 IAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCR 85
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
SDA+LLGA+GG KWD+N L+PE GLL IR+GL +FANLRP V L D+S LKKEV
Sbjct: 86 GSDAILLGAVGGPKWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEV 145
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
EGVDL++VRELTGG+YFG+P E GEE +T +Y E++RI R AFE A R
Sbjct: 146 IEGVDLVIVRELTGGLYFGEPSER--YEEGEEAAVDTLLYTREEIERIIRKAFELALTRK 203
Query: 227 GKLCSVDKANVLE 239
K+ SVDKANVLE
Sbjct: 204 KKVTSVDKANVLE 216
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 207 bits (528), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 135/200 (67%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD+N + L+PE GLL IR+ L +FANLRP V L D+S LKKE
Sbjct: 63 EAEAVLLGSVGGPKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPLKKEY 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
+ VD ++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 IDNVDFVIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 6 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 65
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 66 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 125
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 126 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKRR 180
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 181 KHVVSVDKANVLEVGEFWRK 200
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 204 bits (519), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEVARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 204 bits (518), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFELARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFELARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEGARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 135/200 (67%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + + PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFELARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 203 bits (517), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEFARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 203 bits (517), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + ++PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFELARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 203 bits (517), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 135/200 (67%), Gaps = 5/200 (2%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KWD + + PETGLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKRR 177
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 178 KHVVSVDKANVLEVGEFWRK 197
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 133/200 (66%), Gaps = 7/200 (3%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ +LPGDGIGPEV A VL+ EG+ A++ P GG+A+D G P PE T +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+++AVLLG++GG KW ++PE GLL +R+ +FANLRPA V P L S LK+E+
Sbjct: 63 EAEAVLLGSVGGPKWGTG--SVRPEQGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 120
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
A GVD+++VRELTGGIYFG+PRG E +NTE Y+ EV+R+ARVAFE ARKR
Sbjct: 121 ARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKRR 175
Query: 227 GKLCSVDKANVLEVMVYMLK 246
+ SVDKANVLEV + K
Sbjct: 176 KHVVSVDKANVLEVGEFWRK 195
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/194 (50%), Positives = 129/194 (66%), Gaps = 1/194 (0%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
I + GDGIGPE++A A+ VL + E +GG+ALD PLP +L A
Sbjct: 4 IAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAM 63
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
+DAV+LGA+GG +WD +PE GLL++R+GL ++ANLRPA + PQL+D+S L+ E+
Sbjct: 64 AADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPEL 123
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
VD++VVRELTG IYFG+PRG V + G+ GFNT VY E+ RIA VAF A+ R
Sbjct: 124 VRDVDILVVRELTGDIYFGQPRGLEVID-GKRRGFNTMVYDEDEIRRIAHVAFRAAQGRR 182
Query: 227 GKLCSVDKANVLEV 240
+LCSVDKANVLE
Sbjct: 183 KQLCSVDKANVLET 196
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 140/216 (64%), Gaps = 15/216 (6%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
I +LPGDGIGPE++ A VL +F + P+GG+ + G PLP+ TLA AK
Sbjct: 11 IAVLPGDGIGPEIVNEAVKVLNALDE----KFELEHAPVGGAGYEASGHPLPDATLALAK 66
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
++DA+L GA+G +K+D E+ L+PE +L +R+ L++FAN RPA PQLVD+S LK E+
Sbjct: 67 EADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPEL 126
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETA 222
G+D+++VREL G IYFG+PRG GE GF+T Y+ EV RIA VAF+ A
Sbjct: 127 VAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGEREGFDTMRYSEPEVRRIAHVAFQAA 186
Query: 223 RKRHGKLCSVDKANVLE-------VMVYMLKQFSLV 251
+KR KL SVDK+NVLE VM+ + K+++ V
Sbjct: 187 QKRAKKLLSVDKSNVLETSQFWRDVMIDVSKEYADV 222
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 130/199 (65%), Gaps = 8/199 (4%)
Query: 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLA 103
+ + +LPGDGIGPEV+ A VLK +G E F+ +GG+A+D G PLPEETL
Sbjct: 2 KMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLD 61
Query: 104 AAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLK 163
++SDA+LLGA+GG KWD N L+PE GLL +R+ + +FANLRP L+++S LK
Sbjct: 62 ICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK 121
Query: 164 KEVAEGVDLMVVRELTGGIYFGKP---RGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFE 220
+E E VDL++VRELTGG+YFG+P RG G E +T Y E++RI AF+
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEV-----VDTLAYTREEIERIIEKAFQ 176
Query: 221 TARKRHGKLCSVDKANVLE 239
A+ R KL SVDKANVLE
Sbjct: 177 LAQIRRKKLASVDKANVLE 195
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 130/199 (65%), Gaps = 8/199 (4%)
Query: 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLA 103
+ + +LPGDGIGPEV+ A VLK +G E F+ +GG+A+D G PLPEETL
Sbjct: 2 KMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLD 61
Query: 104 AAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLK 163
++SDA+LLGA+GG KWD N L+PE GLL +R+ + +FANLRP L+++S LK
Sbjct: 62 ICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK 121
Query: 164 KEVAEGVDLMVVRELTGGIYFGKP---RGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFE 220
+E E VDL++VRELTGG+YFG+P RG G E +T Y E++RI AF+
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEV-----VDTLAYTREEIERIIEKAFQ 176
Query: 221 TARKRHGKLCSVDKANVLE 239
A+ R KL SVDKANVLE
Sbjct: 177 LAQIRRKKLASVDKANVLE 195
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 184 bits (466), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 130/199 (65%), Gaps = 8/199 (4%)
Query: 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLA 103
+ + +LPGDGIGPEV+ A VLK +G E F+ +GG+A+D G PLPEETL
Sbjct: 2 KMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLD 61
Query: 104 AAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLK 163
++SDA+LLGA+GG KWD N L+PE GLL +R+ + +FANLRP L+++S LK
Sbjct: 62 ICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK 121
Query: 164 KEVAEGVDLMVVRELTGGIYFGKP---RGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFE 220
+E E VDL++VRELTGG+YFG+P RG G E +T Y E++RI AF+
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEV-----VDTLAYTREEIERIIEKAFQ 176
Query: 221 TARKRHGKLCSVDKANVLE 239
A+ R KL SVDKANVLE
Sbjct: 177 LAQIRRKKLASVDKANVLE 195
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 127/200 (63%), Gaps = 3/200 (1%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAA 104
Y I +L GDGIGPEV+A A+ VLK + G+ + E +GG A+D G PLPE TL
Sbjct: 14 YQIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKG 73
Query: 105 AKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLK 163
+ +DA+L G++GG KW+K + +PE G LL +R ++F NLRPA + L S L+
Sbjct: 74 CEAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLR 133
Query: 164 KEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETA 222
++ A G D++ VRELTGGIYFGKP+G EE F+T Y+ E+ RIAR+AFE A
Sbjct: 134 SDISARGFDVLCVRELTGGIYFGKPKGRQGEGESEE-AFDTMRYSRREISRIARIAFEAA 192
Query: 223 RKRHGKLCSVDKANVLEVMV 242
R R K+ SVDKANVL V
Sbjct: 193 RGRRKKVTSVDKANVLACSV 212
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 131/202 (64%), Gaps = 3/202 (1%)
Query: 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETL 102
K Y I +LPGDGIGPEV+A A V+ S + +GG A+D G PLP+ T+
Sbjct: 3 KNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATV 62
Query: 103 AAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSST 161
+Q+DA+L G++GG KW+ +PE G LL +R+ K+F+NLRPA + L
Sbjct: 63 EGCEQADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCP 122
Query: 162 LKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFE 220
L+ ++ A G D++ VRELTGGIYFG+P+G + E+ F+TEVY +E++RIAR+AFE
Sbjct: 123 LRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFE 181
Query: 221 TARKRHGKLCSVDKANVLEVMV 242
+ARKR K+ S+DKANVL+ +
Sbjct: 182 SARKRRRKVTSIDKANVLQSSI 203
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 130/202 (64%), Gaps = 3/202 (1%)
Query: 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETL 102
K Y I +LPGDGIGPEV+ A VL + + +GG+A+D G PLP T+
Sbjct: 3 KNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATV 62
Query: 103 AAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSST 161
+Q+DAVL G++GG KW+ +PE G LL +R+ K+F+NLRPA + L
Sbjct: 63 EGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCP 122
Query: 162 LKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFE 220
L+ ++ A G D++ VRELTGGIYFG+P+G + E+ F+TEVY +E++RIAR+AFE
Sbjct: 123 LRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFE 181
Query: 221 TARKRHGKLCSVDKANVLEVMV 242
+ARKR K+ S+DKANVL+ +
Sbjct: 182 SARKRRHKVTSIDKANVLQSSI 203
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 129/200 (64%), Gaps = 3/200 (1%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAA 104
Y I +L GDGIGPEV+A A+ VLK + G+ + E +GG A+D G PLPE TL
Sbjct: 14 YQIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKG 73
Query: 105 AKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLK 163
+ +DAVL G++GG KW+ + +PE G LL +R ++F N+RPA + P L S L+
Sbjct: 74 CEAADAVLFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLR 133
Query: 164 KEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETA 222
+++E G D++ VRELTGGIYFGKP+G EE F+T Y+ E+ RIA++AFE+A
Sbjct: 134 SDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEE-AFDTMRYSRKEIRRIAKIAFESA 192
Query: 223 RKRHGKLCSVDKANVLEVMV 242
+ R K+ SVDKANVL V
Sbjct: 193 QGRRKKVTSVDKANVLACSV 212
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 127/200 (63%), Gaps = 3/200 (1%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAA 104
Y I +L GDGIGPEV+A A+ VL + + E +GG+A+D G PLPE TL
Sbjct: 14 YQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKG 73
Query: 105 AKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLK 163
+ +DAVL G++GG KW+ + +PE G LL +R ++F N+RPA + P L S L+
Sbjct: 74 CEAADAVLFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLR 133
Query: 164 KEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETA 222
+++E G D++ VRELTGGIYFGKP+G EE F+T Y+ E+ RIA++AFE+A
Sbjct: 134 SDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEE-AFDTMRYSRKEIRRIAKIAFESA 192
Query: 223 RKRHGKLCSVDKANVLEVMV 242
+ R K+ SVDKANVL V
Sbjct: 193 QGRRKKVTSVDKANVLACSV 212
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 122/198 (61%), Gaps = 8/198 (4%)
Query: 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETL 102
K Y + +L GDGIGP V+ A +L F E +GG+++D GV L +ETL
Sbjct: 5 KTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETL 64
Query: 103 AAAKQSDAVLLGAIGGYKWDKNEKHLKPE-TGLLQIREGLKVFANLRPATVLPQLVDSST 161
+QSDA+L G++GG KWD +PE LL +R+ +FANLRP + L +S
Sbjct: 65 KLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASP 124
Query: 162 LKKEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFE 220
LK E+ + GVD++ VRELTGGIYFGK + G+E ++TE+Y E++RIAR+AFE
Sbjct: 125 LKNEIIQKGVDILCVRELTGGIYFGK------QDLGKESAYDTEIYTKKEIERIARIAFE 178
Query: 221 TARKRHGKLCSVDKANVL 238
+AR R K+ +DKANVL
Sbjct: 179 SARIRKKKVHLIDKANVL 196
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 121/198 (61%), Gaps = 8/198 (4%)
Query: 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETL 102
K Y + +L GDGIGP V A +L F E +GG+++D GV L +ETL
Sbjct: 5 KTYKVAVLAGDGIGPLVXKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETL 64
Query: 103 AAAKQSDAVLLGAIGGYKWDKNEKHLKPE-TGLLQIREGLKVFANLRPATVLPQLVDSST 161
+QSDA+L G++GG KWD +PE LL +R+ +FANLRP + L +S
Sbjct: 65 KLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASP 124
Query: 162 LKKEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFE 220
LK E+ + GVD++ VRELTGGIYFGK + G+E ++TE+Y E++RIAR+AFE
Sbjct: 125 LKNEIIQKGVDILCVRELTGGIYFGK------QDLGKESAYDTEIYTKKEIERIARIAFE 178
Query: 221 TARKRHGKLCSVDKANVL 238
+AR R K+ +DKANVL
Sbjct: 179 SARIRKKKVHLIDKANVL 196
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 122/194 (62%), Gaps = 7/194 (3%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
I +LPGDGIGPEV+ A VL++ G F +GG A+D G PLPEET
Sbjct: 15 IAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICL 74
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPET-GLLQIREGLKVFANLRPATVLPQLVDSSTLKKE 165
++DA+ LG++GG KWD +PE GLL +R+ L ++AN+RP V LV S LK++
Sbjct: 75 EADAIFLGSVGGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEK 134
Query: 166 V-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARK 224
V GVDL+ VREL+ G+Y+G+PRG EE GF+T +Y V+RIAR AFE A+
Sbjct: 135 VIGSGVDLVTVRELSYGVYYGQPRGL-----DEEKGFDTMIYDRKTVERIARTAFEIAKN 189
Query: 225 RHGKLCSVDKANVL 238
R K+ SVDKANVL
Sbjct: 190 RRKKVTSVDKANVL 203
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 22/196 (11%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAA 104
+++ L+ GDGIGPE+++ +K +L L + + E+ G AL G LP+++L
Sbjct: 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKI 61
Query: 105 AKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKK 164
++D +L G +G D ++++R+ ++AN+RPA +P +D+
Sbjct: 62 IDKADIILKGPVGESAADV----------VVKLRQIYDMYANIRPAKSIPG-IDTKY--- 107
Query: 165 EVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARK 224
VD+++VRE T +Y G + G +G ++ + +RIA+V A +
Sbjct: 108 ---GNVDILIVRENTEDLYKGFEH---IVSDGVAVGM--KIITRFASERIAKVGLNFALR 159
Query: 225 RHGKLCSVDKANVLEV 240
R K+ V KANV+ +
Sbjct: 160 RRKKVTCVHKANVMRI 175
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 16/235 (6%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLV-GVPLPEETLA 103
+ I +PGDGIG EV+ VL+ A G+ F L G +P++
Sbjct: 6 FRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAE 65
Query: 104 AAKQSDAVLLGAIGGYKW-DKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTL 162
KQ DA+ GA+G W DK H+ LL+ R + N+RP + P V +
Sbjct: 66 QLKQYDAIYFGAVG---WPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPG-VPCALA 121
Query: 163 KKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGE-EIGFNTEVYAAYEVDRIARVAFET 221
++V + +D +VVRE T G Y G + E+ E EI ++ VDRI + AF+
Sbjct: 122 NRKVGD-IDFVVVRENTEGEY--SSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDL 178
Query: 222 ARKRHGK-LCSVDKANVLEV-MVYMLKQFSLVA----HVSFTLNVHVLDCEKVIL 270
A KR K + S K+N + + M Y K+ +A HVS+ + C + +L
Sbjct: 179 AEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVL 233
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 101/234 (43%), Gaps = 14/234 (5%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLV-GVPLPEETLA 103
+ I +PGDGIG EV+ VL+ A G+ F L G P++
Sbjct: 6 FRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKXXPDDWAE 65
Query: 104 AAKQSDAVLLGAIGGYKW-DKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTL 162
KQ DA+ GA+G W DK H+ LL+ R + N+RP + P V +
Sbjct: 66 QLKQYDAIYFGAVG---WPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPG-VPCALA 121
Query: 163 KKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETA 222
++V + +D +VVRE T G Y G EI ++ VDRI + AF+ A
Sbjct: 122 NRKVGD-IDFVVVRENTEGEY-SSLGGIXFENTENEIVIQESIFTRRGVDRILKYAFDLA 179
Query: 223 RKRHGK-LCSVDKANVLEVMV-YMLKQFSLVA----HVSFTLNVHVLDCEKVIL 270
KR K + S K+N + Y K+ A HVS+ + C + +L
Sbjct: 180 EKRERKHVTSATKSNGXAISXPYWDKRTEAXAAHYPHVSWDKQHIDILCARFVL 233
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAA 104
Y I L+ GDGIG EVI A+ VL+ G+ F E G + G +PEET+
Sbjct: 3 YRICLIEGDGIGYEVIPAARRVLEAT----GLPLEFVEAEAGWETFERRGTSVPEETVVK 58
Query: 105 AKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKK 164
A L GA K ++ +R L ++AN+RPA P V S
Sbjct: 59 ILSCHATLFGA----ATIPTRKVPGFFGAIMALRRRLDLYANVRPAKSRP--VPGSR--- 109
Query: 165 EVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARK 224
GVDL++VRE T G+Y + R Y ++ V + +RI R A A
Sbjct: 110 ---PGVDLVIVRENTEGLYVEQERRY------LDVAIADAVISKKASERIGRAALRIAEG 160
Query: 225 RHGKLCSV-DKANVL 238
R K + KANVL
Sbjct: 161 RPRKTLHIAHKANVL 175
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
+ ++ GDGIGPEV A A VL + G++ ++ G G LP+ +A +
Sbjct: 4 LAIIAGDGIGPEVTAEAVKVLDAV--VPGVQKTSYDL--GARRFHATGEVLPDSVVAELR 59
Query: 107 QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV 166
DA+LLGAIG + LL++R L NLRPA + P + +S L
Sbjct: 60 NHDAILLGAIGDPSVPSG---VLERGLLLRLRFELDHHINLRPARLYPGV--ASPLSGN- 113
Query: 167 AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRH 226
G+D +VVRE T G Y G V E+ V A+ V R+ AFE AR+R
Sbjct: 114 -PGIDFVVVREGTEGPYTGNGGAIRVGTP-NEVATEVSVNTAFGVRRVVADAFERARRRR 171
Query: 227 GKLCSVDKANVL 238
L V K NVL
Sbjct: 172 KHLTLVHKTNVL 183
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAA 104
Y I L+ GDGIG EVI A+ VL+ G+ F E G + G +PEET+
Sbjct: 3 YRICLIEGDGIGHEVIPAARRVLEAT----GLPLEFVEAEAGWETFERRGTSVPEETVEK 58
Query: 105 AKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKK 164
A L GA K + +R L ++AN+RPA P V S
Sbjct: 59 ILSCHATLFGA----ATSPTRKVPGFFGAIRYLRRRLDLYANVRPAKSRP--VPGSR--- 109
Query: 165 EVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARK 224
GVDL++VRE T G+Y + R Y ++ V + +RI R A A
Sbjct: 110 ---PGVDLVIVRENTEGLYVEQERRY------LDVAIADAVISKKASERIGRAALRIAEG 160
Query: 225 RHGKLCSV-DKANVL 238
R K + KANVL
Sbjct: 161 RPRKTLHIAHKANVL 175
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAA 104
Y I L+ GDGIG EVI A+ VL+ G+ F E G + G +PEET+
Sbjct: 2 YRICLIEGDGIGHEVIPAARRVLEAT----GLPLEFVEAEAGWETFERRGTSVPEETVEK 57
Query: 105 AKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKK 164
A L GA K + +R L ++AN+RPA P V S
Sbjct: 58 ILSCHATLFGA----ATSPTRKVPGFFGAIRYLRRRLDLYANVRPAKSRP--VPGSR--- 108
Query: 165 EVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARK 224
GVDL++VRE T G+Y + R Y ++ V + +RI R A A
Sbjct: 109 ---PGVDLVIVRENTEGLYVEQERRY------LDVAIADAVISKKASERIGRAALRIAEG 159
Query: 225 RHGKLCSV-DKANVL 238
R K + KANVL
Sbjct: 160 RPRKTLHIAHKANVL 174
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETL 102
+R + L+P DGIG EV+ A+ +++ + ++F F ++ G + G LPE T+
Sbjct: 9 RRIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTV 68
Query: 103 AAAK-QSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSST 161
K + +A L GA+ K + ++ +R+ + ++AN+RP +
Sbjct: 69 ERLKTECNAALFGAV----QSPTHKVAGYSSPIVALRKKMGLYANVRPV---------KS 115
Query: 162 LKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFET 221
L + VDL++VRE T +Y + R T G+ + + +I ++AFE
Sbjct: 116 LDGAKGKPVDLVIVRENTECLYVKEERMVQNTP-GKRVAEAIRRISEEASTKIGKMAFEI 174
Query: 222 ARKRH 226
A+ R
Sbjct: 175 AKSRQ 179
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 38/215 (17%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAK 106
I GDGIG +V+ A VL A G E + ++ G A L G LP++TL A K
Sbjct: 30 IPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIK 89
Query: 107 QSDAVLLGAI-----GGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSST 161
+ L G + GGY+ + + IR+ L ++AN+RP L + S
Sbjct: 90 EFRVALKGPLTTPVGGGYR-----------SLNVTIRQVLDLYANVRPVYYLKGV--PSP 136
Query: 162 LKKEVAEGVDLMVVRELTGGIYFG--KPRG--------------YGVTEHGEEIGFNTEV 205
+K E V+ ++ RE T +Y G PRG +GVT E+ G +
Sbjct: 137 IKH--PEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIR-EDSGIGIKP 193
Query: 206 YAAYEVDRIARVAFETARKRHGKLCS-VDKANVLE 239
+ + R+ R+A A + + K + V K N+++
Sbjct: 194 ISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMK 228
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 33/218 (15%)
Query: 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDL-VGVPLPEETL 102
R IT++PGDGIGPE + VL+ A + A++ G S + +P+ET+
Sbjct: 19 RKLITVIPGDGIGPECVEATLKVLEAAKA----PLAYEVREAGASVFRRGIASGVPQETI 74
Query: 103 AAAKQSDAVLLGAIG---GYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDS 159
+ +++ VL G + GY EK + + +R+ + +AN+RP P +
Sbjct: 75 ESIRKTRVVLKGPLETPVGY----GEK-----SANVTLRKLFETYANVRPVREFPNVPTP 125
Query: 160 STLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGE--EIGFNTEVYAAYEVDRIARV 217
G+DL+VVRE +Y G EH + + ++ + ++I R
Sbjct: 126 Y-----AGRGIDLVVVRENVEDLYAG-------IEHMQTPSVAQTLKLISWKGSEKIVRF 173
Query: 218 AFETARKR-HGKLCSVDKANVLEVMVYMLKQ-FSLVAH 253
AFE AR K+ K+N++++ LK+ F VA
Sbjct: 174 AFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQ 211
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 93/217 (42%), Gaps = 39/217 (17%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLA-----GSLEGIEFAFQEMPMGGSALDLVGVPLPEET 101
I + GDGIGPE+ A V+ A GS E + E+ G A LV P+ET
Sbjct: 27 ILYIEGDGIGPEITNAAIKVINKAVERAYGSSR--EIKWLEVYAGEKAEKLVNDRFPKET 84
Query: 102 LAAAKQSDAVLLGAIG---GYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVD 158
+ VL G + G W ++ + IR L ++AN+RP + L
Sbjct: 85 QEMLLKYRVVLKGPLETPIGKGW---------KSVNVAIRLMLDLYANIRPVKYIEGL-- 133
Query: 159 SSTLKKEVAEGVDLMVVRELTGGIYFG-----------KPRGYGVTEHGEEI----GFNT 203
S LK E VD+++ RE T +Y G K R + E EI G
Sbjct: 134 ESPLKH--PEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGI 191
Query: 204 EVYAAYEVDRIARVAFETA-RKRHGKLCSVDKANVLE 239
+V + Y+ RI R+A + A + K+ + K NV++
Sbjct: 192 KVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMK 228
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 39/188 (20%)
Query: 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGV------PL 97
+Y+++ + GDGIGPE ++K+V K+ F+ +P+ + D+ + +
Sbjct: 21 KYTVSFIEGDGIGPE---ISKSVKKI--------FSAANVPIEWESCDVSPIFVNGLTTI 69
Query: 98 PEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLV 157
P+ + + ++ L G + K + L L +R+ +FAN+RPA +
Sbjct: 70 PDPAVQSITKNLVALKGPL-ATPIGKGHRSLN-----LTLRKTFGLFANVRPAKSIEGF- 122
Query: 158 DSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGF--NTEVYAAYEVDRIA 215
K E VDL+++RE T G Y G EH G + ++ +R+
Sbjct: 123 ------KTTYENVDLVLIRENTEGEYSG-------IEHIVCPGVVQSIKLITRDASERVI 169
Query: 216 RVAFETAR 223
R AFE AR
Sbjct: 170 RYAFEYAR 177
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 39/188 (20%)
Query: 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGV------PL 97
+Y+++ + GDGIGPE ++K+V K+ F+ +P+ + D+ + +
Sbjct: 21 KYTVSFIEGDGIGPE---ISKSVKKI--------FSAANVPIEWESCDVSPIFVNGLTTI 69
Query: 98 PEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLV 157
P+ + + ++ L G + K + L L +R+ +FAN+RPA +
Sbjct: 70 PDPAVQSITKNLVALKGPL-ATPIGKGHRSLN-----LTLRKTFGLFANVRPAKSIEGF- 122
Query: 158 DSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGF--NTEVYAAYEVDRIA 215
K E VDL+++RE T G Y G EH G + ++ +R+
Sbjct: 123 ------KTTYENVDLVLIRENTEGEYSG-------IEHIVCPGVVQSIKLITRDASERVI 169
Query: 216 RVAFETAR 223
R AFE AR
Sbjct: 170 RYAFEYAR 177
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 30/200 (15%)
Query: 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLA 103
R+++TL+PGDG+G E+ + + F + +P+ +++ E
Sbjct: 17 RFTVTLIPGDGVGKEITDSVRTI-----------FEAENIPIDWETINIKQTDHKEGVYE 65
Query: 104 AAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLK 163
A + +G G W + + +R+ L ++AN+ L S
Sbjct: 66 AVESLKRNKIGLKG--LWHTPADQTGHGSLNVALRKQLDIYANV-------ALFKSLKGV 116
Query: 164 KEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGF--NTEVYAAYEVDRIARVAFET 221
K +DL+V+RE T G + G EH G + +V + +RIAR AF+
Sbjct: 117 KTRIPDIDLIVIRENTEGEFSG-------LEHESVPGVVESLKVMTRPKTERIARFAFDF 169
Query: 222 ARKRHGK-LCSVDKANVLEV 240
A+K + K + +V KAN++++
Sbjct: 170 AKKYNRKSVTAVHKANIMKL 189
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 30/200 (15%)
Query: 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLA 103
R+++TL+PGDG+G E+ + + F + +P+ +++ E
Sbjct: 17 RFTVTLIPGDGVGKEITDSVRTI-----------FEAENIPIDWETINIKQTDHKEGVYE 65
Query: 104 AAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLK 163
A + +G G W + + +R+ L ++AN+ L S
Sbjct: 66 AVESLKRNKIGLKG--LWHTPADQTGHGSLNVALRKQLDIYANV-------ALFKSLKGV 116
Query: 164 KEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGF--NTEVYAAYEVDRIARVAFET 221
K +DL+V+RE T G + G EH G + +V + +RIAR AF+
Sbjct: 117 KTRIPDIDLIVIRENTEGEFSG-------LEHESVPGVVESLKVXTRPKTERIARFAFDF 169
Query: 222 ARKRHGK-LCSVDKANVLEV 240
A+K + K + +V KAN+ ++
Sbjct: 170 AKKYNRKSVTAVHKANIXKL 189
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLA------GSLEGIEFAFQEMPMGGSALDLVGVPLPEE 100
+ + GDG+GPEV+ A V+ A GS + E+ G A + G LP+
Sbjct: 38 VAFIRGDGVGPEVVESALKVVDAAVKKVYGGSR---RIVWWELLAGHLAREKCGELLPKA 94
Query: 101 TLAAAKQSDAVLLGAI-----GGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQ 155
TL + + L G + GY+ + + IR+ L ++AN+RP Q
Sbjct: 95 TLEGIRLARVALKGPLETPVGTGYR-----------SLNVAIRQALDLYANIRPVRYYGQ 143
Query: 156 LVDSSTLKKEVAEGVDLMVVRELTGGIYFG 185
+ A+ VD+++ RE T +Y G
Sbjct: 144 -----PAPHKYADRVDMVIFRENTEDVYAG 168
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 47 ITLLPGDGIGPEVIAVAKNVLKLA--GSLEG-IEFAFQEMPMGGSALDLVGVPLPEETLA 103
I + GDG GP++ A VL+ A + +G + ++E+ G A + G LP ETL
Sbjct: 22 IPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLD 81
Query: 104 AAKQSDAVLLG----AIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDS 159
++ + G +GG N + +R+ L +F LRP +
Sbjct: 82 VIREYFIAIKGPLTTPVGGGIRSLN----------VALRQELDLFVXLRPVRYFTGV--P 129
Query: 160 STLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGF 201
S +K+ E D+++ RE T IY G G E + I F
Sbjct: 130 SPVKR--PEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISF 169
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 47 ITLLPGDGIGPEVIAVAKNVL-----KLAGSLEGIEFAFQEMPMGGSALDLVGVP--LPE 99
I + GDGIG +V ++V+ K+ G + A+ E+ G A+ L G LP+
Sbjct: 29 IPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQR--QIAWMELFAGQKAVQLYGEGQYLPD 86
Query: 100 ETLAAAKQSDAVLLG----AIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQ 155
ET+AA ++ + G +GG N + +R+ L ++ LRP +
Sbjct: 87 ETMAAIREYKVAIKGPLETPVGGGIRSLN----------VAMRQDLDLYVCLRPV----R 132
Query: 156 LVDSSTLKKEVAEGVDLMVVRELTGGIYFG 185
+ + E VD+++ RE + IY G
Sbjct: 133 YFEGTPSPMRHPEKVDMVIFRENSEDIYAG 162
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 80 FQEMPMGGSALDLVGVPLPEETLAAAKQS--DAVLLGAIGGYK 120
FQE+P G S D VG PLP LAAA Q+ +AV I Y+
Sbjct: 559 FQEVPNGQSKEDTVGRPLPH--LAAAMQASGEAVYCDDIPRYE 599
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 80 FQEMPMGGSALDLVGVPLPEETLAAAKQS--DAVLLGAIGGYK 120
FQE+P G S D VG PLP LAAA Q+ +AV I Y+
Sbjct: 560 FQEVPNGQSKEDTVGRPLPH--LAAAMQASGEAVYCDDIPRYE 600
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 80 FQEMPMGGSALDLVGVPLPEETLAAAKQS--DAVLLGAIGGYK 120
FQE+P G S D VG PLP LAAA Q+ +AV I Y+
Sbjct: 560 FQEVPNGQSKEDTVGRPLPH--LAAAMQASGEAVYCDDIPRYE 600
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 80 FQEMPMGGSALDLVGVPLPEETLAAAKQS--DAVLLGAIGGYKWDKNEKHLK 129
FQE+P G S D+VG PLP LAA Q+ +AV I Y +NE L+
Sbjct: 561 FQEVPKGQSEEDMVGRPLPH--LAADMQASGEAVYCDDIPRY---ENELSLR 607
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 80 FQEMPMGGSALDLVGVPLPEETLAAAKQS--DAVLLGAIGGYKWDKNEKHLK 129
FQE+P G S D+VG PLP LAA Q+ +AV I Y +NE L+
Sbjct: 561 FQEVPKGQSEEDMVGRPLPH--LAADMQASGEAVYCDDIPRY---ENELSLR 607
>pdb|2ON5|A Chain A, Structure Of Nagst-2
pdb|2ON5|B Chain B, Structure Of Nagst-2
pdb|2ON5|C Chain C, Structure Of Nagst-2
pdb|2ON5|D Chain D, Structure Of Nagst-2
pdb|2ON5|E Chain E, Structure Of Nagst-2
pdb|2ON5|F Chain F, Structure Of Nagst-2
pdb|2ON5|G Chain G, Structure Of Nagst-2
pdb|2ON5|H Chain H, Structure Of Nagst-2
Length = 206
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 45 YSITLLPGDGIGPEVIAVAKNVLKLAGS-LEGIEFAFQEMPMGGSALDLVGVPLPEETLA 103
Y +T G G+ + + + LAG E + + FQE P + +P+ EE
Sbjct: 4 YKLTYFAGRGLAEPI----RQIFALAGQKYEDVRYTFQEWPKHKDEMPFGQIPVLEEDGK 59
Query: 104 AAKQSDAV 111
QS A+
Sbjct: 60 QLAQSFAI 67
>pdb|1PC2|A Chain A, Solution Structure Of Human Mitochondria Fission Protein
Fis1
Length = 152
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 94 GVPLPEETL---AAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPA 150
G+ L EE L + +Q D V A+G Y+ + EK LK GLLQ A
Sbjct: 54 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE------PQNNQA 107
Query: 151 TVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFG 185
L +L+D + K D +V + GG+ G
Sbjct: 108 KELERLIDKAMKK-------DGLVGMAIVGGMALG 135
>pdb|1NZN|A Chain A, Cytosolic Domain Of The Human Mitchondrial Fission Protein
Fis1 Adopts A Tpr Fold
Length = 126
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 94 GVPLPEETL---AAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQ 136
G+ L EE L + +Q D V A+G Y+ + EK LK GLLQ
Sbjct: 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102
>pdb|1IYG|A Chain A, Solution Structure Of Rsgi Ruh-001, A Fis1p-Like And Cgi-
135 Homologous Domain From A Mouse Cdna
Length = 133
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 94 GVPLPEETL---AAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQI 137
G+ L EE L + +Q D V A+G Y+ + EK LK GLLQ
Sbjct: 61 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 107
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 71 GSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKP 130
G ++ I+ ++ + M V +PE A +Q ++V+LG +N K +P
Sbjct: 38 GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG-------RNIKVGRP 90
Query: 131 ------ETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYF 184
+ + Q+ E + F + A+V L D K V E + L
Sbjct: 91 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI--KSVFEAFGKIKSCTLARDPTT 148
Query: 185 GKPRGYGVTEH 195
GK +GYG E+
Sbjct: 149 GKHKGYGFIEY 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,540,496
Number of Sequences: 62578
Number of extensions: 306655
Number of successful extensions: 873
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 61
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)