Query 024132
Match_columns 272
No_of_seqs 125 out of 1064
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:14:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02329 3-isopropylmalate deh 100.0 1.7E-71 3.7E-76 532.3 23.7 269 1-271 1-275 (409)
2 COG0473 LeuB Isocitrate/isopro 100.0 6.7E-71 1.4E-75 514.5 20.4 217 43-271 2-222 (348)
3 TIGR00169 leuB 3-isopropylmala 100.0 5.6E-68 1.2E-72 501.6 23.1 225 46-271 1-227 (349)
4 PRK00772 3-isopropylmalate deh 100.0 7.5E-68 1.6E-72 501.9 23.6 226 44-271 2-230 (358)
5 TIGR02089 TTC tartrate dehydro 100.0 8.7E-68 1.9E-72 500.7 23.1 223 44-271 3-229 (352)
6 PRK03437 3-isopropylmalate deh 100.0 1.5E-67 3.3E-72 497.5 23.8 222 41-271 1-226 (344)
7 PRK08194 tartrate dehydrogenas 100.0 2.6E-67 5.6E-72 497.3 22.9 220 44-271 3-226 (352)
8 PRK08997 isocitrate dehydrogen 100.0 9.8E-65 2.1E-69 476.6 21.6 207 45-271 3-213 (334)
9 PRK14025 multifunctional 3-iso 100.0 1.7E-64 3.6E-69 474.4 21.6 202 44-271 1-210 (330)
10 PLN00118 isocitrate dehydrogen 100.0 1E-63 2.2E-68 474.6 21.3 207 43-271 40-250 (372)
11 TIGR02088 LEU3_arch isopropylm 100.0 2.8E-63 6.1E-68 465.2 21.0 203 47-271 1-205 (322)
12 PLN00123 isocitrate dehydrogen 100.0 4.3E-63 9.4E-68 468.2 22.2 204 41-271 27-234 (360)
13 PF00180 Iso_dh: Isocitrate/is 100.0 9.9E-64 2.1E-68 473.5 15.5 222 46-271 1-226 (348)
14 PRK09222 isocitrate dehydrogen 100.0 1.7E-62 3.7E-67 477.8 21.9 207 43-271 3-215 (482)
15 PRK06451 isocitrate dehydrogen 100.0 4.9E-62 1.1E-66 468.6 21.6 215 47-271 26-283 (412)
16 PRK07006 isocitrate dehydrogen 100.0 1.4E-61 3E-66 465.6 22.0 218 43-271 19-283 (409)
17 TIGR02924 ICDH_alpha isocitrat 100.0 8.9E-62 1.9E-66 471.5 20.2 204 46-271 2-211 (473)
18 TIGR00175 mito_nad_idh isocitr 100.0 3.3E-61 7.1E-66 453.4 21.8 206 43-271 2-211 (333)
19 TIGR00183 prok_nadp_idh isocit 100.0 4.9E-61 1.1E-65 463.2 22.0 215 47-271 29-290 (416)
20 PRK07362 isocitrate dehydrogen 100.0 1.4E-60 3.1E-65 459.5 21.0 198 46-253 30-259 (474)
21 KOG0785 Isocitrate dehydrogena 100.0 1.8E-59 3.9E-64 430.0 11.0 214 36-271 27-244 (365)
22 KOG0784 Isocitrate dehydrogena 100.0 2.6E-56 5.6E-61 413.3 15.9 210 40-272 38-251 (375)
23 KOG0786 3-isopropylmalate dehy 100.0 1.7E-55 3.6E-60 396.1 12.0 224 42-271 2-230 (363)
24 PRK08299 isocitrate dehydrogen 100.0 5.5E-53 1.2E-57 404.0 19.0 212 44-271 7-257 (402)
25 PLN00103 isocitrate dehydrogen 100.0 4.9E-51 1.1E-55 391.4 19.7 216 45-271 10-261 (410)
26 TIGR00127 nadp_idh_euk isocitr 100.0 5.4E-46 1.2E-50 356.2 19.2 220 45-271 7-258 (409)
27 COG0538 Icd Isocitrate dehydro 100.0 1.7E-45 3.7E-50 345.8 18.0 219 43-271 17-279 (407)
28 PTZ00435 isocitrate dehydrogen 100.0 1.2E-44 2.7E-49 347.3 18.6 221 44-271 9-260 (413)
29 PLN03065 isocitrate dehydrogen 100.0 4.2E-44 9.2E-49 347.7 20.6 235 25-271 56-328 (483)
30 PLN00096 isocitrate dehydrogen 99.9 2.1E-21 4.5E-26 185.3 14.8 191 68-271 19-252 (393)
31 KOG1526 NADP-dependent isocitr 99.2 1.7E-10 3.7E-15 107.4 12.4 189 76-271 46-269 (422)
32 TIGR00853 pts-lac PTS system, 64.5 25 0.00054 27.4 6.0 57 43-115 2-58 (95)
33 PTZ00435 isocitrate dehydrogen 56.7 5.7 0.00012 39.3 1.4 19 169-187 127-145 (413)
34 PRK02746 pdxA 4-hydroxythreoni 56.1 9.5 0.00021 36.9 2.7 21 44-64 9-31 (345)
35 PRK03743 pdxA 4-hydroxythreoni 55.5 9.7 0.00021 36.6 2.7 20 45-64 4-25 (332)
36 PRK00232 pdxA 4-hydroxythreoni 54.6 11 0.00024 36.3 2.9 20 45-64 5-26 (332)
37 cd05564 PTS_IIB_chitobiose_lic 51.2 46 0.00099 25.8 5.5 54 46-115 1-54 (96)
38 PRK05312 pdxA 4-hydroxythreoni 50.4 12 0.00027 36.0 2.5 20 45-64 4-25 (336)
39 COG1995 PdxA Pyridoxal phospha 50.2 12 0.00026 36.0 2.4 18 44-61 3-22 (332)
40 PRK01909 pdxA 4-hydroxythreoni 50.2 14 0.00029 35.6 2.8 21 44-64 5-27 (329)
41 PRK03946 pdxA 4-hydroxythreoni 48.7 12 0.00026 35.6 2.2 19 45-63 2-22 (307)
42 PF00582 Usp: Universal stress 48.5 25 0.00054 26.6 3.6 27 207-233 11-37 (140)
43 TIGR00127 nadp_idh_euk isocitr 48.5 8.7 0.00019 38.0 1.2 19 169-187 124-142 (409)
44 PRK09590 celB cellobiose phosp 47.4 54 0.0012 26.1 5.4 57 45-115 2-58 (104)
45 PRK03371 pdxA 4-hydroxythreoni 46.9 14 0.00031 35.4 2.4 20 45-64 3-24 (326)
46 COG0655 WrbA Multimeric flavod 43.5 1E+02 0.0022 26.8 7.1 66 46-115 5-83 (207)
47 PF03358 FMN_red: NADPH-depend 41.7 73 0.0016 25.8 5.6 65 45-115 1-78 (152)
48 PRK11175 universal stress prot 39.1 2.9E+02 0.0063 24.8 9.8 23 211-233 172-195 (305)
49 cd01988 Na_H_Antiporter_C The 38.0 44 0.00095 25.7 3.6 27 209-235 10-36 (132)
50 PRK10499 PTS system N,N'-diace 37.6 1.1E+02 0.0024 24.3 5.8 55 45-115 4-58 (106)
51 PF05768 DUF836: Glutaredoxin- 37.5 57 0.0012 24.1 4.0 38 59-98 12-51 (81)
52 TIGR00557 pdxA 4-hydroxythreon 36.3 25 0.00054 33.7 2.2 19 46-64 1-21 (320)
53 PRK15005 universal stress prot 35.4 54 0.0012 25.9 3.8 23 211-233 17-39 (144)
54 PRK03767 NAD(P)H:quinone oxido 33.6 2.5E+02 0.0054 24.2 8.0 16 101-116 63-78 (200)
55 TIGR02069 cyanophycinase cyano 33.0 2.3E+02 0.005 25.8 7.9 61 45-115 29-90 (250)
56 PLN03065 isocitrate dehydrogen 32.5 17 0.00037 36.7 0.5 38 169-212 195-232 (483)
57 COG2257 Uncharacterized homolo 31.7 57 0.0012 25.8 3.1 70 31-107 7-77 (92)
58 PRK09982 universal stress prot 31.4 50 0.0011 26.7 3.0 26 210-235 15-40 (142)
59 PF08302 tRNA_lig_CPD: Fungal 30.3 1.7E+02 0.0037 27.0 6.6 65 207-271 80-180 (257)
60 cd01989 STK_N The N-terminal d 30.2 46 0.001 26.5 2.5 26 209-234 10-35 (146)
61 cd00293 USP_Like Usp: Universa 28.7 88 0.0019 23.2 3.8 26 208-233 9-34 (130)
62 cd06062 H2MP_MemB-H2up Endopep 26.4 1E+02 0.0022 25.4 4.1 48 53-116 14-61 (146)
63 cd06063 H2MP_Cyano-H2up This g 26.2 83 0.0018 26.0 3.5 47 53-116 14-60 (146)
64 TIGR03431 PhnD phosphonate ABC 24.9 1.2E+02 0.0027 27.2 4.7 50 31-82 16-65 (288)
65 PRK08306 dipicolinate synthase 23.4 1.4E+02 0.003 27.8 4.8 60 45-114 3-62 (296)
66 PRK10466 hybD hydrogenase 2 ma 22.6 1.2E+02 0.0026 25.7 3.9 47 53-115 16-62 (164)
67 TIGR00072 hydrog_prot hydrogen 22.6 1.3E+02 0.0028 24.8 4.0 47 53-115 13-59 (145)
68 PRK00877 hisD bifunctional his 22.5 2.1E+02 0.0045 28.7 5.9 25 201-225 388-412 (425)
69 COG0391 Uncharacterized conser 22.5 68 0.0015 30.9 2.5 57 97-155 179-235 (323)
70 cd01987 USP_OKCHK USP domain i 20.9 1.1E+02 0.0024 23.5 3.1 25 210-234 11-35 (124)
71 PRK13606 LPPG:FO 2-phospho-L-l 20.2 51 0.0011 31.4 1.2 112 96-223 174-302 (303)
72 PF14542 Acetyltransf_CG: GCN5 20.0 1.2E+02 0.0025 22.6 2.9 21 211-231 40-60 (78)
No 1
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=1.7e-71 Score=532.33 Aligned_cols=269 Identities=68% Similarity=1.020 Sum_probs=230.8
Q ss_pred Ccccccccceee---cccccccccccc-cCCccccccccccCCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCC
Q 024132 1 MAASVQLNAKLL---GPAFIVKPATKH-FLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGI 76 (272)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~ 76 (272)
|++..|-|+.+- -+.|--...+.| |--|.+++|...-+ ++++|+|+||||||||||||+++++||+++..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~ 78 (409)
T PLN02329 1 MAAFLQTNIRLNSIKIVPGRYSSLTDHQFRAPYRIRCAAASP--GKKRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGL 78 (409)
T ss_pred CCccccccchhhhhccccccccCCCcccccchhhhccccccc--ccceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCC
Confidence 444445554433 333333333444 44688999987765 445699999999999999999999999999888889
Q ss_pred eeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCC
Q 024132 77 EFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQL 156 (272)
Q Consensus 77 ~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~ 156 (272)
+|+|+++++|+++|+++|++||++|++.|+++|++||||+|+|+|+..+...+++++++.||++|||||||||+|++||+
T Consensus 79 ~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~~~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~ 158 (409)
T PLN02329 79 EFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWDKNEKHLRPEMALFYLRRDLKVFANLRPATVLPQL 158 (409)
T ss_pred ceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCCCCcccccccccHHHHHHHcCCeEeeeeeeccCCC
Confidence 99999999999999999999999999999999999999999998754334456778899999999999999999999999
Q ss_pred ccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Q 024132 157 VDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKAN 236 (272)
Q Consensus 157 ~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaN 236 (272)
++.||||++..+++|||||||||||+|+|.+++......++++|+++++|||+++|||+|+||+||++|+++||+|||+|
T Consensus 159 ~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaN 238 (409)
T PLN02329 159 VDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKAN 238 (409)
T ss_pred CCcCcccccccCCceEEEEEECCCCeecCCCcceecccCCceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 98889998777899999999999999999864321011245789999999999999999999999999988999999999
Q ss_pred cccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 237 VLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 237 Vl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
||++++||+++|+++|++ +|++++++||+++||||
T Consensus 239 Vl~t~~lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV 275 (409)
T PLN02329 239 VLDASILWRKRVTALASEYPDVELSHMYVDNAAMQLI 275 (409)
T ss_pred CccchHHHHHHHHHHHhhCCCcccchhHHHHHHHHHh
Confidence 999889999999999994 89999999999999997
No 2
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-71 Score=514.48 Aligned_cols=217 Identities=45% Similarity=0.692 Sum_probs=198.4
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWD 122 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~ 122 (272)
++|+|+||||||||||||+++++||+++.+ ++++|+|+++++|+++|++||++||++|++.|+++|++|||++|+|+|.
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~-~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~ 80 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAE-FGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWD 80 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhh-cCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCC
Confidence 468999999999999999999999999998 7899999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEE
Q 024132 123 KNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFN 202 (272)
Q Consensus 123 ~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~ 202 (272)
+.+ ...++.++.|||+|||||||||+|++||++ +|+. +++|||||||||||+|+|.+++. . .+.++|++
T Consensus 81 ~~~--~~~~~~ll~lRk~l~lyANlRP~k~~~~~k--~~~~----~~~D~viVREnTeG~Y~G~~~~~--~-~~~eva~~ 149 (348)
T COG0473 81 PLP--RPERGLLLALRKELDLYANLRPAKSLPGLK--SPLV----KGVDIVIVRENTEGLYFGEEGRI--L-GGGEVAID 149 (348)
T ss_pred CCC--CcccchHHHHHHhcCceeeeeecccCCCCC--CccC----CCccEEEEeeCCCccccCCCccc--c-CCCeEEEE
Confidence 532 334568999999999999999999999986 4543 68999999999999999997641 1 12269999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 203 TEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 203 ~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+++|||+++|||+|+|||+|++| +||||+|||+|||+ +++||+++|+|+|++ +|+++|++||+++||||
T Consensus 150 ~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV 222 (348)
T COG0473 150 TKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLV 222 (348)
T ss_pred EEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHh
Confidence 99999999999999999999999 89999999999999 889999999999984 89999999999999998
No 3
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=5.6e-68 Score=501.56 Aligned_cols=225 Identities=53% Similarity=0.828 Sum_probs=201.8
Q ss_pred EEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCC
Q 024132 46 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNE 125 (272)
Q Consensus 46 ~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~ 125 (272)
+|+||||||||||||+++++||+++.+.++++|+|.++++|+++|+++|++||++++++|+++|++||||+++|++...+
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 59999999999999999999999998777899999999999999999999999999999999999999999999764322
Q ss_pred CCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeEe
Q 024132 126 KHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEV 205 (272)
Q Consensus 126 ~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~ 205 (272)
...++.+.++.||++|||||||||+|++||+++.||+|++.++++|||||||||||+|+|.+++.. ....+++++++++
T Consensus 81 ~~~~~~~~~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~-~~~~~~~a~~~~~ 159 (349)
T TIGR00169 81 RDQRPEQGLLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRF-GAGGEGEAWDTEV 159 (349)
T ss_pred ccccchhhHHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCcccc-CCCCcceEEEEEE
Confidence 222334559999999999999999999999988789986656899999999999999999864321 1113578999999
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 206 YAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 206 iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
|||+++|||+|+||+||++|+++||+|||+|||++++||+++|+|+|++ +|++++++||+++||||
T Consensus 160 ~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlkt~glf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv 227 (349)
T TIGR00169 160 YTKPEIERIARVAFEMARKRRKKVTSVDKANVLESSRLWRKTVEEIAKEYPDVELEHQYIDNAAMQLV 227 (349)
T ss_pred eeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccchhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHHH
Confidence 9999999999999999999988999999999999779999999999994 89999999999999997
No 4
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-68 Score=501.90 Aligned_cols=226 Identities=51% Similarity=0.786 Sum_probs=202.9
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+++|+||||||||||||+++++||+++.+.++++|+|.++++|.++|+++|++||++++++|+++|++||||+++|.++.
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 48999999999999999999999999987778999999999999999999999999999999999999999999997643
Q ss_pred CCCC-CCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEE
Q 024132 124 NEKH-LKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFN 202 (272)
Q Consensus 124 ~~~~-~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~ 202 (272)
.+.. ....+ ++.||++||||+||||+|++||+++.||||++.++++|||||||||||+|+|.+++.. ...++++|++
T Consensus 82 ~~~~~~~~~~-~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~-~~~~~~~a~~ 159 (358)
T PRK00772 82 LPPDVRPERG-LLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGRE-GLGGEERAFD 159 (358)
T ss_pred CCccCCChhh-HHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCccccc-CCCCceeEEE
Confidence 2211 11234 9999999999999999999999987789986556799999999999999999864321 1234578999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 203 TEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 203 ~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+++|||++++||+|+||+||++|+++||++||+|||++++||+++|+|+|++ +|++++++||+++||||
T Consensus 160 ~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~~~glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv 230 (358)
T PRK00772 160 TMVYTREEIERIARVAFELARKRRKKVTSVDKANVLESSRLWREVVTEVAKEYPDVELSHMYVDNAAMQLV 230 (358)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccccchHHHHHHHHHHhHCCCceEEEEeHHHHHHHHh
Confidence 9999999999999999999999988999999999999889999999999994 89999999999999997
No 5
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=8.7e-68 Score=500.74 Aligned_cols=223 Identities=33% Similarity=0.468 Sum_probs=200.9
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccC-CeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEG-IEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWD 122 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g-~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~ 122 (272)
+|+|+||||||||||||+++++||+++.++++ ++|+|+++++|+++|+++|+++|++|+++|+++|++||||+|+|.+.
T Consensus 3 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~ 82 (352)
T TIGR02089 3 QYRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALV 82 (352)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCC
Confidence 58999999999999999999999999987774 99999999999999999999999999999999999999999999642
Q ss_pred CCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEE
Q 024132 123 KNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFN 202 (272)
Q Consensus 123 ~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~ 202 (272)
+...++.+.++.||++|||||||||+|++||++ ||+|++..+++|||||||||||+|+|.++... ....+++|++
T Consensus 83 --~~~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~--sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~~~~~~a~~ 157 (352)
T TIGR02089 83 --PDHISLWGLLLKIRREFDQYANVRPAKLLPGVT--SPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RGTDEEVATQ 157 (352)
T ss_pred --CCccCchhhHHHHHHHcCCeEEEEEeecCCCCC--CccccccCCCCCEEEEEecCCccccccccccc-CCccceeEEE
Confidence 223345566999999999999999999999986 79987666799999999999999999843211 1223578999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhc--CcceeeeEeeecccceec
Q 024132 203 TEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 203 ~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv 271 (272)
+++|||+++|||+|+||+||++|+||||+|||+|||+ +++||+++|+++|+ ++|+++|++||++|||||
T Consensus 158 ~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv 229 (352)
T TIGR02089 158 NAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEWDSYHIDALAARFV 229 (352)
T ss_pred eEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceEeeehHHHHHHHHh
Confidence 9999999999999999999999988999999999999 78999999999999 489999999999999997
No 6
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-67 Score=497.53 Aligned_cols=222 Identities=33% Similarity=0.470 Sum_probs=198.8
Q ss_pred CCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCC
Q 024132 41 PTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120 (272)
Q Consensus 41 ~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~ 120 (272)
|.++++|+||||||||||||+++++||+++.++ +++|+|.++++|+++|+++|++||++++++|+++|++||||+|+|+
T Consensus 1 m~k~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~-~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~ 79 (344)
T PRK03437 1 MAKTMKLAVIPGDGIGPEVVAEALKVLDAVAAG-GPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPS 79 (344)
T ss_pred CCceEEEEEECCCCccHHHHHHHHHHHHHHHhc-CCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCC
Confidence 346799999999999999999999999988766 7999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceE
Q 024132 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIG 200 (272)
Q Consensus 121 ~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA 200 (272)
.+. .....+.++.||++||||+||||+|++||++ ||+|+ .+++|||||||||||+|+|.++.. .....+++|
T Consensus 80 ~~~---~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~--sp~k~--~~~iD~vivREnteG~Y~g~~~~~-~~~~~~~~a 151 (344)
T PRK03437 80 VPS---GVLERGLLLKLRFALDHYVNLRPSKLYPGVT--SPLAG--PGDIDFVVVREGTEGPYTGNGGAL-RVGTPHEVA 151 (344)
T ss_pred CCC---CCcccchHHHHHHHcCCeEEEEEeecCCCCC--CcCCC--CCCCCEEEEEECCCccccCCcccc-cCCCcceeE
Confidence 432 1112355899999999999999999999986 78874 568999999999999999985322 122346789
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc--CcceeeeEeeecccceec
Q 024132 201 FNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 201 ~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv 271 (272)
+++++|||++++||+|+||+||++| +|+||+|||+|||+ +++||+++|+|+|+ ++|++++++||++|||||
T Consensus 152 ~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv 226 (344)
T PRK03437 152 TEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQHVDAATIFMV 226 (344)
T ss_pred EEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceEeehhHHHHHHHHh
Confidence 9999999999999999999999998 67899999999999 78999999999999 489999999999999997
No 7
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-67 Score=497.28 Aligned_cols=220 Identities=30% Similarity=0.457 Sum_probs=198.2
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhccc-CCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLE-GIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWD 122 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~-g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~ 122 (272)
+|+|+||||||||||||+++++||+++.+++ +++|||+++++|.++|+++|+++|+++++.|+++|++||||+|+|.|.
T Consensus 3 ~~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~ 82 (352)
T PRK08194 3 QFKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLV 82 (352)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcC
Confidence 5899999999999999999999999997765 799999999999999999999999999999999999999999999753
Q ss_pred CCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEE
Q 024132 123 KNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFN 202 (272)
Q Consensus 123 ~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~ 202 (272)
+ ++.+.++.++.||++|||||||||+|++||++ ||||+ .+++|||||||||||+|+|.++.. +....++|++
T Consensus 83 ~--~~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~--splk~--~~~iD~vivREnteG~Y~g~~~~~--~~g~~~~a~~ 154 (352)
T PRK08194 83 P--DHISLWGLLIKIRREFEQVINIRPAKQLRGIK--SPLAN--PKDFDLLVVRENSEGEYSEVGGRI--HRGEDEIAIQ 154 (352)
T ss_pred C--CCCCchhhHHHHHHHcCCEEEEEeeecCCCCC--CCCCC--CCCCCEEEEEeCCCccccCCCccc--cCCccceEEE
Confidence 2 22333455999999999999999999999996 79874 478999999999999999985322 1113568999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhc--CcceeeeEeeecccceec
Q 024132 203 TEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 203 ~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv 271 (272)
+++|||+++|||+|+||++|++|+++||+|||+|||+ +++||+++|+|+|+ ++|++++++||++|||||
T Consensus 155 ~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv 226 (352)
T PRK08194 155 NAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETDSQHIDALAAFFV 226 (352)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceeeehhHHHHHHHHh
Confidence 9999999999999999999999988999999999999 78999999999999 489999999999999997
No 8
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-65 Score=476.59 Aligned_cols=207 Identities=28% Similarity=0.440 Sum_probs=187.5
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCC
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKN 124 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~ 124 (272)
|+|+||||||||||||+++++||+++ +++|+|+++++|.++|+++|+++|++++++|+++|++||||+|+|.+++
T Consensus 3 ~~I~vipGDGIGpEV~~~a~~vl~~~----~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~~- 77 (334)
T PRK08997 3 QTITVIPGDGIGPSIIDATLKILDKL----GCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGEG- 77 (334)
T ss_pred cEEEEECCCcccHHHHHHHHHHHHhc----CCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCcC-
Confidence 78999999999999999999999986 4799999999999999999999999999999999999999999986532
Q ss_pred CCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeE
Q 024132 125 EKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTE 204 (272)
Q Consensus 125 ~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~ 204 (272)
..+.++.||++|||||||||+|++||++ +|+ +++|||||||||||+|+|.++... .++.+|++++
T Consensus 78 -----~~~~~~~LR~~ldlyanvRP~k~~~g~~--~~~-----~~iD~vivREnteG~Y~g~~~~~~---~~~~~a~~~~ 142 (334)
T PRK08997 78 -----FTSINVTLRKKFDLYANVRPVLSFPGTK--ARY-----DNIDIITVRENTEGMYSGEGQTVS---EDGETAEATS 142 (334)
T ss_pred -----ccchHHHHHHHcCCeEEEeecccCCCCC--Ccc-----CCcCEEEEEeccCceecCccceec---CCCceEEEEE
Confidence 2356999999999999999999999986 454 589999999999999999853211 1124899999
Q ss_pred eecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 205 VYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 205 ~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+|||+++|||+|+||++|++| +|+||+|||+|||+ +++||+++|+|+|++ +|+++|++||++|||||
T Consensus 143 ~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~~vDa~~~~lv 213 (334)
T PRK08997 143 IITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIVDATCMQLV 213 (334)
T ss_pred EeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHh
Confidence 999999999999999999999 57899999999999 779999999999994 89999999999999997
No 9
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-64 Score=474.39 Aligned_cols=202 Identities=34% Similarity=0.507 Sum_probs=186.3
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+++|+||||||||||||+++++||+++ +++|+|+++++|.++|+++|+++|++++++|+++|++||||+|+|.
T Consensus 1 m~~I~vipGDGIGpEv~~~~~~vl~~~----~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~--- 73 (330)
T PRK14025 1 MHKICVIEGDGIGKEVVPAALHVLEAT----GLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA--- 73 (330)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHhc----CCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc---
Confidence 579999999999999999999999977 4899999999999999999999999999999999999999999873
Q ss_pred CCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEe
Q 024132 124 NEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNT 203 (272)
Q Consensus 124 ~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~ 203 (272)
.+.++.||++|||||||||+|++||++ +|+ +++|||||||||||+|+|.++ ...+++++++
T Consensus 74 -------~~~~~~LR~~ldlyanvRP~r~~pg~~--~~~-----~~iD~vivREnteG~Y~g~~~-----~~~~~~~~~~ 134 (330)
T PRK14025 74 -------ADVIVKLRRILDTYANVRPVKSYKGVK--CLY-----PDIDYVIVRENTEGLYKGIEA-----EIADGVTVAT 134 (330)
T ss_pred -------cchHHHHHHHcCCeEEEEEeecCCCCC--Ccc-----CCcCEEEEEECCCceecCccc-----ccCCCceEEe
Confidence 245899999999999999999999986 343 589999999999999999853 2345789999
Q ss_pred EeecHHHHHHHHHHHHHHHHhC----C-CcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 204 EVYAAYEVDRIARVAFETARKR----H-GKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 204 ~~iTr~~~eRIar~AFe~A~~r----~-kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
++|||+++|||+|+||+||++| + |+||++||+|||+ +++||+++|+|+|++ +|++++++||++|||||
T Consensus 135 ~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv 210 (330)
T PRK14025 135 RVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKAEDYYVDAMNMYII 210 (330)
T ss_pred EeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHh
Confidence 9999999999999999999998 3 6799999999999 789999999999994 89999999999999997
No 10
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1e-63 Score=474.63 Aligned_cols=207 Identities=26% Similarity=0.369 Sum_probs=188.5
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWD 122 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~ 122 (272)
..++|+||||||||||||+++++||+++ +++|+|+++++|.++|+++|+++|++++++|+++|++||||+++|...
T Consensus 40 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~ 115 (372)
T PLN00118 40 TPITATLFPGDGIGPEIAESVKQVFTAA----GVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGK 115 (372)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHhc----CCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccc
Confidence 3489999999999999999999999987 489999999999999999999999999999999999999999998421
Q ss_pred CCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEE
Q 024132 123 KNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFN 202 (272)
Q Consensus 123 ~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~ 202 (272)
...+.++.||++|||||||||+|++||++ +| ++++|||||||||||+|+|.++ ...++++++
T Consensus 116 ------~~~s~~~~LRk~ldLyaNvRPvr~~pg~~--~~-----~~~iD~vIVREnteG~Y~g~~~-----~~~~gv~~~ 177 (372)
T PLN00118 116 ------GHRSLNLTLRKELGLYANVRPCYSLPGYK--TR-----YDDVDLVTIRENTEGEYSGLEH-----QVVRGVVES 177 (372)
T ss_pred ------cccCchHHHHHHcCCeeeecccccCCCcc--Cc-----ccCceEEEEEecCCCcccceee-----eccCCeEEE
Confidence 13456999999999999999999999986 34 3689999999999999999843 233568999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 203 TEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 203 ~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+++|||+++|||+|+||+||++| +|+||+|||+|||+ +++||+++|+|++++ +|++++++||++|||||
T Consensus 178 ~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv 250 (372)
T PLN00118 178 LKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMMLV 250 (372)
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHhc
Confidence 99999999999999999999998 47899999999999 789999999999994 89999999999999997
No 11
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=2.8e-63 Score=465.22 Aligned_cols=203 Identities=34% Similarity=0.517 Sum_probs=185.0
Q ss_pred EEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCCC
Q 024132 47 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEK 126 (272)
Q Consensus 47 IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~~ 126 (272)
|++|||||||||||+++++||++. +++|+|+++++|.++|+++|+++|++++++|+++|++||||+++|.+++
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~~--- 73 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKL----GLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANPG--- 73 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhc----CCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCCC---
Confidence 689999999999999999999965 5899999999999999999999999999999999999999999997532
Q ss_pred CCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeEee
Q 024132 127 HLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVY 206 (272)
Q Consensus 127 ~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~i 206 (272)
.+|.++.||++||||+|+||+|++||+++.+| .++|||||||||||+|+|.++. ..++++++++|
T Consensus 74 ---~~s~~~~LR~~ldlyanvRP~r~~~g~~~~~~------~~iD~vivREnteG~Y~g~~~~------~~~~a~~~~~~ 138 (322)
T TIGR02088 74 ---YKSVIVTLRKELDLYANVRPAKSLPGIPDLYP------NGKDIVIVRENTEGLYAGFEFG------FSDRAIAIRVI 138 (322)
T ss_pred ---ccChHHHHHHHcCCEEEEEEeeccCCCCCCCC------CCCCEEEEEeCcCCeeeccccc------cCcceEEEEEe
Confidence 34669999999999999999999999975333 2799999999999999998421 24589999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhcCc-ceeeeEeeecccceec
Q 024132 207 AAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAHVS-FTLNVHVLDCEKVILL 271 (272)
Q Consensus 207 Tr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~~~-v~~~~~~iD~~~m~lv 271 (272)
||+++|||+|+||+||++|++|||++||+|||+ +++||+++|+|+|++. |+++|++||++|||||
T Consensus 139 tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypv~~~~~~vDa~~~~lv 205 (322)
T TIGR02088 139 TREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIAKRYGVEYRDMYVDSAAMNLV 205 (322)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHHHhCCeeeeeeeHHHHHHHHh
Confidence 999999999999999999988899999999999 5689999999999942 9999999999999997
No 12
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=4.3e-63 Score=468.24 Aligned_cols=204 Identities=28% Similarity=0.373 Sum_probs=183.6
Q ss_pred CCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCC
Q 024132 41 PTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120 (272)
Q Consensus 41 ~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~ 120 (272)
++++++|+||||||||||||+++++||+++ +++|+|+++++|++ |.++|++++++|+++|++||||+++|.
T Consensus 27 ~~~~~~I~vipGDGIGpEV~~~a~~vl~a~----~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~ 97 (360)
T PLN00123 27 DGAPRAVTLIPGDGIGPLVTGAVEQVMEAM----HAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPV 97 (360)
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHHhC----CCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCC
Confidence 445689999999999999999999999977 48999999999985 689999999999999999999999986
Q ss_pred CCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceE
Q 024132 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIG 200 (272)
Q Consensus 121 ~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA 200 (272)
+.. ..+.++.||++|||||||||+|++||++ +| .+++|||||||||||+|+|.++ ...++++
T Consensus 98 ~~~------~~s~~l~LR~~ldLyaNvRP~k~~pg~~--~~-----~~~iD~viVREnteG~Y~g~~~-----~~~~g~~ 159 (360)
T PLN00123 98 GGG------VSSLNVQLRKELDLFASLVNCFNLPGLP--TR-----HENVDIVVIRENTEGEYSGLEH-----EVVPGVV 159 (360)
T ss_pred CcC------ccchHHHHHHHcCCEEEEEEeecCCCCC--Cc-----cCCCCEEEEEeCCCceecccee-----ecCCCce
Confidence 432 1245899999999999999999999986 34 3689999999999999999853 2345689
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc--CcceeeeEeeecccceec
Q 024132 201 FNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 201 ~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv 271 (272)
+++++|||+++|||+|+||+||++| +||||++||+|||+ +++||+++|+|+|+ ++|+++|++||++|||||
T Consensus 160 ~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~VDa~~~~Lv 234 (360)
T PLN00123 160 ESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIVDNCCMQLV 234 (360)
T ss_pred EEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeeeHHHHHHHHh
Confidence 9999999999999999999999997 57899999999999 78999999999999 489999999999999997
No 13
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=9.9e-64 Score=473.52 Aligned_cols=222 Identities=41% Similarity=0.650 Sum_probs=200.0
Q ss_pred EEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCC
Q 024132 46 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNE 125 (272)
Q Consensus 46 ~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~ 125 (272)
||+||||||||||||+++++||+++.++++++|+|+++++|.++++++|+++|++++++|+++|++||||+++|..+
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~--- 77 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPP--- 77 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSS---
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEccccccccc---
Confidence 79999999999999999999999999988999999999999999999999999999999999999999999998732
Q ss_pred CCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeEe
Q 024132 126 KHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEV 205 (272)
Q Consensus 126 ~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~ 205 (272)
..++.++++.||++||||+|+||+|++|++...||+|++..+++||+||||||||+|+|.++.......++++|+++++
T Consensus 78 -~~~~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~ 156 (348)
T PF00180_consen 78 -GIRSENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKV 156 (348)
T ss_dssp -SHSHHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEE
T ss_pred -ccccHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeeccCCCceEEEeec
Confidence 3344556799999999999999999997766779999877788999999999999999986543221134569999999
Q ss_pred ecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCccccchhhHHHHHHHHhc---CcceeeeEeeecccceec
Q 024132 206 YAAYEVDRIARVAFETARKR-HGKLCSVDKANVLEVMVYMLKQFSLVAH---VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 206 iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~~s~lf~ev~~eva~---~~v~~~~~~iD~~~m~lv 271 (272)
|||+++|||+|+||++|++| +|+||+|||+|+|+.+.||+++|+|+++ ++|++++++||+++||||
T Consensus 157 ~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv 226 (348)
T PF00180_consen 157 ITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTDLFREVFQEVAKQEYPDIEVEHMLVDAAAMQLV 226 (348)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHHHHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHHHHHHHHHHHHHhhcceeEeeeeechhhhheee
Confidence 99999999999999999999 8999999999999966699999999999 489999999999999997
No 14
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-62 Score=477.81 Aligned_cols=207 Identities=20% Similarity=0.325 Sum_probs=188.4
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcC-CCCCHHHHHHHHhcCeEEEeeccCCCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVG-VPLPEETLAAAKQSDAVLLGAIGGYKW 121 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G-~~lp~etl~~ik~~daiL~Gavg~p~~ 121 (272)
.+++|+||||||||||||+++++||+++ +++|+|+++++|.++|+++| +++|++++++|+++|++||||+++|.+
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~----~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~ 78 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAA----GAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQG 78 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhc----CCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCc
Confidence 4589999999999999999999999987 47899999999999999987 799999999999999999999999864
Q ss_pred CCCCCCCCCccchhhhhhccCceEEeEEeeec-CCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceE
Q 024132 122 DKNEKHLKPETGLLQIREGLKVFANLRPATVL-PQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIG 200 (272)
Q Consensus 122 ~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~-pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA 200 (272)
.+ ..|.++.||++|||||||||||++ ||++ +| ++++|||||||||||+|+|+++ ...++++
T Consensus 79 ~~------~~s~~~~LRk~ldLYaNvRP~r~~~pgv~--~~-----~~~iD~vIVRENtEG~Y~G~e~-----~~~~~~~ 140 (482)
T PRK09222 79 GG------YKSLNVTLRKTLGLYANVRPCVSYHPFVE--TK-----HPNLDVVIIRENEEDLYAGIEH-----RQTPDVY 140 (482)
T ss_pred cC------ccchHHHHHHHcCCeEEeeeEEecCCCCC--CC-----CCCcCEEEEEeccCCeecccee-----ecCCCee
Confidence 31 235589999999999999999999 9986 34 3589999999999999999843 3345789
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc--CcceeeeEeeecccceec
Q 024132 201 FNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 201 ~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv 271 (272)
+++++|||+++|||+||||+||++| +||||++||+|||+ +++||+++|+|+|+ ++|+++|++||++|||||
T Consensus 141 ~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv 215 (482)
T PRK09222 141 QCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYIVDIGAARLA 215 (482)
T ss_pred eEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeeeHHHHHHHHh
Confidence 9999999999999999999999998 47899999999999 78999999999999 489999999999999997
No 15
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=4.9e-62 Score=468.56 Aligned_cols=215 Identities=27% Similarity=0.351 Sum_probs=189.7
Q ss_pred EEEECCCCccHHHHHHHHHHHHHhhcc-c--CCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 47 ITLLPGDGIGPEVIAVAKNVLKLAGSL-E--GIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 47 IavIpGDGIGPEV~~aa~~VL~a~~~~-~--g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
|+||||||||||||+++++||+++.++ + +++|+|.++++|.++|+++|++||++++++|+++|++||||+++|..+
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~~- 104 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIGK- 104 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCc-
Confidence 999999999999999999999987653 4 379999999999999999999999999999999999999999998422
Q ss_pred CCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcc-----------
Q 024132 124 NEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGV----------- 192 (272)
Q Consensus 124 ~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~----------- 192 (272)
+ ..|.++.||++|||||||||+|++||++ ||+|+ .+++|||||||||||+|+|.++....
T Consensus 105 --~---~~s~~l~LRk~ldLyaNvRPvk~~pgl~--sp~~~--~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~ 175 (412)
T PRK06451 105 --G---WKSINVAIRLMLDLYANIRPVKYIPGIE--SPLKN--PEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLR 175 (412)
T ss_pred --C---CcChhHHHHHHcCCeEeeceeecCCCCC--CcccC--cCCccEEEEEeccCCeeeccccccccccccccccccc
Confidence 1 2345899999999999999999999996 78873 46899999999999999998632100
Q ss_pred c----ccCcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC------------
Q 024132 193 T----EHGEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV------------ 254 (272)
Q Consensus 193 ~----~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~------------ 254 (272)
. ...+++|+++++||+++++||+|+||+||++| +|+||+|||+|||+ ++++|+++|+|++++
T Consensus 176 ~~~~~~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~ 255 (412)
T PRK06451 176 KELGVEVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEV 255 (412)
T ss_pred cccccccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccch
Confidence 0 11246799999999999999999999999998 57899999999999 789999999999962
Q ss_pred -----------cceeeeEeeecccceec
Q 024132 255 -----------SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 -----------~v~~~~~~iD~~~m~lv 271 (272)
+|+++|++||++|||||
T Consensus 256 ~~~y~~~~~~~~I~~~~~~vDa~~~~Lv 283 (412)
T PRK06451 256 TKNYNGVPPSGKVIINDRIADNMFQQII 283 (412)
T ss_pred hhccccccccCceEEEeeeHHHHHHHHh
Confidence 38999999999999997
No 16
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-61 Score=465.64 Aligned_cols=218 Identities=22% Similarity=0.287 Sum_probs=190.6
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcc-c--CCeeEEEEEecchhhhhhcCC--CCCHHHHHHHHhcCeEEEeecc
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSL-E--GIEFAFQEMPMGGSALDLVGV--PLPEETLAAAKQSDAVLLGAIG 117 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~-~--g~~ie~~~~~~G~~~~~~~G~--~lp~etl~~ik~~daiL~Gavg 117 (272)
+++ |++|||||||||||+++++||+++.+. + +++|+|+++++|+++|+++|+ +||++++++|+++|++||||++
T Consensus 19 ~~~-I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~ 97 (409)
T PRK07006 19 NPI-IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLT 97 (409)
T ss_pred CcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECccc
Confidence 335 999999999999999999999987653 3 369999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccc----
Q 024132 118 GYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVT---- 193 (272)
Q Consensus 118 ~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~---- 193 (272)
+|... ..+|.++.||++||||||+||+|++||++ +|+|+ .+++|||||||||||+|+|.++.....
T Consensus 98 tp~~~------~~~s~~l~LR~~ldLyaNvRPvk~~pgl~--~plk~--~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~ 167 (409)
T PRK07006 98 TPVGG------GIRSLNVALRQELDLYVCLRPVRYFKGVP--SPVKR--PEDTDMVIFRENSEDIYAGIEWKAGSAEAKK 167 (409)
T ss_pred CCCCc------CccChHHHHHHHcCCEEEEEEEecCCCCC--CCCCC--CCCCCEEEEEeccCCeecccccccCCcccce
Confidence 98321 12355999999999999999999999996 78873 468999999999999999986321000
Q ss_pred ---------c-----cCcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc----
Q 024132 194 ---------E-----HGEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH---- 253 (272)
Q Consensus 194 ---------~-----~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~---- 253 (272)
. ..++.|+++++|||+++|||+|+||+||++| +|+||+|||+|||+ +++||++++.|+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~ 247 (409)
T PRK07006 168 VIKFLQEEMGVKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFG 247 (409)
T ss_pred eeeccccccCcccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhh
Confidence 0 1346789999999999999999999999998 57899999999999 78999998889998
Q ss_pred ------------------CcceeeeEeeecccceec
Q 024132 254 ------------------VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 254 ------------------~~v~~~~~~iD~~~m~lv 271 (272)
++|++++++||++|||||
T Consensus 248 ~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv 283 (409)
T PRK07006 248 DELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQIL 283 (409)
T ss_pred hhhhccccccccccccCCCCceeehHHHHHHHHHHh
Confidence 489999999999999997
No 17
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=8.9e-62 Score=471.48 Aligned_cols=204 Identities=22% Similarity=0.309 Sum_probs=185.4
Q ss_pred EEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcC-CCCCHHHHHHHHhcCeEEEeeccCCCCCCC
Q 024132 46 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVG-VPLPEETLAAAKQSDAVLLGAIGGYKWDKN 124 (272)
Q Consensus 46 ~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G-~~lp~etl~~ik~~daiL~Gavg~p~~~~~ 124 (272)
+|+||||||||||||+++++||+++ +++|+|+++++|+++|+++| +++|++++++|+++|++||||+++|.+.+
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~----~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~~- 76 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEA----EAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGGG- 76 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhc----CCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCccC-
Confidence 6999999999999999999999986 47999999999999999985 89999999999999999999999996532
Q ss_pred CCCCCCccchhhhhhccCceEEeEEeeec-CCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEe
Q 024132 125 EKHLKPETGLLQIREGLKVFANLRPATVL-PQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNT 203 (272)
Q Consensus 125 ~~~~~~~s~~l~LR~~ldLyanvRPvr~~-pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~ 203 (272)
..|.++.||++|||||||||||++ ||+++ .++++|||||||||||+|+|.++ ...+++++++
T Consensus 77 -----~~s~~~~LRk~ldLYANvRPv~~~~p~~~~-------~~~~vDiVIVRENtEGlY~G~e~-----~~~~~~~~~~ 139 (473)
T TIGR02924 77 -----HKSLNVTLRKTLGLYANIRPCVSYHPFIET-------KSPNLNIVIVRENEEDLYTGIEY-----RQTPDTYECT 139 (473)
T ss_pred -----cccHHHHHHHHcCCeEEEEEeeccCCCCCC-------ccCCcCEEEEEeccCceecCcee-----eccCChheEe
Confidence 235599999999999999999999 88752 23689999999999999999853 3334678999
Q ss_pred EeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 204 EVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 204 ~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
++|||+++|||+|+||+||++| +||||++||+|||+ +++||+++|+|+|++ +|+++|++||+++||||
T Consensus 140 kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~VDa~a~~Lv 211 (473)
T TIGR02924 140 KLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYIVDIGMARLA 211 (473)
T ss_pred EecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHHHHHHHHHHh
Confidence 9999999999999999999998 57899999999999 789999999999994 89999999999999997
No 18
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=3.3e-61 Score=453.38 Aligned_cols=206 Identities=28% Similarity=0.427 Sum_probs=184.8
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWD 122 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~ 122 (272)
++++|+||||||||||||+++++||+++ +++|+|+++++|++ +++|+++|++++++|+++|++||||+++|...
T Consensus 2 g~~~i~vlpGDGIGpEv~~~a~~vl~~~----~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~ 75 (333)
T TIGR00175 2 GKYTVTLIPGDGIGPEISGSVKKIFRAA----NVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGK 75 (333)
T ss_pred CcEEEEEECCCcccHHHHHHHHHHHHhC----CCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCcccc
Confidence 4589999999999999999999999977 48999999999996 67899999999999999999999999998422
Q ss_pred CCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEE
Q 024132 123 KNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFN 202 (272)
Q Consensus 123 ~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~ 202 (272)
+ . ..|.++.||++||||+|+||+|++||++ +|+ +++|||||||||||+|+|.++ ...++++++
T Consensus 76 ~--~---~~s~~~~lR~~ldlyanvRP~k~~pg~~--~~~-----~~iD~vivREnteG~Y~g~~~-----~~~~~~~~~ 138 (333)
T TIGR00175 76 G--G---HRSLNVALRKELDLYANVVHCKSLPGFK--TRH-----EDVDIVIIRENTEGEYSGLEH-----ESVPGVVES 138 (333)
T ss_pred c--c---ccchhHHHHHHcCCEEEeEEecCCCCCC--CCC-----CCcCEEEEEEeCCCcccceeE-----eccCCeEEE
Confidence 1 1 2345999999999999999999999986 343 589999999999999999842 234568999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhCC-CcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 203 TEVYAAYEVDRIARVAFETARKRH-GKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 203 ~~~iTr~~~eRIar~AFe~A~~r~-kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+++|||+++|||+|+||+||++|+ ||||++||+|||+ +++||+++|+|+|++ +|+++|++||+++||||
T Consensus 139 ~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv 211 (333)
T TIGR00175 139 LKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLV 211 (333)
T ss_pred EEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHh
Confidence 999999999999999999999985 6799999999999 789999999999994 89999999999999997
No 19
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=4.9e-61 Score=463.20 Aligned_cols=215 Identities=25% Similarity=0.285 Sum_probs=189.8
Q ss_pred EEEECCCCccHHHHHHHHHHHHHhhcc-c--CCeeEEEEEecchhhhhhcC--CCCCHHHHHHHHhcCeEEEeeccCCCC
Q 024132 47 ITLLPGDGIGPEVIAVAKNVLKLAGSL-E--GIEFAFQEMPMGGSALDLVG--VPLPEETLAAAKQSDAVLLGAIGGYKW 121 (272)
Q Consensus 47 IavIpGDGIGPEV~~aa~~VL~a~~~~-~--g~~ie~~~~~~G~~~~~~~G--~~lp~etl~~ik~~daiL~Gavg~p~~ 121 (272)
|+||||||||||||+++++||+++.++ + +++|+|+++++|+++|+++| ++||++++++|+++|++||||+++|..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999999998764 3 36999999999999999999 999999999999999999999999832
Q ss_pred CCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcc---c-----
Q 024132 122 DKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGV---T----- 193 (272)
Q Consensus 122 ~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~---~----- 193 (272)
. + ..|.++.||++||||||+||+|++||++ ||+|+ .+++|||||||||||+|+|.++.... +
T Consensus 109 ~---~---~~s~~l~LR~~ldLyaNvRP~k~~pgl~--s~~~~--~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~ 178 (416)
T TIGR00183 109 G---G---IRSLNVALRQELDLYVCLRPVRYYKGVP--SPVKH--PEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRF 178 (416)
T ss_pred c---c---ccCcHHHHHHHcCCEEEEeEeecCCCCC--CcCCC--CCCCCEEEEEeCCCCcccccccccCcccceeeecc
Confidence 1 1 1345999999999999999999999996 78873 56899999999999999998622110 0
Q ss_pred -----cc-----CcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC-------
Q 024132 194 -----EH-----GEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV------- 254 (272)
Q Consensus 194 -----~~-----~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~------- 254 (272)
+. .+++|+++++||+++++||+|+||+||++| +++||+|||+|||+ +++||+++|.|+|++
T Consensus 179 ~~~~~g~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~ 258 (416)
T TIGR00183 179 LQNELGVKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECI 258 (416)
T ss_pred cccccCccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhh
Confidence 11 356899999999999999999999999998 57899999999999 779999988899993
Q ss_pred ---------------cceeeeEeeecccceec
Q 024132 255 ---------------SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 ---------------~v~~~~~~iD~~~m~lv 271 (272)
+|+++|++||+++||||
T Consensus 259 ~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv 290 (416)
T TIGR00183 259 TWGLWDKYKNPNPGKEIVIKDRIADAFLQQIL 290 (416)
T ss_pred hccccccccCcccCCceeEeehhHHHHHHHHh
Confidence 79999999999999997
No 20
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.4e-60 Score=459.49 Aligned_cols=198 Identities=23% Similarity=0.258 Sum_probs=173.1
Q ss_pred EEEEECCCCccHHHHHHHHHHHHHhhc-cc--CCeeEEEEEecchhhhhhcCC--CCCHHHHHHHHhcCeEEEeeccCCC
Q 024132 46 SITLLPGDGIGPEVIAVAKNVLKLAGS-LE--GIEFAFQEMPMGGSALDLVGV--PLPEETLAAAKQSDAVLLGAIGGYK 120 (272)
Q Consensus 46 ~IavIpGDGIGPEV~~aa~~VL~a~~~-~~--g~~ie~~~~~~G~~~~~~~G~--~lp~etl~~ik~~daiL~Gavg~p~ 120 (272)
.|++|||||||||||+++++||+++.. .+ +++|+|.++++|+++|+++|+ +||++|+++|+++|++||||+++|.
T Consensus 30 ~I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~ 109 (474)
T PRK07362 30 IIPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPI 109 (474)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCC
Confidence 399999999999999999999998753 34 369999999999999999996 8999999999999999999999985
Q ss_pred CCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcc--------
Q 024132 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGV-------- 192 (272)
Q Consensus 121 ~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~-------- 192 (272)
+.+ ..|.++.||++||||+||||||+|||++ ||+|. .+++|||||||||||+|+|+++....
T Consensus 110 ~~g------~~s~~l~LRk~ldLyaNvRPvr~~pgl~--sp~k~--~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~ 179 (474)
T PRK07362 110 GGG------IRSLNVALRQIFDLYSCVRPCRYYAGTP--SPHKN--PEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIK 179 (474)
T ss_pred CcC------ccchHHHHHHHcCCceeeeEeeccCCCC--CcccC--CCCCCEEEEEECCCceecccccccccccchhccc
Confidence 432 1255999999999999999999999996 89883 57899999999999999999642110
Q ss_pred ---------------cccCcceEEEeEeecHHHHHHHHHHHHHHHHhC---CCcEEEEeCCcccc-chhhHHHHHHHHhc
Q 024132 193 ---------------TEHGEEIGFNTEVYAAYEVDRIARVAFETARKR---HGKLCSVDKANVLE-VMVYMLKQFSLVAH 253 (272)
Q Consensus 193 ---------------~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r---~kkVT~vhKaNVl~-~s~lf~ev~~eva~ 253 (272)
.+...++|+++++|||++++||+|+||+||++| +|+||+|||+|||+ ++++|++++.|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~ 259 (474)
T PRK07362 180 HLNEEVIPASPELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELAT 259 (474)
T ss_pred ccccccccccccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHH
Confidence 112345889999999999999999999999998 47899999999999 78999998889986
No 21
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-59 Score=430.02 Aligned_cols=214 Identities=26% Similarity=0.364 Sum_probs=192.0
Q ss_pred ccCCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 36 AATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 36 ~~~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
.++-++.+++++++||||||||||++++.+|++++. ++|||+.++.+...-..++..+|++++++++++.+.||||
T Consensus 27 ~~~~~~~~~~~vtLIpGDGIGpEi~~av~kvf~aak----~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp 102 (365)
T KOG0785|consen 27 RAFNSATKTITVTLIPGDGIGPEISPAVKKVFEAAK----VPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGP 102 (365)
T ss_pred ccccCCCCceEEEEecCCCCCHHHHHHHHHHHHhcC----CCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCc
Confidence 344445677999999999999999999999999884 8999999998765333367799999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccccc
Q 024132 116 IGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH 195 (272)
Q Consensus 116 vg~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~ 195 (272)
+.+|.+.. | .|.|++|||+|+||||||||++++|.. +.++++|+|+|||||||+|+|+ ||+.
T Consensus 103 ~~tPi~kg---h---~S~nl~LRK~f~LyANVRPc~SieG~K-------t~Y~~vD~V~IRENTEgeYsgi-----Eh~v 164 (365)
T KOG0785|consen 103 VATPIGKG---H---RSLNLALRKEFGLYANVRPCKSIEGYK-------TPYDDVDLVIIRENTEGEYSGI-----EHQV 164 (365)
T ss_pred ccCccccc---c---ccHHHHHHHHhchhccceecccccCCc-------CCCCCceEEEEecCCccccccc-----eeec
Confidence 99998753 2 367999999999999999999999986 3467999999999999999999 4667
Q ss_pred CcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc--CcceeeeEeeecccceec
Q 024132 196 GEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 196 ~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv 271 (272)
.++|+.++++||+.+++||++|||+||+++ |++||++||+|||+ ++|||+|+|+|+++ +||.||++++|++|+.||
T Consensus 165 vpGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~~l~lv 244 (365)
T KOG0785|consen 165 VPGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTCCLKLV 244 (365)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHHHHHHh
Confidence 788999999999999999999999999987 79999999999999 67999999999998 499999999999999876
No 22
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-56 Score=413.31 Aligned_cols=210 Identities=28% Similarity=0.392 Sum_probs=190.2
Q ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCC
Q 024132 40 PPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGY 119 (272)
Q Consensus 40 ~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p 119 (272)
.|++++++++|||||||||++.+...|++++. +|+||+++++++ -.+.+...++|.+++++++.+.|+|.+.+|
T Consensus 38 kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~----~PV~fE~i~v~~--~~~~~~~~~~e~v~Si~rNkValkG~i~t~ 111 (375)
T KOG0784|consen 38 KYGGRHTVTLIPGDGIGPELTNAVREVFSAAH----APVEFEEIEVSG--SNKESSEDLDEAVESIKRNKVALKGNIETP 111 (375)
T ss_pred ccCCcceEEEeCCCCcCHHHHHHHHHHHHhcC----CCeeEEEEEccC--CccccchhHHHHHHHHHhcceeEeecccCC
Confidence 47789999999999999999999999999995 899999999987 223444568999999999999999999998
Q ss_pred CCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcce
Q 024132 120 KWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEI 199 (272)
Q Consensus 120 ~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~v 199 (272)
..++ + ..|.+++||++||||||+-.|+++||++ ++++++|||||||||||+|+|. ||+..++|
T Consensus 112 ~~~g---~--~~s~n~~LR~~LDLyanvv~~~slpG~~-------tRh~~vDiviIRENTEGEYs~L-----EHE~VpGV 174 (375)
T KOG0784|consen 112 DLPG---G--AKSLNVKLRKELDLYANVVHCKSLPGVK-------TRHENVDIVIIRENTEGEYSGL-----EHESVPGV 174 (375)
T ss_pred CCcc---c--hhhhHHHHHHhhhhhhheeeeeccCCcc-------cccCCccEEEEecCCccccccc-----ccccCcch
Confidence 4321 1 2467999999999999999999999996 5788999999999999999999 57788999
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc--CcceeeeEeeecccceecC
Q 024132 200 GFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILLV 272 (272)
Q Consensus 200 A~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv~ 272 (272)
..+++++|++.+|||+|||||||.+. |||||+|||+|+|| .+|||+++|+|||+ ++|+++.|+||++|||||.
T Consensus 175 VEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miVDN~~MQlvs 251 (375)
T KOG0784|consen 175 VESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIVDNACMQLVS 251 (375)
T ss_pred hheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhHHHhHHHhhc
Confidence 99999999999999999999999986 79999999999999 67999999999997 6899999999999999983
No 23
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-55 Score=396.06 Aligned_cols=224 Identities=72% Similarity=1.113 Sum_probs=212.9
Q ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCC
Q 024132 42 TKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKW 121 (272)
Q Consensus 42 ~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~ 121 (272)
+++|+|+++|||||||||+..+.+||++++...|++|+|.+.++|+.+.+..|.++|+||+++.|++|++|+|++|+|+|
T Consensus 2 ~~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw 81 (363)
T KOG0786|consen 2 KKRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKW 81 (363)
T ss_pred CCcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCccc
Confidence 46799999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEE
Q 024132 122 DKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGF 201 (272)
Q Consensus 122 ~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~ 201 (272)
+. .+.+|+.+++.||+.|.+|||+||+...|.+.+.||||++..+++||+||||.|+|+|+|.++ ++.++++++
T Consensus 82 ~~--~~lrpe~gll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r----~eng~gva~ 155 (363)
T KOG0786|consen 82 DK--NHLRPEMGLLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPR----NENGEGVAF 155 (363)
T ss_pred Cc--CCcChhhhHHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcc----cCCCcceee
Confidence 85 478999999999999999999999999999999999999999999999999999999999864 456788999
Q ss_pred EeEeecHHHHHHHHHHHHHHHHhCC--CcEEEEeCCccccchhhHHHHHHHHhc---CcceeeeEeeecccceec
Q 024132 202 NTEVYAAYEVDRIARVAFETARKRH--GKLCSVDKANVLEVMVYMLKQFSLVAH---VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 202 ~~~~iTr~~~eRIar~AFe~A~~r~--kkVT~vhKaNVl~~s~lf~ev~~eva~---~~v~~~~~~iD~~~m~lv 271 (272)
++.+|+-+++.||+|.||++|++|+ .++|++||+|||.+|.|||+.+.+.-+ +++++.||+||+++||||
T Consensus 156 dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLaaSrLWRKtV~~~~k~EyP~l~l~hqliDsAAM~Lv 230 (363)
T KOG0786|consen 156 DTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLAASRLWRKTVTKALKSEYPDLELSHQLIDSAAMQLV 230 (363)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHHHHHHHHHHHHHHHHhhCCCcchhhhhhhHHHHHHh
Confidence 9999999999999999999999997 899999999999999999999997766 479999999999999997
No 24
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.5e-53 Score=403.99 Aligned_cols=212 Identities=15% Similarity=0.061 Sum_probs=178.0
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+.+|++||||||||||+++++.+|.+.. ++|+|+++++|.++|+++|+++|++++++|+++|++||||+++|....
T Consensus 7 ~~~~~~~~gd~i~~~~~~~~~~~~~~~~----~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~~ 82 (402)
T PRK08299 7 KNPVVELDGDEMTRIIWKFIKDKLILPY----LDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEAR 82 (402)
T ss_pred CCceEEecCCCchHHHHHHHHHHHhccC----CCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCccc
Confidence 3589999999999999999999999884 899999999999999999999999999999999999999999996321
Q ss_pred C--CCCC-CCccchhhhhhccCceEEeEEe--ee----cCCCccCCccccccCCCccEEEEeecCCccccCCCCCCc---
Q 024132 124 N--EKHL-KPETGLLQIREGLKVFANLRPA--TV----LPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYG--- 191 (272)
Q Consensus 124 ~--~~~~-~~~s~~l~LR~~ldLyanvRPv--r~----~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~--- 191 (272)
. ++.. ...|.|+.||++||||+|+||+ ++ +||++ -+|+||||||||+|+|.+....
T Consensus 83 ~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~------------~~ivivREnTEg~Y~gi~~~~~r~~ 150 (402)
T PRK08299 83 VKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWT------------KPIVIGRHAYGDQYRATDFKVPGKG 150 (402)
T ss_pred ccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCC------------CCEEEEecccCCcccceeEEeccCc
Confidence 1 0100 1236699999999999999998 66 66653 2599999999999999854210
Q ss_pred --------ccccC--------cceEEEeEe-ecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhc
Q 024132 192 --------VTEHG--------EEIGFNTEV-YAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAH 253 (272)
Q Consensus 192 --------~~~~~--------~~vA~~~~~-iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~ 253 (272)
.++.+ .+.++++++ |||++||||+|+||+||++|+++||+|||+|||+ +++||+++|+|||+
T Consensus 151 ~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~ 230 (402)
T PRK08299 151 KLTLVFTGEDGEPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYE 230 (402)
T ss_pred cceeeeecCCCccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHH
Confidence 00111 122445555 9999999999999999999988899999999999 68999999999995
Q ss_pred ---C------cceeeeEeeecccceec
Q 024132 254 ---V------SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 254 ---~------~v~~~~~~iD~~~m~lv 271 (272)
+ +|++++++||++|||||
T Consensus 231 ~~yp~~~~~~~i~~~~~~vDa~~~~lv 257 (402)
T PRK08299 231 AEFKEKFEAAGITYEHRLIDDMVASAL 257 (402)
T ss_pred HhCccccccCcEEEEEeeHHHHHHHHH
Confidence 3 49999999999999997
No 25
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=4.9e-51 Score=391.42 Aligned_cols=216 Identities=14% Similarity=0.052 Sum_probs=180.8
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCC
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKN 124 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~ 124 (272)
..+++|+|||||+|++++.+++|.+. +++|+|+++++|.++|+++|+++|++++++|+++|++||||+++|...+.
T Consensus 10 ~p~~~~~Gd~~~~~~~~~~~~~~~~~----~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~~ 85 (410)
T PLN00103 10 NPIVEMDGDEMTRVIWKSIKDKLIFP----FLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (410)
T ss_pred CCeEEecCCcchHHHHHHHHHHHhcC----CCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCcccccc
Confidence 46999999999999999999999988 48999999999999999999999999999999999999999999842110
Q ss_pred --CCC-CCCccchhhhhhccCceEEeEE--eeecC----CCccCCcccc----------------ccCCCccEEEEeecC
Q 024132 125 --EKH-LKPETGLLQIREGLKVFANLRP--ATVLP----QLVDSSTLKK----------------EVAEGVDLMVVRELT 179 (272)
Q Consensus 125 --~~~-~~~~s~~l~LR~~ldLyanvRP--vr~~p----g~~~~spLk~----------------~~~~~iDivIVREnT 179 (272)
++. ....|+|+.||++||||+|+|| +|++| |++ +|+.. ...+++|+|||||||
T Consensus 86 ~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~--~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENT 163 (410)
T PLN00103 86 KEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWT--KPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGK 163 (410)
T ss_pred cccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCC--CceeecccccccccccceeccCCCCceEEEEEecCC
Confidence 010 1124569999999999999999 99998 775 46511 012679999999999
Q ss_pred CccccCCCCCCcccccCcceEEEeEee-cHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhc----
Q 024132 180 GGIYFGKPRGYGVTEHGEEIGFNTEVY-AAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAH---- 253 (272)
Q Consensus 180 EG~Y~g~~~~~~~~~~~~~vA~~~~~i-Tr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~---- 253 (272)
||+| +. .. ....++.++++++| |+++++||+|+||++|++|+++||++||+|||+ ++++|+++|+|+++
T Consensus 164 Eg~y-e~--~~--~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~ 238 (410)
T PLN00103 164 DEKT-EL--EV--YNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWK 238 (410)
T ss_pred Ccee-EE--Ee--eccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhhHHHHHHHHHHHHHhhhh
Confidence 9999 22 10 00011346678997 999999999999999999988899999999999 77999999999995
Q ss_pred ---C--cceeeeEeeecccceec
Q 024132 254 ---V--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 254 ---~--~v~~~~~~iD~~~m~lv 271 (272)
+ +|++++++||++|||||
T Consensus 239 ~eyp~~~I~~~~~lVDa~a~~lv 261 (410)
T PLN00103 239 SKFEAAGIWYEHRLIDDMVAYAL 261 (410)
T ss_pred hhCCCCceEEEEeEHHHHHHHHh
Confidence 3 69999999999999997
No 26
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=5.4e-46 Score=356.25 Aligned_cols=220 Identities=14% Similarity=0.043 Sum_probs=177.2
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCC
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKN 124 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~ 124 (272)
..+..+-||-.-.- .-..+++.+...| ++|+|.++++|.++++++|+++|++++++|+++|++||||+++|...+.
T Consensus 7 ~p~v~~~g~em~~~---~~~~~~~~~~~~~-~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~ 82 (409)
T TIGR00127 7 NPVVEMDGDEMTRI---IWELIKDKLILPY-VELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEARV 82 (409)
T ss_pred CCeEEecCcHHHHH---HHHHHHHhhccCC-cCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccc
Confidence 45778888733221 1225556665554 8999999999999999999999999999999999999999999874311
Q ss_pred CCC---CCCccchhhhhhccCceEEeEE------eeecCCCccCCcccc------ccCCCccEEEEeecC-CccccCCCC
Q 024132 125 EKH---LKPETGLLQIREGLKVFANLRP------ATVLPQLVDSSTLKK------EVAEGVDLMVVRELT-GGIYFGKPR 188 (272)
Q Consensus 125 ~~~---~~~~s~~l~LR~~ldLyanvRP------vr~~pg~~~~spLk~------~~~~~iDivIVREnT-EG~Y~g~~~ 188 (272)
... ....|+|++||+.||||||+|| ++++||+. +|+.- ..++++|++|+|||| ||+|+|.++
T Consensus 83 ~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~--~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 83 EEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWE--KPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCC--CCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 111 1124679999999999999999 78888875 45421 235789999999999 999999975
Q ss_pred CCc------ccccCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHh-c--C----
Q 024132 189 GYG------VTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVA-H--V---- 254 (272)
Q Consensus 189 ~~~------~~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva-~--~---- 254 (272)
+.. ....+++++.++ +||+++||||+|+||+||++|+++||++||+|||+ ++++|+++|+|++ + +
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~-~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~ 239 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAM-YNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFE 239 (409)
T ss_pred CcccceeeeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCccccc
Confidence 320 001124677776 79999999999999999999988999999999999 7799999999997 4 4
Q ss_pred --cceeeeEeeecccceec
Q 024132 255 --SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 --~v~~~~~~iD~~~m~lv 271 (272)
+|++++++||++|||||
T Consensus 240 ~~~I~~~~~lVDa~~m~lv 258 (409)
T TIGR00127 240 ALGIWYEHRLIDDMVAQAL 258 (409)
T ss_pred CCCEEEEEeeHHHHHHHHh
Confidence 79999999999999997
No 27
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.7e-45 Score=345.85 Aligned_cols=219 Identities=24% Similarity=0.262 Sum_probs=194.7
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcc-c--CCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSL-E--GIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGY 119 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~-~--g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p 119 (272)
.+..|.+|.||||||||++++.+|++++.++ | ..+|+|.++++|.++++++|+.||+||++.++++.+.+|||++||
T Consensus 17 ~~piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TP 96 (407)
T COG0538 17 DKPIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTP 96 (407)
T ss_pred CCcccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCc
Confidence 3578999999999999999999999998865 4 389999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcc-------
Q 024132 120 KWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGV------- 192 (272)
Q Consensus 120 ~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~------- 192 (272)
-... -.|+|.+||+.||||+|+|||+.+||+| ||.| +++.+||||+|||||+.|.|+++....
T Consensus 97 vg~g------~rSlNvtlRq~Ldly~~~rPv~y~~gvP--spvk--~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~ 166 (407)
T COG0538 97 VGKG------WRSLNVTLRQILDLYVFRRPVRYFPGVP--SPVK--RPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLI 166 (407)
T ss_pred cccc------ccCchHHHHHHcCceEeeeeEEecCCCC--CCCC--CcccCCeEEEeccccchhheeeeccCCcchhhhh
Confidence 5432 2477999999999999999999999997 7876 357999999999999999998743210
Q ss_pred ----c-------ccCcceEEEeEeecHHHHHHHHHHHHHHHHhCC-CcEEEEeCCcccc-chhhHHHHHHHHhcCc----
Q 024132 193 ----T-------EHGEEIGFNTEVYAAYEVDRIARVAFETARKRH-GKLCSVDKANVLE-VMVYMLKQFSLVAHVS---- 255 (272)
Q Consensus 193 ----~-------~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~-kkVT~vhKaNVl~-~s~lf~ev~~eva~~~---- 255 (272)
. ..+++.++.++.|++++|.|++|.||+||.+++ +.||++||.|+|| +.|-|+++++|||+++
T Consensus 167 ~fl~~e~~~~~i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~ 246 (407)
T COG0538 167 FFLEDEMGVKKIRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGD 246 (407)
T ss_pred hhhhcccccceEecCCCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccc
Confidence 1 124578899999999999999999999999985 8999999999999 6799999999999864
Q ss_pred -----------------ceeeeEeeecccceec
Q 024132 256 -----------------FTLNVHVLDCEKVILL 271 (272)
Q Consensus 256 -----------------v~~~~~~iD~~~m~lv 271 (272)
|.++|+++|++.+|++
T Consensus 247 ~~~~~~~~~~~~~~~gkI~~~driaD~mlqQil 279 (407)
T COG0538 247 EVVTGKEKFELKGPKGKIVYKDRIADDMLQQIL 279 (407)
T ss_pred cccccchhhhccCcCceEEEehhhHHHHHHHHh
Confidence 7899999999998876
No 28
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-44 Score=347.25 Aligned_cols=221 Identities=12% Similarity=0.033 Sum_probs=177.0
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
...+..+-||-.-.- .-..+++.+...| ++|+|+++++|.++++++|+.+|++++++|+++|++||||+++|..+.
T Consensus 9 ~~~~v~~~~~em~~~---~~~~~~~~~~~~~-~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~~ 84 (413)
T PTZ00435 9 KNPVVELDGDEMTRI---IWKMIKEKLILPY-LDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEAR 84 (413)
T ss_pred cCCeEEecccHHHHH---HHHHHHHhhccCC-CCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCcccc
Confidence 346888888833221 2235666766666 899999999999999999999999999999999999999999987431
Q ss_pred CCCC---CCCccchhhhhhccCceEEeEEe------eecCCCccCCcccc------ccCCCccEEEEeecC-CccccCCC
Q 024132 124 NEKH---LKPETGLLQIREGLKVFANLRPA------TVLPQLVDSSTLKK------EVAEGVDLMVVRELT-GGIYFGKP 187 (272)
Q Consensus 124 ~~~~---~~~~s~~l~LR~~ldLyanvRPv------r~~pg~~~~spLk~------~~~~~iDivIVREnT-EG~Y~g~~ 187 (272)
..+. ....|+|++||+.||||||+||+ +++||++ +|+.. ..++++|++|+|||| ||+|++..
T Consensus 85 ~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~--~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~ 162 (413)
T PTZ00435 85 VKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWK--KPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPAD 162 (413)
T ss_pred ccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCC--CCeeeeccccCCCcCceEEEEecCCEEEEEEecCC
Confidence 1000 01246799999999999999998 5566763 45432 136889999999999 99999983
Q ss_pred CCCcc-----cccCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhc---C----
Q 024132 188 RGYGV-----TEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAH---V---- 254 (272)
Q Consensus 188 ~~~~~-----~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~---~---- 254 (272)
++... ....++++.++ +|||++||||+|+||+||++|+++||+|||+|||+ +++||+++|+|+|+ +
T Consensus 163 g~~~~~~~~~~~~~~~v~~~~-~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~ 241 (413)
T PTZ00435 163 GSEPQRVDVFDFKGGGVAMGM-YNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFE 241 (413)
T ss_pred CCcceeeeeeccCCCCeeEEE-EeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccc
Confidence 22100 01235666665 99999999999999999999988999999999999 68999999999995 3
Q ss_pred --cceeeeEeeecccceec
Q 024132 255 --SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 --~v~~~~~~iD~~~m~lv 271 (272)
+|++++++||++|||||
T Consensus 242 ~~~I~~~~~lVDa~~m~lv 260 (413)
T PTZ00435 242 KAGLWYEHRLIDDMVAQAI 260 (413)
T ss_pred cCCEEEEEeeHHHHHHHHh
Confidence 79999999999999997
No 29
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=4.2e-44 Score=347.72 Aligned_cols=235 Identities=14% Similarity=0.095 Sum_probs=188.6
Q ss_pred cCCccccccccccCCCCCC---ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHH
Q 024132 25 FLKPARIRCAAAATAPPTK---RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEET 101 (272)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~---~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~et 101 (272)
|..-+.++|-+.... +.+ ...|+.|+|||||+||++..+.+|... +++++|+++++|.++++++|+.+|+++
T Consensus 56 ~~~~~~~~~~~~~~~-~~ki~~~~piv~~~GDem~r~i~~~i~~~li~p----~~di~~~~~dlG~e~rd~Tgd~v~~da 130 (483)
T PLN03065 56 FHRASSVRCFASAAA-ADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFP----YLDLDIKYFDLGILNRDATDDKVTVES 130 (483)
T ss_pred cccccchhhhcchhh-hccccccCCeEEecCCcchHHHHHHHHHHHhcC----CCCceEEEEeCcHHHHHhhCCcCCHHH
Confidence 445556666544321 222 457999999999999999999999877 489999999999999999999999999
Q ss_pred HHHHHhcCeEEEeeccCCCCCCCC--CC-CCCccchhhhhhccCceEEeEEe------eecCCCccCCccc------ccc
Q 024132 102 LAAAKQSDAVLLGAIGGYKWDKNE--KH-LKPETGLLQIREGLKVFANLRPA------TVLPQLVDSSTLK------KEV 166 (272)
Q Consensus 102 l~~ik~~daiL~Gavg~p~~~~~~--~~-~~~~s~~l~LR~~ldLyanvRPv------r~~pg~~~~spLk------~~~ 166 (272)
+++|+++|++||||+++|...... .. ..-.|+|++||+.||||+|+||| +++||.. .|+- +..
T Consensus 131 ~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~--~pI~i~Rha~gd~ 208 (483)
T PLN03065 131 AEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWK--KPICIGRHAFGDQ 208 (483)
T ss_pred HHHHHHcCEEEECcccCCccccccccccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCC--CCeEEeecccCCC
Confidence 999999999999999999753211 00 11147799999999999999999 7777764 4532 112
Q ss_pred CCCccEEEE----------eecCCccccCCCCCCcccccCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Q 024132 167 AEGVDLMVV----------RELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKAN 236 (272)
Q Consensus 167 ~~~iDivIV----------REnTEG~Y~g~~~~~~~~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaN 236 (272)
++++|++|+ |||||| +.++... ...+++++.++ ++|+++++||+|+||+||++|+++||++||+|
T Consensus 209 Y~~iD~vi~~~g~~~~~~~rEnte~---~~e~~v~-~f~~~gva~~~-~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaN 283 (483)
T PLN03065 209 YRATDTVIKGPGKLKMVFVPEDGNA---PVELDVY-DFKGPGVALAM-YNVDESIRAFAESSMAMALQKKWPLYLSTKNT 283 (483)
T ss_pred cCceEEEEecCCeeEEEeecCCCCC---cceeEee-ccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 567888888 888886 3322111 11345788885 89999999999999999999988999999999
Q ss_pred ccc-chhhHHHHHHHHhc-------C--cceeeeEeeecccceec
Q 024132 237 VLE-VMVYMLKQFSLVAH-------V--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 237 Vl~-~s~lf~ev~~eva~-------~--~v~~~~~~iD~~~m~lv 271 (272)
||+ ++++|+++|+|+++ + +|+|+|++||++|||||
T Consensus 284 ILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lv 328 (483)
T PLN03065 284 ILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAV 328 (483)
T ss_pred cccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHH
Confidence 999 67999999999994 2 59999999999999997
No 30
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=99.87 E-value=2.1e-21 Score=185.32 Aligned_cols=191 Identities=12% Similarity=0.017 Sum_probs=143.7
Q ss_pred HHhhcccCCeeE-EEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCCC---CCCCccchhhhhhccCc
Q 024132 68 KLAGSLEGIEFA-FQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEK---HLKPETGLLQIREGLKV 143 (272)
Q Consensus 68 ~a~~~~~g~~ie-~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~~---~~~~~s~~l~LR~~ldL 143 (272)
+.+...| ++++ |.++|+|.++.++|.+.+.-++.++++++.+.+|+|+-||....+.. ..--.|+|.+||+.||-
T Consensus 19 ~~li~p~-~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk~~w~sPNgtiR~~l~G 97 (393)
T PLN00096 19 AKWIEPH-VDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLKKAWGSPNGAMRRGWNG 97 (393)
T ss_pred Hhhccce-eccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchhhhcCCCcHHHHhhcCC
Confidence 3344444 7785 89999999999999999999999999999999999999986432111 01124779999999999
Q ss_pred -eEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCC-----------------c-c---cc-c-Ccce
Q 024132 144 -FANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGY-----------------G-V---TE-H-GEEI 199 (272)
Q Consensus 144 -yanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~-----------------~-~---~~-~-~~~v 199 (272)
-+.-.|+. .++++ | -..--++|-|..-+|.|-. +... . + +. . ++++
T Consensus 98 ~tvfR~pi~-~~~i~---~-----~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~~~~f~~~~gv 167 (393)
T PLN00096 98 ITISRDTIH-IDGVE---L-----GYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVDDRTITDDLNA 167 (393)
T ss_pred ceEeeCCEe-cCCCC---C-----CccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEEEEecCCCCeE
Confidence 55555654 34442 1 1345689999999998865 2100 0 0 00 1 2233
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhc-C-------------cceeeeEeee
Q 024132 200 GFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAH-V-------------SFTLNVHVLD 264 (272)
Q Consensus 200 A~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~-~-------------~v~~~~~~iD 264 (272)
......|.+.|+||+|+||+||++|+++||++||+|||+ +++||+ +|+|+++ + +|+++|++||
T Consensus 168 -~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~V~~e~~lID 245 (393)
T PLN00096 168 -VVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSGDELVHLLSD 245 (393)
T ss_pred -EEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCceEEEeeeHH
Confidence 234678999999999999999999988899999999999 678998 8888872 2 3689999999
Q ss_pred cccceec
Q 024132 265 CEKVILL 271 (272)
Q Consensus 265 ~~~m~lv 271 (272)
+++||||
T Consensus 246 a~~~qlV 252 (393)
T PLN00096 246 AATMKLV 252 (393)
T ss_pred HHHHHHH
Confidence 9999997
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=99.20 E-value=1.7e-10 Score=107.38 Aligned_cols=189 Identities=13% Similarity=0.049 Sum_probs=145.3
Q ss_pred CeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCCCC-C-CC-ccchhhhhhccCceEEeEEeee
Q 024132 76 IEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKH-L-KP-ETGLLQIREGLKVFANLRPATV 152 (272)
Q Consensus 76 ~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~~~-~-~~-~s~~l~LR~~ldLyanvRPvr~ 152 (272)
+++++.++|+|-+..+++.+.+.-++.++++++++.+++++-+|....+... . .. .|+|.+||.-|+-.+.-.|+-
T Consensus 46 ldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi- 124 (422)
T KOG1526|consen 46 LDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEARVEEFNLKKMWKSPNGTIRNILGGTVFREPII- 124 (422)
T ss_pred eeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHHHHHHhhhHHHhcCCCcchhhhcCceeecccee-
Confidence 6889999999999999999999999999999999999999999864432111 0 11 367999999999999888864
Q ss_pred cCCCccCCccccccCCCccEEEEeecCCccccCCC-----CCC--------ccc---------ccCcceEEEeEeecHHH
Q 024132 153 LPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKP-----RGY--------GVT---------EHGEEIGFNTEVYAAYE 210 (272)
Q Consensus 153 ~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~-----~~~--------~~~---------~~~~~vA~~~~~iTr~~ 210 (272)
.+.+|.+.| ...-.|+|=|..-++.|-... .|. +.. ..++++ .....+|.+.
T Consensus 125 ~kniPrlVp-----gW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg~~~~~~~V~~f~~~G~-~~~m~~~dds 198 (422)
T KOG1526|consen 125 CKNIPRLVP-----GWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDGTQKVTLKVYDFKGSGV-AAMMYNTDDS 198 (422)
T ss_pred cCCcccccC-----CCccceEEeeccccccceeeeEeecCCCeEEEEEecCCCCcceeEEEEecCCCce-eEEEeeccch
Confidence 233332233 245678888888888885431 000 000 012333 3456788888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhcC---------cceeeeEeeecccceec
Q 024132 211 VDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAHV---------SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 211 ~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~~---------~v~~~~~~iD~~~m~lv 271 (272)
++-.|+..|++|.+++-.+.+-+|-.+|+ .+|-|.++|+|+-+. .|+|||++||.+++|++
T Consensus 199 ~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~~~IwYEHRLIDDmVAqa~ 269 (422)
T KOG1526|consen 199 IRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEALGIWYEHRLIDDMVAQAM 269 (422)
T ss_pred hhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Confidence 99999999999999999999999999998 679999999999762 58999999999998875
No 32
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=64.46 E-value=25 Score=27.38 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=38.5
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
++++|.++=|.|++--++. .++ +...+..|+++++....++. .-+...++|++|.+|
T Consensus 2 ~~~~ILl~C~~G~sSS~l~--~k~-~~~~~~~gi~~~v~a~~~~~-------------~~~~~~~~Dvill~p 58 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLV--NKM-NKAAEEYGVPVKIAAGSYGA-------------AGEKLDDADVVLLAP 58 (95)
T ss_pred CccEEEEECCCchhHHHHH--HHH-HHHHHHCCCcEEEEEecHHH-------------HHhhcCCCCEEEECc
Confidence 3468999999999987643 343 44445568888887766543 112234689999987
No 33
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=56.71 E-value=5.7 Score=39.32 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=17.2
Q ss_pred CccEEEEeecCCccccCCC
Q 024132 169 GVDLMVVRELTGGIYFGKP 187 (272)
Q Consensus 169 ~iDivIVREnTEG~Y~g~~ 187 (272)
+.|++++||||||.|.+.+
T Consensus 127 ~~~i~i~Ren~e~~y~~id 145 (413)
T PTZ00435 127 KKPIVIGRHAFGDQYKATD 145 (413)
T ss_pred CCCeeeeccccCCCcCceE
Confidence 5799999999999998874
No 34
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=56.07 E-value=9.5 Score=36.91 Aligned_cols=21 Identities=52% Similarity=0.770 Sum_probs=18.1
Q ss_pred ceEEEEECCC--CccHHHHHHHH
Q 024132 44 RYSITLLPGD--GIGPEVIAVAK 64 (272)
Q Consensus 44 ~~~IavIpGD--GIGPEV~~aa~ 64 (272)
+.+|++--|| ||||||+-.++
T Consensus 9 ~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 9 RPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCcEEEeCCCCcchHHHHHHHHH
Confidence 3589999999 89999988775
No 35
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=55.48 E-value=9.7 Score=36.65 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=17.5
Q ss_pred eEEEEECCC--CccHHHHHHHH
Q 024132 45 YSITLLPGD--GIGPEVIAVAK 64 (272)
Q Consensus 45 ~~IavIpGD--GIGPEV~~aa~ 64 (272)
.+|++--|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 589999999 89999987775
No 36
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=54.64 E-value=11 Score=36.26 Aligned_cols=20 Identities=50% Similarity=0.873 Sum_probs=17.6
Q ss_pred eEEEEECCC--CccHHHHHHHH
Q 024132 45 YSITLLPGD--GIGPEVIAVAK 64 (272)
Q Consensus 45 ~~IavIpGD--GIGPEV~~aa~ 64 (272)
.+|++--|| ||||||+-.++
T Consensus 5 p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 5 PRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CcEEEeCCCCcccHHHHHHHHH
Confidence 589999999 89999987775
No 37
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=51.19 E-value=46 Score=25.79 Aligned_cols=54 Identities=26% Similarity=0.419 Sum_probs=36.9
Q ss_pred EEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 46 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 46 ~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
+|.++=|.|++.-++ +.++ +.+.+..|+++++....++.- -+...++|.+|.+|
T Consensus 1 kIl~~Cg~G~sTS~~--~~ki-~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~Diil~~P 54 (96)
T cd05564 1 KILLVCSAGMSTSIL--VKKM-KKAAEKRGIDAEIEAVPESEL-------------EEYIDDADVVLLGP 54 (96)
T ss_pred CEEEEcCCCchHHHH--HHHH-HHHHHHCCCceEEEEecHHHH-------------HHhcCCCCEEEECh
Confidence 478899999999876 3344 444455678888887765431 12345789999877
No 38
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=50.39 E-value=12 Score=35.99 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=17.3
Q ss_pred eEEEEECCC--CccHHHHHHHH
Q 024132 45 YSITLLPGD--GIGPEVIAVAK 64 (272)
Q Consensus 45 ~~IavIpGD--GIGPEV~~aa~ 64 (272)
++|++--|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 4 RPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 489999998 89999987774
No 39
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=50.21 E-value=12 Score=35.98 Aligned_cols=18 Identities=50% Similarity=0.927 Sum_probs=15.1
Q ss_pred ceEEEEECCC--CccHHHHH
Q 024132 44 RYSITLLPGD--GIGPEVIA 61 (272)
Q Consensus 44 ~~~IavIpGD--GIGPEV~~ 61 (272)
+.+|++-.|| ||||||+.
T Consensus 3 ~~~iAit~GDPaGIGPEi~~ 22 (332)
T COG1995 3 KPRIAITMGDPAGIGPELVA 22 (332)
T ss_pred CCceEecCCCcccCCHHHHH
Confidence 3589999999 89999943
No 40
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=50.19 E-value=14 Score=35.62 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=18.0
Q ss_pred ceEEEEECCC--CccHHHHHHHH
Q 024132 44 RYSITLLPGD--GIGPEVIAVAK 64 (272)
Q Consensus 44 ~~~IavIpGD--GIGPEV~~aa~ 64 (272)
+.+|++--|| ||||||+-.++
T Consensus 5 ~p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 5 PLQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 3589999998 89999987775
No 41
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=48.74 E-value=12 Score=35.60 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=16.7
Q ss_pred eEEEEECCC--CccHHHHHHH
Q 024132 45 YSITLLPGD--GIGPEVIAVA 63 (272)
Q Consensus 45 ~~IavIpGD--GIGPEV~~aa 63 (272)
.+|++--|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 479999998 8999999877
No 42
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=48.54 E-value=25 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 024132 207 AAYEVDRIARVAFETARKRHGKLCSVD 233 (272)
Q Consensus 207 Tr~~~eRIar~AFe~A~~r~kkVT~vh 233 (272)
..+.+.+.+++|+++|+..+.+|+++|
T Consensus 11 ~~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 11 GSEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 346688999999999999888888766
No 43
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=48.47 E-value=8.7 Score=38.00 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=17.0
Q ss_pred CccEEEEeecCCccccCCC
Q 024132 169 GVDLMVVRELTGGIYFGKP 187 (272)
Q Consensus 169 ~iDivIVREnTEG~Y~g~~ 187 (272)
..+++|+||||||.|.+.+
T Consensus 124 ~~~i~i~R~~~~~~y~~iD 142 (409)
T TIGR00127 124 EKPIIIGRHAFGDQYRATD 142 (409)
T ss_pred CCCeeeeccccCCCcCceE
Confidence 4899999999999998874
No 44
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=47.39 E-value=54 Score=26.13 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=36.6
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
++|.++=|.|++-.++..-+ +.+.+..|+++++....++. .... -.-..+|++|.||
T Consensus 2 kkILlvCg~G~STSlla~k~---k~~~~e~gi~~~i~a~~~~e--~~~~---------~~~~~~DvIll~P 58 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKT---TEYLKEQGKDIEVDAITATE--GEKA---------IAAAEYDLYLVSP 58 (104)
T ss_pred cEEEEECCCchHHHHHHHHH---HHHHHHCCCceEEEEecHHH--HHHh---------hccCCCCEEEECh
Confidence 57999999999887554333 55555568888877766542 1100 0113589999987
No 45
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=46.93 E-value=14 Score=35.40 Aligned_cols=20 Identities=45% Similarity=0.702 Sum_probs=17.3
Q ss_pred eEEEEECCC--CccHHHHHHHH
Q 024132 45 YSITLLPGD--GIGPEVIAVAK 64 (272)
Q Consensus 45 ~~IavIpGD--GIGPEV~~aa~ 64 (272)
++|++--|| ||||||+-.++
T Consensus 3 ~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 3 KIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CcEEEeCCCCcchHHHHHHHHh
Confidence 579999999 89999987775
No 46
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=43.52 E-value=1e+02 Score=26.85 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=38.9
Q ss_pred EEEEECC-CCccHHHHHHHHHHHHHhhcccCCeeEEEEEe----cchh----hhhhcCCCCCHHHH----HHHHhcCeEE
Q 024132 46 SITLLPG-DGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMP----MGGS----ALDLVGVPLPEETL----AAAKQSDAVL 112 (272)
Q Consensus 46 ~IavIpG-DGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~----~G~~----~~~~~G~~lp~etl----~~ik~~daiL 112 (272)
.|.+.|= +|-=-.+.+++++-++.. |.+.+..... .+.. ++.+....++++++ +.+.++|+++
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~----G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI 80 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEA----GAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGII 80 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHc----CCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEE
Confidence 4445544 666666667766666665 5666666543 1222 12222256665554 5589999999
Q ss_pred Eee
Q 024132 113 LGA 115 (272)
Q Consensus 113 ~Ga 115 (272)
||.
T Consensus 81 ~gs 83 (207)
T COG0655 81 FGS 83 (207)
T ss_pred EeC
Confidence 975
No 47
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=41.72 E-value=73 Score=25.78 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=37.0
Q ss_pred eEEEEECCC----CccHHHHHHHHHHHHHhhcccCCeeEEEEEecch---hhhhh---cCCCC---CHHHHHHHHhcCeE
Q 024132 45 YSITLLPGD----GIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGG---SALDL---VGVPL---PEETLAAAKQSDAV 111 (272)
Q Consensus 45 ~~IavIpGD----GIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~---~~~~~---~G~~l---p~etl~~ik~~dai 111 (272)
+||.+|-|- |..-.++++..+.++.. |+++++.. +.. ..+.. ..... .++..+.++++|++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~----g~e~~~i~--l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA----GAEVEVID--LADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGI 74 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT----TEEEEEEE--CTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc----CCEEEEEe--ccccchhhcccccccccCCcHHHHHHHhceecCCeE
Confidence 467777664 56666666666666654 44555543 332 11111 01122 35567888999999
Q ss_pred EEee
Q 024132 112 LLGA 115 (272)
Q Consensus 112 L~Ga 115 (272)
+++.
T Consensus 75 I~~s 78 (152)
T PF03358_consen 75 IFAS 78 (152)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9975
No 48
>PRK11175 universal stress protein UspE; Provisional
Probab=39.05 E-value=2.9e+02 Score=24.83 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhC-CCcEEEEe
Q 024132 211 VDRIARVAFETARKR-HGKLCSVD 233 (272)
Q Consensus 211 ~eRIar~AFe~A~~r-~kkVT~vh 233 (272)
+++++++|+++|+.. +.+++++|
T Consensus 172 ~~~al~~a~~la~~~~~a~l~ll~ 195 (305)
T PRK11175 172 NEKLVEEAIDLAEQLNHAEVHLVN 195 (305)
T ss_pred HHHHHHHHHHHHhhCcCCceEEEE
Confidence 578999999999887 78888887
No 49
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=37.99 E-value=44 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCC
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVDKA 235 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vhKa 235 (272)
+.+++++++|+.+|+....+|+++|=.
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v~ 36 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNVI 36 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEEE
Confidence 568999999999999887788777643
No 50
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=37.63 E-value=1.1e+02 Score=24.28 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=36.1
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
++|.++=|-|+|--++-.-.+... +..|++++.+.+.... .. +....+|++|+||
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~---~~~gi~~~V~A~~~~~--~~-----------~~~~~~DviLl~P 58 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQA---EKYEVPVIIEAFPETL--AG-----------EKGQNADVVLLGP 58 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHH---HHCCCCEEEEEeecch--hh-----------ccccCCCEEEECH
Confidence 589999999999988874444332 3457788876643221 11 1233689999987
No 51
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=37.47 E-value=57 Score=24.13 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcccCCeeEEEEEecch--hhhhhcCCCCC
Q 024132 59 VIAVAKNVLKLAGSLEGIEFAFQEMPMGG--SALDLVGVPLP 98 (272)
Q Consensus 59 V~~aa~~VL~a~~~~~g~~ie~~~~~~G~--~~~~~~G~~lp 98 (272)
+++.+..+|+.+... .++++..+++-. +-++++|..+|
T Consensus 12 LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~~l~~~Y~~~IP 51 (81)
T PF05768_consen 12 LCDEAKEILEEVAAE--FPFELEEVDIDEDPELFEKYGYRIP 51 (81)
T ss_dssp HHHHHHHHHHHCCTT--STCEEEEEETTTTHHHHHHSCTSTS
T ss_pred hHHHHHHHHHHHHhh--cCceEEEEECCCCHHHHHHhcCCCC
Confidence 688999999987654 346666666654 44667887777
No 52
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=36.32 E-value=25 Score=33.69 Aligned_cols=19 Identities=53% Similarity=0.838 Sum_probs=15.3
Q ss_pred EEEEECCC--CccHHHHHHHH
Q 024132 46 SITLLPGD--GIGPEVIAVAK 64 (272)
Q Consensus 46 ~IavIpGD--GIGPEV~~aa~ 64 (272)
+|++--|| ||||||+-.++
T Consensus 1 ~iaIT~GDp~GIGpEii~ka~ 21 (320)
T TIGR00557 1 RIAITLGDPAGIGPEIILKAL 21 (320)
T ss_pred CEEEecCCCcchHHHHHHHHH
Confidence 37788888 89999987765
No 53
>PRK15005 universal stress protein F; Provisional
Probab=35.44 E-value=54 Score=25.94 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEe
Q 024132 211 VDRIARVAFETARKRHGKLCSVD 233 (272)
Q Consensus 211 ~eRIar~AFe~A~~r~kkVT~vh 233 (272)
+++.+++|+++|+..+.+|+++|
T Consensus 17 ~~~a~~~a~~la~~~~~~l~ll~ 39 (144)
T PRK15005 17 TQRVISHVEAEAKIDDAEVHFLT 39 (144)
T ss_pred HHHHHHHHHHHHhccCCeEEEEE
Confidence 68999999999998777777655
No 54
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=33.59 E-value=2.5e+02 Score=24.23 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.6
Q ss_pred HHHHHHhcCeEEEeec
Q 024132 101 TLAAAKQSDAVLLGAI 116 (272)
Q Consensus 101 tl~~ik~~daiL~Gav 116 (272)
+++.+.++|++++|.=
T Consensus 63 ~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 63 TPDELADYDAIIFGTP 78 (200)
T ss_pred CHHHHHhCCEEEEEec
Confidence 3789999999999863
No 55
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=33.02 E-value=2.3e+02 Score=25.85 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=38.7
Q ss_pred eEEEEECCCCccH-HHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 45 YSITLLPGDGIGP-EVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 45 ~~IavIpGDGIGP-EV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
.+|++||-.+-.| +..+.....++.++ +. +....++.. ..+.-.++..+.++++|+++++-
T Consensus 29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG----~~-~v~~l~i~~-----r~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 29 AIIVIITSASEEPREVGERYITIFSRLG----VK-EVKILDVRE-----REDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHcC----Cc-eeEEEecCC-----hHHccCHHHHHHHhhCCEEEEeC
Confidence 5899999766555 55666666776653 42 223333321 01224677889999999999965
No 56
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=32.51 E-value=17 Score=36.70 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=25.4
Q ss_pred CccEEEEeecCCccccCCCCCCcccccCcceEEEeEeecHHHHH
Q 024132 169 GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVD 212 (272)
Q Consensus 169 ~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~iTr~~~e 212 (272)
..+|+|.|||+||.|.+.+.-. .+. ..-..++||+.+|
T Consensus 195 ~~pI~i~Rha~gd~Y~~iD~vi----~~~--g~~~~~~~rEnte 232 (483)
T PLN03065 195 KKPICIGRHAFGDQYRATDTVI----KGP--GKLKMVFVPEDGN 232 (483)
T ss_pred CCCeEEeecccCCCcCceEEEE----ecC--CeeEEEeecCCCC
Confidence 5899999999999998863211 111 1234567777666
No 57
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=31.74 E-value=57 Score=25.81 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=43.1
Q ss_pred cccccccCCCCC-CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHh
Q 024132 31 IRCAAAATAPPT-KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQ 107 (272)
Q Consensus 31 ~~~~~~~~~~~~-~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~ 107 (272)
+||+.+.+=..+ .+=...+-.|.| . -|.++++.+. .+|+|++-....+-.=....-|+.+|++..+.+.+
T Consensus 7 ~r~AvAl~Yd~~~~~AP~vvA~G~G--~----iAe~II~~Ak-e~~Vpi~edp~Lv~~L~~lelg~~IPeelY~vVAE 77 (92)
T COG2257 7 IRKAVALAYDEGKDKAPKVVASGKG--E----IAEKIIEKAK-EHGVPIQEDPLLVELLLKLELGDEIPEELYEVVAE 77 (92)
T ss_pred cchheeeeeccCCCCCCEEEeecch--H----HHHHHHHHHH-HcCCCcccCHHHHHHHHhccccccCCHHHHHHHHH
Confidence 588888776654 222344556666 2 3556666553 45788887665433222334788999999987765
No 58
>PRK09982 universal stress protein UspD; Provisional
Probab=31.42 E-value=50 Score=26.66 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCC
Q 024132 210 EVDRIARVAFETARKRHGKLCSVDKA 235 (272)
Q Consensus 210 ~~eRIar~AFe~A~~r~kkVT~vhKa 235 (272)
.+++.+++|+++|++.+.+|+++|=-
T Consensus 15 ~s~~al~~A~~lA~~~~a~l~llhV~ 40 (142)
T PRK09982 15 EDALLVNKALELARHNDAHLTLIHID 40 (142)
T ss_pred chHHHHHHHHHHHHHhCCeEEEEEEc
Confidence 46889999999999888888888743
No 59
>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=30.26 E-value=1.7e+02 Score=26.98 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHHH-----------Hh-CC----CcEEEEeCCccccch--hhHHHHHHHHhcC--------------
Q 024132 207 AAYEVDRIARVAFETA-----------RK-RH----GKLCSVDKANVLEVM--VYMLKQFSLVAHV-------------- 254 (272)
Q Consensus 207 Tr~~~eRIar~AFe~A-----------~~-r~----kkVT~vhKaNVl~~s--~lf~ev~~eva~~-------------- 254 (272)
....+..++.-+|+-. .+ || =+||++|.++.=..- .+|.+........
T Consensus 80 ~~~~i~~~l~~~f~~~~~~~~~~~~~L~~~~RvQ~~FHVTL~H~as~k~~~~k~lW~~y~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T PF08302_consen 80 PTQDIKSLLEKLFEDSPPETARFYNQLKNSRRVQPEFHVTLIHRASSKEQPAKELWKRYTKLYKSALKKNPKQEPTQTPT 159 (257)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhCCCCCCCCeEEEEecccCCcCcchHHHHHHHHHHHhhcccccccccccccc
Confidence 5667777888887643 12 22 379999999887644 7999887754320
Q ss_pred ----cceeeeEeeecccceec
Q 024132 255 ----SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 ----~v~~~~~~iD~~~m~lv 271 (272)
+|.++...-|.-.|-++
T Consensus 160 ~~~~~v~L~rlvwd~rimai~ 180 (257)
T PF08302_consen 160 LGSCDVRLERLVWDDRIMAIV 180 (257)
T ss_pred cceEEEEEEEEEECCcEEEEE
Confidence 36777777777666544
No 60
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=30.15 E-value=46 Score=26.48 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
+.+++.+++|+++|+..+.+|+++|=
T Consensus 10 ~~s~~al~~a~~~a~~~~~~l~ll~v 35 (146)
T cd01989 10 KKSKNALKWALDNLATKGQTIVLVHV 35 (146)
T ss_pred cccHHHHHHHHHhccCCCCcEEEEEe
Confidence 45888999999999887778888773
No 61
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=28.75 E-value=88 Score=23.21 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEe
Q 024132 208 AYEVDRIARVAFETARKRHGKLCSVD 233 (272)
Q Consensus 208 r~~~eRIar~AFe~A~~r~kkVT~vh 233 (272)
...+.+++++|.++|..++.++|++|
T Consensus 9 ~~~~~~~l~~a~~~a~~~~~~i~~l~ 34 (130)
T cd00293 9 SEESERALRWAARLARRLGAELVLLH 34 (130)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45688899999999999888888876
No 62
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=26.41 E-value=1e+02 Score=25.43 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeec
Q 024132 53 DGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAI 116 (272)
Q Consensus 53 DGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gav 116 (272)
||+|+.|++.-.+-. +.+-+++-++.| ..+.+.++.+.++|.+++--.
T Consensus 14 DG~G~~va~~L~~~~-------~~~~~v~vi~~~---------~~~~~l~~~l~~~d~viiVDA 61 (146)
T cd06062 14 EGIGVHAVERLEENY-------SFPENVELIDGG---------TLGLELLPYIEEADRLIIVDA 61 (146)
T ss_pred CcHHHHHHHHHHHhc-------CCCCCeEEEECC---------CCHHHHHHHHhcCCEEEEEEc
Confidence 899998776643221 122223333433 346788888889998877543
No 63
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=26.19 E-value=83 Score=26.05 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=29.5
Q ss_pred CCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeec
Q 024132 53 DGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAI 116 (272)
Q Consensus 53 DGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gav 116 (272)
||+|+.|+++-.+ . ..+=++.-.+.| ..+.+.+..+.++|.+++--.
T Consensus 14 DG~G~~v~~~L~~----~----~~~~~v~~id~g---------t~~~~l~~~l~~~d~vIiVDA 60 (146)
T cd06063 14 DGVGPILIRRLQA----Y----LLPPHVRLVDCG---------TAGMEVMFRARGAKQLIIIDA 60 (146)
T ss_pred CcHHHHHHHHHhh----c----CCCCCeEEEECC---------CCHHHHHHHhcCCCEEEEEEe
Confidence 7999987766543 1 122223334433 357888888999998877543
No 64
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=24.86 E-value=1.2e+02 Score=27.17 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=31.6
Q ss_pred cccccccCCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEE
Q 024132 31 IRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQE 82 (272)
Q Consensus 31 ~~~~~~~~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~ 82 (272)
+-|+++++.. ....+|++.|+++.+ .....-..+.+.+.+..|+++++..
T Consensus 16 ~~~~~~~~~~-~~~l~vg~~~~~~~~-~~~~~~~~l~~~l~~~~g~~v~~~~ 65 (288)
T TIGR03431 16 ISSNAQAEDW-PKELNFGIIPTENAS-DLKQRWEPLADYLSKKLGVKVKLFF 65 (288)
T ss_pred HhcchhhhcC-CCeEEEEEcCCCCHH-HHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4566664444 245899999988543 2233334455667666788888654
No 65
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=23.39 E-value=1.4e+02 Score=27.82 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=34.5
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEe
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLG 114 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~G 114 (272)
++|+||-||- .-+.+.+.+.+ .|+.+-. +-+..+.|...|..+.+..-+.++++|++++-
T Consensus 3 ~~~~v~ggd~-------r~~~~~~~l~~-~G~~v~~--~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~ 62 (296)
T PRK08306 3 KHIAVIGGDA-------RQLELIRKLVE-LGAKVSL--VGFDQLDHGFTGATKSSSLEEALSDVDVIILP 62 (296)
T ss_pred cEEEEEcCcH-------HHHHHHHHHHH-CCCEEEE--EeccccccccCCceeeccHHHHhccCCEEEEC
Confidence 6899999993 22223333332 2555544 33333445555665544444668899999874
No 66
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=22.64 E-value=1.2e+02 Score=25.67 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 53 DGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 53 DGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
||+|++|+++-.+. ++.+-++.-++.| ..+.+.++.+..+|.+++--
T Consensus 16 DGvG~~va~~L~~~-------~~~~~~v~vid~g---------t~~~~ll~~l~~~d~vIiVD 62 (164)
T PRK10466 16 EAIGVRIVEALEQR-------YILPDYVEILDGG---------TAGMELLGDMANRDHLIIAD 62 (164)
T ss_pred CcHHHHHHHHHHHh-------cCCCCCeEEEecc---------ccHHHHHHHHhCCCEEEEEE
Confidence 78999877654321 1222233334444 35778888888999886643
No 67
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=22.60 E-value=1.3e+02 Score=24.79 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 53 DGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 53 DGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
||+|++|+++-.+-. ..+=.+.-++.| ..+.+.++.++++|.+++--
T Consensus 13 Dg~G~~v~~~L~~~~-------~~~~~v~~id~g---------~~~~~l~~~l~~~d~viiVD 59 (145)
T TIGR00072 13 DGFGPRVAERLEERY-------EFPPGVEVLDGG---------TLGLELLDAIEGADRVIVVD 59 (145)
T ss_pred CcHHHHHHHHHHHhc-------CCCCCeEEEECC---------CCHHHHHHHHhCCCEEEEEE
Confidence 899997776654321 112123333333 35778888999999887743
No 68
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=22.55 E-value=2.1e+02 Score=28.67 Aligned_cols=25 Identities=4% Similarity=-0.056 Sum_probs=21.8
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhC
Q 024132 201 FNTEVYAAYEVDRIARVAFETARKR 225 (272)
Q Consensus 201 ~~~~~iTr~~~eRIar~AFe~A~~r 225 (272)
.++..+|+++.++++..+-.+|+..
T Consensus 388 ~s~~~~s~~~l~~l~~~~~~lA~~E 412 (425)
T PRK00877 388 SSVIELSKEGLKALGPAIVTLAEAE 412 (425)
T ss_pred eeEEEECHHHHHHHHHHHHHHHHhC
Confidence 5677899999999999999999865
No 69
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=22.46 E-value=68 Score=30.85 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=32.5
Q ss_pred CCHHHHHHHHhcCeEEEeeccCCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCC
Q 024132 97 LPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQ 155 (272)
Q Consensus 97 lp~etl~~ik~~daiL~Gavg~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg 155 (272)
-+++++++++++|.|++||-. |-..-. +.......--.||+.---.+.+.|+..-||
T Consensus 179 a~~eaveAI~~AD~IviGPgS-l~TSIl-P~Lllp~I~eaLr~~~ap~i~v~n~~~~~g 235 (323)
T COG0391 179 AAPEAVEAIKEADLIVIGPGS-LFTSIL-PILLLPGIAEALRETVAPIVYVCNLMTQAG 235 (323)
T ss_pred CCHHHHHHHHhCCEEEEcCCc-cHhhhc-hhhchhHHHHHHHhCCCCEEEeccCCCCCC
Confidence 468999999999999999942 210000 011111122456665555555666555555
No 70
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=20.89 E-value=1.1e+02 Score=23.45 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 210 EVDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 210 ~~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
.+++.+++|.++|+..+.+++++|=
T Consensus 11 ~s~~al~~a~~la~~~~~~l~ll~v 35 (124)
T cd01987 11 NAERLIRRAARLADRLKAPWYVVYV 35 (124)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEE
Confidence 4788999999999988778887773
No 71
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=20.20 E-value=51 Score=31.41 Aligned_cols=112 Identities=24% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHhcCeEEEeeccCCCCCCCCCCCCCccchhhhhhccCceEEeEEeeec-CCCccCCccc-----------
Q 024132 96 PLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVL-PQLVDSSTLK----------- 163 (272)
Q Consensus 96 ~lp~etl~~ik~~daiL~Gavg~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~-pg~~~~spLk----------- 163 (272)
.-.++++++|+++|.+++||- +|-. ...|--.+-.+|+.+ --+.+-=+..+ -|.+...|-.
T Consensus 174 ~a~p~vl~AI~~AD~IiiGPg-np~T-----SI~P~L~v~gi~eAL-~~a~vV~Vsp~Ig~~~v~GPA~~lm~a~g~e~s 246 (303)
T PRK13606 174 KPAPGVLEAIEEADAVIIGPS-NPVT-----SIGPILAVPGIREAL-TEAPVVAVSPIIGGAPVSGPAAKLMAAIGVEVS 246 (303)
T ss_pred CCCHHHHHHHHhCCEEEECCC-ccHH-----hhchhccchhHHHHH-hCCCEEEEcCCCCCCcCCChhHHHHHHcCCcch
Confidence 467899999999999999994 2210 011111133566666 11111111111 1111111110
Q ss_pred ----cccC-CCccEEEEeecCCccccCCCCCCcccccCcceEEEeEeecHHHHHHHHHHHHHHHH
Q 024132 164 ----KEVA-EGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETAR 223 (272)
Q Consensus 164 ----~~~~-~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~ 223 (272)
...| +=+|.+|+=+-.... ... + ..-...++..=+.+..+|+|++..+++.
T Consensus 247 ~~gva~~Y~~~~D~~vid~~D~~~--~~~-g------~~v~~~~t~m~~~~~~~~la~~~l~~~~ 302 (303)
T PRK13606 247 AAGVAEHYGDLLDGFVIDEADAAI--EVP-G------VEVLRTDTLMTDPEDTARLARAILELAG 302 (303)
T ss_pred HHHHHHhccccceEEEECCCcccc--ccC-C------ceEEEeccCCCCHHHHHHHHHHHHHHhc
Confidence 0112 335766665443332 000 0 0124568888899999999999998874
No 72
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=20.03 E-value=1.2e+02 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEE
Q 024132 211 VDRIARVAFETARKRHGKLCS 231 (272)
Q Consensus 211 ~eRIar~AFe~A~~r~kkVT~ 231 (272)
...+++.|+++|+.++.||..
T Consensus 40 a~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEE
Confidence 678999999999999887653
Done!