Query 024132
Match_columns 272
No_of_seqs 125 out of 1064
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 18:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8w_A 3-isopropylmalate dehyd 100.0 8.6E-75 2.9E-79 554.8 18.3 269 1-271 1-271 (405)
2 3u1h_A 3-isopropylmalate dehyd 100.0 1.2E-72 3.9E-77 537.5 20.5 232 38-271 17-250 (390)
3 3udu_A 3-isopropylmalate dehyd 100.0 2.6E-72 9E-77 531.5 19.0 223 43-271 5-231 (361)
4 3vmk_A 3-isopropylmalate dehyd 100.0 5.6E-72 1.9E-76 531.5 20.5 229 42-271 11-243 (375)
5 1cnz_A IPMDH, IMDH, protein (3 100.0 6.1E-71 2.1E-75 523.2 19.2 230 41-271 1-234 (363)
6 2y3z_A 3-isopropylmalate dehyd 100.0 1.1E-70 3.9E-75 520.2 18.3 223 44-271 3-227 (359)
7 1a05_A IPMDH, IMDH, 3-isopropy 100.0 1.5E-70 5E-75 519.9 18.0 226 45-271 2-229 (358)
8 1vlc_A 3-isopropylmalate dehyd 100.0 3.7E-70 1.3E-74 517.6 17.3 224 43-271 11-238 (366)
9 3flk_A Tartrate dehydrogenase/ 100.0 8.8E-70 3E-74 515.2 17.3 224 43-271 4-232 (364)
10 1w0d_A 3-isopropylmalate dehyd 100.0 5.5E-67 1.9E-71 491.9 19.0 216 44-271 1-219 (337)
11 1wpw_A 3-isopropylmalate dehyd 100.0 3.7E-66 1.3E-70 485.9 20.8 205 45-271 2-207 (336)
12 3ty4_A Probable homoisocitrate 100.0 4.3E-66 1.5E-70 489.7 21.2 216 42-271 8-243 (366)
13 1x0l_A Homoisocitrate dehydrog 100.0 9.2E-66 3.2E-70 482.7 21.0 206 44-271 1-210 (333)
14 2iv0_A Isocitrate dehydrogenas 100.0 1.2E-64 4.2E-69 486.5 21.0 218 44-271 27-284 (412)
15 3blx_B Isocitrate dehydrogenas 100.0 3.9E-65 1.3E-69 481.6 15.2 210 39-271 16-229 (354)
16 3dms_A Isocitrate dehydrogenas 100.0 1.7E-64 6E-69 487.4 19.2 219 43-271 35-300 (427)
17 2e0c_A 409AA long hypothetical 100.0 3.1E-64 1.1E-68 483.5 20.4 219 43-271 23-281 (409)
18 2d4v_A Isocitrate dehydrogenas 100.0 2.1E-63 7.3E-68 479.8 20.9 219 43-271 25-303 (429)
19 1tyo_A Isocitrate dehydrogenas 100.0 2.1E-63 7.2E-68 480.5 19.9 217 44-271 35-294 (435)
20 2d1c_A Isocitrate dehydrogenas 100.0 7.9E-63 2.7E-67 480.6 22.9 208 44-271 19-231 (496)
21 1hqs_A Isocitrate dehydrogenas 100.0 4.4E-63 1.5E-67 477.2 20.6 218 44-271 19-294 (423)
22 3blx_A Isocitrate dehydrogenas 100.0 1.6E-63 5.5E-68 469.8 15.4 207 40-271 13-224 (349)
23 3us8_A Isocitrate dehydrogenas 100.0 1.8E-59 6.1E-64 452.5 14.1 230 28-271 15-280 (427)
24 2uxq_A Isocitrate dehydrogenas 100.0 6.5E-59 2.2E-63 446.3 11.9 218 44-271 6-256 (402)
25 1lwd_A Isocitrate dehydrogenas 100.0 8.7E-58 3E-62 439.8 10.3 218 44-271 8-259 (413)
26 1zor_A Isocitrate dehydrogenas 100.0 4.2E-57 1.4E-61 433.5 10.8 218 44-271 7-254 (399)
27 4aoy_A Isocitrate dehydrogenas 100.0 3.9E-55 1.3E-59 419.5 13.1 216 44-271 7-257 (402)
28 2qfy_A Isocitrate dehydrogenas 100.0 5.5E-54 1.9E-58 414.7 10.3 223 44-271 22-275 (427)
29 2hi1_A 4-hydroxythreonine-4-ph 76.7 3.3 0.00011 38.4 5.5 37 47-83 9-64 (330)
30 3cis_A Uncharacterized protein 75.8 11 0.00036 32.9 8.4 26 209-234 182-207 (309)
31 3lxy_A 4-hydroxythreonine-4-ph 73.8 3.6 0.00012 38.2 4.9 21 43-63 7-29 (334)
32 3olq_A Universal stress protei 70.6 19 0.00063 31.2 8.7 25 210-234 175-201 (319)
33 1yxo_A 4-hydroxythreonine-4-ph 69.6 4 0.00014 37.9 4.2 19 45-63 3-23 (328)
34 1e2b_A Enzyme IIB-cellobiose; 65.8 21 0.00073 27.0 7.1 57 44-116 3-59 (106)
35 4aty_A Terephthalate 1,2-CIS-d 65.5 3.3 0.00011 38.4 2.8 22 43-64 7-30 (349)
36 3tsn_A 4-hydroxythreonine-4-ph 57.3 4.9 0.00017 37.8 2.4 20 44-63 4-25 (367)
37 2q62_A ARSH; alpha/beta, flavo 53.1 72 0.0025 27.6 9.2 66 43-115 33-106 (247)
38 3mt0_A Uncharacterized protein 52.0 1.1E+02 0.0037 25.9 13.2 24 211-234 154-177 (290)
39 3s3t_A Nucleotide-binding prot 44.0 20 0.00067 27.0 3.6 26 209-234 16-41 (146)
40 3hgm_A Universal stress protei 42.8 21 0.00073 26.8 3.6 26 209-234 13-38 (147)
41 1sqs_A Conserved hypothetical 40.3 1.1E+02 0.0037 25.7 8.2 17 99-115 71-87 (242)
42 3fg9_A Protein of universal st 39.4 27 0.00092 26.7 3.8 27 208-234 27-53 (156)
43 2z08_A Universal stress protei 38.0 28 0.00096 26.0 3.6 25 209-233 13-37 (137)
44 3kuu_A Phosphoribosylaminoimid 37.2 1.2E+02 0.0041 25.4 7.6 66 39-117 7-77 (174)
45 3dlo_A Universal stress protei 36.8 31 0.0011 26.9 3.8 26 209-234 36-61 (155)
46 2fzv_A Putative arsenical resi 36.3 1.1E+02 0.0037 27.2 7.7 68 42-115 56-131 (279)
47 3nbm_A PTS system, lactose-spe 35.5 52 0.0018 25.1 4.8 59 42-116 4-62 (108)
48 3tnj_A Universal stress protei 35.0 29 0.00099 26.2 3.3 25 209-233 17-41 (150)
49 4grd_A N5-CAIR mutase, phospho 33.8 1.3E+02 0.0043 25.3 7.2 63 42-117 10-77 (173)
50 3idf_A USP-like protein; unive 33.4 30 0.001 25.7 3.1 26 209-234 12-38 (138)
51 1jmv_A USPA, universal stress 31.4 36 0.0012 25.3 3.3 24 210-233 14-37 (141)
52 2fgx_A Putative thioredoxin; N 30.1 90 0.0031 23.6 5.3 51 44-98 29-81 (107)
53 1mjh_A Protein (ATP-binding do 29.7 26 0.0009 26.9 2.2 25 209-233 16-40 (162)
54 2dum_A Hypothetical protein PH 29.6 31 0.0011 26.8 2.7 25 209-233 16-40 (170)
55 3ksx_A Nitrate transport prote 29.0 99 0.0034 26.6 6.1 81 32-116 18-106 (324)
56 3rpe_A MDAB, modulator of drug 28.5 77 0.0026 27.1 5.2 60 43-115 24-91 (218)
57 2vzf_A NADH-dependent FMN redu 26.3 2.3E+02 0.0077 22.8 7.6 66 44-115 2-77 (197)
58 2m1z_A LMO0427 protein; homolo 26.2 2.2E+02 0.0075 21.7 7.8 63 45-117 3-67 (106)
59 1q77_A Hypothetical protein AQ 26.0 40 0.0014 25.0 2.6 24 211-234 17-40 (138)
60 4b4k_A N5-carboxyaminoimidazol 25.9 1.8E+02 0.0062 24.5 6.8 60 45-117 23-87 (181)
61 3k1y_A Oxidoreductase; structu 25.0 2.8E+02 0.0097 22.7 8.7 72 43-115 10-93 (191)
62 3del_B Arginine binding protei 24.8 87 0.003 24.9 4.7 48 33-85 1-59 (242)
63 1t0i_A YLR011WP; FMN binding p 24.5 2E+02 0.0068 22.7 6.8 17 99-115 76-92 (191)
64 3d7n_A Flavodoxin, WRBA-like p 23.7 2E+02 0.0069 23.0 6.8 57 44-115 6-62 (193)
65 2a2l_A Unknown; structural gen 23.5 1.3E+02 0.0044 24.0 5.4 39 200-238 6-47 (145)
66 3fdx_A Putative filament prote 23.5 30 0.001 25.8 1.5 25 211-235 16-40 (143)
67 2zki_A 199AA long hypothetical 23.2 1.5E+02 0.0051 23.6 5.8 14 102-115 65-78 (199)
68 1xmp_A PURE, phosphoribosylami 23.1 2.2E+02 0.0074 23.8 6.7 60 45-117 12-76 (170)
69 3czc_A RMPB; alpha/beta sandwi 22.4 2.3E+02 0.0079 21.0 6.4 58 43-115 17-75 (110)
70 3oow_A Phosphoribosylaminoimid 22.2 3.3E+02 0.011 22.6 7.6 60 45-117 6-70 (166)
71 1kae_A HDH, histidinol dehydro 21.9 1.3E+02 0.0043 28.9 5.7 27 200-226 389-415 (434)
72 3ors_A N5-carboxyaminoimidazol 21.6 2.6E+02 0.009 23.1 6.9 61 44-117 3-68 (163)
73 1tq8_A Hypothetical protein RV 21.5 71 0.0024 24.9 3.4 23 209-232 28-50 (163)
No 1
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=8.6e-75 Score=554.76 Aligned_cols=269 Identities=68% Similarity=1.057 Sum_probs=212.5
Q ss_pred CcccccccceeecccccccccccccCCccccccccccCCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEE
Q 024132 1 MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAF 80 (272)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~ 80 (272)
|++..+-|.-.++-.--..-++|.-..|.+++|.+..++. ++|+|+||||||||||||+++++||+++.+++|++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~ 78 (405)
T 3r8w_A 1 MAAALQTNIRTVKVPATFRAVSKQSLAPFRVRCAVASPGK--KRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNF 78 (405)
T ss_dssp ------------------------------------------CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CccccccceeccccchhhhcccccccCcceeEeecccccC--CCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEE
Confidence 4444454444444332333355555778999998665554 45899999999999999999999999999888999999
Q ss_pred EEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCC
Q 024132 81 QEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSS 160 (272)
Q Consensus 81 ~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~s 160 (272)
+++++|+++|+++|++||++++++|+++|++||||+|+|+|+..+.+.+|+++|+.||++||||||+||+|++||+.+.|
T Consensus 79 ~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~~~~~~~~~p~~~ll~LRk~ldLyaNlRP~k~~~gl~~~s 158 (405)
T 3r8w_A 79 REMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDAS 158 (405)
T ss_dssp EECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTSCGGGSHHHHHHHHHHHHTCCEEEEEEECCGGGGGGS
T ss_pred EEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCccCCccccCcccchHHHHHHhCCeEEEEEeeccCCccccC
Confidence 99999999999999999999999999999999999999998766666777888999999999999999999999998789
Q ss_pred ccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccc
Q 024132 161 TLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEV 240 (272)
Q Consensus 161 pLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~ 240 (272)
|||++.++++|||||||||||+|+|.+++....+.++++|+++++||++++|||+|+|||||++|+||||+|||+|||++
T Consensus 159 plk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~ 238 (405)
T 3r8w_A 159 TLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA 238 (405)
T ss_dssp SBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECSSSCEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHH
T ss_pred ccccccCCCceEEEEeeCCCCeecCCccccccCCCCceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc
Confidence 99987788999999999999999998654321123467899999999999999999999999999999999999999997
Q ss_pred hhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 241 MVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 241 s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
++||+++|+|++++ +|+++|++||+++||||
T Consensus 239 sglf~~~~~eva~eYPdV~~~~~~VD~~amqLV 271 (405)
T 3r8w_A 239 SILWRKRVTALASEYPDVELSHMYVDNAAMQLV 271 (405)
T ss_dssp HHHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHH
Confidence 79999999999984 89999999999999997
No 2
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=1.2e-72 Score=537.51 Aligned_cols=232 Identities=50% Similarity=0.745 Sum_probs=207.5
Q ss_pred CCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeecc
Q 024132 38 TAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIG 117 (272)
Q Consensus 38 ~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg 117 (272)
.-+.+.+|+|+||||||||||||+++++||+++.+++|++|+|+++++|+++|+++|++||++++++|+++|++||||+|
T Consensus 17 ~~~~~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg 96 (390)
T 3u1h_A 17 YFQGAMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVG 96 (390)
T ss_dssp -------CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECC
T ss_pred hcccCccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcC
Confidence 33344458999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCc
Q 024132 118 GYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGE 197 (272)
Q Consensus 118 ~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~ 197 (272)
+|.|+..+.+.++++.++.||++||||||+||+|++||+++.||||++..+++|||||||||||+|+|.++... ..+.
T Consensus 97 ~P~~~~~~~~~~~~~~ll~LRk~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~--~~g~ 174 (390)
T 3u1h_A 97 GPKWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERY--EEGE 174 (390)
T ss_dssp CSTTTSSCCSSSSSCCHHHHHHHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC---------CTTC
T ss_pred CCCcCCCCcccCccchHHHHHHHhCCeEEEEEeeccCCccccCCcccccccCCcEEEEeeCCCCeecCcccccc--CCCC
Confidence 99997767778888999999999999999999999999988899998777899999999999999999865421 1245
Q ss_pred ceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 198 EIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 198 ~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
++|+++++|||+++|||+|+||+||++|+||||+|||+|||.+++||+++|+|+|++ +|+++|++||+++||||
T Consensus 175 ~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl~t~glfr~~~~eva~eYPdV~~~~~~VD~~amqLV 250 (390)
T 3u1h_A 175 EAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVLESSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLI 250 (390)
T ss_dssp SEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred ceEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCcccccchHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHH
Confidence 789999999999999999999999999999999999999998789999999999994 89999999999999997
No 3
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=2.6e-72 Score=531.48 Aligned_cols=223 Identities=41% Similarity=0.697 Sum_probs=209.0
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWD 122 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~ 122 (272)
++|+|+||||||||||||+++++||+++.+.+|++|+|+++++|+++|+++|++||++|+++|+++|++||||+|+|.|+
T Consensus 5 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~ 84 (361)
T 3udu_A 5 KTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWD 84 (361)
T ss_dssp CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGT
T ss_pred cceeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcC
Confidence 34899999999999999999999999998888999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCccc-hhhhhhccCceEEeEEeeecCCCccCCcccccc-CCCccEEEEeecCCccccCCCCCCcccccCcceE
Q 024132 123 KNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIG 200 (272)
Q Consensus 123 ~~~~~~~~~s~-~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~-~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA 200 (272)
..+.+.++++. ++.||++||||||+||+|++||+++.||||+++ ++++|||||||||||+|+|.+++ . +++|
T Consensus 85 ~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~-----~-~~~a 158 (361)
T 3udu_A 85 NLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDL-----G-KESA 158 (361)
T ss_dssp TSCGGGSHHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEE-----C-SSEE
T ss_pred CCCCCcCccccchHHHHHHcCCEEEEEEeeccCCccccCCCccccccCCCcEEEEcccCCCeecCccCC-----c-CceE
Confidence 66666677766 899999999999999999999998889999877 78999999999999999998432 2 5789
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhc--CcceeeeEeeecccceec
Q 024132 201 FNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 201 ~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv 271 (272)
+++++|||+++|||+|+||+||++|+||||+|||+|||++++||+++|+|+|+ ++|+++|++||+++||||
T Consensus 159 ~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~t~glf~~~~~eva~eypdV~~~~~~VD~~am~lv 231 (361)
T 3udu_A 159 YDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYMYVDNAAMQIV 231 (361)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHH
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhccchHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999 489999999999999997
No 4
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=5.6e-72 Score=531.47 Aligned_cols=229 Identities=42% Similarity=0.696 Sum_probs=211.2
Q ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCC
Q 024132 42 TKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKW 121 (272)
Q Consensus 42 ~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~ 121 (272)
+.+|+|+||||||||||||+++++||+++.+.+|++|+|+++++|+++|+++|++||++|+++|+++|++||||+|+|.|
T Consensus 11 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~ 90 (375)
T 3vmk_A 11 GSSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKW 90 (375)
T ss_dssp TSCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGG
T ss_pred CCcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCc
Confidence 45799999999999999999999999999988999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCccc-hhhhhhccCceEEeEEeeecCCCccCCcccccc-CCCccEEEEeecCCccccCCCCCCcccccCcce
Q 024132 122 DKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEI 199 (272)
Q Consensus 122 ~~~~~~~~~~s~-~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~-~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~v 199 (272)
+..+.+.+++.. ++.||++||||||+||+|++||+++.||||+++ ++++|||||||||||+|+|.+++.. ...++++
T Consensus 91 ~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~-~~~~~~~ 169 (375)
T 3vmk_A 91 EHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQ-GEGENEE 169 (375)
T ss_dssp TTSCSTTSHHHHHHHHHHHHTTCCEEEEEEECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEE-CCGGGCE
T ss_pred cCCCccccccccchHHHHHHcCCeEEEEEEeccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccc-cCCCCce
Confidence 766666666554 899999999999999999999998889999776 7899999999999999999865321 1224679
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 200 GFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 200 A~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
|+++++|||+++|||+|+|||||++|+||||+|||+|||++++||+++|+|+|++ +|+++|++||++|||||
T Consensus 170 a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~~~glf~~~~~eva~eypdV~~~~~~VD~~am~lv 243 (375)
T 3vmk_A 170 AFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLACSVLWREVVEEVAKDYPDVELEHIYIDNATMQLL 243 (375)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhhhhhHHHHHHHHHHHHCCCceEeeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999889999999999994 89999999999999997
No 5
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=6.1e-71 Score=523.16 Aligned_cols=230 Identities=42% Similarity=0.708 Sum_probs=209.3
Q ss_pred CCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCC
Q 024132 41 PTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120 (272)
Q Consensus 41 ~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~ 120 (272)
|.++++|+||||||||||||+++++||+++.+++|++|+|+++++|+++|+++|+++|++++++|+++|++||||+++|.
T Consensus 1 ~~~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~ 80 (363)
T 1cnz_A 1 MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPK 80 (363)
T ss_dssp CCCCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCCccEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCc
Confidence 45679999999999999999999999999988889999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccc-hhhhhhccCceEEeEEeeecCCCccCCccccccC-CCccEEEEeecCCccccCCCCCCcccccCcc
Q 024132 121 WDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEVA-EGVDLMVVRELTGGIYFGKPRGYGVTEHGEE 198 (272)
Q Consensus 121 ~~~~~~~~~~~s~-~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~-~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~ 198 (272)
|...+++.+++.+ +++||++||||||+||+|++||+.+.||||++++ +++|||||||||||+|+|.+++. ....+++
T Consensus 81 ~~~~~~~~~~e~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~-~~~~~~~ 159 (363)
T 1cnz_A 81 WENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGR-EGSGQYE 159 (363)
T ss_dssp GTTSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEE-ECCGGGC
T ss_pred cccCCcccCcccchHHHHHHHcCCEEEEEEEEecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCcc-ccCCCCc
Confidence 8655555555544 9999999999999999999999987799987655 78999999999999999986432 1122457
Q ss_pred eEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 199 IGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 199 vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+|+++++||++++|||+|+||+||++|+||||+|||+|||++++||+++|+|+|++ +|+++|++||+++||||
T Consensus 160 ~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~~~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv 234 (363)
T 1cnz_A 160 KAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPDVELAHMYIDNATMQLI 234 (363)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccccchhHHHHHHHHHHHCCCceEeeeeHHHHHHHHh
Confidence 89999999999999999999999999999999999999999889999999999984 89999999999999997
No 6
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=1.1e-70 Score=520.22 Aligned_cols=223 Identities=48% Similarity=0.807 Sum_probs=206.9
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+++|+||||||||||||+++++||+++.+++|++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.|..
T Consensus 3 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~ 82 (359)
T 2y3z_A 3 SMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDG 82 (359)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTT
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCcccc
Confidence 48999999999999999999999999988889999999999999999999999999999999999999999999998866
Q ss_pred CCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEe
Q 024132 124 NEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNT 203 (272)
Q Consensus 124 ~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~ 203 (272)
.+++.+++++|+.||++||||||+||+|++||+...||||++.++++|||||||||||+|+|.+++ .++++|+++
T Consensus 83 ~~~~~~~~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~-----~~~~~a~~~ 157 (359)
T 2y3z_A 83 LPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRG-----MSEAEAWNT 157 (359)
T ss_dssp SCGGGCHHHHHHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCE-----ECSSCEECC
T ss_pred CCcccccchhHHHHHHHhCCEEEEEEeeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCc-----CCCceEEEE
Confidence 555545555599999999999999999999999777999876678999999999999999998542 245789999
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 204 EVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 204 ~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
++||++++|||+|+||+||++|+||||+|||+|||++++||+++|+|+|++ +|+++|++||+++||||
T Consensus 158 ~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk~~~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv 227 (359)
T 2y3z_A 158 ERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLV 227 (359)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred EEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccccccHHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHh
Confidence 999999999999999999999999999999999999889999999999984 89999999999999997
No 7
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1.5e-70 Score=519.90 Aligned_cols=226 Identities=45% Similarity=0.741 Sum_probs=207.7
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCC
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKN 124 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~ 124 (272)
|+|+||||||||||||+++++||+++.++++++|+|+++++|+++++++|+++|++++++|+++|++||||+|+|.|...
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 79999999999999999999999999888899999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeE
Q 024132 125 EKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTE 204 (272)
Q Consensus 125 ~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~ 204 (272)
+++.++++++++||++||||||+||++++||+.+.||||++.++++|||||||||||+|+|.+++. ....++++|++++
T Consensus 82 ~~~~~~e~~ll~lRk~ldlyanvRP~~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~-~~~~~~~~a~~~~ 160 (358)
T 1a05_A 82 PPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGL-EVIDGKRRGFNTM 160 (358)
T ss_dssp CGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEE-EEETTEEEEEEEE
T ss_pred CccccchhhHHHHHHHcCCEEEEEEEEecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCcc-ccCCCCceEEEEE
Confidence 555556556999999999999999999999997779999877789999999999999999986432 1123457899999
Q ss_pred eecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 205 VYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 205 ~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+||++++|||+|+||+||++|+||||+|||+|||++++||+++|+|+|++ +|+++|++||+++||||
T Consensus 161 ~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~~~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv 229 (358)
T 1a05_A 161 VYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLI 229 (358)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccccchhHHHHHHHHHHHCCCceEEeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999984 89999999999999997
No 8
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=3.7e-70 Score=517.61 Aligned_cols=224 Identities=44% Similarity=0.678 Sum_probs=207.0
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWD 122 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~ 122 (272)
..++|+||||||||||||+++++||+++.++++++|+|+++++|+++|+++|+++|++|+++|+++|++||||+++|.|.
T Consensus 11 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~ 90 (366)
T 1vlc_A 11 HHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWD 90 (366)
T ss_dssp SEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGT
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccc
Confidence 35799999999999999999999999998888999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCccc-hhhhhhccCceEEeEEeeecCCCccCCccccccC-CCccEEEEeecCCccccCCCCCCcccccCcceE
Q 024132 123 KNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEVA-EGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIG 200 (272)
Q Consensus 123 ~~~~~~~~~s~-~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~-~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA 200 (272)
..+.+.+++++ |+.||++||||||+||+|++||+++.||+|++.. +++|||||||||||+|+|.++ ..++++|
T Consensus 91 ~~~~~~r~~~~~~l~LRk~ldlyaN~RP~~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~-----~~~~~~a 165 (366)
T 1vlc_A 91 DLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPR-----GLDEEKG 165 (366)
T ss_dssp TSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEE-----EECSSCE
T ss_pred cCCcccCcccchhHHHHHHhCCEEEEEEccccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCcc-----ccCCCeE
Confidence 55555566676 9999999999999999999999987789986544 689999999999999999843 3346789
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 201 FNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 201 ~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+++++|||+++|||+|+||+||++|+||||+|||+|||++++||+++|+|+|++ +|+++|++||+++||||
T Consensus 166 ~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlkt~glf~~~~~eva~eypdV~~~~~~VD~~~mqlv 238 (366)
T 1vlc_A 166 FDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLYSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLI 238 (366)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccccchHHHHHHHHHHHHCCCceEEeeeHHHHHHHHh
Confidence 999999999999999999999999999999999999999889999999999994 89999999999999997
No 9
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=8.8e-70 Score=515.18 Aligned_cols=224 Identities=26% Similarity=0.389 Sum_probs=203.2
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecch-hhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGG-SALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKW 121 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~-~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~ 121 (272)
++|+|+||||||||||||+++++||+++.+.+|++|+|+++++|+ ++++++|++||++++++|+++|++||||+++|.|
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 458999999999999999999999999988889999999999999 9999999999999999999999999999999986
Q ss_pred CCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEE
Q 024132 122 DKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGF 201 (272)
Q Consensus 122 ~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~ 201 (272)
.+++.+++|+|+.||++||||||+||+|++||++ ||||++..+++|||||||||||+|+|.++.. ....++++|+
T Consensus 84 --~~~~~~~~s~~l~LR~~ldlyanvRP~~~~pg~~--splk~~~~~~vD~vivREnteG~Y~g~~~~~-~~~~~~~~a~ 158 (364)
T 3flk_A 84 --VPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVP--CALANRKVGDIDFVVVRENTEGEYSSLGGIM-FENTENEIVI 158 (364)
T ss_dssp --BCHHHHHHTTHHHHHHHTTCCEEEEEEECCTTCC--CSBTTCCTTSSEEEEEEECSSBTCCCCEEEE-STTSTTCEEE
T ss_pred --CCCCcCcccchHHHHHHhCCeEEEEEEeccCCcc--cccccccCCCCCEEEEeeCCCceecCcCcee-ccCCCCCEEE
Confidence 2334445678999999999999999999999995 8999888889999999999999999985321 1123468999
Q ss_pred EeEeecHHHHHHHHHHHHHHHHhCC-CcEEEEeCCccccc-hhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 202 NTEVYAAYEVDRIARVAFETARKRH-GKLCSVDKANVLEV-MVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 202 ~~~~iTr~~~eRIar~AFe~A~~r~-kkVT~vhKaNVl~~-s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
++++|||+++|||+|+||+||++|+ ||||+|||+|||+. ++||+++|+|+|++ +|+++|++||+++||||
T Consensus 159 ~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~~vD~~am~lv 232 (364)
T 3flk_A 159 QESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFV 232 (364)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHHHCCCceEEeeEHHHHHHHHH
Confidence 9999999999999999999999985 57999999999995 58999999999994 89999999999999997
No 10
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=5.5e-67 Score=491.90 Aligned_cols=216 Identities=31% Similarity=0.429 Sum_probs=194.2
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+|+|+||||||||||||+++++||+++.. +|+|+++++|+++++++|+++|++++++|+++|++||||+++|.++.
T Consensus 1 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~----~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~ 76 (337)
T 1w0d_A 1 MSKLAIIAGDGIGPEVTAEAVKVLDAVVP----GVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS 76 (337)
T ss_dssp CCEEEEEEESTTHHHHHHHHHHHHHHHST----TCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT
T ss_pred CcEEEEeCCCCcCHHHHHHHHHHHHHhcC----CcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCC
Confidence 37999999999999999999999999975 49999999999999999999999999999999999999999996432
Q ss_pred CCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEe
Q 024132 124 NEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNT 203 (272)
Q Consensus 124 ~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~ 203 (272)
+...+|+++.||++||||||+||++++||++ ||+|+ ..+ +|||||||||||+|+|.++... .+.++++|+++
T Consensus 77 ---~~~~~s~~l~lR~~ldlyan~RP~~~~pg~~--s~l~~-~~~-~DivivREnteg~Y~g~e~~~~-~g~~~~~a~~~ 148 (337)
T 1w0d_A 77 ---GVLERGLLLRLRFELDHHINLRPARLYPGVA--SPLSG-NPG-IDFVVVREGTEGPYTGNGGAIR-VGTPNEVATEV 148 (337)
T ss_dssp ---THHHHHTHHHHHHHTTCCEEEEEEECCTTCC--CSBTT-CCC-CEEEEEEECSCSGGGCCEEEES-TTSTTCEEEEE
T ss_pred ---cccccchHHHHHHHcCCEEEEEEeecCCCCC--CcccC-CCC-CcEEEEecCCCCeecCCcceec-CCCCCCeEEEE
Confidence 2223567999999999999999999999995 89986 344 9999999999999999853211 12245799999
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 204 EVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 204 ~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
++||++++|||+|+||+||++|+||||+|||+|||+ +++||+++|+|+|++ +|+++|++||+++||||
T Consensus 149 ~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva~eyp~i~~~~~~vD~~~mqlv 219 (337)
T 1w0d_A 149 SVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMI 219 (337)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred EEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHHHHCCceEEEEEEHHHHHHHHh
Confidence 999999999999999999999999999999999999 678999999999994 89999999999999997
No 11
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=3.7e-66 Score=485.94 Aligned_cols=205 Identities=26% Similarity=0.461 Sum_probs=192.7
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCC
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKN 124 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~ 124 (272)
|+|+||||||||||||+++++||+++.++++++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 79999999999999999999999999888899999999999999999999999999999999999999999999853
Q ss_pred CCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeE
Q 024132 125 EKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTE 204 (272)
Q Consensus 125 ~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~ 204 (272)
.+++.||++||||||+||+|++||++ +|+ +++|||||||||||+|+|.++ ..++++|++++
T Consensus 79 -------~~~l~lR~~ldlyan~RP~~~~pg~~--~~~-----~~~D~vivREnteg~Y~g~~~-----~~~~~va~~~~ 139 (336)
T 1wpw_A 79 -------DVVVKLRQIYDMYANIRPAKSIPGID--TKY-----GNVDILIVRENTEDLYKGFEH-----IVSDGVAVGMK 139 (336)
T ss_dssp -------HHHHHHHHTTTCCEEEEEEECCTTTC--CSC-----SCCEEEEEEECSSBTTTCCEE-----EEETTEEEEEE
T ss_pred -------chHHHHHHHhCCEEEEEEEeccCCCC--CCC-----CCCcEEEEecCccCeEcCCcc-----ccCCCeEEEEE
Confidence 15899999999999999999999996 565 479999999999999999842 23568999999
Q ss_pred eecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhcCcceeeeEeeecccceec
Q 024132 205 VYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAHVSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 205 ~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~~~v~~~~~~iD~~~m~lv 271 (272)
+||++++|||+|+||+||++|+||||+|||+|||+ +++||+++|+|+|+++|+++|++||+++||||
T Consensus 140 ~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva~~~I~~~~~~vD~~~~~lv 207 (336)
T 1wpw_A 140 IITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLKGKVEYSEMYVDAAAANLV 207 (336)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHHTTTSEEEEEEHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHHHhCceeEEEeHHHHHHHHh
Confidence 99999999999999999999999999999999999 67899999999999999999999999999997
No 12
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=4.3e-66 Score=489.74 Aligned_cols=216 Identities=24% Similarity=0.394 Sum_probs=194.2
Q ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHh-cCeEEEeeccCCC
Q 024132 42 TKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQ-SDAVLLGAIGGYK 120 (272)
Q Consensus 42 ~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~-~daiL~Gavg~p~ 120 (272)
.++|+|+||||||||||||+++++||+++.+.++++|+|.++++|+++|+++|++||++++++|++ +|++||||+++|.
T Consensus 8 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~ 87 (366)
T 3ty4_A 8 TRRIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPT 87 (366)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCC
Confidence 356999999999999999999999999998888999999999999999999999999999999999 6999999999997
Q ss_pred CCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceE
Q 024132 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIG 200 (272)
Q Consensus 121 ~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA 200 (272)
++. ...+|+++.||++||||||+||+|++||+. ..++|||||||||||+|+|.++... ...++++|
T Consensus 88 ~~~----~~~~s~~l~LRk~ldlyaNvRP~~~~~g~~---------~~~vD~vivREnTeG~Y~g~e~~~~-~~~~~~~a 153 (366)
T 3ty4_A 88 HKV----AGYSSPIVALRKKMGLYANVRPVKSLDGAK---------GKPVDLVIVRENTECLYVKEERMVQ-NTPGKRVA 153 (366)
T ss_dssp SCC----TTCCCHHHHHHHHTTCCEEEEEEECCTTCS---------SSCCEEEEEEECSCBGGGCCEEEEE-CCTTCCEE
T ss_pred CCC----cccccchHHHHHHhCCeEEEEEEeccCCCC---------CCCCcEEEEeeCCCCEeecCcceec-cCCCCceE
Confidence 653 123567999999999999999999999973 1369999999999999999864320 12346899
Q ss_pred EEeEeecHHHHHHHHHHHHHHHHhC-------------CCcEEEEeCCcccc-chhhHHHHHHHH---hc--CcceeeeE
Q 024132 201 FNTEVYAAYEVDRIARVAFETARKR-------------HGKLCSVDKANVLE-VMVYMLKQFSLV---AH--VSFTLNVH 261 (272)
Q Consensus 201 ~~~~~iTr~~~eRIar~AFe~A~~r-------------~kkVT~vhKaNVl~-~s~lf~ev~~ev---a~--~~v~~~~~ 261 (272)
+++++|||+++|||+|+||+||++| +||||+|||+|||+ +++||+++|+|+ ++ ++|+++|+
T Consensus 154 ~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ev~~~a~eypdV~~~~~ 233 (366)
T 3ty4_A 154 EAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQ 233 (366)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHHHGGGCGGGTTSEEEEE
T ss_pred EEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHHHHHhHhhCCCceEEee
Confidence 9999999999999999999999998 78999999999999 458999999999 77 48999999
Q ss_pred eeecccceec
Q 024132 262 VLDCEKVILL 271 (272)
Q Consensus 262 ~iD~~~m~lv 271 (272)
+||+++||||
T Consensus 234 ~VD~~am~lv 243 (366)
T 3ty4_A 234 IVDSMVYRLF 243 (366)
T ss_dssp EHHHHHHHHH
T ss_pred eHHHHHHHHH
Confidence 9999999997
No 13
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=9.2e-66 Score=482.71 Aligned_cols=206 Identities=31% Similarity=0.435 Sum_probs=190.2
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
.|+|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.++.
T Consensus 1 ~~~I~vipGDGIGpEv~~~a~~vl~a~----~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~ 76 (333)
T 1x0l_A 1 AYRICLIEGDGIGHEVIPAARRVLEAT----GLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV 76 (333)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHTT----TCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHHHc----CCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC
Confidence 379999999999999999999999998 5899999999999999999999999999999999999999999997643
Q ss_pred CCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEe
Q 024132 124 NEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNT 203 (272)
Q Consensus 124 ~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~ 203 (272)
..++|+++.||++||||||+||+|++| ++ ||+ +++|||||||||||+|+|.++ . ++++|+++
T Consensus 77 ----~~~~s~~l~lR~~ldlyan~RP~~~~p-~~--s~~-----~~vD~vivREnteg~Y~g~~~-----~-~~~~a~~~ 138 (333)
T 1x0l_A 77 ----PGFFGAIRYLRRRLDLYANVRPAKSRP-VP--GSR-----PGVDLVIVRENTEGLYVEQER-----R-YLDVAIAD 138 (333)
T ss_dssp ----TTCCCHHHHHHHHTTCCEEEEEEECCS-ST--TCC-----SSCEEEEEEECGGGTCCCCEE-----E-ETTEEEEE
T ss_pred ----cCccChhHHHHHHcCCEEEEEEEeecc-CC--CCC-----CCCCEEEEecCccceeccccc-----c-CCCeEEEE
Confidence 234677999999999999999999999 84 675 479999999999999999842 2 46799999
Q ss_pred EeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 204 EVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 204 ~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
++||++++|||+|+||+||++| +||||+|||+|||+ +++||+++|+|+|++ +|+++|++||+++||||
T Consensus 139 ~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv 210 (333)
T 1x0l_A 139 AVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLV 210 (333)
T ss_dssp EEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHh
Confidence 9999999999999999999999 78999999999999 678999999999994 89999999999999997
No 14
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.2e-64 Score=486.55 Aligned_cols=218 Identities=26% Similarity=0.314 Sum_probs=196.0
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
.++|++||||||||||++++++||+++.++++++|+|+++++|.++++++|+++|++|+++|+++|++||||+++|....
T Consensus 27 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~~~ 106 (412)
T 2iv0_A 27 NPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGG 106 (412)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSSS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCCcc
Confidence 47999999999999999999999999988888999999999999999999999999999999999999999999985321
Q ss_pred CCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccc----------
Q 024132 124 NEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVT---------- 193 (272)
Q Consensus 124 ~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~---------- 193 (272)
.+|.|+.||++||||||+||++++||++ ||||+ .+++|||||||||||+|+|.++.....
T Consensus 107 ------~~s~~l~LR~~Ldlyan~RPv~~~~g~~--splk~--~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~ 176 (412)
T 2iv0_A 107 ------YRSLNVTIRQVLDLYANVRPVYYLKGVP--SPIKH--PEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLK 176 (412)
T ss_dssp ------SSHHHHHHHHHTTCCEEEEEEECCTTSC--CSBSC--GGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHH
T ss_pred ------ccChhHHHHHHcCCeEEEEEEEecCCCC--CCCCC--cCCCCEEEEecCCCCEeCCcccccCCccccchhhccc
Confidence 2467999999999999999999999996 89975 358999999999999999986432110
Q ss_pred -----ccCcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc---Cc--------
Q 024132 194 -----EHGEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH---VS-------- 255 (272)
Q Consensus 194 -----~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~---~~-------- 255 (272)
...+++|+++++||+++++||+|+||+||++| +||||+|||+|||+ +++||+++|+|+|+ ++
T Consensus 177 ~~~~~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~ 256 (412)
T 2iv0_A 177 NEFGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDEL 256 (412)
T ss_dssp HHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHHHH
T ss_pred ccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhCCCccccccch
Confidence 01457899999999999999999999999998 67899999999999 56899999999997 36
Q ss_pred ------------ceeeeEeeecccceec
Q 024132 256 ------------FTLNVHVLDCEKVILL 271 (272)
Q Consensus 256 ------------v~~~~~~iD~~~m~lv 271 (272)
|+++|++||+++||||
T Consensus 257 ~~~~~~~~~~~~I~~~~~~vD~~~mqlv 284 (412)
T 2iv0_A 257 WDKYGGKQPEGKIVVKDRIADNMFQQIL 284 (412)
T ss_dssp HHHHTTCCCTTCEEEEEEEGGGHHHHHH
T ss_pred hhhccccccCCeEEEEEEEHHHHHHHHh
Confidence 9999999999999997
No 15
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=3.9e-65 Score=481.62 Aligned_cols=210 Identities=22% Similarity=0.337 Sum_probs=190.7
Q ss_pred CCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccC
Q 024132 39 APPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGG 118 (272)
Q Consensus 39 ~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~ 118 (272)
+.++++++|++||||||||||++++++||+++ +++|+|+++++|+++ +++|+++|++++++|+++|++||||+++
T Consensus 16 ~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~----~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~ 90 (354)
T 3blx_B 16 NPSTGKYTVSFIEGDGIGPEISKSVKKIFSAA----NVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLAT 90 (354)
T ss_dssp CTTTSCEECBCCCCSTTHHHHHHHHHHHHHTT----TCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCC
T ss_pred hhcCCceEEEEECCCCcCHHHHHHHHHHHHHc----CCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccC
Confidence 34556799999999999999999999999998 589999999999999 9999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcc
Q 024132 119 YKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEE 198 (272)
Q Consensus 119 p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~ 198 (272)
|.+. .++|+++.||++||||||+||++++||++ ||+ +++|||||||||||+|+|.+ +...++
T Consensus 91 P~~~------~~~s~~l~lR~~ldlyan~RP~~~~pg~~--s~~-----~~vD~vivREnteg~Y~g~e-----~~~~~~ 152 (354)
T 3blx_B 91 PIGK------GHRSLNLTLRKTFGLFANVRPAKSIEGFK--TTY-----ENVDLVLIRENTEGEYSGIE-----HIVCPG 152 (354)
T ss_dssp C----------CCCHHHHHHHHHTEEEEEEEEECCTTCC--CSS-----CSCEEEEEEECSSEEEEEEE-----EECSTT
T ss_pred CCCc------cccCchHHHHHHcCCEEEEEEecccCCCC--CCC-----CCccEEEEecCcCCcccCCc-----ccccCC
Confidence 9643 24577999999999999999999999996 665 47999999999999999984 333467
Q ss_pred eEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 199 IGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 199 vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+|+++++||++++|||+|+||+||++| +||||+|||+|||+ +++||+++|+|+|++ +|+++|++||+++||||
T Consensus 153 ~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~vD~~~m~lv 229 (354)
T 3blx_B 153 VVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVV 229 (354)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHH
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHh
Confidence 999999999999999999999999998 78999999999999 568999999999994 89999999999999997
No 16
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=1.7e-64 Score=487.36 Aligned_cols=219 Identities=20% Similarity=0.246 Sum_probs=192.3
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhh-cccC--CeeEEEEEecchhhhhhcCC--CCCHHHHHHHHhcCeEEEeecc
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAG-SLEG--IEFAFQEMPMGGSALDLVGV--PLPEETLAAAKQSDAVLLGAIG 117 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~-~~~g--~~ie~~~~~~G~~~~~~~G~--~lp~etl~~ik~~daiL~Gavg 117 (272)
..++|+||||||||||||+++++||+++. +.+| ++|+|+++++|.++++++|+ +||++|+++|+++|++||||++
T Consensus 35 ~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~ 114 (427)
T 3dms_A 35 DQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLT 114 (427)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCC
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCC
Confidence 34899999999999999999999999965 4454 79999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcc-----
Q 024132 118 GYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGV----- 192 (272)
Q Consensus 118 ~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~----- 192 (272)
+|.+.. .+|.|+.||++||||||+||||++||++ ||||+ .+++|||||||||||+|+|.++....
T Consensus 115 tP~~~~------~~s~~l~LRk~LdLyaNlRPv~~~pg~~--splk~--~~~vDivIvREnTeG~Y~G~e~~~~~~~~~~ 184 (427)
T 3dms_A 115 TPVGGG------IRSLNVALRQELDLYVCLRPIQYFKGVP--SPVRE--PEKTNMVIFRENSEDIYAGIEWAAESEQAKK 184 (427)
T ss_dssp CCC----------CCHHHHHHHHTTCCEEEEEECCCTTCC--CSSSC--GGGCCEEEEEECSSGGGGCCEECTTCHHHHH
T ss_pred CCCCcc------cCChhHHHHHHhCCeEEEEEeecCCCCC--CCCCC--CCCceEEEEEECCCCEecCcccccCCccccc
Confidence 986431 2367999999999999999999999995 89985 46899999999999999998632210
Q ss_pred -------------cccCcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC---
Q 024132 193 -------------TEHGEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV--- 254 (272)
Q Consensus 193 -------------~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--- 254 (272)
...++++|+++++|||+++|||+|+||+||++| +||||+|||+|||+ +++||+++|+|+|++
T Consensus 185 ~~~~~~~~~g~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva~~eyp 264 (427)
T 3dms_A 185 VIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFG 264 (427)
T ss_dssp HHHHHHHTSCCCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCC
Confidence 001357899999999999999999999999998 68999999999999 679999999999972
Q ss_pred -------------------cceeeeEeeecccceec
Q 024132 255 -------------------SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 -------------------~v~~~~~~iD~~~m~lv 271 (272)
+|+++|++||+++||||
T Consensus 265 dv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv 300 (427)
T 3dms_A 265 AELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQIL 300 (427)
T ss_dssp CEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred ccccccccccccccccccCceEEEEeeHHHHHHHHh
Confidence 38899999999999997
No 17
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=3.1e-64 Score=483.54 Aligned_cols=219 Identities=28% Similarity=0.343 Sum_probs=191.4
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcc-cC--CeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCC
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSL-EG--IEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGY 119 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~-~g--~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p 119 (272)
+.++|+||||||||||||+++++||+++.++ +| ++|+|+++++|.++++++|+++|++|+++|+++|++||||+++|
T Consensus 23 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP 102 (409)
T 2e0c_A 23 NKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETP 102 (409)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC--
T ss_pred CCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCC
Confidence 3479999999999999999999999999765 54 89999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccc------
Q 024132 120 KWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVT------ 193 (272)
Q Consensus 120 ~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~------ 193 (272)
.... .+|.|+.||+.||||||+||++++||++ ||||+ .+++|||||||||||+|+|.++.....
T Consensus 103 ~~~~------~~s~~l~LR~~LdlyanvRPv~~~~g~~--splk~--~~~vDivIvREnteg~Y~g~e~~~~~~~~~~v~ 172 (409)
T 2e0c_A 103 IGKG------WKSVNVAIRLMLDLYANIRPVKYIEGLE--SPLKH--PEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIR 172 (409)
T ss_dssp ------------CHHHHHHHHTTCCEEEEEEECCTTCC--CSBSC--CTTCEEEEEEECSSGGGGCCEECTTSHHHHHHH
T ss_pred Cccc------ccChhHHHHHHcCCEEEEEEEeccCCCC--CCCCC--ccCCcEEEEEcCCCCEeCCcccccCCCcccchh
Confidence 5321 2366999999999999999999999996 89975 358999999999999999986432110
Q ss_pred ---------ccCcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc---Cc----
Q 024132 194 ---------EHGEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH---VS---- 255 (272)
Q Consensus 194 ---------~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~---~~---- 255 (272)
...+++|+++++||+++++||+|+||+||++| +|+||+|||+|||+ +++||+++|+|+|+ ++
T Consensus 173 ~f~~~~~~~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~ 252 (409)
T 2e0c_A 173 DFLRKELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVT 252 (409)
T ss_dssp HHHHHHSCCCCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEE
T ss_pred hccchhccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHhCCCcccc
Confidence 11457999999999999999999999999998 67899999999999 55899999999997 36
Q ss_pred -------------ceeeeEeeecccceec
Q 024132 256 -------------FTLNVHVLDCEKVILL 271 (272)
Q Consensus 256 -------------v~~~~~~iD~~~m~lv 271 (272)
|+++|++||+++||||
T Consensus 253 ~~~~~~~~~~~~~I~~~~~~vD~~~mqlv 281 (409)
T 2e0c_A 253 EEEINQGKPDQGKIILNDRIADNMFQQII 281 (409)
T ss_dssp HHHHTTTCCCTTSEEEEEEEHHHHHHHHH
T ss_pred ccccccccccCCeEEEEEEEHHHHHHHHh
Confidence 9999999999999997
No 18
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=2.1e-63 Score=479.79 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=194.7
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcc-cC--CeeEEEEEecchhhhhhcCC--CCCHHHHHHHHhcCeEEEeecc
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSL-EG--IEFAFQEMPMGGSALDLVGV--PLPEETLAAAKQSDAVLLGAIG 117 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~-~g--~~ie~~~~~~G~~~~~~~G~--~lp~etl~~ik~~daiL~Gavg 117 (272)
+.++|++||||||||||++++++||+++.++ +| ++|+|+++++|.++++++|+ +||++++++|+++|++||||++
T Consensus 25 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~ 104 (429)
T 2d4v_A 25 DQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLE 104 (429)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCcc
Confidence 3579999999999999999999999999865 44 89999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccc----
Q 024132 118 GYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVT---- 193 (272)
Q Consensus 118 ~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~---- 193 (272)
+|... . .+|.|+.||+.||||||+||+|++||++ ||||+ .+++|||||||||||+|+|.++.....
T Consensus 105 tP~~~----~--~~s~~l~LRk~LdLyanvRPv~~~~gv~--splk~--~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~ 174 (429)
T 2d4v_A 105 TPVGG----G--IRSLNVAMRQDLDLYVCLRPVRYFEGTP--SPMRH--PEKVDMVIFRENSEDIYAGIEWPAGSPEAEK 174 (429)
T ss_dssp CCSSS----S--SCCHHHHHHHHTTCCEEEEEEECCTTCC--CSBSC--GGGCEEEEEEECSCGGGGCCEECTTCHHHHH
T ss_pred CCCcc----c--ccChhHHHHHHcCCEEEEEEEEecCCCC--CCCCC--cCCCCEEEEEeCCCCeecCcccccCCccccc
Confidence 98432 1 2466999999999999999999999996 89975 358999999999999999986432110
Q ss_pred --------------ccCcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc---C
Q 024132 194 --------------EHGEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH---V 254 (272)
Q Consensus 194 --------------~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~---~ 254 (272)
..++++|+++++||++++|||+|+||+||++| +||||+|||+|||+ +++||+++|+|+|+ +
T Consensus 175 v~~~~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eyp 254 (429)
T 2d4v_A 175 IIRFLREEMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFA 254 (429)
T ss_dssp HHHHHHHTSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHST
T ss_pred ceeccccccccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCC
Confidence 01357999999999999999999999999998 67899999999999 56899999999997 3
Q ss_pred c--------------------------------ceeeeEeeecccceec
Q 024132 255 S--------------------------------FTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 ~--------------------------------v~~~~~~iD~~~m~lv 271 (272)
+ |+++|++||+++||||
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv 303 (429)
T 2d4v_A 255 GRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQIL 303 (429)
T ss_dssp TTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred CccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHh
Confidence 5 8899999999999997
No 19
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=2.1e-63 Score=480.52 Aligned_cols=217 Identities=23% Similarity=0.293 Sum_probs=193.9
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcc-cC--CeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSL-EG--IEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~-~g--~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~ 120 (272)
.++|+||||||||||||+++++||+++.++ +| ++|+|+++++|.++++++|++||++|+++|+++|++||||+++|.
T Consensus 35 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~ 114 (435)
T 1tyo_A 35 NPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPV 114 (435)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCT
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCCC
Confidence 479999999999999999999999999765 54 899999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccc-------
Q 024132 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVT------- 193 (272)
Q Consensus 121 ~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~------- 193 (272)
... .+|+|+.||++||||||+||++++ |++ ||||+ ++++|||||||||||+|+|.++.....
T Consensus 115 ~~~------~~s~~l~LRk~LdlyanlRPv~~~-gv~--splk~--~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~ 183 (435)
T 1tyo_A 115 GTG------YRSLNVAIRQALDLYANIRPVRYY-GQP--APHKY--ADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRR 183 (435)
T ss_dssp TSC------TTHHHHHHHHHHTCCEEEEEEECC-SCC--CSBTT--GGGCEEEEEEECSSSGGGCCEECTTSHHHHHHHH
T ss_pred ccc------ccChhHHHHHHcCCEEEeEEEEec-CCC--CCCCC--cCCCcEEEEecCCCCeecccccccCCccccceec
Confidence 321 246799999999999999999999 985 89975 358999999999999999986432110
Q ss_pred --------ccCcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc---Cc-----
Q 024132 194 --------EHGEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH---VS----- 255 (272)
Q Consensus 194 --------~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~---~~----- 255 (272)
..++++|+++++||+++++||+|+||+||++| +|+||+|||+|||+ +++||+++|+|+|+ ++
T Consensus 184 ~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~e 263 (435)
T 1tyo_A 184 FLAEEFGISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTE 263 (435)
T ss_dssp HHHHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEH
T ss_pred cchhhccccCCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCccccc
Confidence 11457999999999999999999999999998 78999999999999 56899999999997 36
Q ss_pred ---------------ceeeeEeeecccceec
Q 024132 256 ---------------FTLNVHVLDCEKVILL 271 (272)
Q Consensus 256 ---------------v~~~~~~iD~~~m~lv 271 (272)
|+++|++||+++||||
T Consensus 264 ~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv 294 (435)
T 1tyo_A 264 QEVQEKYGGVRPEGKILVNDRIADNMLQQII 294 (435)
T ss_dssp HHHHHHSTTCCCTTCEEEEEEEHHHHHHHHH
T ss_pred ccccccccccccCCeEEEEeeeHHHHHHHHh
Confidence 8999999999999997
No 20
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=7.9e-63 Score=480.55 Aligned_cols=208 Identities=25% Similarity=0.389 Sum_probs=192.3
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcC-CCCCHHHHHHHHhcCeEEEeeccCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVG-VPLPEETLAAAKQSDAVLLGAIGGYKWD 122 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G-~~lp~etl~~ik~~daiL~Gavg~p~~~ 122 (272)
+++|++||||||||||++++++||+++ +++|+|+++++|+++|+++| +++|++++++|+++|++||||+++|.+.
T Consensus 19 ~~~IavipGDGIGpEV~~~a~~VL~a~----~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGavgtP~~~ 94 (496)
T 2d1c_A 19 RKLITVIPGDGIGPECVEATLKVLEAA----KAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGY 94 (496)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHHT----TCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCSSS
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHhc----CCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCccCCCcc
Confidence 589999999999999999999999998 58999999999999999999 9999999999999999999999999642
Q ss_pred CCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEE
Q 024132 123 KNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFN 202 (272)
Q Consensus 123 ~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~ 202 (272)
..+|+|+.||++||||||+||+|++||++ ||+|. +++|||||||||||+|+|.+ +..++++|++
T Consensus 95 ------~~~s~~l~LRk~LdLyaNlRP~k~~pgl~--splk~---~~vD~vIVREnTEG~Y~G~e-----~~~~~~va~~ 158 (496)
T 2d1c_A 95 ------GEKSANVTLRKLFETYANVRPVREFPNVP--TPYAG---RGIDLVVVRENVEDLYAGIE-----HMQTPSVAQT 158 (496)
T ss_dssp ------SSCCHHHHHHHHTTCCEEEEEEECBTTBC--CTTTT---SCCEEEEEEECSSBGGGCCE-----EEEETTEEEE
T ss_pred ------cccChHHHHHHHhCCEEEEEEEeecCCCC--ccccC---CCccEEEEeeCcCceEecee-----EecCCCeEEE
Confidence 12467999999999999999999999996 78872 58999999999999999984 3335689999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132 203 TEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 203 ~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv 271 (272)
+++||++++|||+|+||+||++| +||||+|||+|||+ +++||+++|+|+|++ +|+++|++||+++||||
T Consensus 159 ~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~eYPdI~~e~~~VD~~amqLV 231 (496)
T 2d1c_A 159 LKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLV 231 (496)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHHHCCCceEEEEeHHHHHHHHh
Confidence 99999999999999999999999 78999999999999 558999999999984 89999999999999997
No 21
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=4.4e-63 Score=477.15 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=194.6
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcc-cC--CeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSL-EG--IEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~-~g--~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~ 120 (272)
.++|++||||||||||++++++||+++.++ +| ++|+|+++++|.++++++|+++|++|+++|+++|++||||+++|.
T Consensus 19 ~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP~ 98 (423)
T 1hqs_A 19 NPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPV 98 (423)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCC
Confidence 479999999999999999999999999876 44 899999999999999999999999999999999999999999984
Q ss_pred CCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccc-------
Q 024132 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVT------- 193 (272)
Q Consensus 121 ~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~------- 193 (272)
.. . .+|+|+.||+.||||||+||++++||++ ||||+ ++++|||||||||||+|+|.++.....
T Consensus 99 ~~----~--~~s~nl~LRk~LdlyanvRPv~~~pg~~--splk~--~~~vDivIvREnteg~Y~G~e~~~g~~~~~~v~~ 168 (423)
T 1hqs_A 99 GG----G--IRSLNVALRQELDLFVCLRPVRYFTGVP--SPVKR--PEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLIS 168 (423)
T ss_dssp SS----S--SCCHHHHHHHHTTCCEEEEEEECCTTCC--CSBSC--GGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHH
T ss_pred Cc----C--cCChhHHHHHHcCCEEEEEEEeccCCCC--CCCCC--CCCCcEEEEecCCCCeecccccccCCccccceec
Confidence 22 1 2466999999999999999999999995 89975 358999999999999999986421100
Q ss_pred -----------ccCcceEEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHhc---Cc--
Q 024132 194 -----------EHGEEIGFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVAH---VS-- 255 (272)
Q Consensus 194 -----------~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva~---~~-- 255 (272)
..++++|+++++||++++|||+|+||+||++| +|+||+|||+|||+ +++||+++|+|+|+ ++
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~ 248 (423)
T 1hqs_A 169 FLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKV 248 (423)
T ss_dssp HHHHHSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGGE
T ss_pred cccccccccccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcc
Confidence 01457999999999999999999999999998 78999999999999 56899999999997 36
Q ss_pred ------------------------------ceeeeEeeecccceec
Q 024132 256 ------------------------------FTLNVHVLDCEKVILL 271 (272)
Q Consensus 256 ------------------------------v~~~~~~iD~~~m~lv 271 (272)
|+++|++||+++||||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv 294 (423)
T 1hqs_A 249 FTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQIL 294 (423)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred cchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHh
Confidence 8899999999999997
No 22
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=1.6e-63 Score=469.83 Aligned_cols=207 Identities=20% Similarity=0.286 Sum_probs=187.0
Q ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCC
Q 024132 40 PPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGY 119 (272)
Q Consensus 40 ~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p 119 (272)
.++++++|+||||||||||||+++++||+++ +++|+|+++++|+ ++|+++|++++++|+++|++||||+++|
T Consensus 13 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~----~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P 84 (349)
T 3blx_A 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAE----NIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTP 84 (349)
T ss_dssp CCCCCEEEEEEEESHHHHHHHHHHHHHHHHT----TCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSH
T ss_pred ccCCceEEEEECCCCcCHHHHHHHHHHHHHc----CCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCC
Confidence 3566799999999999999999999999999 4899999999997 7999999999999999999999999998
Q ss_pred CCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcce
Q 024132 120 KWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEI 199 (272)
Q Consensus 120 ~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~v 199 (272)
... + ..+|+|+.||++||||||+||++++||++ ||+ +++|||||||||||+|+|.+ +...+++
T Consensus 85 ~~~--~---~~~s~~l~lR~~ldlyan~RP~~~~pg~~--~~~-----~~vD~vivREnteg~Y~g~e-----~~~~~gv 147 (349)
T 3blx_A 85 ADQ--T---GHGSLNVALRKQLDIYANVALFKSLKGVK--TRI-----PDIDLIVIRENTEGEFSGLE-----HESVPGV 147 (349)
T ss_dssp HHH--H---TCHHHHHHHHHTSCEEEEEEEEECCTTCC--CSS-----CSCEEEEEEECSSGGGGCEE-----EECSTTE
T ss_pred CCC--C---CccCchHHHHHHcCCEEEEEEEeccCCCC--CCC-----CCcCEEEEecCCCCcEeCCc-----eeccCCe
Confidence 320 1 13567999999999999999999999996 565 47999999999999999984 2334568
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhC-CCcEEEEeCCcccc-chhhHHHHHHHHh-c--CcceeeeEeeecccceec
Q 024132 200 GFNTEVYAAYEVDRIARVAFETARKR-HGKLCSVDKANVLE-VMVYMLKQFSLVA-H--VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 200 A~~~~~iTr~~~eRIar~AFe~A~~r-~kkVT~vhKaNVl~-~s~lf~ev~~eva-~--~~v~~~~~~iD~~~m~lv 271 (272)
++++++||++++|||+|+||+||++| +||||+|||+|||+ +++||+++|+|+| + ++|+++|++||+++||||
T Consensus 148 a~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv 224 (349)
T 3blx_A 148 VESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAV 224 (349)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHH
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHh
Confidence 99999999999999999999999998 78999999999999 5689999999999 5 589999999999999997
No 23
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.8e-59 Score=452.49 Aligned_cols=230 Identities=13% Similarity=0.051 Sum_probs=187.9
Q ss_pred ccccccccccCCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHh
Q 024132 28 PARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQ 107 (272)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~ 107 (272)
...+||.|..+-- +-+++|++||||||||||++++++||++. +++|+|+++++|.++++++|+++|++++++|++
T Consensus 15 ~~~~~~~~~~~~i-~~~~~I~vipGDGIGpEI~~~~~~vL~~~----~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~ 89 (427)
T 3us8_A 15 TENLYFQSMMAKI-KVANPVVELDGDEMTRIIWQFIKDKLIHP----YLDLDLEYYDLGVENRDATDDQVTIDAANAIKK 89 (427)
T ss_dssp ----------CCE-ECCSCEEEEECCHHHHHHHHHHHHHHTTT----TEECCEEEEECCHHHHHHTTTHHHHHHHHHHHH
T ss_pred cceEEeecccccc-cccceEEEEcCCcccHHHHHHHHHHHHhc----CCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHH
Confidence 3457787654321 12579999999999999999999999874 689999999999999999999999999999999
Q ss_pred cCeEEEeeccCCCCCC-----CCCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCcc
Q 024132 108 SDAVLLGAIGGYKWDK-----NEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGI 182 (272)
Q Consensus 108 ~daiL~Gavg~p~~~~-----~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~ 182 (272)
+|++||||+++|.++. .++. ..|+|++||+.||||||+||+ .+++++ +|+++ .++|||||||||||+
T Consensus 90 ~da~LkGav~tP~~~~~~e~~l~~~--~~s~n~~LRk~LdlyanvRPv-~~~~ip--~~~~~---~~~DivIvREnteg~ 161 (427)
T 3us8_A 90 HGVGVKCATITPDEGRVEEFKLKKM--WKSPNGTIRNILGGVIFREPI-ICKNVP--RLVPG---WTKPIIVGRHAFGDQ 161 (427)
T ss_dssp HSEEEECCCCCCCHHHHHHHTCSSC--CCCHHHHHHHHHCSEEEEEEC-CCTTSC--CSSTT---CCSCEEEEEECSSGG
T ss_pred CCEEEECCccCCCcccccccccccc--ccCchHHHHHHhCCeEEecce-eccCCC--CCCCC---CCCCEEEEEeCCCCc
Confidence 9999999999998631 1112 236689999999999999999 888886 56653 369999999999999
Q ss_pred ccCCCCCCcccc---------------------cCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-c
Q 024132 183 YFGKPRGYGVTE---------------------HGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-V 240 (272)
Q Consensus 183 Y~g~~~~~~~~~---------------------~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~ 240 (272)
|+|.++.....+ .+++++ +..+||++++|||+|+||+||++|+++||+|||+|||+ +
T Consensus 162 Y~g~e~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~t 240 (427)
T 3us8_A 162 YRATDFKFPGKGKLSIKFVGEDGQTIEHDVYDAPGAGVA-LAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAY 240 (427)
T ss_dssp GGCEEEEECSSEEEEEEEEETTSCEEEEEEEEESSCEEE-EEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTH
T ss_pred cCCceeEEecCCcceeeeeccccccccccccccCCCcEE-EEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhh
Confidence 999854321000 124566 67889999999999999999999999999999999999 6
Q ss_pred hhhHHHHHHHHhc---------CcceeeeEeeecccceec
Q 024132 241 MVYMLKQFSLVAH---------VSFTLNVHVLDCEKVILL 271 (272)
Q Consensus 241 s~lf~ev~~eva~---------~~v~~~~~~iD~~~m~lv 271 (272)
++||+++|+|+|+ ++|+++|++||+++||||
T Consensus 241 dglfr~~~~eva~~eYp~~~~~~~I~~~~~~VD~~~mqlv 280 (427)
T 3us8_A 241 DGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLIDDMVASAL 280 (427)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhCccccCCCCeEEEEEEHHHHHHHHh
Confidence 7999999999998 289999999999999997
No 24
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=6.5e-59 Score=446.28 Aligned_cols=218 Identities=14% Similarity=0.076 Sum_probs=186.6
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+++|++||||||||||+++++++|+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..
T Consensus 6 ~~~i~~i~GDgig~ei~~~~~~vl~~~----~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 6 KTPLVELDGDEMTRVLWPLIKDKLLLP----FIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTT----TBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ecceEEecCCCccHHHHHHHHHHHHhC----CCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 478999999999999999999999988 4899999999999999999999999999999999999999999997431
Q ss_pred CCCC-C--CCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcc--------
Q 024132 124 NEKH-L--KPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGV-------- 192 (272)
Q Consensus 124 ~~~~-~--~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~-------- 192 (272)
.+.+ . ..+|+|++||++||||||+||++ +|+++ +|+++ .++|||||||||||+|+|.++....
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~--~~~~~---~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~ 155 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIM-VKNIK--PSVRS---WQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVV 155 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECC-CTTCC--CSBTT---CCSCCEEEEECSCGGGGCEEEEETTCEEEEEEE
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEE-cCCCC--CCCCC---CCCCeEEEeccCCCcccCcceeeccCCcceeee
Confidence 1111 1 12567999999999999999999 79996 66654 4699999999999999986432100
Q ss_pred ---ccc---------CcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHh-c--Cc-
Q 024132 193 ---TEH---------GEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVA-H--VS- 255 (272)
Q Consensus 193 ---~~~---------~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva-~--~~- 255 (272)
.+. ..+.+.+..+||++++|||+|+||+||++|++|||+|||+|||+ +++||+++|+|+| + ++
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~ 235 (402)
T 2uxq_A 156 TDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEK 235 (402)
T ss_dssp ECTTSCEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHH
T ss_pred eccCCccccccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCc
Confidence 000 12456666689999999999999999999999999999999999 5689999999999 4 47
Q ss_pred -----ceeeeEeeecccceec
Q 024132 256 -----FTLNVHVLDCEKVILL 271 (272)
Q Consensus 256 -----v~~~~~~iD~~~m~lv 271 (272)
|+++|++||+++||||
T Consensus 236 ~~~~~I~~~~~~vD~~~mqlv 256 (402)
T 2uxq_A 236 FAAAGIEYFYTLIDDVVARMM 256 (402)
T ss_dssp HHHHTCCEEEEEHHHHHHHHT
T ss_pred ccCCeEEEEEEEHHHHHHHHc
Confidence 9999999999999998
No 25
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=8.7e-58 Score=439.75 Aligned_cols=218 Identities=13% Similarity=0.031 Sum_probs=184.8
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..
T Consensus 8 ~~~i~~l~GDgiGpei~~~~~~vl~~~----~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~~ 83 (413)
T 1lwd_A 8 AKPVVEMDGDEMTRIIWQFIKEKLILP----HVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEAR 83 (413)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHTTTT----TEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred cccEEEecCCChhHHHHHHHHHHHHhC----CCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCccc
Confidence 368999999999999999999999743 5899999999999999999999999999999999999999999997532
Q ss_pred CCCC-CC--CccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcc--------
Q 024132 124 NEKH-LK--PETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGV-------- 192 (272)
Q Consensus 124 ~~~~-~~--~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~-------- 192 (272)
.+.+ .+ .+|+|+.||+.||||||+||++. ++++ +|+++ .++||+||||||||+|+|.+.....
T Consensus 84 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~-~~~~--~~~~~---~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~ 157 (413)
T 1lwd_A 84 VEEFKLKKMWKSPNGTIRNILGGTVFREPIIC-KNIP--RLVPG---WTKPITIGRHAHGDQYKATDFVVDRAGTFKIVF 157 (413)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCSEEEEEECCC-TTSC--CSSTT---CCSCEEEEEECSSGGGGCEEEEECSSEEEEEEE
T ss_pred CccccccccccCccHHHHHhcCCEEEEeeeec-cCCC--CCCCC---CCCceEEEecccCCccCCceeEeccCCcceeeE
Confidence 1111 11 23679999999999999999986 8885 56653 3699999999999999976321100
Q ss_pred ---cc----------cCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHh-c--Cc
Q 024132 193 ---TE----------HGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVA-H--VS 255 (272)
Q Consensus 193 ---~~----------~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva-~--~~ 255 (272)
.+ ...+.+.++.+||+++++||+|+||+||++|+++||+|||+|||+ +++||+++|+|+| + ++
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd 237 (413)
T 1lwd_A 158 TPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKT 237 (413)
T ss_dssp EETTCCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHH
T ss_pred eccCCcccccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCC
Confidence 00 013467777799999999999999999999999999999999999 5689999999999 4 46
Q ss_pred ------ceeeeEeeecccceec
Q 024132 256 ------FTLNVHVLDCEKVILL 271 (272)
Q Consensus 256 ------v~~~~~~iD~~~m~lv 271 (272)
|+++|++||+++||||
T Consensus 238 ~~~~~~I~~~~~~VD~~~mqlv 259 (413)
T 1lwd_A 238 DFDKYKIWYEHRLIDDMVAQVL 259 (413)
T ss_dssp HHHHTTCCEEEEEHHHHHHHHH
T ss_pred cccCCeEEEEEEEHHHHHHHHh
Confidence 9999999999999997
No 26
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-57 Score=433.49 Aligned_cols=218 Identities=14% Similarity=0.075 Sum_probs=184.9
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..
T Consensus 7 ~~~I~~l~GDgiG~ei~~~v~~~l~~~----~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~~ 82 (399)
T 1zor_A 7 KNPIVELDGDEMARVMWKMIKEKLILP----YLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAER 82 (399)
T ss_dssp CSCEEEEECCHHHHHHHHHHHHHHTTT----TEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred cccEEEecCCcccHHHHHHHHHHHHhC----CCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCccc
Confidence 367999999999999999999999866 4899999999999999999999999999999999999999999996421
Q ss_pred CCCC-C--CCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccc-------
Q 024132 124 NEKH-L--KPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVT------- 193 (272)
Q Consensus 124 ~~~~-~--~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~------- 193 (272)
.+.+ . ..+|+|++||++||||||+||++ +++++ +|+++ ..+||+|+||||||+|.|.+.....+
T Consensus 83 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~--~~~~~---~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y 156 (399)
T 1zor_A 83 VKEYNLKKAWKSPNATIRAYLDGTVFRKPIM-VKNVP--PLVKR---WKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVV 156 (399)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHTCEEEEEECC-BTTBC--CSBTT---CCSCCEEEECCSSGGGGCEEEEECSSEEEEEEE
T ss_pred CccccccccccCchHHHHHHhCCEEEEEEee-cCCCC--CcccC---cCccceeeecccCCCcCCceeEecCCCcceeeE
Confidence 1111 1 12467999999999999999999 99996 56653 35999999999999999874210000
Q ss_pred c--c---------CcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhc----C---
Q 024132 194 E--H---------GEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAH----V--- 254 (272)
Q Consensus 194 ~--~---------~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~----~--- 254 (272)
. . .++.+.+..+||+++++||+|+||+||++|++|||+|||+|||+ +++||+++|+|+|+ +
T Consensus 157 ~~e~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~ 236 (399)
T 1zor_A 157 RNKENKTLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEK 236 (399)
T ss_dssp ESSSCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHH
T ss_pred eccccccceeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 0 0 12456667789999999999999999999988999999999999 56899999999986 2
Q ss_pred -cceeeeEeeecccceec
Q 024132 255 -SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 -~v~~~~~~iD~~~m~lv 271 (272)
+|+++|++||+++||||
T Consensus 237 ~~I~~~~~~vD~~~mqlv 254 (399)
T 1zor_A 237 AGVNYRYMLIDDAAAQIL 254 (399)
T ss_dssp TTCCEEEEEHHHHHHHHH
T ss_pred CcEEEEEEEHHHHHHHhc
Confidence 49999999999999997
No 27
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=3.9e-55 Score=419.51 Aligned_cols=216 Identities=14% Similarity=0.047 Sum_probs=181.0
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
.++|++|||||||||+++...++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+..
T Consensus 7 ~~~i~~i~GDei~~e~~~~i~~v~~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~~ 82 (402)
T 4aoy_A 7 KVPLVEMDGDEMTRIIWRLIKENLLEP----YIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQR 82 (402)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTT----TEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred cCcEEEECCCchHHHHHHHHHHHHHhc----CCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCccc
Confidence 478999999999999999999999776 5899999999999999999999999999999999999999999997632
Q ss_pred C-----CCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCccc-----
Q 024132 124 N-----EKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVT----- 193 (272)
Q Consensus 124 ~-----~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~----- 193 (272)
. +.. ..|+|++||+.||||||+||+ ++||++ +|+++ .++|||||||||||+|+|.++.....
T Consensus 83 ~~~~~l~~~--~~s~n~~LR~~Ldlyan~rPv-~~~~i~--~~~~~---~~~DivIvREnteg~Y~g~e~~~~~~~~~~~ 154 (402)
T 4aoy_A 83 VEEYNLKKM--WKSPNGTIRAILDGTVFRAPI-VVNSIK--PFVKG---WKKPISIARHAYGDVYKNVEYYVPSAGKAEL 154 (402)
T ss_dssp HHHTTCSSC--CCCHHHHHHHHHTCEEEEEEC-CCTTSC--CSBTT---CCBCCEEEEC------CCEEEEECSCEEEEE
T ss_pred ccccccccc--ccChHHHHHHHhCCeEEeeeE-eccCCC--CcCCC---CCCCEEEEEeccCCeecCceeeccCccceee
Confidence 1 111 246799999999999999999 999996 67653 47999999999999999986432100
Q ss_pred ----ccC-----------cceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHhc---C
Q 024132 194 ----EHG-----------EEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVAH---V 254 (272)
Q Consensus 194 ----~~~-----------~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva~---~ 254 (272)
..+ ...+.+...+|+++++||+|+||+||++|+++||+|||+|||+ ++++|+++|+|+|+ +
T Consensus 155 ~~~~~~g~~~~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp 234 (402)
T 4aoy_A 155 VFTSENGEVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYK 234 (402)
T ss_dssp EEEETTSCEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTH
T ss_pred eeeccCCcccccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCc
Confidence 001 1235677888999999999999999999999999999999999 77999999999987 2
Q ss_pred ------cceeeeEeeecccceec
Q 024132 255 ------SFTLNVHVLDCEKVILL 271 (272)
Q Consensus 255 ------~v~~~~~~iD~~~m~lv 271 (272)
+|+++|++||+++||||
T Consensus 235 ~~~~~~~i~~~~~~vD~~~~~lv 257 (402)
T 4aoy_A 235 EKFEAKNLQYFYTLIDDAVARII 257 (402)
T ss_dssp HHHHHTTCCEEEEEHHHHHHHHH
T ss_pred ccccCCCeEEEEEEHHHHHHHHh
Confidence 79999999999999997
No 28
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=5.5e-54 Score=414.74 Aligned_cols=223 Identities=13% Similarity=0.106 Sum_probs=178.3
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~ 123 (272)
+++|++||||||||||++++.+.+..- +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..+.
T Consensus 22 ~~~I~~l~GDgig~evl~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~~~ 97 (427)
T 2qfy_A 22 KQPVVELDGDEMTRIIWDKIKKKLILP----YLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEAR 97 (427)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTT----TEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred eeeEEEecCCCHHHHHHHHHHHHhccC----CCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCCcc
Confidence 478999999999999666555533211 6899999999999999999999999999999999999999999996431
Q ss_pred CC-CCC--CCccchhhhhhccCceEEeEEeee--cCCCcc--CCcc---cc---ccCCCccEEEEeecCCccccCCCC--
Q 024132 124 NE-KHL--KPETGLLQIREGLKVFANLRPATV--LPQLVD--SSTL---KK---EVAEGVDLMVVRELTGGIYFGKPR-- 188 (272)
Q Consensus 124 ~~-~~~--~~~s~~l~LR~~ldLyanvRPvr~--~pg~~~--~spL---k~---~~~~~iDivIVREnTEG~Y~g~~~-- 188 (272)
.+ .+. ..+|+|+.||+.||||+|+||++. +|++.. .||| |. ..+.++|++||||||||+|+..+.
T Consensus 98 ~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~te 177 (427)
T 2qfy_A 98 VKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPT 177 (427)
T ss_dssp HHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCTT
T ss_pred cchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccccC
Confidence 10 011 124669999999999999999885 876632 2676 32 224689999999999999993211
Q ss_pred C--Cccccc----CcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCcccc-chhhHHHHHHHHh-c--Cc---
Q 024132 189 G--YGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLE-VMVYMLKQFSLVA-H--VS--- 255 (272)
Q Consensus 189 ~--~~~~~~----~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~-~s~lf~ev~~eva-~--~~--- 255 (272)
+ ..+++. ..+++.. .++|+++++||+|+||+||++|++|||+|||+|||+ +++||+++|+|+| + ++
T Consensus 178 G~~~~~~~~~~~~~~~v~~~-~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~~ 256 (427)
T 2qfy_A 178 TAQPQTLKVYDYKGSGVAMA-MYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFE 256 (427)
T ss_dssp TSCCEEEEEEEESSCEEEEE-EEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CccccccccccCCCceEEEE-EEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhCCCccc
Confidence 1 011111 2345544 589999999999999999999999999999999999 5789999999998 4 46
Q ss_pred ---ceeeeEeeecccceec
Q 024132 256 ---FTLNVHVLDCEKVILL 271 (272)
Q Consensus 256 ---v~~~~~~iD~~~m~lv 271 (272)
|+++|++||+++||||
T Consensus 257 ~~~I~~e~~~VD~~amqlV 275 (427)
T 2qfy_A 257 QLGIHYEHRLIDDMVAQMI 275 (427)
T ss_dssp HHTCCEEEEEHHHHHHHHH
T ss_pred CCeEEEEEEEHHHHHHHHH
Confidence 9999999999999997
No 29
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=76.68 E-value=3.3 Score=38.40 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=26.6
Q ss_pred EEEECCC--CccHHHHHHHH----------------HHHHH-hhcccCCeeEEEEE
Q 024132 47 ITLLPGD--GIGPEVIAVAK----------------NVLKL-AGSLEGIEFAFQEM 83 (272)
Q Consensus 47 IavIpGD--GIGPEV~~aa~----------------~VL~a-~~~~~g~~ie~~~~ 83 (272)
|++-.|| ||||||+-.+. ++|+. ..+..|+++++..+
T Consensus 9 iaIT~GDpaGIGpEii~ka~~~~~~~~~~~vv~Gd~~~l~~~~~~~l~~~~~~~~i 64 (330)
T 2hi1_A 9 VAITMGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATLKRLQAKGITPNVELRAI 64 (330)
T ss_dssp EEEECCCTTTTHHHHHHHHHTSTTTTTCSEEEEECHHHHHHHHHTTSSCCCEEEEE
T ss_pred EEEcCCCCcchhHHHHHHHHhchhhcCCCEEEEeCHHHHHHHHHHhcCCCceeEec
Confidence 9999999 89999988775 45555 34445666666554
No 30
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=75.84 E-value=11 Score=32.91 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
..+++.+++|+++|+..+.+|+++|=
T Consensus 182 ~~s~~al~~a~~la~~~~a~l~ll~v 207 (309)
T 3cis_A 182 SASELATAIAFDEASRRNVDLVALHA 207 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 56889999999999988888998873
No 31
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=73.83 E-value=3.6 Score=38.24 Aligned_cols=21 Identities=24% Similarity=0.732 Sum_probs=17.5
Q ss_pred CceEEEEECCC--CccHHHHHHH
Q 024132 43 KRYSITLLPGD--GIGPEVIAVA 63 (272)
Q Consensus 43 ~~~~IavIpGD--GIGPEV~~aa 63 (272)
++.+|++-.|| ||||||+-.+
T Consensus 7 ~~~~iaiT~GDpaGIGpEiilka 29 (334)
T 3lxy_A 7 HNNRLVITPGEPAGVGPDLAITL 29 (334)
T ss_dssp CCSEEEEECCCTTSSHHHHHHHH
T ss_pred CCCEEEEeCCCCccchHHHHHHh
Confidence 45789999999 7999998654
No 32
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=70.58 E-value=19 Score=31.18 Aligned_cols=25 Identities=0% Similarity=-0.019 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhC--CCcEEEEeC
Q 024132 210 EVDRIARVAFETARKR--HGKLCSVDK 234 (272)
Q Consensus 210 ~~eRIar~AFe~A~~r--~kkVT~vhK 234 (272)
.+++.+++|+++|+.. +.+|+++|=
T Consensus 175 ~s~~al~~a~~la~~~~~~a~l~ll~v 201 (319)
T 3olq_A 175 LNLKLIELTNDLSHRIQKDPDVHLLSA 201 (319)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 5799999999999998 888888874
No 33
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=69.55 E-value=4 Score=37.86 Aligned_cols=19 Identities=37% Similarity=0.852 Sum_probs=16.4
Q ss_pred eEEEEECCC--CccHHHHHHH
Q 024132 45 YSITLLPGD--GIGPEVIAVA 63 (272)
Q Consensus 45 ~~IavIpGD--GIGPEV~~aa 63 (272)
.+|++-.|| ||||||+-.+
T Consensus 3 ~~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 3 LRFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CCEEEECCSTTSSHHHHHHHH
T ss_pred CEEEEcCCCCcchhHHHHHHH
Confidence 369999998 8999998876
No 34
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=65.79 E-value=21 Score=27.05 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=40.7
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeec
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAI 116 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gav 116 (272)
+++|.+.=|.|+|-.++-. ++=+ +.+..|++++...++++. +.+ .+.++|++|.||-
T Consensus 3 mkkIll~Cg~G~sTS~l~~--k~~~-~~~~~gi~~~i~a~~~~~---------~~~----~~~~~Dvil~~pq 59 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVS--KMRA-QAEKYEVPVIIEAFPETL---------AGE----KGQNADVVLLGPQ 59 (106)
T ss_dssp CEEEEEECSSSTTTHHHHH--HHHH-HHHHSCCSEEEEEECSSS---------TTH----HHHHCSEEEECTT
T ss_pred CcEEEEECCCchhHHHHHH--HHHH-HHHHCCCCeEEEEecHHH---------HHh----hccCCCEEEEccc
Confidence 4689999999999986544 4334 444558899888877654 222 3567999998873
No 35
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=65.52 E-value=3.3 Score=38.38 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=18.0
Q ss_pred CceEEEEECCC--CccHHHHHHHH
Q 024132 43 KRYSITLLPGD--GIGPEVIAVAK 64 (272)
Q Consensus 43 ~~~~IavIpGD--GIGPEV~~aa~ 64 (272)
++.+|++-.|| ||||||+-.+.
T Consensus 7 ~~~kIaIT~GDPaGIGpEIilKa~ 30 (349)
T 4aty_A 7 RAMTVALAIGDPNGIGPEIAVKAA 30 (349)
T ss_dssp CCCCEEEECCCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCcchhHHHHHHHHH
Confidence 45789999997 99999976553
No 36
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=57.29 E-value=4.9 Score=37.84 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.0
Q ss_pred ceEEEEECCC--CccHHHHHHH
Q 024132 44 RYSITLLPGD--GIGPEVIAVA 63 (272)
Q Consensus 44 ~~~IavIpGD--GIGPEV~~aa 63 (272)
+++|++-.|| ||||||+-.+
T Consensus 4 ~~~iaIT~GDpaGIGpEI~~ka 25 (367)
T 3tsn_A 4 MKKLAISIGDINSIGLEILVRS 25 (367)
T ss_dssp CCEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEeCCCCccchHHHHHHh
Confidence 4689999999 8999997655
No 37
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=53.06 E-value=72 Score=27.60 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=37.7
Q ss_pred CceEEEEECCC----CccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhh-hhhcCCCCCH---HHHHHHHhcCeEEEe
Q 024132 43 KRYSITLLPGD----GIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSA-LDLVGVPLPE---ETLAAAKQSDAVLLG 114 (272)
Q Consensus 43 ~~~~IavIpGD----GIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~-~~~~G~~lp~---etl~~ik~~daiL~G 114 (272)
.+++|.+|-|- |...-++++..+-++.. |.+ ++.+++..-- +.... ..|+ +..+.++++|++++|
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~----g~e--ve~idL~~~pl~~~d~-~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFF----GAE--VKVFDPSGLPLPDAAP-VSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHT----TCE--EEECCCTTCCCTTSSC-TTSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhC----CCE--EEEEEhhcCCCCcCCC-CCCHHHHHHHHHHHHCCEEEEE
Confidence 35689999886 55555555555555432 444 4445554311 11111 1333 456788899999997
Q ss_pred e
Q 024132 115 A 115 (272)
Q Consensus 115 a 115 (272)
.
T Consensus 106 s 106 (247)
T 2q62_A 106 S 106 (247)
T ss_dssp E
T ss_pred e
Confidence 5
No 38
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=52.01 E-value=1.1e+02 Score=25.94 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 211 VDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 211 ~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
+++.+++|+++|+..+.+|+++|=
T Consensus 154 s~~al~~a~~la~~~~a~l~ll~v 177 (290)
T 3mt0_A 154 HAGIISHAYDIAGLAKATLHVISA 177 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEE
Confidence 899999999999998888888873
No 39
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=44.01 E-value=20 Score=27.00 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
+.+++.+++|.++|+..+.+|+++|=
T Consensus 16 ~~s~~al~~A~~la~~~~a~l~ll~v 41 (146)
T 3s3t_A 16 DAAQAAFTEAVNIAQRHQANLTALYV 41 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 56899999999999988888888774
No 40
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=42.82 E-value=21 Score=26.76 Aligned_cols=26 Identities=4% Similarity=-0.124 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
+.+++.+++|.++|+..+.+|+++|=
T Consensus 13 ~~s~~al~~A~~la~~~~a~l~ll~v 38 (147)
T 3hgm_A 13 KGAVKALEKGVGLQQLTGAELYILCV 38 (147)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 56899999999999988888888874
No 41
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=40.29 E-value=1.1e+02 Score=25.66 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCeEEEee
Q 024132 99 EETLAAAKQSDAVLLGA 115 (272)
Q Consensus 99 ~etl~~ik~~daiL~Ga 115 (272)
++..+.+.++|++++|.
T Consensus 71 ~~~~~~l~~AD~iI~~s 87 (242)
T 1sqs_A 71 GVIKKELLESDIIIISS 87 (242)
T ss_dssp HHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHCCEEEEEc
Confidence 45678889999999975
No 42
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=39.35 E-value=27 Score=26.73 Aligned_cols=27 Identities=19% Similarity=0.014 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 208 AYEVDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 208 r~~~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
.+.+++.+++|.++|+..+.+|+++|=
T Consensus 27 s~~s~~al~~a~~la~~~~a~l~ll~v 53 (156)
T 3fg9_A 27 NTSSERAFRYATTLAHDYDVPLGICSV 53 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 467899999999999998888888773
No 43
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=37.98 E-value=28 Score=25.99 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEe
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVD 233 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vh 233 (272)
+.+++.+++|.++|+..+.+|+++|
T Consensus 13 ~~s~~al~~a~~la~~~~a~l~ll~ 37 (137)
T 2z08_A 13 EHARRAAEVAKAEAEAHGARLIVVH 37 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 4678999999999998888888876
No 44
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=37.21 E-value=1.2e+02 Score=25.44 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=47.0
Q ss_pred CCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHh-----cCeEEE
Q 024132 39 APPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQ-----SDAVLL 113 (272)
Q Consensus 39 ~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~-----~daiL~ 113 (272)
..|..+.+|+||-|---=-++++++..+|+.+ |+++|.... |. . -.|++..+.+++ +++++-
T Consensus 7 ~~~~m~~~V~IimGS~SD~~v~~~a~~~L~~~----Gi~~ev~V~--Sa---H----R~p~~~~~~~~~a~~~g~~ViIa 73 (174)
T 3kuu_A 7 SAYAAGVKIAIVMGSKSDWATMQFAADVLTTL----NVPFHVEVV--SA---H----RTPDRLFSFAEQAEANGLHVIIA 73 (174)
T ss_dssp CSSCCCCCEEEEESSGGGHHHHHHHHHHHHHT----TCCEEEEEC--CT---T----TCHHHHHHHHHHTTTTTCSEEEE
T ss_pred ccccCCCcEEEEECcHHHHHHHHHHHHHHHHc----CCCEEEEEE--cc---c----CCHHHHHHHHHHHHhCCCcEEEE
Confidence 34666678999999888899999999999977 466554442 22 1 247777777753 677777
Q ss_pred eecc
Q 024132 114 GAIG 117 (272)
Q Consensus 114 Gavg 117 (272)
++-+
T Consensus 74 ~AG~ 77 (174)
T 3kuu_A 74 GNGG 77 (174)
T ss_dssp EEES
T ss_pred ECCh
Confidence 7754
No 45
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=36.76 E-value=31 Score=26.86 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
+.+++.+++|+++|+..+.+|+++|=
T Consensus 36 ~~s~~al~~A~~la~~~~a~l~llhV 61 (155)
T 3dlo_A 36 DRAERVLRFAAEEARLRGVPVYVVHS 61 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 56899999999999988888888873
No 46
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=36.28 E-value=1.1e+02 Score=27.21 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=40.5
Q ss_pred CCceEEEEECCC----CccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhh-hhhcCCCCCHH---HHHHHHhcCeEEE
Q 024132 42 TKRYSITLLPGD----GIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSA-LDLVGVPLPEE---TLAAAKQSDAVLL 113 (272)
Q Consensus 42 ~~~~~IavIpGD----GIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~-~~~~G~~lp~e---tl~~ik~~daiL~ 113 (272)
..+++|.+|-|- |...-++++..+.++.. |.+ ++.+++..-- +...+...|++ ..+.++++|++++
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~----G~e--veiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFF----GAE--TRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHT----TCE--EEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhC----CCE--EEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 345799999886 56666666666666542 444 4445554311 11111124443 5678889999999
Q ss_pred ee
Q 024132 114 GA 115 (272)
Q Consensus 114 Ga 115 (272)
|.
T Consensus 130 aS 131 (279)
T 2fzv_A 130 CS 131 (279)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 47
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=35.50 E-value=52 Score=25.13 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=37.6
Q ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeec
Q 024132 42 TKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAI 116 (272)
Q Consensus 42 ~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gav 116 (272)
.+.++|.++=+.|....++-. + ++.+.+..|++++..-...+. .. +.+.++|++|+||=
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~--k-m~~~a~~~gi~v~i~a~~~~~-----~~--------~~~~~~DvvLLgPQ 62 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLAN--A-INEGANLTEVRVIANSGAYGA-----HY--------DIMGVYDLIILAPQ 62 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHH--H-HHHHHHHHTCSEEEEEEETTS-----CT--------TTGGGCSEEEECGG
T ss_pred ccCceEEEECCCCCCHHHHHH--H-HHHHHHHCCCceEEEEcchHH-----HH--------hhccCCCEEEEChH
Confidence 356789999999988776432 3 333344457888876655432 11 12357999999983
No 48
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=34.96 E-value=29 Score=26.23 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEe
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVD 233 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vh 233 (272)
+.+++.+++|+++|+..+.+|+++|
T Consensus 17 ~~s~~al~~a~~la~~~~a~l~ll~ 41 (150)
T 3tnj_A 17 SEDSQVVQKVRNLASQIGARLSLIH 41 (150)
T ss_dssp TTHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 3488999999999999888888877
No 49
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=33.83 E-value=1.3e+02 Score=25.33 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=44.2
Q ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHh-----cCeEEEeec
Q 024132 42 TKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQ-----SDAVLLGAI 116 (272)
Q Consensus 42 ~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~-----~daiL~Gav 116 (272)
....+|+||-|---=-+++.++..+|+.+ |+++|... +|. . -.|++..+.+++ .++++-|+-
T Consensus 10 ~~~P~V~IimGS~SD~~v~~~a~~~l~~~----gi~~ev~V--~sa---H----R~p~~l~~~~~~a~~~g~~ViIa~AG 76 (173)
T 4grd_A 10 HSAPLVGVLMGSSSDWDVMKHAVAILQEF----GVPYEAKV--VSA---H----RMPDEMFDYAEKARERGLRAIIAGAG 76 (173)
T ss_dssp CSSCSEEEEESSGGGHHHHHHHHHHHHHT----TCCEEEEE--CCT---T----TSHHHHHHHHHHHTTTTCSEEEEEEE
T ss_pred CCCCeEEEEeCcHhHHHHHHHHHHHHHHc----CCCEEEEE--Ecc---c----cCHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34568999999888889999999999987 46655433 222 1 247777777654 467776664
Q ss_pred c
Q 024132 117 G 117 (272)
Q Consensus 117 g 117 (272)
+
T Consensus 77 ~ 77 (173)
T 4grd_A 77 G 77 (173)
T ss_dssp S
T ss_pred c
Confidence 4
No 50
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=33.42 E-value=30 Score=25.70 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHH-HhCCCcEEEEeC
Q 024132 209 YEVDRIARVAFETA-RKRHGKLCSVDK 234 (272)
Q Consensus 209 ~~~eRIar~AFe~A-~~r~kkVT~vhK 234 (272)
+.+++.+++|.++| +..+.+|+++|=
T Consensus 12 ~~s~~al~~a~~la~~~~~a~l~ll~v 38 (138)
T 3idf_A 12 EACERAAQYILDMFGKDADCTLTLIHV 38 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence 56899999999999 777888888874
No 51
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=31.39 E-value=36 Score=25.34 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEe
Q 024132 210 EVDRIARVAFETARKRHGKLCSVD 233 (272)
Q Consensus 210 ~~eRIar~AFe~A~~r~kkVT~vh 233 (272)
.+++.+++|.++|+..+.+|+++|
T Consensus 14 ~s~~al~~a~~la~~~~a~l~ll~ 37 (141)
T 1jmv_A 14 ESPILLKKAVGIAKRHDAKLSIIH 37 (141)
T ss_dssp THHHHHHHHHHHHHHHTCEEEEEE
T ss_pred hhHHHHHHHHHHHHhcCCEEEEEE
Confidence 467899999999998888888876
No 52
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=30.07 E-value=90 Score=23.58 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=34.4
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecc--hhhhhhcCCCCC
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMG--GSALDLVGVPLP 98 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G--~~~~~~~G~~lp 98 (272)
+.+|.+.--+|=++ +..+..+|+.+.+.+++ +|..+++. .+...++|..+|
T Consensus 29 m~~vv~y~~~~C~~--C~~a~~~L~~l~~e~~i--~~~~vDId~d~~l~~~ygv~VP 81 (107)
T 2fgx_A 29 PRKLVVYGREGCHL--CEEMIASLRVLQKKSWF--ELEVINIDGNEHLTRLYNDRVP 81 (107)
T ss_dssp CCCEEEEECSSCHH--HHHHHHHHHHHHHHSCC--CCEEEETTTCHHHHHHSTTSCS
T ss_pred ccEEEEEeCCCChh--HHHHHHHHHHHHHhcCC--eEEEEECCCCHHHHHHhCCCCc
Confidence 46788888888877 88899999998766664 45555554 233344555455
No 53
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=29.68 E-value=26 Score=26.93 Aligned_cols=25 Identities=0% Similarity=-0.113 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEe
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVD 233 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vh 233 (272)
+.+++.+++|+++|+..+.+|+++|
T Consensus 16 ~~s~~al~~a~~la~~~~a~l~ll~ 40 (162)
T 1mjh_A 16 ETAEIALKHVKAFKTLKAEEVILLH 40 (162)
T ss_dssp HHHHHHHHHHHHTCCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 4588899999999988788888876
No 54
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=29.58 E-value=31 Score=26.80 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEe
Q 024132 209 YEVDRIARVAFETARKRHGKLCSVD 233 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~vh 233 (272)
+.+++.+++|.++|+..+.+|+++|
T Consensus 16 ~~s~~al~~A~~la~~~~a~l~ll~ 40 (170)
T 2dum_A 16 EGAYRAVEVFEKRNKMEVGEVILLH 40 (170)
T ss_dssp HHHHHHHHHHHHHCCSCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4588999999999988888888876
No 55
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=29.03 E-value=99 Score=26.59 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=42.8
Q ss_pred ccccccCCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhh--hcCCC------CCHHHHH
Q 024132 32 RCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALD--LVGVP------LPEETLA 103 (272)
Q Consensus 32 ~~~~~~~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~--~~G~~------lp~etl~ 103 (272)
-|++.++++.....+|+..|+. .|-.+......++... .|++++|..+.-|.+... ..|+. ...-...
T Consensus 18 ~~~~~~~a~~~~~lrig~~~~~--~p~~~a~~~g~~~~~~--~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~ 93 (324)
T 3ksx_A 18 GSHQPALAAEPAQLRIGYQKAV--SSLVLAKQHRLLEQRF--PRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFA 93 (324)
T ss_dssp -------CCCCSEEEEEEETTC--HHHHHHHHHTHHHHHC--TTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHH
T ss_pred CCCchhhcCCCCeEEEEecCCc--hhHHHHHhhCHHHHhc--CCCceEEEECCCHHHHHHHHHCCCCCEEeecCHHHHHH
Confidence 3444455555667999999974 5666666665555432 168999998765544322 24431 1222233
Q ss_pred HHHhcCeEEEeec
Q 024132 104 AAKQSDAVLLGAI 116 (272)
Q Consensus 104 ~ik~~daiL~Gav 116 (272)
..+..+..+++..
T Consensus 94 ~~~g~~~~~v~~~ 106 (324)
T 3ksx_A 94 QAAGADLLYVGWV 106 (324)
T ss_dssp HHTTCCEEEEEEE
T ss_pred HhcCCCEEEEEEe
Confidence 3445666666654
No 56
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=28.54 E-value=77 Score=27.08 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=37.0
Q ss_pred CceEEEEECCCC--------ccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEe
Q 024132 43 KRYSITLLPGDG--------IGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLG 114 (272)
Q Consensus 43 ~~~~IavIpGDG--------IGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~G 114 (272)
.+++|.+|-|-= .-..+.+++.+.++.. |.+++..+.+ . +.. .++..+.++++|+++++
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~----g~ev~~~dL~--~------~~D-v~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRES----GHQVKITTVD--Q------GYD-IESEIENYLWADTIIYQ 90 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHT----TCCEEEEEGG--G------CCC-HHHHHHHHHHCSEEEEE
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhC----CCEEEEEECC--C------ccC-HHHHHHHHHhCCEEEEE
Confidence 456899998752 2234455555544442 5667765543 1 111 35668999999999997
Q ss_pred e
Q 024132 115 A 115 (272)
Q Consensus 115 a 115 (272)
.
T Consensus 91 ~ 91 (218)
T 3rpe_A 91 M 91 (218)
T ss_dssp E
T ss_pred C
Confidence 3
No 57
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=26.34 E-value=2.3e+02 Score=22.78 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=36.2
Q ss_pred ceEEEEECCC----CccHHHHHHHHHH-HHHhhcccCCeeEEEEEecchhhh--hhcCCCCCHH---HHHHHHhcCeEEE
Q 024132 44 RYSITLLPGD----GIGPEVIAVAKNV-LKLAGSLEGIEFAFQEMPMGGSAL--DLVGVPLPEE---TLAAAKQSDAVLL 113 (272)
Q Consensus 44 ~~~IavIpGD----GIGPEV~~aa~~V-L~a~~~~~g~~ie~~~~~~G~~~~--~~~G~~lp~e---tl~~ik~~daiL~ 113 (272)
+++|.+|-|- |....+.++..+- ++.. |. +.+.+++..... .......+++ ..+.+.++|++++
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~----g~--~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~ 75 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARS----DS--QGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV 75 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHS----SE--EEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHC----CC--eEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEE
Confidence 4689999887 5555555555554 4432 44 444444432110 0011233443 3467889999999
Q ss_pred ee
Q 024132 114 GA 115 (272)
Q Consensus 114 Ga 115 (272)
|.
T Consensus 76 ~s 77 (197)
T 2vzf_A 76 AT 77 (197)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 58
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=26.16 E-value=2.2e+02 Score=21.72 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=40.3
Q ss_pred eEEEEE--CCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeecc
Q 024132 45 YSITLL--PGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIG 117 (272)
Q Consensus 45 ~~IavI--pGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg 117 (272)
++|..+ =+.||-.-.|. ..-|+.+.+..|+++..+..-..+ -.+.|+++.+ +++|++|+.+-.
T Consensus 3 mkivaVtaCptGiAhTymA--AeaLekaA~~~G~~ikVEtqgs~g-----~~n~Lt~~~I---~~AD~VIia~d~ 67 (106)
T 2m1z_A 3 RKIIAVTACATGVAHTYMA--AQALKKGAKKMGNLIKVETQGATG-----IENELTEKDV---NIGEVVIFAVDT 67 (106)
T ss_dssp CEEEEEEECSSCHHHHHHH--HHHHHHHHHHHTCEEEEEEEETTE-----ESSCCCHHHH---HHCSEEEEEESS
T ss_pred ccEEEEEECCCcHHHHHHH--HHHHHHHHHHCCCEEEEEEecCcc-----ccCCCCHHHH---hhCCEEEEeccc
Confidence 355555 46677776663 234566666678888877754322 1246777654 599999998754
No 59
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=26.05 E-value=40 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeC
Q 024132 211 VDRIARVAFETARKRHGKLCSVDK 234 (272)
Q Consensus 211 ~eRIar~AFe~A~~r~kkVT~vhK 234 (272)
+++.+++|.++|+..+.+|+++|=
T Consensus 17 s~~al~~a~~la~~~~a~l~ll~v 40 (138)
T 1q77_A 17 CEKAITYAVNFSEKLGAELDILAV 40 (138)
T ss_dssp CHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEE
Confidence 678899999999888889999883
No 60
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=25.87 E-value=1.8e+02 Score=24.51 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=43.6
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhc-----CeEEEeecc
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQS-----DAVLLGAIG 117 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~-----daiL~Gavg 117 (272)
..|++|-|---=-++|..+..+|+.+ |+++|.... +. . -.|++..+.++++ ++++-|+-+
T Consensus 23 p~V~IimGS~SD~~v~~~a~~~L~~~----gI~~e~~V~--SA---H----Rtp~~l~~~~~~a~~~g~~ViIa~AG~ 87 (181)
T 4b4k_A 23 SLVGVIMGSTSDWETMKYACDILDEL----NIPYEKKVV--SA---H----RTPDYMFEYAETARERGLKVIIAGAGG 87 (181)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHT----TCCEEEEEC--CT---T----TSHHHHHHHHHHTTTTTCCEEEEEECS
T ss_pred ccEEEEECCHhHHHHHHHHHHHHHHc----CCCeeEEEE--cc---c----cChHHHHHHHHHHHhcCceEEEEeccc
Confidence 45999999888889999999999987 466655443 22 1 2488888777653 677777644
No 61
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=25.01 E-value=2.8e+02 Score=22.65 Aligned_cols=72 Identities=7% Similarity=0.118 Sum_probs=38.8
Q ss_pred CceEEEEECCC----CccHHHHHHHHHHHH-HhhcccCCeeEEEEEecchhhh---hhc-CCCCCH---HHHHHHHhcCe
Q 024132 43 KRYSITLLPGD----GIGPEVIAVAKNVLK-LAGSLEGIEFAFQEMPMGGSAL---DLV-GVPLPE---ETLAAAKQSDA 110 (272)
Q Consensus 43 ~~~~IavIpGD----GIGPEV~~aa~~VL~-a~~~~~g~~ie~~~~~~G~~~~---~~~-G~~lp~---etl~~ik~~da 110 (272)
.+.||.+|-|- +...-+.++..+.+. .+.+. +..++.+.++++.... ... ....++ +..+.++++|+
T Consensus 10 ~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~-~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 10 HMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSAR-GEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhc-CCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 35789999884 455555555555332 22221 2235555556654321 111 112233 45678889999
Q ss_pred EEEee
Q 024132 111 VLLGA 115 (272)
Q Consensus 111 iL~Ga 115 (272)
+++|.
T Consensus 89 ivi~s 93 (191)
T 3k1y_A 89 LVVAT 93 (191)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99975
No 62
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=24.75 E-value=87 Score=24.95 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=21.4
Q ss_pred cccccCCCCCCceEEEEEC---------CCC--ccHHHHHHHHHHHHHhhcccCCeeEEEEEec
Q 024132 33 CAAAATAPPTKRYSITLLP---------GDG--IGPEVIAVAKNVLKLAGSLEGIEFAFQEMPM 85 (272)
Q Consensus 33 ~~~~~~~~~~~~~~IavIp---------GDG--IGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~ 85 (272)
|++..+....+..+|++.+ .+| .|- ...+++.+.+..|++++|...++
T Consensus 1 c~~~~~~~~~~~l~v~~~~~~~P~~~~~~~g~~~G~-----~~dl~~~i~~~~g~~~~~~~~~~ 59 (242)
T 3del_B 1 CLKEGGDSNSEKFIVGTNATYPPFEFVDKRGEVVGF-----DIDLAREISNKLGKTLDVREFSF 59 (242)
T ss_dssp ----------CEEEEEECSCBTTTBEECTTSCEESH-----HHHHHHHHHHHHTCEEEEEECCG
T ss_pred CCcccccccCCcEEEEeCCCCCCeeEECCCCCEEEe-----eHHHHHHHHHHcCCceEEEEcCH
Confidence 5555555555566666642 233 122 33444555555578999987653
No 63
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=24.53 E-value=2e+02 Score=22.75 Aligned_cols=17 Identities=6% Similarity=0.009 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCeEEEee
Q 024132 99 EETLAAAKQSDAVLLGA 115 (272)
Q Consensus 99 ~etl~~ik~~daiL~Ga 115 (272)
++..+.++++|++++|.
T Consensus 76 ~~~~~~l~~aD~iI~~s 92 (191)
T 1t0i_A 76 RSWSRIVNALDIIVFVT 92 (191)
T ss_dssp HHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHhCCEEEEEe
Confidence 35568889999999975
No 64
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=23.72 E-value=2e+02 Score=23.04 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=36.1
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
+++|.+|-|-.-|- +.++.+++.+..+- +. +++.. . ..+|+...+.+.++|++++|.
T Consensus 6 ~~kiliiy~S~~Gn-----T~~lA~~ia~~l~~--~~--~~v~~-----~-~~~~~~~~~~l~~~D~ii~gs 62 (193)
T 3d7n_A 6 SSNTVVVYHSGYGH-----THRMAEAVAEGAEA--TL--HAIDA-----E-GNLSEDGWAALDAADAIIFGT 62 (193)
T ss_dssp CCCEEEEECCSSSH-----HHHHHHHHHHHHTC--EE--EECCT-----T-SCCCHHHHHHHHHCSEEEEEE
T ss_pred CCEEEEEEECCChH-----HHHHHHHHHHHhhh--cc--eEeee-----c-CCCCHhHHHHHHHCCEEEEEe
Confidence 46799999887664 56666665543221 11 12211 1 236777888999999999985
No 65
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=23.54 E-value=1.3e+02 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=31.4
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhCCCc--EEEEeC-Cccc
Q 024132 200 GFNTEVYAAYEVDRIARVAFETARKRHGK--LCSVDK-ANVL 238 (272)
Q Consensus 200 A~~~~~iTr~~~eRIar~AFe~A~~r~kk--VT~vhK-aNVl 238 (272)
......+|.+...+++..|.+.|++++.+ |+++|- .|.+
T Consensus 6 ~~~~~~lt~~~A~~l~~aa~~~A~~~g~~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 6 SQQVQTITLAAAQQMAAAVEKKATEINVAVVFSVVDRGGNTL 47 (145)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHTTCCCEEEEEETTSCEE
T ss_pred ceeecCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCEE
Confidence 35677899999999999999999998754 666884 5655
No 66
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=23.46 E-value=30 Score=25.81 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCC
Q 024132 211 VDRIARVAFETARKRHGKLCSVDKA 235 (272)
Q Consensus 211 ~eRIar~AFe~A~~r~kkVT~vhKa 235 (272)
+++.+++|.++|+..+.+|+++|=.
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~ 40 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVI 40 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 5678899999999888888888743
No 67
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=23.21 E-value=1.5e+02 Score=23.57 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.5
Q ss_pred HHHHHhcCeEEEee
Q 024132 102 LAAAKQSDAVLLGA 115 (272)
Q Consensus 102 l~~ik~~daiL~Ga 115 (272)
.+.+.++|++++|.
T Consensus 65 ~~~l~~aD~ii~gs 78 (199)
T 2zki_A 65 LDDMRWADGFAIGS 78 (199)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHHhCCEEEEEC
Confidence 78899999999975
No 68
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=23.14 E-value=2.2e+02 Score=23.80 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=43.0
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHh-----cCeEEEeecc
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQ-----SDAVLLGAIG 117 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~-----~daiL~Gavg 117 (272)
.+|+||-|---=-++++++..+|+.+ |+++|.... |. . -.|++..+..++ +++++-++-+
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~----Gi~~dv~V~--Sa---H----R~p~~l~~~~~~a~~~g~~ViIa~AG~ 76 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDEL----NIPYEKKVV--SA---H----RTPDYMFEYAETARERGLKVIIAGAGG 76 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHT----TCCEEEEEC--CT---T----TSHHHHHHHHHHTTTTTCCEEEEEEES
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHc----CCCEEEEEE--ec---c----CCHHHHHHHHHHHHhCCCcEEEEECCc
Confidence 57999999888889999999999977 466554432 22 1 247777777764 6777777644
No 69
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=22.45 E-value=2.3e+02 Score=21.00 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=35.7
Q ss_pred CceEEEEECCCCccHHHHHHHHHHHHHhhcccCCe-eEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEee
Q 024132 43 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIE-FAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGA 115 (272)
Q Consensus 43 ~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~-ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Ga 115 (272)
++++|.++=|.|+|--.+-+. -|+...+..|++ ++.....+.. + + +.+.++|.++.++
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~--kl~~~~~~~gi~~~~i~~~~~~~--~-------~----~~~~~~DlIi~t~ 75 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKM--KVENALRQLGVSDIESASCSVGE--A-------K----GLASNYDIVVASN 75 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHH--HHHHHHHHTTCCCEEEEEECHHH--H-------H----HHGGGCSEEEEET
T ss_pred CCcEEEEECCCcHHHHHHHHH--HHHHHHHHcCCCeEEEEEeeHHH--H-------h----hccCCCcEEEECC
Confidence 357899999999998665431 233333334677 7766665433 1 1 1245799988765
No 70
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=22.16 E-value=3.3e+02 Score=22.59 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=43.2
Q ss_pred eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHh-----cCeEEEeecc
Q 024132 45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQ-----SDAVLLGAIG 117 (272)
Q Consensus 45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~-----~daiL~Gavg 117 (272)
.+|+||-|---=-++++++..+|+.+ |+++|... +|. . -.|++.++.+++ +++++-++-+
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~----gi~~ev~V--~Sa---H----Rtp~~l~~~~~~~~~~g~~ViIa~AG~ 70 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNL----GIGYECEV--VSA---H----RTPDKMFDYAETAKERGLKVIIAGAGG 70 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHT----TCEEEEEE--CCT---T----TCHHHHHHHHHHTTTTTCCEEEEEECS
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHc----CCCEEEEE--EcC---c----CCHHHHHHHHHHHHhCCCcEEEEECCc
Confidence 58999999888899999999999977 46555444 222 1 247888877754 5777777644
No 71
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=21.93 E-value=1.3e+02 Score=28.91 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=23.0
Q ss_pred EEEeEeecHHHHHHHHHHHHHHHHhCC
Q 024132 200 GFNTEVYAAYEVDRIARVAFETARKRH 226 (272)
Q Consensus 200 A~~~~~iTr~~~eRIar~AFe~A~~r~ 226 (272)
-.++..||+++.+++...+-.+|+..+
T Consensus 389 ~~s~~~~s~~~l~~l~~~~~~lA~~EG 415 (434)
T 1kae_A 389 RMTVQELSKEGFSALASTIETLAAAER 415 (434)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred eeeEEEECHHHHHHHHHHHHHHHHhCC
Confidence 367778899999999999999998653
No 72
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.60 E-value=2.6e+02 Score=23.08 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=43.3
Q ss_pred ceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHh-----cCeEEEeecc
Q 024132 44 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQ-----SDAVLLGAIG 117 (272)
Q Consensus 44 ~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~-----~daiL~Gavg 117 (272)
..+|+||-|.--=-++++++..+|+.+ |+++|... +|. . -.|++..+.+++ +++++-++-+
T Consensus 3 ~~~V~Iimgs~SD~~v~~~a~~~l~~~----gi~~ev~V--~Sa---H----R~p~~~~~~~~~a~~~g~~ViIa~AG~ 68 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIMQESCNMLDYF----EIPYEKQV--VSA---H----RTPKMMVQFASEARERGINIIIAGAGG 68 (163)
T ss_dssp CCCEEEEESCGGGHHHHHHHHHHHHHT----TCCEEEEE--CCT---T----TSHHHHHHHHHHTTTTTCCEEEEEEES
T ss_pred CCeEEEEECcHHHHHHHHHHHHHHHHc----CCCEEEEE--ECC---c----CCHHHHHHHHHHHHhCCCcEEEEECCc
Confidence 357999999888889999999999887 46655443 222 1 247777776653 6877777754
No 73
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=21.47 E-value=71 Score=24.92 Aligned_cols=23 Identities=22% Similarity=0.037 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEE
Q 024132 209 YEVDRIARVAFETARKRHGKLCSV 232 (272)
Q Consensus 209 ~~~eRIar~AFe~A~~r~kkVT~v 232 (272)
+.+++.+++|+++|+ .+.+|+++
T Consensus 28 ~~s~~al~~A~~lA~-~~a~l~ll 50 (163)
T 1tq8_A 28 DSSMRAVDRAAQIAG-ADAKLIIA 50 (163)
T ss_dssp HHHHHHHHHHHHHHT-TTSEEEEE
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEE
Confidence 568999999999999 88899999
Done!