BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024133
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/272 (83%), Positives = 244/272 (89%)
Query: 1 MKLDTSGLESTSPFFGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLA 60
MKLDTSGLEST+P F D + L PSF LP TDFD FQK+ +K AKGTTTLA
Sbjct: 1 MKLDTSGLESTAPIFRRSDFVFDGLQMTPSFDLPNPTDFDGFQKEAVQMVKPAKGTTTLA 60
Query: 61 FIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL 120
FIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL
Sbjct: 61 FIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL 120
Query: 121 HELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTR 180
HELANKRRISVTGASKLLANILY+YRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG R
Sbjct: 121 HELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMR 180
Query: 181 FSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWK 240
FSVGSGSPYAYGVLD+GYK+DM++EEA+ELARRAIYHAT+RD ASGGV SVY+VGP+GWK
Sbjct: 181 FSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWK 240
Query: 241 KLSGDDVGELHYHYYPVTPSTVEQEMAEVAGA 272
K++GDDVG+LH+ YYPV P+TVEQEM EV GA
Sbjct: 241 KVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/270 (84%), Positives = 243/270 (90%), Gaps = 2/270 (0%)
Query: 1 MKLDTSGLESTSPF--FGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTT 58
MKLDTSG E++ P FGS ++ ELS+ PSF LP + +FD FQK K LKHAKGTTT
Sbjct: 1 MKLDTSGFETSMPMIGFGSSSDMLDELSSVPSFDLPRTKEFDGFQKKAKDMLKHAKGTTT 60
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC
Sbjct: 61 LAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 120
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178
RLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG
Sbjct: 121 RLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKG 180
Query: 179 TRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG 238
RFSVGSGSPYAYGVLDSGYK+DMS+EEA+ELARR+IYHATFRD ASGGVASVY+VGP G
Sbjct: 181 DRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPEG 240
Query: 239 WKKLSGDDVGELHYHYYPVTPSTVEQEMAE 268
W KLSGDDVGELHYHYYPV P+T EQ M E
Sbjct: 241 WTKLSGDDVGELHYHYYPVAPATAEQVMEE 270
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2
PE=1 SV=1
Length = 273
Score = 470 bits (1210), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/272 (84%), Positives = 242/272 (88%), Gaps = 2/272 (0%)
Query: 1 MKLDTSGLESTSPF--FGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTT 58
MKLDTSGLE+T P FGS E+ S+APSF LP +TDFD FQK +K AKGTTT
Sbjct: 1 MKLDTSGLETTMPVIGFGSNSEMLDGFSSAPSFDLPRTTDFDGFQKKAVEMVKPAKGTTT 60
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC
Sbjct: 61 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 120
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178
RLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG
Sbjct: 121 RLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKG 180
Query: 179 TRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG 238
RFSVGSGSPYAYGVLDSGYKFDMS+EEA+ELARR+IYHATFRD ASGGVASVY+VGP G
Sbjct: 181 DRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQG 240
Query: 239 WKKLSGDDVGELHYHYYPVTPSTVEQEMAEVA 270
W KLSGDDVGELHYHYYPV P T E M E A
Sbjct: 241 WTKLSGDDVGELHYHYYPVAPITAEHVMEEAA 272
>sp|Q54BC8|PSB5_DICDI Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5
PE=1 SV=1
Length = 272
Score = 291 bits (745), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 144/267 (53%), Positives = 190/267 (71%), Gaps = 10/267 (3%)
Query: 1 MKLDTSGLESTSPFFGSGDELCPELS--AAPSFSLPLSTDFDEFQKDT------KATLKH 52
+ +D +E + P D L ++ P F LP + + +F ++T L+
Sbjct: 2 INIDFDNIEQSQPTLY--DTLASDVKFLNTPHFELPPNANPGDFLRETFDHPSAPKALEF 59
Query: 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHR 112
A GTTTLAF++ G++V+ DS+++ G Y++S+SVKK+IEI P +LGTMAGGAADC FW R
Sbjct: 60 AHGTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWER 119
Query: 113 NLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSE 172
LG +CRL+EL NK ISV ASK+LANI+YSY+G GLS+GTMI GWD+TGP LYYVD++
Sbjct: 120 ELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPQLYYVDND 179
Query: 173 GGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVY 232
G RL G RFS GSGS YAYGVLD+G+K+DM+ EEA EL RRA+YHAT RDA SGG +VY
Sbjct: 180 GTRLHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVY 239
Query: 233 YVGPNGWKKLSGDDVGELHYHYYPVTP 259
+V +GWKK+S DD +L+ YY + P
Sbjct: 240 HVQKDGWKKISSDDCFKLYQKYYNIVP 266
>sp|Q32KL2|PSB5_BOVIN Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1
Length = 263
Score = 290 bits (742), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 141/228 (61%), Positives = 176/228 (77%), Gaps = 11/228 (4%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F+ GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEILH--GTTTLAFKFRHGVIVAADSRATAGAYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 206
GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G FSVGSGS YAYGV+D GY +D+ +EE
Sbjct: 151 GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEE 210
Query: 207 AAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 254
A +LARRAIY AT+RDA SGG S+Y+V +GW ++S D+V +LH Y
Sbjct: 211 AYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLHDKY 258
>sp|O55234|PSB5_MOUSE Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3
Length = 264
Score = 290 bits (741), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 142/232 (61%), Positives = 178/232 (76%), Gaps = 11/232 (4%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEMLH--GTTTLAFKFLHGVIVAADSRATAGAYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 206
GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YAYGV+D GY +D+ +EE
Sbjct: 151 GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEE 210
Query: 207 AAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVT 258
A +LARRAIY AT+RDA SGG ++Y+V +GW ++S D+V +LH Y V+
Sbjct: 211 AYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYSSVS 262
>sp|P28075|PSB5_RAT Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1
SV=3
Length = 263
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/233 (60%), Positives = 178/233 (76%), Gaps = 11/233 (4%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F+ GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEMLH--GTTTLAFKFQHGVIVAADSRATAGPYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 206
GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YA+GV+D GY +D+ +EE
Sbjct: 151 GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEE 210
Query: 207 AAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 259
A +LARRAIY AT+RDA SGG ++Y+V +GW ++S D+V +LH Y P
Sbjct: 211 AYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYTSSIP 263
>sp|Q5R8S2|PSB5_PONAB Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3
Length = 263
Score = 288 bits (737), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/205 (65%), Positives = 166/205 (80%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L
Sbjct: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 174
+CR++EL NK RISV ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGN 178
Query: 175 RLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYV 234
R+ G FSVGSGS YAYGV+D GY +D+ +E+A +LARRAIY AT+RDA SGG ++Y+V
Sbjct: 179 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 238
Query: 235 GPNGWKKLSGDDVGELHYHYYPVTP 259
+GW ++S D+V +LH Y TP
Sbjct: 239 REDGWIRVSSDNVADLHEKYSGSTP 263
>sp|P28074|PSB5_HUMAN Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3
Length = 263
Score = 288 bits (737), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/205 (65%), Positives = 166/205 (80%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L
Sbjct: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 174
+CR++EL NK RISV ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGN 178
Query: 175 RLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYV 234
R+ G FSVGSGS YAYGV+D GY +D+ +E+A +LARRAIY AT+RDA SGG ++Y+V
Sbjct: 179 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 238
Query: 235 GPNGWKKLSGDDVGELHYHYYPVTP 259
+GW ++S D+V +LH Y TP
Sbjct: 239 REDGWIRVSSDNVADLHEKYSGSTP 263
>sp|P34065|PSB5_CHICK Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5
PE=2 SV=2
Length = 256
Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/205 (64%), Positives = 159/205 (77%)
Query: 50 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109
L+ GTTTLAF F GV+VA DSRA+ G YI+SQ+V+K+IEINP +LGTMAGGAADC F
Sbjct: 50 LQLLHGTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSF 109
Query: 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYV 169
W R L +CR++EL NK ISV ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYV
Sbjct: 110 WERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYV 169
Query: 170 DSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
DSEG R+ G F+VGSGS YAYGVLD G + DM+ +EA ELARRAI+ A RDA SGG
Sbjct: 170 DSEGTRIPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSV 229
Query: 230 SVYYVGPNGWKKLSGDDVGELHYHY 254
+VY+VGP GW+++S DV LH Y
Sbjct: 230 TVYHVGPRGWRRVSSHDVAGLHDGY 254
>sp|P28064|PSB8_RAT Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1
SV=3
Length = 276
Score = 265 bits (677), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/237 (55%), Positives = 168/237 (70%), Gaps = 6/237 (2%)
Query: 28 APSFSLPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYI 81
AP +LP EF ++ K ++ A GTTTLAF F+ GV+VA DSRAS G YI
Sbjct: 39 APELALPRGMQPTEFLRSFGDDQERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYI 98
Query: 82 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141
++ V K+IEINPY+LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+N+
Sbjct: 99 ATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 142 LYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFD 201
+ YRGMGLS+G+MI GWD+ GPGLYYVD G RL G FS GSG+ YAYGV+DSGY+ D
Sbjct: 159 MLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQD 218
Query: 202 MSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVT 258
+S EEA +LARRAI +AT RD+ SGGV ++Y++ +GW K+ DV +L + Y T
Sbjct: 219 LSPEEAYDLARRAIVYATHRDSYSGGVVNMYHMKKDGWVKVESTDVSDLLHKYREAT 275
>sp|Q3T112|PSB8_BOVIN Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2
Length = 276
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/233 (54%), Positives = 167/233 (71%), Gaps = 6/233 (2%)
Query: 28 APSFSLPLSTDFDEFQK------DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYI 81
+P +LP EF + ++K ++ A GTTTLAF F+ GV+VA DSRAS G YI
Sbjct: 39 SPELALPRGMQPTEFFRSLGGNGESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYI 98
Query: 82 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141
++ V K+IEINPY+LGTM+G AADC +W R L +CRL+ L N RISV+ ASKLL+N+
Sbjct: 99 ATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 142 LYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFD 201
+ YRGMGLS+G+MI GWD+ GPGLYYVD G RL G FS GSG+ +AYGV+DSGY+ D
Sbjct: 159 MCQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPD 218
Query: 202 MSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 254
+SIEEA +L RRAI HAT RD+ SGGV ++Y++ +GW K+ DV +L + Y
Sbjct: 219 LSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQY 271
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1
SV=1
Length = 276
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 164/235 (69%), Gaps = 10/235 (4%)
Query: 28 APSFSLPLSTDFDEF--------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGG 79
AP ++P EF +K+ + + H GTTTLAF F+ GV+VA DSRA+ G
Sbjct: 39 APELAVPRGMQPTEFFQSLGENGEKNIRKEMVH--GTTTLAFKFQHGVIVAVDSRATAGN 96
Query: 80 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLA 139
YISS V K+IEINP +LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+
Sbjct: 97 YISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLS 156
Query: 140 NILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYK 199
N++Y YRGM LS+G+MI GWD+ GPGLYYVD G RL G FS GSGS YAYGV+DSGY+
Sbjct: 157 NMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQ 216
Query: 200 FDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 254
+S EEA EL RRAI +AT RD+ SGG+ ++Y++ +GW K+ DV EL + Y
Sbjct: 217 PSLSPEEAYELGRRAITYATHRDSYSGGIINMYHMKEDGWVKVESTDVNELLHQY 271
>sp|P28063|PSB8_MOUSE Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2
Length = 276
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/235 (54%), Positives = 164/235 (69%), Gaps = 6/235 (2%)
Query: 26 SAAPSFSLPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGG 79
+ AP +LP F ++ ++ A GTTTLAF F+ GV+VA DSRA+ G
Sbjct: 37 AQAPELALPRGMQPTAFLRSFGGDQERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGS 96
Query: 80 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLA 139
YISS + K+IEINPY+LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+
Sbjct: 97 YISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLS 156
Query: 140 NILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYK 199
N++ YRGMGLS+G+MI GWD+ GPGLYYVD G RL G FS GSG+ YAYGV+DSGY+
Sbjct: 157 NMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYR 216
Query: 200 FDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 254
D+S EEA +L RRAI +AT RD SGGV ++Y++ +GW K+ DV +L Y Y
Sbjct: 217 QDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHMKEDGWVKVESSDVSDLLYKY 271
>sp|P28062|PSB8_HUMAN Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3
Length = 276
Score = 257 bits (656), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 133/256 (51%), Positives = 172/256 (67%), Gaps = 10/256 (3%)
Query: 9 ESTSPFFGSGDELCPELSA----APSFSLPLSTDFDEFQK------DTKATLKHAKGTTT 58
ES P GSG P + +P +LP EF + + ++ A GTTT
Sbjct: 16 ESALPVAGSGRRSDPGHYSFSMRSPELALPRGMQPTEFFQSLGGDGERNVQIEMAHGTTT 75
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAF F+ GV+ A DSRAS G YIS+ V K+IEINPY+LGTM+G AADCQ+W R L +C
Sbjct: 76 LAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKEC 135
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178
RL+ L N RISV+ ASKLL+N++ YRGMGLS+G+MI GWD+ GPGLYYVD G RL G
Sbjct: 136 RLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSG 195
Query: 179 TRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG 238
FS GSG+ YAYGV+DSGY+ ++S EEA +L RRAI +AT RD+ SGGV ++Y++ +G
Sbjct: 196 NMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDG 255
Query: 239 WKKLSGDDVGELHYHY 254
W K+ DV +L + Y
Sbjct: 256 WVKVESTDVSDLLHQY 271
>sp|P30655|PSB5_SCHPO Probable proteasome subunit beta type-5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pts1 PE=3 SV=3
Length = 272
Score = 251 bits (641), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 128/227 (56%), Positives = 164/227 (72%), Gaps = 1/227 (0%)
Query: 24 ELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISS 83
++ P SL L DE K+ +K GTTTLAF ++ G++V DSRAS G I+S
Sbjct: 31 DVVPVPQSSLYLRNLTDE-TKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIAS 89
Query: 84 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILY 143
Q+VKK+IEINPY+LGT+AGGAADCQFW LG++CRLH+L NK ISV+ ASK+L+NI Y
Sbjct: 90 QTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITY 149
Query: 144 SYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 203
SY+G GLS+GTM+AG + G LYY+DS+G RLKG FSVGSGS +AYGVLDSGY++D+S
Sbjct: 150 SYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLS 209
Query: 204 IEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGEL 250
+EA LA+R+I AT RDA SGG ++Y++ NGW DV L
Sbjct: 210 KQEALYLAQRSIVAATHRDAYSGGSVNLYHIDENGWVFHGNFDVDSL 256
>sp|P30656|PSB5_YEAST Proteasome subunit beta type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE2 PE=1 SV=3
Length = 287
Score = 251 bits (641), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 130/238 (54%), Positives = 167/238 (70%), Gaps = 8/238 (3%)
Query: 20 ELCPELS----AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRA 75
L P L+ A+P L TD D D K + H GTTTLAF F+ G++VA DSRA
Sbjct: 39 RLAPSLTVPPIASPQQFLRAHTD-DSRNPDCKIKIAH--GTTTLAFRFQGGIIVAVDSRA 95
Query: 76 SMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135
+ G +++SQ+VKK+IEINP++LGTMAGGAADCQFW LG +CRLHEL K RISV AS
Sbjct: 96 TAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 155
Query: 136 KLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVL 194
K+L+N++Y Y+G GLS+GTMI G+ + GP +YYVDS+G RLKG F VGSG +AYGVL
Sbjct: 156 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVL 215
Query: 195 DSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHY 252
DS YK+D+S+E+A L +R+I A RDA SGG ++Y+V +GW DVGEL +
Sbjct: 216 DSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFW 273
>sp|A5LHX3|PSB11_HUMAN Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1
Length = 300
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 149/229 (65%), Gaps = 2/229 (0%)
Query: 23 PELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYIS 82
P L A +++P D F + L H GTTTLAF F+ GV+ AAD+R+S G Y++
Sbjct: 19 PHLPRAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVA 76
Query: 83 SQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANIL 142
+ K+I ++ ++LGT +G +ADC W+R L + RL EL + SV A+KLL+ ++
Sbjct: 77 CPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMM 136
Query: 143 YSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDM 202
YRG+ L V T + GWD +GP L+YV S+G RL+G FSVGSGSPYAYGVLD GY++DM
Sbjct: 137 SQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDM 196
Query: 203 SIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELH 251
S +EA LAR A+ HAT RDA SGG +++V +GW+ +S D L+
Sbjct: 197 STQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSRSDACVLY 245
>sp|Q8BG41|PSB11_MOUSE Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1
Length = 302
Score = 193 bits (491), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 153/243 (62%), Gaps = 4/243 (1%)
Query: 24 ELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISS 83
L A +++P D F + L H GTTTLAF F+ GV+ AAD+R+S G Y++
Sbjct: 20 HLPQAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVAC 77
Query: 84 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILY 143
+ +K+I ++ +LGT +G +ADC W+R L + RL EL + SV G +KLLA ++
Sbjct: 78 PASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMS 137
Query: 144 SYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMS 203
YRG+ L V T + GWD +GP L+YV S+G L+G FSVGSGSPYAYGVLD GY +DM+
Sbjct: 138 CYRGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMT 197
Query: 204 IEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVE 263
I+EA LAR A+ HAT RDA SGG +++V +GW+ +S D L+ ++E
Sbjct: 198 IQEAYTLARCAVAHATHRDAYSGGSVDLFHVRESGWEYVSRSDACVLYRELQKA--RSLE 255
Query: 264 QEM 266
QE+
Sbjct: 256 QEL 258
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 147 bits (372), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 128/202 (63%), Gaps = 1/202 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGNFIASKTAKKVYQIDDLVAMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ +++ G + L++N L S R + V +I G D+ GPG+Y +D
Sbjct: 65 VRLVNVESQLYKMRRNESMTIKGIATLMSNFLNSNRYYPMMVQLLIGGVDKNGPGIYSLD 124
Query: 171 SEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
+ GG ++ TR S GSGSP AYGVL+ Y+ DM+++E +LA RAI++AT RD+ASG
Sbjct: 125 ALGGSIEETRISATGSGSPMAYGVLEDQYREDMTVKEGLDLAIRAIHNATKRDSASGENI 184
Query: 230 SVYYVGPNGWKKLSGDDVGELH 251
V + +++L ++V +
Sbjct: 185 DVVVITKEAFRRLDPEEVKSIR 206
>sp|Q29576|PSB8_PIG Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8
PE=1 SV=1
Length = 104
Score = 144 bits (363), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178
RL+ L N RISV+ ASKL +N++Y YRGMGLS+G+MI GWD+ GPGLYYVD G RL G
Sbjct: 1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSG 60
Query: 179 TRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRD 222
FS GSG+ YAYGV+DSG+++D+SIEEA +L RRAI HAT RD
Sbjct: 61 NMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 104
>sp|D5EAS6|PSB_METMS Proteasome subunit beta OS=Methanohalophilus mahii (strain ATCC
35705 / DSM 5219 / SLP) GN=psmB PE=3 SV=1
Length = 210
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 126/201 (62%), Gaps = 1/201 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
KH KGTTT+ + +GV++A + RA+MG +I+S++ KKI +I+ + T AG D Q
Sbjct: 5 KHLKGTTTVGIVCSDGVVLATEKRATMGNFIASKTAKKIYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ + I++ G + LL+NIL R L V ++ G D+ GP ++ +D
Sbjct: 65 VRMISVESKLYKMRRQESITIKGLTTLLSNILGGQRYFPLMVQLLVGGVDKNGPAIFSLD 124
Query: 171 SEGGRLKGTR-FSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
+ GG ++ T+ + GSGSP AYGVL+ Y ++++E ELA RA+Y+A RD+ASG
Sbjct: 125 AMGGNIEETKAVATGSGSPMAYGVLEDRYHEGINVDEGMELAVRALYNAMKRDSASGNGI 184
Query: 230 SVYYVGPNGWKKLSGDDVGEL 250
V + +G+K++ +V ++
Sbjct: 185 DVVKITADGYKRIETGEVDKI 205
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 126/198 (63%), Gaps = 1/198 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ +++ G + L++N L R + V +I G D+ GPG+Y +D
Sbjct: 65 VRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLD 124
Query: 171 SEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
+ GG ++ TR S GSGSP AYGVL+ Y+ +M+++E +LA RAI++AT RD+ASG
Sbjct: 125 AMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENI 184
Query: 230 SVYYVGPNGWKKLSGDDV 247
V + +K+L ++V
Sbjct: 185 DVVVITKEAFKRLDPEEV 202
>sp|Q12YV7|PSB_METBU Proteasome subunit beta OS=Methanococcoides burtonii (strain DSM
6242) GN=psmB PE=3 SV=1
Length = 210
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 120/193 (62%), Gaps = 1/193 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
KH KGTTT+ + +GV++A + RA+MG +I+S++ KKI +I+ + T AG D Q
Sbjct: 5 KHLKGTTTVGIVCTDGVVLATEQRATMGHFIASKTAKKIYQIDDLVGMTTAGSVGDAQQI 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L ++ + I++ G + LL+N+L R L V +I G D+ GP +Y +D
Sbjct: 65 VRIISVESKLFKMRRQESITIKGITTLLSNMLSGQRYYPLMVQLLIGGVDKNGPAIYSLD 124
Query: 171 SEGGRLKGTR-FSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
+ GG ++ TR S GSGSP AYGVL+ Y DM++ E +LA RA+++A RD+ASG
Sbjct: 125 ALGGNIEETRAVSTGSGSPMAYGVLEDRYTEDMTVVEGVDLAIRALHNAMKRDSASGENI 184
Query: 230 SVYYVGPNGWKKL 242
V + + +++L
Sbjct: 185 DVVVITKDKYERL 197
>sp|Q2FQL8|PSB_METHJ Proteasome subunit beta OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=psmB PE=3 SV=1
Length = 209
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 118/198 (59%), Gaps = 1/198 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ +F+ GV++A++ RA+MG IS+++ KKI +I P + T AGG D Q R
Sbjct: 9 KGTTTVGIVFETGVVLASEKRATMGYLISNKTAKKIYQIAPRIGLTTAGGVGDAQQLARL 68
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ ++ L+E+ +RISV AS LL+NIL+ R V +I G DETGP L+ VD+ G
Sbjct: 69 MTVEANLYEIRRGKRISVQAASTLLSNILHGNRMFPFYVQLLIGGVDETGPVLFSVDAVG 128
Query: 174 GRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVY 232
G K + GSGSP AYGVL+ Y M A ELA RA+ A RDA SG +V
Sbjct: 129 GTGKEDGIVATGSGSPMAYGVLEDRYTLGMDERSAIELAIRALRSAIKRDAGSGEGVAVV 188
Query: 233 YVGPNGWKKLSGDDVGEL 250
+ + + +LS +++ L
Sbjct: 189 VITEDSYHELSDEEISVL 206
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 116/191 (60%), Gaps = 1/191 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ +FK+G+++A + RA+MG I+S+ KK+ ++ + T AGG D Q R
Sbjct: 8 KGTTTIGIVFKDGIILATEKRATMGSMIASKRAKKVYQVADRIGMTTAGGVGDAQQLARI 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ ++C L+++ R ISV +S LL+N L RG V ++ G D TGP +Y VD+ G
Sbjct: 68 MSVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYVQLLVGGVDATGPSVYSVDAMG 127
Query: 174 GRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVY 232
G + + + GSGSP AYGVL+ YK D++ +EA ELA RA+ A RD+ASG V
Sbjct: 128 GATRESDIVATGSGSPMAYGVLEDRYKKDLTEDEAIELAIRALRAAMRRDSASGEGIHVV 187
Query: 233 YVGPNGWKKLS 243
+ + + +LS
Sbjct: 188 IITKDAYSELS 198
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 125/198 (63%), Gaps = 1/198 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ +++ G + L++N L + R + V +I G D+ GP +Y +D
Sbjct: 65 VRLVSVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGPAIYSLD 124
Query: 171 SEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
GG ++ TR S GSGSP AYGVL+ Y+ D++++E +LA RAI++AT RD+ASG
Sbjct: 125 PMGGSIEETRISATGSGSPMAYGVLEDQYREDIAVKEGLDLAIRAIHNATKRDSASGENI 184
Query: 230 SVYYVGPNGWKKLSGDDV 247
V + +K+L ++V
Sbjct: 185 DVVVITKEAFKRLDPEEV 202
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 125/198 (63%), Gaps = 1/198 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ +++ G + L++N L + R + V +I G D+ GP +Y +D
Sbjct: 65 VRLVSVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGPAIYSLD 124
Query: 171 SEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
+ GG ++ TR S GSGSP AYGVL+ YK D++++E +LA RAI++A RD+ASG
Sbjct: 125 AMGGSIEETRISATGSGSPMAYGVLEDQYKEDIAVKEGLDLAIRAIHNAMKRDSASGENI 184
Query: 230 SVYYVGPNGWKKLSGDDV 247
V + +K+L ++V
Sbjct: 185 DVVVITKEAFKRLDPEEV 202
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 121/201 (60%), Gaps = 1/201 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ + K+GV++A + RA+MG +I+S+ KKI I + T AG D QF
Sbjct: 8 KVYKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFL 67
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+E+ + + +V + LL+NIL S R V ++ G D+ GP +Y +D
Sbjct: 68 ARLISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFVQLLVGGVDKRGPSIYSID 127
Query: 171 SEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
GG ++ + GSGSP AYGVL+ Y ++++++ ELA RAIY A RD+ASG
Sbjct: 128 LLGGAIEEIDIVATGSGSPTAYGVLEDRYTPEITVDDGVELAVRAIYSAMRRDSASGDGI 187
Query: 230 SVYYVGPNGWKKLSGDDVGEL 250
V + +G+ +LS ++V ++
Sbjct: 188 DVVKITKDGYFELSKEEVDKI 208
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 115/187 (61%), Gaps = 1/187 (0%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ I + V++AAD RA+ G I+S+ VKKI+ ++ Y+ T++G AD Q L
Sbjct: 25 GTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDVL 84
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 174
+ RL+E+ NK + SV + LL+NIL+S + V ++ G+D T P LY +D G
Sbjct: 85 REEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYIVQLIVGGYD-TQPRLYTLDLFGS 143
Query: 175 RLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYV 234
+ + GSGSP AYGVL+ Y+ D+S+EEA ++A AI A RDAASG A V +
Sbjct: 144 ITEDKYTATGSGSPIAYGVLEERYREDLSVEEAIKVATTAIRSAVLRDAASGDGADVVVI 203
Query: 235 GPNGWKK 241
GP G+++
Sbjct: 204 GPQGYEE 210
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 116/195 (59%), Gaps = 1/195 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + K+GV++A + RA+MG +I+S+ KKI +I + T AG D QF R
Sbjct: 8 KGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYKITDRIAMTTAGSVGDAQFLARL 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ ++ L+ + + +V + L++N+L S R V +I G D+TG +Y +D G
Sbjct: 68 IKVETNLYTIRKEEEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGVDKTGAKIYSIDPIG 127
Query: 174 GRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVY 232
G ++ + GSGSP AYGVL+ Y+ D++++EA ELA RAIY A RD+ASG V
Sbjct: 128 GAIEEIDIVATGSGSPMAYGVLEDNYRKDINVDEAVELAIRAIYSAMKRDSASGDGIDVV 187
Query: 233 YVGPNGWKKLSGDDV 247
+ + +L+ +++
Sbjct: 188 KITEKEYVELTPEEI 202
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ I +GV++A + RA+MG +I+S+ +KI I T+AG D Q
Sbjct: 5 KQYKGTTTIGIICDQGVVLATERRATMGNFIASRDAQKIYRITDNAAMTIAGSVGDGQRL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R L ++ +L EL +S+ S LL+NIL R V +I G D+ GP +Y +D
Sbjct: 65 ARILQVEAKLFELRRHGSMSINALSMLLSNILAEMRYAPYYVQVLIGGLDKAGPKIYSLD 124
Query: 171 SEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASG 226
GGR++ +F S GSGSP AYGVL+ YK MS+EE ELA RA+ A RD+ASG
Sbjct: 125 PLGGRIEEEKFVSTGSGSPIAYGVLEDRYKPGMSVEEGVELAARALESAMKRDSASG 181
>sp|D3E0A3|PSB_METRM Proteasome subunit beta OS=Methanobrevibacter ruminantium (strain
ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=psmB PE=3
SV=1
Length = 207
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 118/194 (60%), Gaps = 3/194 (1%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
+GTTT+ K+GV+ A++ RASMG ++ + +KI +I+ ++ T+AG AD Q +
Sbjct: 8 EGTTTVGITCKDGVVFASERRASMGNLVAHKVAEKIFKIDNHIAATIAGSVADAQTLMKV 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ + L+ L N + IS+ A+ + +NIL+S V T+I G D+TG +Y +D+ G
Sbjct: 68 ISAETSLYRLRNGKDISLEAAAAVSSNILHSSPAY---VQTLIGGVDDTGASIYSLDAAG 124
Query: 174 GRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYY 233
G +K T S GSGS +AYGVL+ + D+++EEA E+A RAI AT RD SG V
Sbjct: 125 GMIKDTFISTGSGSTFAYGVLEDRFYEDITVEEATEVAIRAIKAATERDTFSGNGFLVAN 184
Query: 234 VGPNGWKKLSGDDV 247
V +G+K L ++V
Sbjct: 185 VTKDGFKMLEKEEV 198
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 115/199 (57%), Gaps = 2/199 (1%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RASMG I+ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRA 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSE 172
L + RL+++ + IS + LL+NIL+S R +I G+D T GP L+ +D
Sbjct: 65 LIAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLTDGPKLFSLDPL 124
Query: 173 GGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASV 231
GG + F S GSGSP AYGVL++ Y DMSIEE +LA +A+ A RD SG SV
Sbjct: 125 GGMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSIEEGLKLALKALKSAMERDTYSGNGVSV 184
Query: 232 YYVGPNGWKKLSGDDVGEL 250
+ G K LS +++ +L
Sbjct: 185 AVITKEGVKLLSDEEITKL 203
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 110/187 (58%), Gaps = 3/187 (1%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ I G+++A + RA+MG I+S+ +KI ++ + T+AG D Q
Sbjct: 4 KQYKGTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDGQRL 63
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R L + +L EL +S+ S LL+N+L+ YR + V ++ G D++GP L+ +D
Sbjct: 64 ARMLQAESKLFELRRHGPMSINALSMLLSNLLWEYRIFYIQV--LVGGVDKSGPKLFSLD 121
Query: 171 SEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
GGR+ +F S GSGSP AYGVL+ YK DMS+E+ ELA +A+ A RD+ASG
Sbjct: 122 PAGGRITEVKFSSTGSGSPLAYGVLEDRYKQDMSVEQGVELAAKALESAMKRDSASGNGM 181
Query: 230 SVYYVGP 236
+ P
Sbjct: 182 QFCVITP 188
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 125/220 (56%), Gaps = 18/220 (8%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ + K+GV++A + RA+MG +I+S++ KKI +I M T AG D QF
Sbjct: 7 KIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFL 66
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + I+ L+E+ +R+ +V + L +N+L SYR V +I G D G +Y +D
Sbjct: 67 ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSID 126
Query: 171 SEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASG-GV 228
GG ++ + GSGS AYGVL+ + ++ ++EA ELA RAIY A RD+ASG G+
Sbjct: 127 PIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGI 186
Query: 229 ASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAE 268
V K++ D+ +Y +P VEQ +A+
Sbjct: 187 DVV---------KITEDE-------FYQYSPEEVEQILAK 210
>sp|A3CUS9|PSB_METMJ Proteasome subunit beta OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmB PE=3 SV=1
Length = 214
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ IF GV++A + RA+MG I+S+ KKI +I P + T AGG D Q R
Sbjct: 10 KGTTTVGLIFDGGVVLATEMRATMGNMIASKRAKKIYQITPRIGLTTAGGVGDAQQLVRI 69
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
L ++C L E+ + +SV AS LL+N L R V ++ G+D+ GP +Y VD+ G
Sbjct: 70 LQVECNLFEMRRGKTMSVGAASTLLSNYLNQNRYYPYYVQLLMGGFDDEGPSVYSVDAMG 129
Query: 174 GRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVY 232
G K + GSGSP+AYGVL+ Y+ M ++A +LA RA+ A RD+ASG V
Sbjct: 130 GATKEEDIVATGSGSPFAYGVLEDQYRAGMKEDDAKDLAVRAVRSAMRRDSASGEDIMVV 189
Query: 233 YVGPNGWKK 241
+ + +++
Sbjct: 190 VITKDKYEE 198
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 1/194 (0%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ +F GV++A + RA+MG I+S+ KK+ +I + T+AGG D Q R +
Sbjct: 11 GTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARII 70
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 174
++C L+++ R I+V AS LL+N L R V ++ G D+ GP +Y VD+ GG
Sbjct: 71 TVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYVQLLVGGIDDHGPSVYSVDAMGG 130
Query: 175 RLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYY 233
K S GSGSP AYGVL+ Y+ M+ +EA ELA RA+ A RDA SG V
Sbjct: 131 ATKEEDIVSTGSGSPMAYGVLEDRYRPGMNEDEAVELAVRALRSAMKRDAGSGEGIHVVV 190
Query: 234 VGPNGWKKLSGDDV 247
+ + ++ +S + +
Sbjct: 191 ITKDRYENVSEETI 204
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 113/194 (58%), Gaps = 1/194 (0%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ +F GV++A + RA+MG I+S+ KK+ I + T+AGG D Q R +
Sbjct: 11 GTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDAQQLVRII 70
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 174
++C L+E+ ++ISV A+ +L+N L R V ++ G D +GP +Y VD+ GG
Sbjct: 71 NVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYVQLLVGGVDTSGPSVYSVDAAGG 130
Query: 175 -RLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYY 233
L+ S GSGS AYGVL+ +K +M+ EEA ELA RA+ A RD+ASG +V
Sbjct: 131 ATLEENFVSTGSGSLTAYGVLEDRFKPNMTEEEAIELAVRALRAAMLRDSASGEGYNVVI 190
Query: 234 VGPNGWKKLSGDDV 247
+ ++ L D +
Sbjct: 191 ITQEKFEYLPEDKI 204
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 1/194 (0%)
Query: 50 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109
L+ KGTTT+ +F++ V++AAD RA+ G +++ + KKII+I YM T AG AD Q
Sbjct: 10 LRALKGTTTVGIVFRDFVVLAADRRATAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQM 69
Query: 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYV 169
L +E+ NKRR+S+ A++ L+ IL+S + V ++ G+D T P LY +
Sbjct: 70 LAEWLANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKFYPYIVQLLLGGYD-TQPRLYNI 128
Query: 170 DSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
D G + + GSGSP A GV++ Y ++S+EEA ELA+RA+ + RD +G
Sbjct: 129 DWFGSVTEEKYVATGSGSPTAIGVIEDQYSPNLSMEEAVELAKRAVASSIRRDTFTGNGV 188
Query: 230 SVYYVGPNGWKKLS 243
V +G + +++ S
Sbjct: 189 DVVVIGKDFYREYS 202
>sp|O27270|PSB_METTH Proteasome subunit beta OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmB PE=3 SV=1
Length = 210
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 1/195 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ K+GV+ A + RASMG I+ ++ KI +I+ ++ T+AG AD Q +
Sbjct: 8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKY 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
L + L+ + N +IS+ A+ L ANIL+S R V T++ G DE G +Y +D G
Sbjct: 68 LKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSG 127
Query: 174 GRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASG-GVASVY 232
G + S GSGSP AYGVL+ Y ++ ++EA ++A RAI A RD SG G+
Sbjct: 128 GMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVAT 187
Query: 233 YVGPNGWKKLSGDDV 247
G++ LS +++
Sbjct: 188 VTEEEGFRMLSEEEI 202
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 1/185 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ ++ V++AAD RA+ G +I + V+KI++I+ YM T AG AD Q
Sbjct: 12 KGTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADV 71
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
L ++ + +EL +K+R+SV A+ L+N+L+S R V ++ G+D T P LY +D G
Sbjct: 72 LRMEVKNYELFHKKRMSVKAAATFLSNVLHSARFYPYIVQLLVGGFD-TAPRLYSLDWFG 130
Query: 174 GRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYY 233
+ GSGSP A GV+++ Y +M +EE LA RA++ AT RD ASG V
Sbjct: 131 TVAEEEFLVTGSGSPMAVGVIEAEYNPNMDLEELVNLAVRAVFAATRRDTASGEGIDVAV 190
Query: 234 VGPNG 238
+ NG
Sbjct: 191 IDRNG 195
>sp|A5UM14|PSB_METS3 Proteasome subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmB PE=3 SV=1
Length = 204
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 115/200 (57%), Gaps = 3/200 (1%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K +GTTT+ K+GV+ A++ RASMG ++ + +KI +IN +++ T+AG D Q
Sbjct: 4 KILEGTTTVGITCKDGVVFASERRASMGNLVAHKVAEKIFKINDHIVTTIAGSVGDAQNL 63
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
+ + + L+++ N +ISV A+ + ANIL R + V T++ G D P LY +D
Sbjct: 64 MKIIEAEVSLYQMRNNDKISVKAAASVTANIL---RSGPMYVQTLLGGMDGDKPSLYSLD 120
Query: 171 SEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVAS 230
GG ++ T S GSGS AYGVL+ Y +++ +E E+A RAI A+ RD SG
Sbjct: 121 PAGGMIEDTYISTGSGSIVAYGVLEDRYHEEITTDEGLEIAVRAIKAASERDTFSGNGYL 180
Query: 231 VYYVGPNGWKKLSGDDVGEL 250
V V +G++ L + V ++
Sbjct: 181 VAKVTKDGFEMLDKEKVNDI 200
>sp|A0B5B1|PSB_METTP Proteasome subunit beta OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=psmB PE=3 SV=1
Length = 207
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 120/198 (60%), Gaps = 1/198 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + GV++A++SRA+MG +I+S++ KKI +I+ + T AG D Q R
Sbjct: 6 KGTTTVGIVCDGGVVLASESRATMGSFIASRTAKKIYQIDDLVGLTTAGVVGDAQALVRM 65
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ + RL+ + +++ + LL+NIL + R V ++ G D+ GP ++ +D+ G
Sbjct: 66 IQAEARLYRMQRGEPLTIKAITSLLSNILSARRYFPFLVQLVVGGVDKMGPKIFSLDALG 125
Query: 174 GRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVY 232
G+++ S GSGSP AYGVL+S YK +SI++ + L RA++ A RD+ASG ++
Sbjct: 126 GQIEEHDIVSTGSGSPIAYGVLESLYKPGLSIQDGSVLCVRAVHTAMKRDSASGNGIALV 185
Query: 233 YVGPNGWKKLSGDDVGEL 250
+ + ++++ +V E+
Sbjct: 186 RITKDRYEEVPTSEVEEI 203
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 118/202 (58%), Gaps = 7/202 (3%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + +GV++AAD RA MG I+ + VKKI I+ Y+ T AG AD Q
Sbjct: 9 KGTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIVDL 68
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYS----YRGMGLSVGTMIAGWDETGPGLYYV 169
+ + RL+EL + R IS + +++++L+S +R V ++ G+++ P LY +
Sbjct: 69 MRAEARLYELRHNRMISARALANMISHVLHSSLKAFRPY--LVQLIVGGFNDDDPALYNL 126
Query: 170 DSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASG-GV 228
D G ++ + GSGSP AYGVL++ Y+ MS+++A E+A RA+ A RD +G GV
Sbjct: 127 DPSGSIIEEDYTATGSGSPTAYGVLEAEYEEGMSLDDAIEVAVRAVKSALERDTGTGEGV 186
Query: 229 ASVYYVGPNGWKKLSGDDVGEL 250
V G+++L ++V +L
Sbjct: 187 TVVTITREEGYRELPEEEVEKL 208
>sp|A6UT20|PSB_META3 Proteasome subunit beta OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=psmB PE=3 SV=1
Length = 217
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 115/207 (55%), Gaps = 2/207 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
++ KGTTT+ + +G+++A D RA+MG I+ + KK+ +I+ YM T+AG D Q
Sbjct: 10 EYMKGTTTVGIVCNDGIVLATDKRATMGNLIADKEAKKLYKIDDYMAMTIAGSVGDAQSL 69
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYV 169
R + + L++L I + LL+N+L+ R + +I G+D G L+ +
Sbjct: 70 VRIISAEANLYKLRTGNNIPPHSCAMLLSNVLHGSRHFPFLIQLIIGGYDTIHGAKLFSL 129
Query: 170 DSEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGV 228
D+ GG + T F+ GSGSP A+GVL+ YK DM+I + LA +++ A RDA SG
Sbjct: 130 DAVGGLNEETSFTATGSGSPTAFGVLEEEYKKDMTINKGKLLAIKSLTAAMKRDAFSGNG 189
Query: 229 ASVYYVGPNGWKKLSGDDVGELHYHYY 255
S+ + NG K S +++ EL Y
Sbjct: 190 ISLAVIDKNGVKIYSDEEIEELSNILY 216
>sp|B1L6S7|PSB1_KORCO Proteasome subunit beta 1 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB1 PE=3 SV=1
Length = 206
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 108/197 (54%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ FK GV+VA+D RA+ G +++S+S K ++I Y + T++G AD Q+ N
Sbjct: 4 KGTTTVGVKFKNGVIVASDKRATSGTFVASKSAVKTLKITDYAVATISGLVADGQYLVNN 63
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ L+ L +R +SV G +++LA +L YR L ++ G D G L+ VD G
Sbjct: 64 VRTIADLYSLDTERPLSVRGIARILAFLLRRYRPYFLLAQLIVGGVDREGAHLFNVDPFG 123
Query: 174 GRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYY 233
+ + GSGSP A V++SGY DM E A L ++ A RDAA+G V
Sbjct: 124 TLTEEDYLATGSGSPVAISVIESGYSPDMDRESALRLVISSMTAALSRDAATGDGIDVVV 183
Query: 234 VGPNGWKKLSGDDVGEL 250
+ G LS +++ +L
Sbjct: 184 IDDRGVNFLSREEISDL 200
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RASMG ++ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASMGNLVADKEAKKLYKIDDYIALTIAGSVGDAQAIVRL 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSE 172
L + +L+++ + IS + LL+NIL+S R +I G+D G L+ +D
Sbjct: 65 LTAEAKLYKMRTGKNISPLACATLLSNILHSNRYFPFLTQLIIGGYDLLEGAKLFSLDPL 124
Query: 173 GGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASV 231
GG + F+ GSGSP AYGVL++GY DM +EE +LA +A+ A RD SG S+
Sbjct: 125 GGMNEEKTFTATGSGSPIAYGVLEAGYDRDMPVEEGIKLALKALKSAMERDTYSGNGISL 184
Query: 232 YYVGPNGWKKLSGDDVGEL 250
+ G K +++ ++
Sbjct: 185 AVITKEGVKIFEDEEIEKI 203
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RAS+G ++ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSE 172
L + +L+++ R I + LL+NIL+S R +I G+D G L+ +D
Sbjct: 65 LIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPL 124
Query: 173 GGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASV 231
GG + F+ GSGSP AYGVL++GY DMS+EE +LA A+ A RD SG S+
Sbjct: 125 GGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISL 184
Query: 232 YYVGPNGWKKLSGDDVGEL 250
+ +G K +++ ++
Sbjct: 185 AVITKDGVKIFEDEEIEKI 203
>sp|A3DN27|PSB2_STAMF Proteasome subunit beta 2 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB2 PE=3 SV=1
Length = 208
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 1/190 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K TTT+ + + V++AAD RA+ G ++ + VKKII I+ Y+ T++G AD +
Sbjct: 5 KIVSKTTTVGIVVGDYVVLAADKRATAGSLVAHKRVKKIIRIDDYIAMTISGLVADAEII 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMG-LSVGTMIAGWDETGPGLYYV 169
R ++L R I V+ + L+ IL +Y M V ++ G+D+ GP L+Y+
Sbjct: 65 AEQARFIARKYKLELGRPIKVSALASNLSIILNAYLRMSPYIVQLLLGGYDDNGPHLFYI 124
Query: 170 DSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVA 229
D G + + GSGSP A+GVL+ Y+ D+S++EA ELA +A+ AT RD SG
Sbjct: 125 DLFGSLSEEKYMATGSGSPTAFGVLEEEYRSDLSLDEAKELAFKAVSAATKRDGFSGEGV 184
Query: 230 SVYYVGPNGW 239
+ +GPN +
Sbjct: 185 DIVVIGPNTY 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,218,170
Number of Sequences: 539616
Number of extensions: 4226295
Number of successful extensions: 10944
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 10289
Number of HSP's gapped (non-prelim): 452
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)