Query 024133
Match_columns 272
No_of_seqs 202 out of 1230
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0175 20S proteasome, regula 100.0 5.2E-56 1.1E-60 379.4 17.9 238 31-268 41-284 (285)
2 PTZ00488 Proteasome subunit be 100.0 4.3E-51 9.4E-56 361.5 28.3 233 25-257 2-241 (247)
3 COG0638 PRE1 20S proteasome, a 100.0 3.6E-51 7.8E-56 360.0 27.6 219 37-256 12-234 (236)
4 PTZ00246 proteasome subunit al 100.0 5.1E-51 1.1E-55 362.9 26.7 229 28-258 4-245 (253)
5 cd03750 proteasome_alpha_type_ 100.0 5.4E-51 1.2E-55 357.4 25.9 216 32-251 4-226 (227)
6 KOG0176 20S proteasome, regula 100.0 1.6E-49 3.4E-54 328.0 19.1 214 34-253 14-240 (241)
7 PRK03996 proteasome subunit al 100.0 1.3E-48 2.9E-53 345.1 26.3 222 29-254 10-239 (241)
8 TIGR03633 arc_protsome_A prote 100.0 1.2E-48 2.6E-53 341.8 25.5 214 29-246 3-224 (224)
9 cd03761 proteasome_beta_type_5 100.0 1.4E-47 3E-52 326.7 25.7 188 56-243 1-188 (188)
10 cd03752 proteasome_alpha_type_ 100.0 1.7E-47 3.8E-52 332.1 24.7 203 30-234 4-213 (213)
11 cd03751 proteasome_alpha_type_ 100.0 4.4E-47 9.5E-52 329.3 23.9 203 29-234 4-212 (212)
12 cd03749 proteasome_alpha_type_ 100.0 1E-46 2.2E-51 326.9 24.4 199 32-235 4-211 (211)
13 cd03756 proteasome_alpha_arche 100.0 2E-46 4.3E-51 325.0 24.3 202 30-235 3-210 (211)
14 cd03755 proteasome_alpha_type_ 100.0 3.4E-46 7.5E-51 322.6 23.6 198 31-234 3-207 (207)
15 cd03753 proteasome_alpha_type_ 100.0 6.8E-46 1.5E-50 322.1 24.6 200 31-234 3-213 (213)
16 cd03759 proteasome_beta_type_3 100.0 9.5E-46 2.1E-50 317.1 24.8 188 54-241 2-191 (195)
17 TIGR03690 20S_bact_beta protea 100.0 2.5E-45 5.5E-50 319.8 25.6 204 54-257 1-217 (219)
18 cd03754 proteasome_alpha_type_ 100.0 1.2E-45 2.6E-50 321.0 23.1 200 32-234 5-215 (215)
19 cd01911 proteasome_alpha prote 100.0 1.8E-45 3.8E-50 318.5 23.5 200 31-234 3-209 (209)
20 cd03758 proteasome_beta_type_2 100.0 5.4E-45 1.2E-49 312.0 25.1 187 56-242 2-191 (193)
21 TIGR03634 arc_protsome_B prote 100.0 7.8E-45 1.7E-49 308.6 24.8 185 55-239 1-185 (185)
22 cd03757 proteasome_beta_type_1 100.0 5.9E-45 1.3E-49 316.1 23.8 188 54-241 7-204 (212)
23 cd03764 proteasome_beta_archea 100.0 1.5E-44 3.2E-49 307.8 25.6 188 56-243 1-188 (188)
24 cd03760 proteasome_beta_type_4 100.0 1.4E-44 3E-49 310.3 24.8 190 54-243 1-196 (197)
25 cd03763 proteasome_beta_type_7 100.0 1.9E-44 4.1E-49 307.5 25.4 188 56-244 1-188 (189)
26 cd03762 proteasome_beta_type_6 100.0 1.5E-43 3.4E-48 301.5 25.2 185 56-241 1-186 (188)
27 cd01912 proteasome_beta protea 100.0 2.5E-42 5.5E-47 293.8 25.3 187 56-242 1-188 (189)
28 KOG0181 20S proteasome, regula 100.0 1.8E-43 4E-48 291.4 16.1 222 28-253 5-232 (233)
29 cd03765 proteasome_beta_bacter 100.0 4.7E-42 1E-46 301.2 25.5 197 56-254 1-224 (236)
30 TIGR03691 20S_bact_alpha prote 100.0 5.1E-42 1.1E-46 300.3 23.3 196 46-251 20-228 (228)
31 KOG0183 20S proteasome, regula 100.0 6.7E-43 1.4E-47 291.9 15.7 223 29-257 4-236 (249)
32 KOG0178 20S proteasome, regula 100.0 7.3E-42 1.6E-46 285.1 19.6 223 34-258 11-244 (249)
33 KOG0184 20S proteasome, regula 100.0 2.5E-41 5.4E-46 283.9 17.1 221 35-258 15-242 (254)
34 PF00227 Proteasome: Proteasom 100.0 8.3E-40 1.8E-44 278.0 22.6 181 54-234 3-190 (190)
35 cd01906 proteasome_protease_Hs 100.0 1.4E-39 3E-44 274.8 23.3 179 56-234 1-182 (182)
36 KOG0863 20S proteasome, regula 100.0 6.5E-39 1.4E-43 270.6 18.5 222 37-263 15-245 (264)
37 KOG0182 20S proteasome, regula 100.0 2E-38 4.3E-43 264.7 20.6 218 37-257 18-245 (246)
38 KOG0174 20S proteasome, regula 100.0 1.6E-38 3.4E-43 262.1 16.0 198 53-252 17-218 (224)
39 KOG0179 20S proteasome, regula 100.0 2.9E-37 6.2E-42 257.4 18.9 188 54-241 28-227 (235)
40 KOG0173 20S proteasome, regula 100.0 3.1E-37 6.7E-42 263.5 18.0 191 47-240 31-221 (271)
41 KOG0177 20S proteasome, regula 100.0 1.6E-36 3.5E-41 249.4 18.2 189 56-244 2-193 (200)
42 PRK05456 ATP-dependent proteas 100.0 6.1E-34 1.3E-38 238.7 19.5 166 55-233 1-171 (172)
43 cd01913 protease_HslV Protease 100.0 1.1E-33 2.4E-38 235.9 19.5 165 56-233 1-170 (171)
44 KOG0180 20S proteasome, regula 100.0 3.2E-33 6.9E-38 226.7 17.9 188 53-240 6-195 (204)
45 KOG0185 20S proteasome, regula 100.0 1E-33 2.2E-38 239.7 15.3 200 53-252 39-245 (256)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 6.2E-33 1.3E-37 231.3 19.3 165 56-233 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 1.7E-28 3.7E-33 200.9 21.3 161 56-216 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.6 4.1E-15 8.9E-20 120.4 12.3 170 54-235 3-176 (178)
49 COG3484 Predicted proteasome-t 99.4 4.1E-12 8.9E-17 106.6 12.6 183 56-240 2-204 (255)
50 PF10584 Proteasome_A_N: Prote 97.1 0.00048 1E-08 38.2 2.1 19 31-49 3-23 (23)
51 PF09894 DUF2121: Uncharacteri 96.8 0.088 1.9E-06 44.7 14.9 149 56-237 2-180 (194)
52 COG4079 Uncharacterized protei 95.5 0.41 8.9E-06 42.1 12.6 166 56-252 2-198 (293)
53 KOG3361 Iron binding protein i 64.2 7.2 0.00016 31.3 2.9 80 167-257 71-150 (157)
54 cd06404 PB1_aPKC PB1 domain is 49.8 73 0.0016 23.5 5.9 55 198-258 16-72 (83)
55 KOG2947 Carbohydrate kinase [C 39.0 70 0.0015 28.7 5.2 59 154-214 223-288 (308)
56 COG3193 GlcG Uncharacterized p 36.0 1E+02 0.0022 25.0 5.3 36 199-238 5-40 (141)
57 KOG3571 Dishevelled 3 and rela 35.2 1.4E+02 0.003 29.5 6.9 43 128-175 312-355 (626)
58 PF07499 RuvA_C: RuvA, C-termi 31.7 21 0.00046 23.0 0.6 32 182-213 12-44 (47)
59 PRK09732 hypothetical protein; 31.5 1.3E+02 0.0028 24.1 5.3 36 200-239 5-40 (134)
60 PF07277 SapC: SapC; InterPro 30.4 1.4E+02 0.0031 25.9 5.9 87 162-252 97-201 (221)
61 PF03928 DUF336: Domain of unk 29.5 81 0.0018 24.8 3.8 35 201-239 2-36 (132)
62 PF14593 PH_3: PH domain; PDB: 27.7 58 0.0013 24.9 2.6 17 162-178 36-52 (104)
63 KOG3652 Uncharacterized conser 25.1 1.5E+02 0.0032 30.4 5.3 116 99-220 191-306 (1215)
64 KOG0083 GTPase Rab26/Rab37, sm 24.5 1.1E+02 0.0024 24.8 3.7 39 53-95 7-45 (192)
65 COG4990 Uncharacterized protei 24.0 1.4E+02 0.0031 25.4 4.3 61 110-174 100-169 (195)
66 PRK02260 S-ribosylhomocysteina 21.2 1.8E+02 0.0039 24.1 4.4 58 163-220 71-149 (158)
No 1
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-56 Score=379.37 Aligned_cols=238 Identities=66% Similarity=1.098 Sum_probs=224.7
Q ss_pred CCCCCCCCcchhhH-----h-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCCh
Q 024133 31 FSLPLSTDFDEFQK-----D-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (272)
Q Consensus 31 ~~~p~~~~g~~~q~-----e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~ 104 (272)
..+|++.++..|.. + +...+++.||||++|++|++|||+|+|+|++.|++|.++.++||++||++++.+++|.+
T Consensus 41 ~~~P~~~~p~~~l~~~~~~~~~~~~i~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgA 120 (285)
T KOG0175|consen 41 LALPPGESPQTFLFAITDDETAGVLIKFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGA 120 (285)
T ss_pred ccCCCCCCchhhhhhccCCCcccceeeecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcc
Confidence 55777654433322 2 56678899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEc
Q 024133 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVG 184 (272)
Q Consensus 105 aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG 184 (272)
+||++|.+.+.++|++|++++++.|+|.++++.|+|++|+||.+|++++++|||||+.||.||+||..|+....+.|++|
T Consensus 121 ADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVG 200 (285)
T KOG0175|consen 121 ADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVG 200 (285)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEcCCCCEecCceEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhhCCCCCchhHH
Q 024133 185 SGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQ 264 (272)
Q Consensus 185 ~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~~~~~~~~~~~ 264 (272)
||+.+|+++||+.|++|||.+||.+|++++|.+|.+||.+||+.|++++|+++||.+++..|+.+++++|.+..+++.|.
T Consensus 201 SGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~~~~~e~~~~~~~~ 280 (285)
T KOG0175|consen 201 SGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELHYHYYEVAPPEAEK 280 (285)
T ss_pred CCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHHHHHHHhcCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHH
Q 024133 265 EMAE 268 (272)
Q Consensus 265 ~~~~ 268 (272)
.|.+
T Consensus 281 ~~~~ 284 (285)
T KOG0175|consen 281 DMEN 284 (285)
T ss_pred hccC
Confidence 6653
No 2
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4.3e-51 Score=361.51 Aligned_cols=233 Identities=56% Similarity=0.989 Sum_probs=219.0
Q ss_pred ccCCCCCCCCCCCCcchhhHh-------HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEE
Q 024133 25 LSAAPSFSLPLSTDFDEFQKD-------TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYML 97 (272)
Q Consensus 25 ~~~~~~~~~p~~~~g~~~q~e-------a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~ 97 (272)
|+...+|+-|+...+.-|..| +-++..+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~ 81 (247)
T PTZ00488 2 FCGPEHFEHPPGAHPGDFLAEYTFDHGDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLL 81 (247)
T ss_pred CCCccccccCCCCCHHHHHHHhhhccccCCcccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEE
Confidence 455678888888666666666 3345556799999999999999999999999999999999999999999999
Q ss_pred EEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceee
Q 024133 98 GTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177 (272)
Q Consensus 98 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~ 177 (272)
+++||..+|++.+.++++.+++.|+++++++|+++.+|++|++++|.+|++|+.+++||||||++||+||++||+|++.+
T Consensus 82 ~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~ 161 (247)
T PTZ00488 82 GTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTRLH 161 (247)
T ss_pred EEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred cCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhhCCC
Q 024133 178 GTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPV 257 (272)
Q Consensus 178 ~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~~~~ 257 (272)
++++|+|+|+.+++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|++.++++||++++++++..
T Consensus 162 ~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~~~~~ 241 (247)
T PTZ00488 162 GNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQKYAAE 241 (247)
T ss_pred cCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988843
No 3
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-51 Score=360.00 Aligned_cols=219 Identities=38% Similarity=0.507 Sum_probs=211.1
Q ss_pred CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHH
Q 024133 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (272)
Q Consensus 37 ~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (272)
|+|+++|+| ++++++ ..|+|+|||+++||||||+|+|.++|.++..++++|||+|+|||+|++||+.+|++.|+++++
T Consensus 12 p~g~l~q~e~a~~a~~-~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r 90 (236)
T COG0638 12 PEGRLFQVEYALEAVK-RGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYAR 90 (236)
T ss_pred CCCchHHHHHHHHHHH-cCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHH
Confidence 699999999 999998 445999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC--CcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHH
Q 024133 116 IKCRLHELANKRRISVTGASKLLANILYSYRG--MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGV 193 (272)
Q Consensus 116 ~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~--~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~ 193 (272)
.+++.|++.++++++++.+++++++++|.+|. +||+|++||+|+|+++|+||++||+|++.+++++|+|+|+..++++
T Consensus 91 ~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~ 170 (236)
T COG0638 91 AEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYGF 170 (236)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcCCcHHHHHH
Confidence 99999999999999999999999999999998 8999999999999877999999999999999999999999999999
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcC-CCeEEcCcchHHHHHHhhCC
Q 024133 194 LDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGP-NGWKKLSGDDVGELHYHYYP 256 (272)
Q Consensus 194 Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~k-dg~~~l~~~ei~~~~~~~~~ 256 (272)
||+.|+++|+.|||++++++||+.+.+||..++++++|+++++ +|++.++++++..++..++.
T Consensus 171 Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T COG0638 171 LEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSE 234 (236)
T ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 79999999999999887764
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.1e-51 Score=362.93 Aligned_cols=229 Identities=19% Similarity=0.201 Sum_probs=213.8
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+..+.| ||||+||+| |++||+ +|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++++++|..+
T Consensus 4 ~yd~~~~~fsp~Grl~QvEYA~~av~--~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 81 (253)
T PTZ00246 4 RYDSRTTTFSPEGRLYQVEYALEAIN--NASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTA 81 (253)
T ss_pred ccCCCCceECCCCEEhHHHHHHHHHH--hCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHH
Confidence 455666667 899999999 999998 9999999999999999999999998777777899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCc
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTR 180 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~ 180 (272)
|++.+.+.++.+++.|++.+++++++..+++.+++.+|.++ .+|++|++||+|||+ .||+||++||+|++.++++
T Consensus 82 D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~ 161 (253)
T PTZ00246 82 DANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKA 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceE
Confidence 99999999999999999999999999999999999988763 347889999999995 7899999999999999999
Q ss_pred eEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC------eEEcCcchHHHHHHhh
Q 024133 181 FSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG------WKKLSGDDVGELHYHY 254 (272)
Q Consensus 181 ~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg------~~~l~~~ei~~~~~~~ 254 (272)
+|+|+|+.+++++||+.|+++||++||++++++||..+..||..++++++|++++++| |++++++||++++.++
T Consensus 162 ~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~ 241 (253)
T PTZ00246 162 TAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKV 241 (253)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875 8999999999999998
Q ss_pred CCCC
Q 024133 255 YPVT 258 (272)
Q Consensus 255 ~~~~ 258 (272)
+...
T Consensus 242 ~~~~ 245 (253)
T PTZ00246 242 TQEY 245 (253)
T ss_pred hhhh
Confidence 7544
No 5
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.4e-51 Score=357.35 Aligned_cols=216 Identities=21% Similarity=0.300 Sum_probs=203.6
Q ss_pred CCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHH
Q 024133 32 SLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109 (272)
Q Consensus 32 ~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 109 (272)
.+..| ||||+||+| |++|++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||..+|++.
T Consensus 4 ~~t~fsp~Grl~QveyA~~av~--~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 4 SLTTFSPSGKLVQIEYALAAVS--SGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCceECCCCeEhHHHHHHHHHH--cCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 34455 799999999 999998 99999999999999999999998 58888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhc--c--CCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEcc
Q 024133 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSY--R--GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGS 185 (272)
Q Consensus 110 l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~--R--~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~ 185 (272)
+.++++.+++.|++.++++++++.++++|++++|.+ | ..|+++++||+|||++||+||++||+|++.+++++|+|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~ 160 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGK 160 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECC
Confidence 999999999999999999999999999999999765 2 347889999999998899999999999999999999999
Q ss_pred ChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC-CeEEcCcchHHHHH
Q 024133 186 GSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN-GWKKLSGDDVGELH 251 (272)
Q Consensus 186 gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd-g~~~l~~~ei~~~~ 251 (272)
|+.+++++||++|+++||++||++++++||+.+.+||. ++.+++|++++++ |+++++++||++++
T Consensus 161 g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 161 NYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 99999999999999999999999999999999998874 8899999999995 89999999999986
No 6
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-49 Score=328.02 Aligned_cols=214 Identities=25% Similarity=0.376 Sum_probs=202.5
Q ss_pred CCCCCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHH
Q 024133 34 PLSTDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHR 112 (272)
Q Consensus 34 p~~~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~ 112 (272)
+..|+||+||+| |++|+| .|+|.|||+.++|||||+++|+++ .+..++++.||++|++||+|++||+.+|++.+++
T Consensus 14 TfSpEGRlfQVEYaieAik--LGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve 90 (241)
T KOG0176|consen 14 TFSPEGRLFQVEYAIEAIK--LGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVE 90 (241)
T ss_pred ccCCCceeeehhhHHHHHh--cCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHH
Confidence 344799999999 999999 999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhc-----------cCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 113 NLGIKCRLHELANKRRISVTGASKLLANILYSY-----------RGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 113 ~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~-----------R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
++|.+|+.|.+.|+++|+++.+.+.+|++...+ || ++|++|+||+|++||+||+.||+|+++.|++-
T Consensus 91 ~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRP--FGValliAG~D~~gpqL~h~dPSGtf~~~~AK 168 (241)
T KOG0176|consen 91 RARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRP--FGVALLIAGHDETGPQLYHLDPSGTFIRYKAK 168 (241)
T ss_pred HHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCC--cceEEEEeeccCCCceEEEeCCCCceEEecce
Confidence 999999999999999999999999999988654 55 55999999999999999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC-CeEEcCcchHHHHHHh
Q 024133 182 SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN-GWKKLSGDDVGELHYH 253 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd-g~~~l~~~ei~~~~~~ 253 (272)
|||+|+.-+.+.|.+.|+++|+++||+.+++..|+..++ +..+..|++|.+++++ +++.++++|+++.+..
T Consensus 169 AIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMe-eKl~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 169 AIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVME-EKLNSNNVEVAVVTPEGEFHIYTPEEVEQVIKR 240 (241)
T ss_pred eccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH-HhcCccceEEEEEcccCceEecCHHHHHHHHhc
Confidence 999999999999999999999999999999999999887 6678889999999997 7999999999998754
No 7
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.3e-48 Score=345.07 Aligned_cols=222 Identities=25% Similarity=0.370 Sum_probs=206.5
Q ss_pred CCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhh
Q 024133 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (272)
Q Consensus 29 ~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD 106 (272)
+.++...| ||||++|+| |.+|++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||..+|
T Consensus 10 y~~~~~~fsp~Gr~~Q~eya~~av~--~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (241)
T PRK03996 10 YDRAITIFSPDGRLYQVEYAREAVK--RGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVAD 86 (241)
T ss_pred cCCCCceECCCCeEhHHHHHHHHHH--hCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHH
Confidence 34444555 799999999 999998 99999999999999999999999 57788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceE
Q 024133 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS 182 (272)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~A 182 (272)
++.+.++++.+++.|++.++++++++.+++++++.+|.++ ..|+++++||+|||++||+||++||+|++.+++++|
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a 166 (241)
T PRK03996 87 ARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATA 166 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEE
Confidence 9999999999999999999999999999999999998663 237889999999998899999999999999999999
Q ss_pred EccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC--eEEcCcchHHHHHHhh
Q 024133 183 VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG--WKKLSGDDVGELHYHY 254 (272)
Q Consensus 183 iG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg--~~~l~~~ei~~~~~~~ 254 (272)
+|+|+..++++|++.|+++||++||++++++||..+.++ ..++++++|++++++| ++.++++|+++++.++
T Consensus 167 ~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 167 IGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred ECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999875 6688999999999986 9999999999998775
No 8
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.2e-48 Score=341.75 Aligned_cols=214 Identities=26% Similarity=0.409 Sum_probs=200.7
Q ss_pred CCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhh
Q 024133 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (272)
Q Consensus 29 ~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD 106 (272)
+.+..+.| ||||++|+| |++|++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||..+|
T Consensus 3 ~~~~~~~f~p~Grl~Qieya~~av~--~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 79 (224)
T TIGR03633 3 YDRAITVFSPDGRLYQVEYAREAVK--RGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVAD 79 (224)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHH--cCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHh
Confidence 44556666 799999999 999998 99999999999999999999998 57788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceE
Q 024133 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS 182 (272)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~A 182 (272)
++.+.+.++.+++.|++.++++++++.+++++++++|.+. ..|+++++||+|+|+++|+||.+||.|++.+++++|
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a 159 (224)
T TIGR03633 80 ARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATA 159 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEE
Confidence 9999999999999999999999999999999999997662 237889999999998899999999999999999999
Q ss_pred EccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC--eEEcCcch
Q 024133 183 VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG--WKKLSGDD 246 (272)
Q Consensus 183 iG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg--~~~l~~~e 246 (272)
+|+|+.+++++|++.|+++|+.+||++++++||..+.+ |..+++.++|++++++| |++++++|
T Consensus 160 ~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 160 IGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 99999999999999999999999999999999999887 88999999999999987 99999876
No 9
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-47 Score=326.72 Aligned_cols=188 Identities=73% Similarity=1.222 Sum_probs=184.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAI 215 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al 215 (272)
+++++++|.+|.+|+++++||+|||++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++.+||
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l 160 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAI 160 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEcCCCeEEcC
Q 024133 216 YHATFRDAASGGVASVYYVGPNGWKKLS 243 (272)
Q Consensus 216 ~~a~~rd~~sg~~v~v~ii~kdg~~~l~ 243 (272)
..+.+||..++++++|++|+++|+++++
T Consensus 161 ~~~~~rd~~sg~~~~v~ii~~~g~~~~~ 188 (188)
T cd03761 161 YHATHRDAYSGGNVNLYHVREDGWRKIS 188 (188)
T ss_pred HHHHHhcccCCCCeEEEEEcCCceEEcC
Confidence 9999999999999999999999998864
No 10
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-47 Score=332.08 Aligned_cols=203 Identities=21% Similarity=0.245 Sum_probs=189.3
Q ss_pred CCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhH
Q 024133 30 SFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADC 107 (272)
Q Consensus 30 ~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~ 107 (272)
.+.+..| ||||+||+| |++|++ +|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|+|++||..+|+
T Consensus 4 d~~~~~fsp~Grl~Qveya~~a~~--~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (213)
T cd03752 4 DSRTTIFSPEGRLYQVEYAMEAIS--HAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDA 81 (213)
T ss_pred CCCCceECCCCEEhHHHhHHHHHh--cCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhH
Confidence 3444455 799999999 999998 999999999999999999999998777777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhc----cCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceE
Q 024133 108 QFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSY----RGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFS 182 (272)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~----R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~A 182 (272)
+.+.++++.+++.|+++++++|+++.+++.|+.++|.+ +..|+++++||+|||+ .||+||.+||+|++.+++++|
T Consensus 82 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a 161 (213)
T cd03752 82 NILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATA 161 (213)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEE
Confidence 99999999999999999999999999999999998766 2237889999999995 689999999999999999999
Q ss_pred EccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 024133 183 VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 183 iG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii 234 (272)
+|+|+.+++++||+.|+++||.+||++++++||..+.+||..++.+++|.++
T Consensus 162 ~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 162 IGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred ECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999999999999999874
No 11
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-47 Score=329.35 Aligned_cols=203 Identities=18% Similarity=0.187 Sum_probs=188.4
Q ss_pred CCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhh
Q 024133 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (272)
Q Consensus 29 ~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD 106 (272)
+.+.++.| ||||+||+| |++|++ +|+|+|||+++||||||+|+|.++ .++.+++++|||+|++++++++||..+|
T Consensus 4 yd~~~t~fsp~Grl~Qveya~~a~~--~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 4 YDLSASTFSPDGRVFQVEYANKAVE--NSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred ccCCCceECCCCcchHHHHHHHHHh--cCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHh
Confidence 45556666 799999999 999998 999999999999999999999986 7777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcCCCCeeEEEeCCCceeecCceE
Q 024133 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS 182 (272)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~A 182 (272)
++.+.++++.+++.|++.++++++++.++++|++++|.++. .|+++++||+|||++||+||++||+|++.+++++|
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a 160 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCA 160 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEE
Confidence 99999999999999999999999999999999999887632 37889999999998899999999999999999999
Q ss_pred EccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 024133 183 VGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 183 iG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii 234 (272)
+|+|+..++++||+.|+++||++||+++++++|+.+.+.+.....+|+|.++
T Consensus 161 ~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 161 IGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999999999866677788998764
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-46 Score=326.88 Aligned_cols=199 Identities=24% Similarity=0.265 Sum_probs=184.4
Q ss_pred CCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHH
Q 024133 32 SLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109 (272)
Q Consensus 32 ~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 109 (272)
..+.| ||||+||+| |++|++ +|+|+|||+++||||||+|+|.+.+ + .++.+||++|++++++++||..+|++.
T Consensus 4 ~~t~fsp~Grl~Qveya~~av~--~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 4 DVTTWSPQGRLFQVEYAMEAVK--QGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCceECCCCeEeHHHHHHHHHh--cCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHH
Confidence 34445 799999999 999998 9999999999999999999998764 3 456799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhc----cCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEcc
Q 024133 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSY----RGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGS 185 (272)
Q Consensus 110 l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~----R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~ 185 (272)
+.++++.+++.|+++++++++++.+++.+++++|.+ +..|++|++||+|||++||+||++||+|++.+++++|+|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~ 158 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGA 158 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECC
Confidence 999999999999999999999999999999988763 2337889999999998899999999999999999999999
Q ss_pred ChhHHHHHHHccCC--CCCCHHHHHHHHHHHHHHHHhhcc-cCCCcEEEEEEc
Q 024133 186 GSPYAYGVLDSGYK--FDMSIEEAAELARRAIYHATFRDA-ASGGVASVYYVG 235 (272)
Q Consensus 186 gs~~a~~~Le~~~~--~~ms~eeai~l~~~al~~a~~rd~-~sg~~v~v~ii~ 235 (272)
|+.+++++||++|+ ++||.+||+++++++|+.++.+|. .++.+|+|++++
T Consensus 159 g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 159 RSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999 599999999999999999999887 899999999984
No 13
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-46 Score=325.00 Aligned_cols=202 Identities=28% Similarity=0.407 Sum_probs=189.0
Q ss_pred CCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhH
Q 024133 30 SFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADC 107 (272)
Q Consensus 30 ~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~ 107 (272)
.+++..| ||||++|+| |.+|++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..+|+
T Consensus 3 ~~~~~~fsp~G~l~Q~eya~~av~--~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 3 DRAITVFSPDGRLYQVEYAREAVK--RGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCceECCCCeEhHHHHHHHHHH--cCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 3445555 799999999 999998 99999999999999999999998 577778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEE
Q 024133 108 QFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV 183 (272)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~Ai 183 (272)
+.+.+.++.+++.|++.++++++++.+++++++++|.++ ..|+++++||+|||++||+||++||+|++.+++++|+
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~ 159 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAI 159 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEE
Confidence 999999999999999999999999999999999998762 2478899999999998999999999999999999999
Q ss_pred ccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEc
Q 024133 184 GSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVG 235 (272)
Q Consensus 184 G~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~ 235 (272)
|+|+..++++||+.|+++|+.+||++++++||..+.++|. ++.+++|++++
T Consensus 160 G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 160 GSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 9999999999999999999999999999999999988775 99999999986
No 14
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-46 Score=322.62 Aligned_cols=198 Identities=20% Similarity=0.313 Sum_probs=183.7
Q ss_pred CCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHH
Q 024133 31 FSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQ 108 (272)
Q Consensus 31 ~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~ 108 (272)
+..+.| ||||+||+| |++|++ +|+|+|||+++||||||+|+|.+. .++.+++.+||++|++++++++||..+|++
T Consensus 3 ~~~~~fsp~Gr~~Qveya~~av~--~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 3 RAITVFSPDGHLFQVEYAQEAVR--KGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCceECCCCeEeHHHHHHHHHH--cCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 344555 799999999 999998 999999999999999999999875 677778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEE
Q 024133 109 FWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSV 183 (272)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~Ai 183 (272)
.+.++++.+++.|++.++++++++.+++++++++|.+. ..|+++++||+|||+ +||+||++||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999997662 347889999999996 5899999999999999999999
Q ss_pred ccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 024133 184 GSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 184 G~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii 234 (272)
|+|+.+++++||++|+++||.+||++++++||..+.+ .++.+++|+++
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999999999999999999999999986 68889999874
No 15
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-46 Score=322.08 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=186.1
Q ss_pred CCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHH
Q 024133 31 FSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQ 108 (272)
Q Consensus 31 ~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~ 108 (272)
++.+.| ||||++|+| |++|++ +|+|+|||+++||||||+|+|.+. .++..++.+||++|++++++++||..+|++
T Consensus 3 ~~~~~f~p~G~~~Q~eya~~a~~--~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 3 RGVNTFSPEGRLFQVEYAIEAIK--LGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCccCCCCCeEhHHHHHHHHHh--cCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 445555 799999999 999998 999999999999999999999985 667778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc---------CCcceeEEEEEEEcCCCCeeEEEeCCCceeecC
Q 024133 109 FWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR---------GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT 179 (272)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R---------~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~ 179 (272)
.+.+.++.+++.|++.++++++++.+++++++++|.+. ..|+++++||+|||++||+||.+||+|++.+++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~ 159 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCD 159 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeeccc
Confidence 99999999999999999999999999999999998752 247889999999999899999999999999999
Q ss_pred ceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 024133 180 RFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 180 ~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii 234 (272)
++|+|+++.+++++|++.|+++||.+||++++++||+.+.+++ .++.+++|+++
T Consensus 160 ~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 160 AKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred EEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 9999999999999999999999999999999999999987754 78889999874
No 16
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-46 Score=317.09 Aligned_cols=188 Identities=27% Similarity=0.295 Sum_probs=179.8
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhH
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~ 133 (272)
+|+|+|||+++||||||+|+|.+++.++.+++++|||+|++|+++++||..+|++.+.++++.+++.|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 79999999999999999999999877777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecC-ceEEccChhHHHHHHHccCCCCCCHHHHHHHH
Q 024133 134 ASKLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGT-RFSVGSGSPYAYGVLDSGYKFDMSIEEAAELA 211 (272)
Q Consensus 134 la~~ls~~l~~~R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~-~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~ 211 (272)
+|++|++++|.+|..|+++++||+|||+ .||+||++||+|++..+. +.|+|+|+.+++++||+.|+++||.+||++++
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 161 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETI 161 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999999999988889999999999996 469999999999998888 67999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEcCCCeEE
Q 024133 212 RRAIYHATFRDAASGGVASVYYVGPNGWKK 241 (272)
Q Consensus 212 ~~al~~a~~rd~~sg~~v~v~ii~kdg~~~ 241 (272)
++||+.+.+||..++++++|++|+++|+++
T Consensus 162 ~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~ 191 (195)
T cd03759 162 SQALLSAVDRDALSGWGAVVYIITKDKVTT 191 (195)
T ss_pred HHHHHHHHhhCcccCCceEEEEEcCCcEEE
Confidence 999999999999999999999999999854
No 17
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.5e-45 Score=319.82 Aligned_cols=204 Identities=27% Similarity=0.400 Sum_probs=190.4
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhH
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~ 133 (272)
+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|++||..+|++.+.++++.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC---CcceeEEEEEEEcC--CCCeeEEEeCCCc-eeecCceEEccChhHHHHHHHccCCCCCCHHHH
Q 024133 134 ASKLLANILYSYRG---MGLSVGTMIAGWDE--TGPGLYYVDSEGG-RLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEA 207 (272)
Q Consensus 134 la~~ls~~l~~~R~---~p~~v~~iiaG~D~--~gp~Ly~iDp~G~-~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eea 207 (272)
++++|++++|.++. .|+++++||+|||+ ++|+||++||+|+ +..++++|+|+|+.+++++||+.|+++||.+||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 99999999987532 36889999999995 4699999999995 666688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCc-------EEEEEEcCCCeEEcCcchHHHHHHhhCCC
Q 024133 208 AELARRAIYHATFRDAASGGV-------ASVYYVGPNGWKKLSGDDVGELHYHYYPV 257 (272)
Q Consensus 208 i~l~~~al~~a~~rd~~sg~~-------v~v~ii~kdg~~~l~~~ei~~~~~~~~~~ 257 (272)
++++++||..+.+||..+++. ++|++++++||++++++||++++.++...
T Consensus 161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~~~~~~ 217 (219)
T TIGR03690 161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELARAIVES 217 (219)
T ss_pred HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHHHHHhc
Confidence 999999999999999887774 39999999999999999999999887654
No 18
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-45 Score=321.05 Aligned_cols=200 Identities=22% Similarity=0.208 Sum_probs=182.3
Q ss_pred CCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHH
Q 024133 32 SLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109 (272)
Q Consensus 32 ~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 109 (272)
++..| ||||+||+| |++|++ .+|+|+|||+++||||||+|+|.+. .++..++.+|||+|+++++|++||+.+|++.
T Consensus 5 ~~~~fsp~Grl~Qveya~~a~~-~~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 82 (215)
T cd03754 5 HITIFSPEGRLYQVEYAFKAVK-NAGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTHLFRITDEIGCVMTGMIADSRS 82 (215)
T ss_pred CCeeECCCCeEeHHHhHHHHHh-cCCccEEEEEeCCEEEEEEeccccc-cccCCcccCceEEEcCCEEEEEEechhhHHH
Confidence 33444 799999999 999997 3588999999999999999999986 5666668999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhc--cC--CcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEc
Q 024133 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSY--RG--MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVG 184 (272)
Q Consensus 110 l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~--R~--~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG 184 (272)
+.+++|.+++.|+++++++|+++.+|+++++++|.+ |. .|+++++||+|||+ +||+||++||+|++.+++++|+|
T Consensus 83 l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G 162 (215)
T cd03754 83 QVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAG 162 (215)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEEC
Confidence 999999999999999999999999999999986554 32 27889999999995 68999999999999999999999
Q ss_pred cChhHHHHHHHccCCCC--C--CHHHHHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 024133 185 SGSPYAYGVLDSGYKFD--M--SIEEAAELARRAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 185 ~gs~~a~~~Le~~~~~~--m--s~eeai~l~~~al~~a~~rd~~sg~~v~v~ii 234 (272)
+|+..++++||+.|+++ | |.|||++++++||..+.+||. ++.+++|.++
T Consensus 163 ~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 163 VKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred CCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 99999999999999995 7 999999999999999999995 4889999875
No 19
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.8e-45 Score=318.54 Aligned_cols=200 Identities=26% Similarity=0.341 Sum_probs=186.7
Q ss_pred CCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHH
Q 024133 31 FSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQ 108 (272)
Q Consensus 31 ~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~ 108 (272)
+.+..| ||||++|+| |+++++ +|+|+|||+++||||||+|+|.+. .++..++.+||++|++++++++||..+|++
T Consensus 3 ~~~~~f~~~G~~~q~eya~~~~~--~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 3 RSITTFSPEGRLFQVEYALEAVK--NGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCccCCCCCEEeHHHHHHHHHH--cCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 445556 799999999 999998 999999999999999999999996 566778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcCC-CCeeEEEeCCCceeecCceEE
Q 024133 109 FWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSV 183 (272)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~~-gp~Ly~iDp~G~~~~~~~~Ai 183 (272)
.+.+.++..++.|++.++++++++.+|++++++++.+. ..|+.+++||+|||++ ||+||.+||.|++.+++++++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999997552 2378899999999975 899999999999999999999
Q ss_pred ccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 024133 184 GSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 184 G~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii 234 (272)
|+|+.+++++|++.|+++||.+||++++++||..+..||. ++..++|+++
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999999998 9999999874
No 20
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.4e-45 Score=311.97 Aligned_cols=187 Identities=27% Similarity=0.331 Sum_probs=179.5
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
+|+|||+++||||||+|+|.++|.++.+++++|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-cC-CcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHH
Q 024133 136 KLLANILYSY-RG-MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELAR 212 (272)
Q Consensus 136 ~~ls~~l~~~-R~-~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~ 212 (272)
+++++++|.+ |. .|+++++||+|||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++++.
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~ 161 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMK 161 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 9999999765 32 48999999999996 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEcCCCeEEc
Q 024133 213 RAIYHATFRDAASGGVASVYYVGPNGWKKL 242 (272)
Q Consensus 213 ~al~~a~~rd~~sg~~v~v~ii~kdg~~~l 242 (272)
+|+..+.+||..++++++|++|+++|++++
T Consensus 162 ~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 162 KCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 999999999999999999999999999864
No 21
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=7.8e-45 Score=308.64 Aligned_cols=185 Identities=44% Similarity=0.626 Sum_probs=180.9
Q ss_pred CceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHH
Q 024133 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (272)
Q Consensus 55 Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~l 134 (272)
|+|+|||+++||||||+|+|.+.|.++.+++++|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHH
Q 024133 135 SKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRA 214 (272)
Q Consensus 135 a~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~a 214 (272)
++++++++|.+|..|+.+++||+|||++||+||++||+|++.++++.|+|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~ 160 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRA 160 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999998777899999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCcEEEEEEcCCCe
Q 024133 215 IYHATFRDAASGGVASVYYVGPNGW 239 (272)
Q Consensus 215 l~~a~~rd~~sg~~v~v~ii~kdg~ 239 (272)
|..+.+||..++++++|++++++|+
T Consensus 161 l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 161 IKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9999999999999999999999985
No 22
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-45 Score=316.05 Aligned_cols=188 Identities=27% Similarity=0.306 Sum_probs=181.5
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhH
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~ 133 (272)
+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.
T Consensus 7 ~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~ 86 (212)
T cd03757 7 NGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEA 86 (212)
T ss_pred CCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHH
Confidence 89999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcceeEEEEEEEcCC-CCeeEEEeCCCceeecCceEEccChhHHHHHHHccCC---------CCCC
Q 024133 134 ASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYK---------FDMS 203 (272)
Q Consensus 134 la~~ls~~l~~~R~~p~~v~~iiaG~D~~-gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~---------~~ms 203 (272)
+++++++++|.+|.+|+++++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.|+ ++||
T Consensus 87 la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms 166 (212)
T cd03757 87 IAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLS 166 (212)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCC
Confidence 99999999999887789999999999964 5999999999999999999999999999999999985 8999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEE
Q 024133 204 IEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKK 241 (272)
Q Consensus 204 ~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~ 241 (272)
.+||++++++||+.+.+||..++++++|++|+++|++.
T Consensus 167 ~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~ 204 (212)
T cd03757 167 LEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEE 204 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999865
No 23
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-44 Score=307.81 Aligned_cols=188 Identities=45% Similarity=0.633 Sum_probs=183.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAI 215 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al 215 (272)
+++++++|.+|.+|+.+++||||||+++|+||.+||+|++.++++.|+|+|+.+++++|++.|+++||.+||++++++||
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l 160 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAI 160 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999998889999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEcCCCeEEcC
Q 024133 216 YHATFRDAASGGVASVYYVGPNGWKKLS 243 (272)
Q Consensus 216 ~~a~~rd~~sg~~v~v~ii~kdg~~~l~ 243 (272)
+.+.+||..++++++|++++++|+++++
T Consensus 161 ~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 161 KSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred HHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 9999999999999999999999998763
No 24
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-44 Score=310.31 Aligned_cols=190 Identities=26% Similarity=0.322 Sum_probs=180.7
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHH-HHHHhhCCcCCHh
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCR-LHELANKRRISVT 132 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~-~~~~~~~~~i~v~ 132 (272)
.|+|+|||+++||||||+|+|.++|.++.+++++|||+|+++++++++|..+|++.+.++++.+++ .|++.++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999998899999999999999999999999999999999999999987 5778899999999
Q ss_pred HHHHHHHHHHHhcc--CCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCC--CCCHHHH
Q 024133 133 GASKLLANILYSYR--GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKF--DMSIEEA 207 (272)
Q Consensus 133 ~la~~ls~~l~~~R--~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~--~ms~eea 207 (272)
.+++++++++|.+| ..||++++||||||+ +||+||++||+|++.++++.|+|+|+.+++++||+.|++ +||.+||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 99999999998876 358899999999996 689999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcC
Q 024133 208 AELARRAIYHATFRDAASGGVASVYYVGPNGWKKLS 243 (272)
Q Consensus 208 i~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~ 243 (272)
++++++||..+.+||..++++++|++|+++|+++-.
T Consensus 161 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 196 (197)
T cd03760 161 RALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEG 196 (197)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCC
Confidence 999999999999999999999999999999987654
No 25
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-44 Score=307.51 Aligned_cols=188 Identities=33% Similarity=0.466 Sum_probs=182.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++++|||+|+++++++++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAI 215 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al 215 (272)
+++++.+|.++. |+++++||||||++||+||.+||+|++.++++.|+|+|+.+++++|+++|+++||.+||++++++||
T Consensus 81 ~~l~~~l~~~~~-p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l 159 (189)
T cd03763 81 TMLKQHLFRYQG-HIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAI 159 (189)
T ss_pred HHHHHHHHHcCC-ccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 999999998865 7889999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEcCCCeEEcCc
Q 024133 216 YHATFRDAASGGVASVYYVGPNGWKKLSG 244 (272)
Q Consensus 216 ~~a~~rd~~sg~~v~v~ii~kdg~~~l~~ 244 (272)
+.+.+||..++++++|++|+++|++...|
T Consensus 160 ~~~~~rd~~~~~~~~v~ii~~~g~~~~~~ 188 (189)
T cd03763 160 EAGIFNDLGSGSNVDLCVITKDGVEYLRN 188 (189)
T ss_pred HHHHHhcCcCCCceEEEEEcCCcEEEecC
Confidence 99999999999999999999999987755
No 26
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-43 Score=301.50 Aligned_cols=185 Identities=31% Similarity=0.514 Sum_probs=178.5
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
+|+|||+++||||||+|+|.++|.++.+++++||++|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRA 214 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~a 214 (272)
+++++++|.+|. |+++++||||||+ +||+||++||+|++.++++.++|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~~~-~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~a 159 (188)
T cd03762 81 SLFKNLCYNYKE-MLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNA 159 (188)
T ss_pred HHHHHHHHhccc-cceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 999999999874 4889999999996 78999999999999999888889999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCcEEEEEEcCCCeEE
Q 024133 215 IYHATFRDAASGGVASVYYVGPNGWKK 241 (272)
Q Consensus 215 l~~a~~rd~~sg~~v~v~ii~kdg~~~ 241 (272)
|+.+.+||+.++++++|++|+++|+++
T Consensus 160 l~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 160 LSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHHhccccCCCEEEEEECCCCEEE
Confidence 999999999999999999999999975
No 27
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-42 Score=293.83 Aligned_cols=187 Identities=46% Similarity=0.660 Sum_probs=181.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRA 214 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~a 214 (272)
+++++++|.+|..|+.+++||||||+ ++|+||.+||+|++.+++++|+|+++.+++++|++.|+++||.+||++++.+|
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~ 160 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 99999999998888999999999997 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCcEEEEEEcCCCeEEc
Q 024133 215 IYHATFRDAASGGVASVYYVGPNGWKKL 242 (272)
Q Consensus 215 l~~a~~rd~~sg~~v~v~ii~kdg~~~l 242 (272)
|..+.+||..++++++|++++++|++..
T Consensus 161 l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 161 IDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 9999999999999999999999998754
No 28
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=291.44 Aligned_cols=222 Identities=21% Similarity=0.284 Sum_probs=209.1
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.++|+++.| |+|+|.|+| |+.||+ +|.+.|||+-.||||||++++..+ .+....++.||++|.++|+|.+||+.+
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~--~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgp 81 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVV--NGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGP 81 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHh--CCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCC
Confidence 578999888 699999999 999998 999999999999999999998775 888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccCC----cceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGM----GLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~~----p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
|++.+++..|+.++.|...|++++|+..+.+.++.++|+|+.. |+++++++||||+++|.||.+||+|+++.|++.
T Consensus 82 D~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkat 161 (233)
T KOG0181|consen 82 DYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKAT 161 (233)
T ss_pred ceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhh
Confidence 9999999999999999999999999999999999999998321 456999999999999999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHh
Q 024133 182 SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYH 253 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~ 253 (272)
|+|.+...++.+||++|+++|.+++++..++..|++..+- ..+.++++|.++..++|++++++||++++..
T Consensus 162 A~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~feg-e~~~~nieigv~~~~~F~~lt~~eI~d~l~~ 232 (233)
T KOG0181|consen 162 AMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEG-EMTAKNIEIGVCGENGFRRLTPAEIEDYLAS 232 (233)
T ss_pred hhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcc-ccccCceEEEEecCCceeecCHHHHHHHHhc
Confidence 9999999999999999999999999999999999998874 4688899999999999999999999999864
No 29
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.7e-42 Score=301.20 Aligned_cols=197 Identities=20% Similarity=0.253 Sum_probs=176.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEec----CcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCC-cCC
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEIN----PYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR-RIS 130 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~----~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~-~i~ 130 (272)
|.+|||+++||||||+|+|.+.+ ++..++.+||++|+ +||+|++||..+|++.+++++|.+++.|++++++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 56899999999999999999875 44445799999998 8999999999999999999999999999999999 799
Q ss_pred HhHHHHHHHHHHHhc----c------CCcceeEEEEEEEc-CCCCeeEEEeCCCceeecCc----eEEccChhHHHHHHH
Q 024133 131 VTGASKLLANILYSY----R------GMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTR----FSVGSGSPYAYGVLD 195 (272)
Q Consensus 131 v~~la~~ls~~l~~~----R------~~p~~v~~iiaG~D-~~gp~Ly~iDp~G~~~~~~~----~AiG~gs~~a~~~Le 195 (272)
++.+|++++++++.. . ..|++|++||+||| +.||+||++||+|++.++++ +|+|. +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999987651 2 34678999999999 57899999999999999954 79996 699999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEE-----cCcch--HHHHHHhh
Q 024133 196 SGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKK-----LSGDD--VGELHYHY 254 (272)
Q Consensus 196 ~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~-----l~~~e--i~~~~~~~ 254 (272)
++|+++||+|||++++++||..++.||..++++|+|++|+++|++. ++.+| ..++-+.|
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~~~~~~~~~~~ 224 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDDPYFAMIRKAW 224 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865 66666 55555555
No 30
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5.1e-42 Score=300.29 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=178.8
Q ss_pred HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhh
Q 024133 46 TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELAN 125 (272)
Q Consensus 46 a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~ 125 (272)
|++|++ +|+|+|||+++||||||+|++. ++.+|||+|+|||+|+++|+.+|++.++++++.+++.|++.+
T Consensus 20 A~kav~--~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~ 89 (228)
T TIGR03691 20 ARKGIA--RGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSY 89 (228)
T ss_pred HHHHHH--cCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 999998 8999999999999999999972 468999999999999999999999999999999999999999
Q ss_pred C-CcCCHhHHHHHHHHHHHhc---cCCcceeEEEEEEEcC--CCCeeEEEeCCCceeecC-ceEEccChhHHHHHHHccC
Q 024133 126 K-RRISVTGASKLLANILYSY---RGMGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGT-RFSVGSGSPYAYGVLDSGY 198 (272)
Q Consensus 126 ~-~~i~v~~la~~ls~~l~~~---R~~p~~v~~iiaG~D~--~gp~Ly~iDp~G~~~~~~-~~AiG~gs~~a~~~Le~~~ 198 (272)
+ .+++++.+|+++++.++.+ |..||+|++|++|||+ +||+||++||+|++.+++ ++|+|+|+..++++||++|
T Consensus 90 ~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y 169 (228)
T TIGR03691 90 DRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESY 169 (228)
T ss_pred CCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhc
Confidence 8 6899999999888877642 2345679999999984 689999999999999976 6999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH--hhcccCCCcEEEEEEcCCC----eEEcCcchHHHHH
Q 024133 199 KFDMSIEEAAELARRAIYHAT--FRDAASGGVASVYYVGPNG----WKKLSGDDVGELH 251 (272)
Q Consensus 199 ~~~ms~eeai~l~~~al~~a~--~rd~~sg~~v~v~ii~kdg----~~~l~~~ei~~~~ 251 (272)
+++||.+||++++++||..+. +||..++.+++|.++++++ |++++++||++++
T Consensus 170 ~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 170 RDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 999999999999999999995 4677899999999999754 9999999999874
No 31
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-43 Score=291.95 Aligned_cols=223 Identities=20% Similarity=0.295 Sum_probs=205.0
Q ss_pred CCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhh
Q 024133 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (272)
Q Consensus 29 ~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD 106 (272)
+...++.| |||+|||+| |++||+ +|+|+||++++++|||+.+++... .|...+...||..+++|+++++||+.+|
T Consensus 4 ydraltvFSPDGhL~QVEYAqEAvr--kGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQEAVR--KGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred cccceEEECCCCCEEeeHhHHHHHh--cCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCcc
Confidence 45566777 799999999 999999 999999999999999999998774 8889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcCCC-CeeEEEeCCCceeecCce
Q 024133 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~~g-p~Ly~iDp~G~~~~~~~~ 181 (272)
++.+++++|-+|+.|++....+++++.++++|+.+.|.|+. .|+++++||+|+|++| |.||.+||+|.+.+|++.
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~ 160 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKAN 160 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhcc
Confidence 99999999999999999999999999999999999998722 1455889999999876 999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCC--CCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC-eEEcCcchHHHHHHhhCCC
Q 024133 182 SVGSGSPYAYGVLDSGYKFD--MSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG-WKKLSGDDVGELHYHYYPV 257 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~--ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg-~~~l~~~ei~~~~~~~~~~ 257 (272)
|+|.++..+..+||++|.++ .+..++++|++++|.+... ..+.++++.++++++ ++.++.++|+.+...++.+
T Consensus 161 aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq---s~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~E 236 (249)
T KOG0183|consen 161 AIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ---SGGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQE 236 (249)
T ss_pred ccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhh---cCCCeeEEEEEecCCceeecCHHHHHHHHHHHHHH
Confidence 99999999999999999876 7889999999999999875 456799999999987 9999999999999988854
No 32
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-42 Score=285.06 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=205.1
Q ss_pred CCCCCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHH
Q 024133 34 PLSTDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHR 112 (272)
Q Consensus 34 p~~~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~ 112 (272)
-..|+||+|||| |++++. +.+|+|||..+||||||++++.++..+-.+...+||++|||+|.|+.+|+.+|+..+++
T Consensus 11 iFspEGRLyQVEyAmeais--~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n 88 (249)
T KOG0178|consen 11 IFSPEGRLYQVEYAMEAIS--HAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKN 88 (249)
T ss_pred ccCCCcchHHHHHHHHHHh--hhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHH
Confidence 344799999999 999998 99999999999999999999999755556678999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccCC----cceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccCh
Q 024133 113 NLGIKCRLHELANKRRISVTGASKLLANILYSYRGM----GLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGS 187 (272)
Q Consensus 113 ~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~~----p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs 187 (272)
++|..+|.|.++|+++||++.|++.++++.|.|+.+ |++||+|.+|||+ .|.+||..||+|++-.|++.++|.++
T Consensus 89 ~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~ 168 (249)
T KOG0178|consen 89 YARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANS 168 (249)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccch
Confidence 999999999999999999999999999999988433 5669999999997 47999999999999999999999999
Q ss_pred hHHHHHHHccCCCCC-CHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC----eEEcCcchHHHHHHhhCCCC
Q 024133 188 PYAYGVLDSGYKFDM-SIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG----WKKLSGDDVGELHYHYYPVT 258 (272)
Q Consensus 188 ~~a~~~Le~~~~~~m-s~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg----~~~l~~~ei~~~~~~~~~~~ 258 (272)
..++.+|.+.|+.+. +.+||..++++.|..+.+.+..+...+++..+++++ ++.+.++||.+++.++....
T Consensus 169 ~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~~~~ 244 (249)
T KOG0178|consen 169 GAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYHETQ 244 (249)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhhhhh
Confidence 999999999999875 599999999999999999888899999999999874 56799999999999998654
No 33
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-41 Score=283.85 Aligned_cols=221 Identities=17% Similarity=0.214 Sum_probs=200.6
Q ss_pred CCCCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHH
Q 024133 35 LSTDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113 (272)
Q Consensus 35 ~~~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~ 113 (272)
..||||+||+| |.|||+ +|+|+||||||||||+++++.+++ +|..++...|||.|++||+|+++|+.+|.+.+..+
T Consensus 15 fSpdGrvfQveYA~KAve--n~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ 91 (254)
T KOG0184|consen 15 FSPDGRVFQVEYAQKAVE--NSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNR 91 (254)
T ss_pred eCCCCceehHHHHHHHHh--cCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHHHHH
Confidence 34799999999 999999 999999999999999999999996 88899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccCC----cceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhH
Q 024133 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGM----GLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPY 189 (272)
Q Consensus 114 l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~~----p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~ 189 (272)
+|.++..|+-.|+.++|...++..++++.|.++.+ |++++.++++||++||+||.++|+|..+.++++|+|.|.+.
T Consensus 92 ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~ 171 (254)
T KOG0184|consen 92 ARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQA 171 (254)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeeeccchhHH
Confidence 99999999999999999999999999999876321 45588999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcC--CCeEEcCcchHHHHHHhhCCCC
Q 024133 190 AYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGP--NGWKKLSGDDVGELHYHYYPVT 258 (272)
Q Consensus 190 a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~k--dg~~~l~~~ei~~~~~~~~~~~ 258 (272)
+++-||+.--.+|+.+|+++.+.+.|+.+.+......-.+++.|+.. +|..+.-|.|+.+..++|+...
T Consensus 172 aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a~~s 242 (254)
T KOG0184|consen 172 AKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYAKAS 242 (254)
T ss_pred HHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHHHhh
Confidence 99999999888999999999999999998765444555688888765 5777777779999998888654
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=8.3e-40 Score=277.95 Aligned_cols=181 Identities=36% Similarity=0.469 Sum_probs=167.9
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccc-cceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHh
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQS-VKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~-~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~ 132 (272)
+|+|+|||+++||||||+|+|.++|+.+..++ .+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++
T Consensus 3 ~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (190)
T PF00227_consen 3 NGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPE 82 (190)
T ss_dssp TSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHH
T ss_pred CCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccch
Confidence 99999999999999999999999888885555 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hccCCcceeEEEEEEEcCCC-CeeEEEeCCCceeec-CceEEccChhHHHHHHHccCCCCCCHHH
Q 024133 133 GASKLLANILY----SYRGMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKG-TRFSVGSGSPYAYGVLDSGYKFDMSIEE 206 (272)
Q Consensus 133 ~la~~ls~~l~----~~R~~p~~v~~iiaG~D~~g-p~Ly~iDp~G~~~~~-~~~AiG~gs~~a~~~Le~~~~~~ms~ee 206 (272)
.+++.+++.++ ..+..|+++++|++|||+++ |+||.+||+|++.++ +++|+|+|+.+++++|++.|+++||.+|
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~e 162 (190)
T PF00227_consen 83 YLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEE 162 (190)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHH
T ss_pred hhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHH
Confidence 66666655554 34556889999999999766 999999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 024133 207 AAELARRAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 207 ai~l~~~al~~a~~rd~~sg~~v~v~ii 234 (272)
|++++++||+.+.++|..++++++|++|
T Consensus 163 a~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 163 AIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999999999986
No 35
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.4e-39 Score=274.77 Aligned_cols=179 Identities=41% Similarity=0.540 Sum_probs=173.0
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|..+.+++.+|||+|+++++++++|..+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC--CcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHH
Q 024133 136 KLLANILYSYRG--MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELAR 212 (272)
Q Consensus 136 ~~ls~~l~~~R~--~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~ 212 (272)
+++++++|.+|. .|+++++|++|||+ .+|+||.+||+|++.+++++|+|+|+.+++++|++.|+++||.+||+++++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~ 160 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELAL 160 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 999999999987 78999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEE
Q 024133 213 RAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 213 ~al~~a~~rd~~sg~~v~v~ii 234 (272)
+||..+.++|..++.+++|.++
T Consensus 161 ~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 161 KALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999999999999875
No 36
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-39 Score=270.62 Aligned_cols=222 Identities=24% Similarity=0.262 Sum_probs=201.4
Q ss_pred CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHH
Q 024133 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (272)
Q Consensus 37 ~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (272)
|+||+||+| |++|+| +|+++||+|.++..||++-+|..+ -.++.++|||+||+|++++++|+++|.+.+.++++
T Consensus 15 PqGrl~QvEya~Eavk--qGsatVGLks~thaVLvAl~r~~s---eLss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr 89 (264)
T KOG0863|consen 15 PQGRLHQVEYAMEAVK--QGSATVGLKSRTHAVLVALKRAQS---ELSSHQKKIFKIDDHIGISIAGLTADARVLSRYLR 89 (264)
T ss_pred CcceehHHHHHHHHHh--cccceEeecccceEEEeeeccchh---HHHHhhheeEecccccceEEeccCcchHHHHHHHH
Confidence 689999999 999999 999999999999999999888765 33667899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCcCCHhHHHHHHHHHHHhc----cCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHH
Q 024133 116 IKCRLHELANKRRISVTGASKLLANILYSY----RGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAY 191 (272)
Q Consensus 116 ~~~~~~~~~~~~~i~v~~la~~ls~~l~~~----R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~ 191 (272)
.+|..+++.+++++++..|...|.+.+|.. -..||+|+++++|||+.||+||.+.|+|.++++++++||+.++.+.
T Consensus 90 ~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsAR 169 (264)
T KOG0863|consen 90 QECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSAR 169 (264)
T ss_pred HHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchhhHH
Confidence 999999999999999999999998888653 1125668999999999999999999999999999999999999999
Q ss_pred HHHHccCC--CCCCHHHHHHHHHHHHHHHHhhc-ccCCCcEEEEEEcCC-CeEEcCcchHHHHHHhhCCCCCchhH
Q 024133 192 GVLDSGYK--FDMSIEEAAELARRAIYHATFRD-AASGGVASVYYVGPN-GWKKLSGDDVGELHYHYYPVTPSTVE 263 (272)
Q Consensus 192 ~~Le~~~~--~~ms~eeai~l~~~al~~a~~rd-~~sg~~v~v~ii~kd-g~~~l~~~ei~~~~~~~~~~~~~~~~ 263 (272)
++||++.. ++++.||.++.+++||+.+...| ..++.+++|+|+.+| .|..++.+++.+++......+++..+
T Consensus 170 TyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~~~~~~~p~~~ 245 (264)
T KOG0863|consen 170 TYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDLFKKVDEPRED 245 (264)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHHhhcCCCcccc
Confidence 99999887 48999999999999999998855 678899999999998 69999999999999888776644333
No 37
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=264.71 Aligned_cols=218 Identities=20% Similarity=0.192 Sum_probs=202.1
Q ss_pred CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHH
Q 024133 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (272)
Q Consensus 37 ~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (272)
|+|||||+| |+||++ ..|-|.||+++||++|+++.++.+. +|+.++.+..+|+|+.+|+|+++|..+|.+..+.+++
T Consensus 18 peGrLyQVEYafkAin-~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar 95 (246)
T KOG0182|consen 18 PEGRLYQVEYAFKAIN-QAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRAR 95 (246)
T ss_pred CCceEEeeehHHHHhh-cCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHH
Confidence 699999999 999998 4488999999999999999999995 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHH
Q 024133 116 IKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYA 190 (272)
Q Consensus 116 ~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a 190 (272)
.++..+++.||.+||++.||++++++.|.|.. .|++|.+++.|+|+ .||.+|.+||.|.+..+++.|.|.....+
T Consensus 96 ~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~ 175 (246)
T KOG0182|consen 96 YEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEA 175 (246)
T ss_pred HHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhH
Confidence 99999999999999999999999999998732 15779999999996 58999999999999999999999999999
Q ss_pred HHHHHccCCCC--CCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC--eEEcCcchHHHHHHhhCCC
Q 024133 191 YGVLDSGYKFD--MSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG--WKKLSGDDVGELHYHYYPV 257 (272)
Q Consensus 191 ~~~Le~~~~~~--ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg--~~~l~~~ei~~~~~~~~~~ 257 (272)
..+||++|+++ +|.+|++++++.||..++.-|..+ ..++|.+++++. |+.|+.+||++.|..++..
T Consensus 176 tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~p~f~~Ls~~eie~hL~~IAEk 245 (246)
T KOG0182|consen 176 TSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKS-SELEVGVVTVDNPEFRILSAEEIEEHLQAIAEK 245 (246)
T ss_pred HHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCC-cceEEEEEEcCCcceeeccHHHHHHHHHHhhhc
Confidence 99999999987 779999999999999999888644 579999999874 9999999999999988753
No 38
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=262.06 Aligned_cols=198 Identities=32% Similarity=0.555 Sum_probs=183.9
Q ss_pred CCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHh
Q 024133 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (272)
Q Consensus 53 ~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~ 132 (272)
+.|||++|++|++||||++|+|.+.|.++.++-.+|+.+|.|+|+||.||.++|.|.+.+.++.....|...+++++++.
T Consensus 17 stGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~ 96 (224)
T KOG0174|consen 17 STGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVH 96 (224)
T ss_pred ccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEE-ccChhHHHHHHHccCCCCCCHHHHHHH
Q 024133 133 GASKLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEEAAEL 210 (272)
Q Consensus 133 ~la~~ls~~l~~~R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~Ai-G~gs~~a~~~Le~~~~~~ms~eeai~l 210 (272)
..|+.+++++|++|.. +.+++||+|||+ .|.++|.+---|+. ....+|| ||||.++++++|.+|+++||+||++++
T Consensus 97 ~aA~l~r~~~Y~~re~-L~AgliVAGwD~~~gGqVY~iplGG~l-~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~f 174 (224)
T KOG0174|consen 97 TAASLFREICYNYREM-LSAGLIVAGWDEKEGGQVYSIPLGGSL-TRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRF 174 (224)
T ss_pred HHHHHHHHHHHhCHHh-hhcceEEeecccccCceEEEeecCceE-eecceeeccCCceeeeeeehhhcCCCCCHHHHHHH
Confidence 9999999999999987 889999999997 57889998555555 4456666 999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEcCCCeE--EcCcchHHHHHH
Q 024133 211 ARRAIYHATFRDAASGGVASVYYVGPNGWK--KLSGDDVGELHY 252 (272)
Q Consensus 211 ~~~al~~a~~rd~~sg~~v~v~ii~kdg~~--~l~~~ei~~~~~ 252 (272)
.++++..|+.||..||+.|++.+|+++|+. .+.++++..+..
T Consensus 175 vk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v 218 (224)
T KOG0174|consen 175 VKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAV 218 (224)
T ss_pred HHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccccc
Confidence 999999999999999999999999999975 478888776543
No 39
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=257.37 Aligned_cols=188 Identities=27% Similarity=0.311 Sum_probs=180.8
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhH
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~ 133 (272)
+|+|+|||++.|++|+|+|+|.+.|..|.++...|||+++|+++++.+|..+|+..+...++...+.|+..+++.|++..
T Consensus 28 NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s 107 (235)
T KOG0179|consen 28 NGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHS 107 (235)
T ss_pred CCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcceeEEEEEEEcCCC-CeeEEEeCCCceeecCceEEccChhHHHHHHHccCC-----------CC
Q 024133 134 ASKLLANILYSYRGMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYK-----------FD 201 (272)
Q Consensus 134 la~~ls~~l~~~R~~p~~v~~iiaG~D~~g-p~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~-----------~~ 201 (272)
+|++|+.+||.+|.|||++..+|+|+|++| +.+|..||.|++....+.|-|+++.+++++||+..+ ..
T Consensus 108 ~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~ 187 (235)
T KOG0179|consen 108 AAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTP 187 (235)
T ss_pred HHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccc
Confidence 999999999999999999999999999866 889999999999999999999999999999998653 25
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEE
Q 024133 202 MSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKK 241 (272)
Q Consensus 202 ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~ 241 (272)
||+|+|++|++.++..|.+||..+|+.++|++++++|++.
T Consensus 188 Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 188 LSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred cCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 8999999999999999999999999999999999999864
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-37 Score=263.54 Aligned_cols=191 Identities=34% Similarity=0.488 Sum_probs=183.0
Q ss_pred HhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhC
Q 024133 47 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK 126 (272)
Q Consensus 47 ~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~ 126 (272)
-++.+ .|||++|+.+|||||+++|+|+|.|.++..++..||+.|.++|+||.+|.++|...+.+.+..+.++|++..+
T Consensus 31 p~~tk--TGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~ 108 (271)
T KOG0173|consen 31 PKATK--TGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTG 108 (271)
T ss_pred Ccccc--cCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccC
Confidence 34565 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCHhHHHHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHH
Q 024133 127 RRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 206 (272)
Q Consensus 127 ~~i~v~~la~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~ee 206 (272)
+.+.|-.+-+++.+.|+.|..+ .++.+|++|+|..||+||.+.|.|+.-..++.++|||+..++++||..|++||+.||
T Consensus 109 R~~rVv~A~~mlkQ~LFrYqG~-IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~ee 187 (271)
T KOG0173|consen 109 RKPRVVTALRMLKQHLFRYQGH-IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEE 187 (271)
T ss_pred CCCceeeHHHHHHHHHHHhcCc-ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHH
Confidence 9999999999999999999886 678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeE
Q 024133 207 AAELARRAIYHATFRDAASGGVASVYYVGPNGWK 240 (272)
Q Consensus 207 ai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~ 240 (272)
|.+|+.+|+...+..|..||++|++++|++.+..
T Consensus 188 a~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~ 221 (271)
T KOG0173|consen 188 AIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVE 221 (271)
T ss_pred HHHHHHHHHHhhhccccCCCCceeEEEEeCCCcc
Confidence 9999999999999999999999999999987754
No 41
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=249.45 Aligned_cols=189 Identities=25% Similarity=0.311 Sum_probs=180.7
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
-+++||++.|+|++|+|+....+.++..++.+|++.|+++++++++|..+|+..+.+++.+.+++|++++|.+++++.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHH
Q 024133 136 KLLANILYSY-R-GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELAR 212 (272)
Q Consensus 136 ~~ls~~l~~~-R-~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~ 212 (272)
+++++.+..+ | ..||.|++|+||+|+ .||.||++|..|+..+.++++.|.++.++.++||++|+||||.+||+++..
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmk 161 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMK 161 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHH
Confidence 9999999865 5 458999999999996 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEcCCCeEEcCc
Q 024133 213 RAIYHATFRDAASGGVASVYYVGPNGWKKLSG 244 (272)
Q Consensus 213 ~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~ 244 (272)
+|+.++.+|-...-.++.|.+|+|||+++++.
T Consensus 162 KCv~El~kRlvin~~~f~v~IVdkdGir~~~~ 193 (200)
T KOG0177|consen 162 KCVLELKKRLVINLPGFIVKIVDKDGIRKLDD 193 (200)
T ss_pred HHHHHHHHhcccCCCCcEEEEEcCCCceeccc
Confidence 99999999999999999999999999998764
No 42
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=6.1e-34 Score=238.70 Aligned_cols=166 Identities=22% Similarity=0.243 Sum_probs=146.6
Q ss_pred CceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEe-cCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhH
Q 024133 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (272)
Q Consensus 55 Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~ 133 (272)
|||+|||+++||||||+|+|++.|.++.+++.+||++| +++++|++||..+|+|.|.+.++.+++.|+... ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHH
Confidence 79999999999999999999999999999999999999 999999999999999999999999999998322 466
Q ss_pred HHHHHHHHHHhccC-CcceeEEEEEEEcCCCCeeEEEeCCCceeec--CceEEccChhHHHHHHHccCC-CCCCHHHHHH
Q 024133 134 ASKLLANILYSYRG-MGLSVGTMIAGWDETGPGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVLDSGYK-FDMSIEEAAE 209 (272)
Q Consensus 134 la~~ls~~l~~~R~-~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~--~~~AiG~gs~~a~~~Le~~~~-~~ms~eeai~ 209 (272)
+++.+..+. .++. .|+.+++|++ |. |+||++||.|++.+. +++|+|||+.+++++||++|+ ++| ||++
T Consensus 76 ~a~l~~~l~-~~~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~ 147 (172)
T PRK05456 76 AVELAKDWR-TDRYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEE 147 (172)
T ss_pred HHHHHHHHH-hccCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHH
Confidence 666554442 2222 2466888884 43 799999999999877 799999999999999999999 999 9999
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEE
Q 024133 210 LARRAIYHATFRDAASGGVASVYY 233 (272)
Q Consensus 210 l~~~al~~a~~rd~~sg~~v~v~i 233 (272)
++++|+..+.+||..|+++++|-.
T Consensus 148 la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 148 IAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999999998854
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=1.1e-33 Score=235.86 Aligned_cols=165 Identities=21% Similarity=0.200 Sum_probs=146.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecC-cEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINP-YMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~l 134 (272)
||+|||+++||||||+|+|++.|.++.+++.+||++|++ +++|++||..+|++.+.++++.+++.|+++.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999998 999999999999999999999999999988774 44
Q ss_pred HHHHHHHH-HhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecC--ceEEccChhHHHHHHHccCCCC-CCHHHHHHH
Q 024133 135 SKLLANIL-YSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT--RFSVGSGSPYAYGVLDSGYKFD-MSIEEAAEL 210 (272)
Q Consensus 135 a~~ls~~l-~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~--~~AiG~gs~~a~~~Le~~~~~~-ms~eeai~l 210 (272)
++.+++++ +.++++ +.+.+++++| ++||.+||.|++.+.+ +.++|||+.+++++||.+|+++ || +.++
T Consensus 76 a~l~~~l~~~~~~~~-l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~l 147 (171)
T cd01913 76 VELAKDWRTDRYLRR-LEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEI 147 (171)
T ss_pred HHHHHHHHhccCcCc-eEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHH
Confidence 55555553 455554 4566666644 4999999999999995 8899999999999999999995 99 5599
Q ss_pred HHHHHHHHHhhcccCCCcEEEEE
Q 024133 211 ARRAIYHATFRDAASGGVASVYY 233 (272)
Q Consensus 211 ~~~al~~a~~rd~~sg~~v~v~i 233 (272)
++++++.|.+||..||++|+|-.
T Consensus 148 a~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 148 ARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHhhCcccCCCEEEEe
Confidence 99999999999999999998754
No 44
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-33 Score=226.75 Aligned_cols=188 Identities=27% Similarity=0.291 Sum_probs=178.8
Q ss_pred CCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHh
Q 024133 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (272)
Q Consensus 53 ~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~ 132 (272)
.+|+++||+++|+||.||+|.|...-....+.+.+|||+|.|+++++.+|++.|+|.+.++++....+|+++.++.|.++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 48999999999999999999999876777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcceeEEEEEEEcCC-CCeeEEEeCCCceeecCce-EEccChhHHHHHHHccCCCCCCHHHHHHH
Q 024133 133 GASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAEL 210 (272)
Q Consensus 133 ~la~~ls~~l~~~R~~p~~v~~iiaG~D~~-gp~Ly~iDp~G~~~~~~~~-AiG~gs~~a~~~Le~~~~~~ms~eeai~l 210 (272)
.+++++|+++|++|.-||.+..+|||+|++ .|++..+|..|.....+.| +.|.++...++++|..|+|||..|+..+.
T Consensus 86 ~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFet 165 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFET 165 (204)
T ss_pred HHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999999999974 5999999999999777666 56999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEcCCCeE
Q 024133 211 ARRAIYHATFRDAASGGVASVYYVGPNGWK 240 (272)
Q Consensus 211 ~~~al~~a~~rd~~sg~~v~v~ii~kdg~~ 240 (272)
+.++|..+.+||+.||+...|++|+||.+.
T Consensus 166 isQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 166 ISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred HHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 999999999999999999999999999764
No 45
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=239.74 Aligned_cols=200 Identities=27% Similarity=0.338 Sum_probs=187.3
Q ss_pred CCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHH-HhhCCcCCH
Q 024133 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE-LANKRRISV 131 (272)
Q Consensus 53 ~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~-~~~~~~i~v 131 (272)
.+||++||+||++|||||+|+..++|++...+++++|++|+|++++++||..+|+|.+.+.|.....+.. +..++.+.|
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~P 118 (256)
T KOG0185|consen 39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGP 118 (256)
T ss_pred eccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccCh
Confidence 4999999999999999999999999999999999999999999999999999999999999988876633 556689999
Q ss_pred hHHHHHHHHHHHhccCC--cceeEEEEEEEcCCC-CeeEEEeCCCceeecCceEEccChhHHHHHHHccCC---CCCCHH
Q 024133 132 TGASKLLANILYSYRGM--GLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYK---FDMSIE 205 (272)
Q Consensus 132 ~~la~~ls~~l~~~R~~--p~~v~~iiaG~D~~g-p~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~---~~ms~e 205 (272)
+.++++|+++||.+|.. |++..++|+|+|++| |+|-++|-.|..++.+..|+|.|.+.+.++|++.|+ ++++.+
T Consensus 119 k~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~e 198 (256)
T KOG0185|consen 119 KAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSRE 198 (256)
T ss_pred HHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHH
Confidence 99999999999999874 999999999999855 999999999999999999999999999999999998 579999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHH
Q 024133 206 EAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHY 252 (272)
Q Consensus 206 eai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~ 252 (272)
||.+++.+|++...+||+.+...++|.+|+++|+..-.+..|+.-|.
T Consensus 199 eA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~ 245 (256)
T KOG0185|consen 199 EAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWD 245 (256)
T ss_pred HHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecch
Confidence 99999999999999999999999999999999999888888876664
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=6.2e-33 Score=231.35 Aligned_cols=165 Identities=21% Similarity=0.206 Sum_probs=145.4
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEe-cCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~l 134 (272)
||+|||+++||||||+|+|++.|.++.+++.+||++| +++++|++||..+|++.+.++++.++++|++.. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999998743 4677
Q ss_pred HHHHHHH-HHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeec--CceEEccChhHHHHHHHccC-CCCCCHHHHHHH
Q 024133 135 SKLLANI-LYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVLDSGY-KFDMSIEEAAEL 210 (272)
Q Consensus 135 a~~ls~~-l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~--~~~AiG~gs~~a~~~Le~~~-~~~ms~eeai~l 210 (272)
++.+++. .+.++++ +.+.+|++|| ++||.+||.|.+.+. ++.++|||+.+++++||.+| +++|+ |+++
T Consensus 76 a~l~~~~~~~~~~~~-l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~l 147 (171)
T TIGR03692 76 VELAKDWRTDRYLRR-LEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEI 147 (171)
T ss_pred HHHHHHHhhcccccc-cEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHH
Confidence 7777774 2344433 5566666644 499999999999997 58899999999999999999 47777 9999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEE
Q 024133 211 ARRAIYHATFRDAASGGVASVYY 233 (272)
Q Consensus 211 ~~~al~~a~~rd~~sg~~v~v~i 233 (272)
+.+++..|++||..||++|+|-.
T Consensus 148 a~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 148 AREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999998864
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=1.7e-28 Score=200.87 Aligned_cols=161 Identities=37% Similarity=0.417 Sum_probs=153.7
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
+|+||+++++|||+|+|++.+.+........+||++++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-CcceeEEEEEEEcCCCCeeEEEeCCCceeec-CceEEccChhHHHHHHHccCCCCCCHHHHHHHHHH
Q 024133 136 KLLANILYSYRG-MGLSVGTMIAGWDETGPGLYYVDSEGGRLKG-TRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARR 213 (272)
Q Consensus 136 ~~ls~~l~~~R~-~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~-~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~ 213 (272)
+.+++.++.+|. .|+.+++|++|+|+++|+||++||+|.+.++ .++++|+++..+.++|++.|+++|+.+|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALK 160 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999865 5677999999999888999999999999999 88999999999999999999999999999999999
Q ss_pred HHH
Q 024133 214 AIY 216 (272)
Q Consensus 214 al~ 216 (272)
||.
T Consensus 161 ~l~ 163 (164)
T cd01901 161 ALK 163 (164)
T ss_pred HHh
Confidence 985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.1e-15 Score=120.35 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=134.2
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEec-CcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHh
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEIN-PYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~-~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~ 132 (272)
++||||+++-++-|+||+|.+.|.|+.+...+..||.+|. ..++.+++|.++|+..+.+.+..+++.|.-..-+ ..-
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aav 80 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AAV 80 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HHH
Confidence 8999999999999999999999999999999999988885 4899999999999999999999999988522222 233
Q ss_pred HHHHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecC--ceEEccChhHHHHHHHccCCC-CCCHHHHHH
Q 024133 133 GASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT--RFSVGSGSPYAYGVLDSGYKF-DMSIEEAAE 209 (272)
Q Consensus 133 ~la~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~--~~AiG~gs~~a~~~Le~~~~~-~ms~eeai~ 209 (272)
.+++..+.--+-+| +.+-++++ | .-.+|-+...|..++.. ..|||||..++++.....++. ++| |.+
T Consensus 81 elaKdwr~Dk~lr~---LEAmllVa--d--~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~e 150 (178)
T COG5405 81 ELAKDWRTDKYLRK---LEAMLLVA--D--KTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---ARE 150 (178)
T ss_pred HHHHhhhhhhHHHH---HhhheeEe--C--CCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHH
Confidence 34443333223223 33445554 4 35778888999988775 468999999999998888864 666 667
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEEc
Q 024133 210 LARRAIYHATFRDAASGGVASVYYVG 235 (272)
Q Consensus 210 l~~~al~~a~~rd~~sg~~v~v~ii~ 235 (272)
++.++|..+.+-+.++++++.|..+.
T Consensus 151 Ia~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 151 IAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHhhhheEEEecCCcEEEEEee
Confidence 88889999999899999999887664
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.1e-12 Score=106.57 Aligned_cols=183 Identities=18% Similarity=0.231 Sum_probs=138.4
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEe----cCcEEEEecCChhhHHHHHHHHHHHHHHHHHhh-CCcCC
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI----NPYMLGTMAGGAADCQFWHRNLGIKCRLHELAN-KRRIS 130 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I----~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~-~~~i~ 130 (272)
|.|||++...|.|+++|+|.+.|. -.....+|.|.. +.-++++.+|..+-.|.+++.+.+..+.-.-.. -.-.+
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGv-D~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGV-DYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCc-hHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 679999999999999999999862 122345565544 334567789999999999998877665211111 11223
Q ss_pred HhHHHHHHHHHHH----hccC------CcceeEEEEEEEcCCC-CeeEEEeCCCceeec----CceEEccChhHHHHHHH
Q 024133 131 VTGASKLLANILY----SYRG------MGLSVGTMIAGWDETG-PGLYYVDSEGGRLKG----TRFSVGSGSPYAYGVLD 195 (272)
Q Consensus 131 v~~la~~ls~~l~----~~R~------~p~~v~~iiaG~D~~g-p~Ly~iDp~G~~~~~----~~~AiG~gs~~a~~~Le 195 (272)
+-.++..+..... .-++ .-++|++|++|.-..+ |.||.+.|.|++++. .++-||. +.+-+++|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhh
Confidence 4444444443332 2232 2478999999987544 899999999999876 4668898 568999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeE
Q 024133 196 SGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWK 240 (272)
Q Consensus 196 ~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~ 240 (272)
+.+..+++++|+.+.++-++.+..+.+.+.|-++++.++.+|.++
T Consensus 160 R~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~ 204 (255)
T COG3484 160 RTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFS 204 (255)
T ss_pred hhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEecccee
Confidence 999999999999999999999999999999999999999999653
No 50
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=97.06 E-value=0.00048 Score=38.17 Aligned_cols=19 Identities=21% Similarity=0.079 Sum_probs=14.7
Q ss_pred CCCCCC-CCcchhhHh-HHhh
Q 024133 31 FSLPLS-TDFDEFQKD-TKAT 49 (272)
Q Consensus 31 ~~~p~~-~~g~~~q~e-a~~a 49 (272)
.+++.| |+||+||+| |++|
T Consensus 3 ~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 3 RSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp SSTTSBBTTSSBHHHHHHHHH
T ss_pred CCceeECCCCeEEeeEeeecC
Confidence 344445 799999999 9886
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.84 E-value=0.088 Score=44.67 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=90.1
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
+.+||..+++|.|+|.|+|. +++-|.-.....|-+.| ..|+=-+=+.|.
T Consensus 2 SLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEeeL---------YsG~IktdeEL~ 50 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEEL---------YSGKIKTDEELL 50 (194)
T ss_pred eEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHHH---------hCCccCCHHHHH
Confidence 56899999999999999984 24667666665555433 234333445555
Q ss_pred HHHHHHHHh-----ccCCcceeE-EEEE------EEcCCCCeeEEE-------eCCCceeecCceEEccCh---------
Q 024133 136 KLLANILYS-----YRGMGLSVG-TMIA------GWDETGPGLYYV-------DSEGGRLKGTRFSVGSGS--------- 187 (272)
Q Consensus 136 ~~ls~~l~~-----~R~~p~~v~-~iia------G~D~~gp~Ly~i-------Dp~G~~~~~~~~AiG~gs--------- 187 (272)
+....+=-. -|..-...+ +++| |.|...-++|-+ |-.|.-.... ..|.++
T Consensus 51 kkA~Elgv~i~I~D~r~KV~~~~~vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~--~~g~~sgiIVfGNk~ 128 (194)
T PF09894_consen 51 KKAEELGVKIKITDDREKVRKIGDVLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNK--SRGEGSGIIVFGNKF 128 (194)
T ss_pred HHHHHcCCEEEEecCchheEEeCCEEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEE--ecCCceeEEEECCHH
Confidence 554432110 011100111 2333 223222345532 3333332221 223332
Q ss_pred --hHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC
Q 024133 188 --PYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN 237 (272)
Q Consensus 188 --~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd 237 (272)
+.+...|.++|++.|+++++..+...+|..+...-+..+..+++.+.++.
T Consensus 129 ~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 129 TKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 56777899999999999999999999999998777777778998887664
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.53 E-value=0.41 Score=42.12 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=101.7
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
|.+|+..+++|.|+|.|+|.- ++-|.-.|...+.+.| ..|+--+-+.|+
T Consensus 2 tLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEekL---------YsGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEEKL---------YSGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHHHh---------hcCccccHHHHH
Confidence 578999999999999999742 3556666766555443 355555666677
Q ss_pred HHHHHHHHhc-----cCC--cceeEEEEEEEcCCCC------eeEE-------EeCCCceeec----CceE-EccCh---
Q 024133 136 KLLANILYSY-----RGM--GLSVGTMIAGWDETGP------GLYY-------VDSEGGRLKG----TRFS-VGSGS--- 187 (272)
Q Consensus 136 ~~ls~~l~~~-----R~~--p~~v~~iiaG~D~~gp------~Ly~-------iDp~G~~~~~----~~~A-iG~gs--- 187 (272)
++...+--.. |.. -.+-+.+++-+...+| ++|- ++-.|+-.-. ..++ |=.|.
T Consensus 51 r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~ 130 (293)
T COG4079 51 RKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFT 130 (293)
T ss_pred HHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHH
Confidence 7665432111 110 0111223333322221 2332 1233332111 1122 12233
Q ss_pred -hHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC--CeEEcCcchHHHHHH
Q 024133 188 -PYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN--GWKKLSGDDVGELHY 252 (272)
Q Consensus 188 -~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd--g~~~l~~~ei~~~~~ 252 (272)
+.+..+|.++|.+.++++++.++...+|..+...-...+..++++.++++ .+.++-.+||+.+..
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~k 198 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLRK 198 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999988766777778999988874 566777788877653
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=64.22 E-value=7.2 Score=31.27 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=56.2
Q ss_pred EEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcch
Q 024133 167 YYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDD 246 (272)
Q Consensus 167 y~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~e 246 (272)
..+|-+|.....++-..|.||..+-+-+-..|-..+|++|+.++--.-+.. + .+-.+|.+. +..+-++-
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIAK--e---L~LPPVKLH------CSMLAEDA 139 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIAK--E---LSLPPVKLH------CSMLAEDA 139 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcccHHHHH--h---ccCCchhhh------hHHHHHHH
Confidence 678889999999999999999999999999999999999998764332211 1 222233221 33466667
Q ss_pred HHHHHHhhCCC
Q 024133 247 VGELHYHYYPV 257 (272)
Q Consensus 247 i~~~~~~~~~~ 257 (272)
|...+..|...
T Consensus 140 IKaAikdyk~K 150 (157)
T KOG3361|consen 140 IKAAIKDYKEK 150 (157)
T ss_pred HHHHHHHHHHh
Confidence 77766666544
No 54
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=49.83 E-value=73 Score=23.45 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC--eEEcCcchHHHHHHhhCCCC
Q 024133 198 YKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG--WKKLSGDDVGELHYHYYPVT 258 (272)
Q Consensus 198 ~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg--~~~l~~~ei~~~~~~~~~~~ 258 (272)
..+.+|.++..+..++.... ..+.++.+.+++.+| +..-+.+|+++.++-|+--+
T Consensus 16 ~d~~~s~e~L~~~v~~~c~~------~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~ 72 (83)
T cd06404 16 IDPSISLEELCNEVRDMCRF------HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNK 72 (83)
T ss_pred cCCCcCHHHHHHHHHHHhCC------CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcC
Confidence 34567777777776655322 344689999999976 89999999999987776443
No 55
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=38.98 E-value=70 Score=28.67 Aligned_cols=59 Identities=24% Similarity=0.476 Sum_probs=42.7
Q ss_pred EEEEEEcCCCCeeEEEeCCCceeecCce-------EEccChhHHHHHHHccCCCCCCHHHHHHHHHHH
Q 024133 154 TMIAGWDETGPGLYYVDSEGGRLKGTRF-------SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRA 214 (272)
Q Consensus 154 ~iiaG~D~~gp~Ly~iDp~G~~~~~~~~-------AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~a 214 (272)
.+|+-|-..|. -.+++.|.+++..++ .+|-|..+.-+++=..++..+++.||++.+-++
T Consensus 223 v~I~~w~~eGA--~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~eAvdfg~rv 288 (308)
T KOG2947|consen 223 VLICPWASEGA--GALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSLAEAVDFGNRV 288 (308)
T ss_pred EEEeccccccc--cccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 46676765443 356788888887655 358877776666666666689999999999876
No 56
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=35.99 E-value=1e+02 Score=25.02 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC
Q 024133 199 KFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG 238 (272)
Q Consensus 199 ~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg 238 (272)
.+.+|+++|.+++..++..+.. .+.++.+.+++..|
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~----~g~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQ----LGVPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHH----hCCceEEEEECCCC
Confidence 3579999999999999988765 27899999999988
No 57
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=35.23 E-value=1.4e+02 Score=29.53 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=27.2
Q ss_pred cCCHhHHHHHHHHHHHhccCCcceeEEEEE-EEcCCCCeeEEEeCCCce
Q 024133 128 RISVTGASKLLANILYSYRGMGLSVGTMIA-GWDETGPGLYYVDSEGGR 175 (272)
Q Consensus 128 ~i~v~~la~~ls~~l~~~R~~p~~v~~iia-G~D~~gp~Ly~iDp~G~~ 175 (272)
.|+-..+++.|+...+..+ | ..+.+| +||++ |+-|.+-|.+..
T Consensus 312 NmSNd~AVrvLREaV~~~g--P--i~ltvAk~~DP~-~q~~fTipr~ep 355 (626)
T KOG3571|consen 312 NMSNDQAVRVLREAVSRPG--P--IKLTVAKCWDPN-PQSYFTIPRGEP 355 (626)
T ss_pred hcCchHHHHHHHHHhccCC--C--eEEEEeeccCCC-CcccccCCCCCc
Confidence 4555667777777776544 4 334555 79975 666777677644
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=31.69 E-value=21 Score=22.98 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=24.0
Q ss_pred EEccChhHHHHHHHccC-CCCCCHHHHHHHHHH
Q 024133 182 SVGSGSPYAYGVLDSGY-KFDMSIEEAAELARR 213 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~-~~~ms~eeai~l~~~ 213 (272)
+.|+....+..++.+.. .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 35888888888888877 789999998877764
No 59
>PRK09732 hypothetical protein; Provisional
Probab=31.45 E-value=1.3e+02 Score=24.09 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCe
Q 024133 200 FDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGW 239 (272)
Q Consensus 200 ~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~ 239 (272)
+.||++.|.+++..++..+.+. +.++.|.+++..|.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~ 40 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGH 40 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCC
Confidence 4699999999999999998763 46899999999883
No 60
>PF07277 SapC: SapC; InterPro: IPR010836 This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance [].
Probab=30.45 E-value=1.4e+02 Score=25.86 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=48.7
Q ss_pred CCCeeEEEeCCCcee-ec---Cce-EEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEE---
Q 024133 162 TGPGLYYVDSEGGRL-KG---TRF-SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYY--- 233 (272)
Q Consensus 162 ~gp~Ly~iDp~G~~~-~~---~~~-AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~i--- 233 (272)
++....++|..-..+ +. ..| .-|.-+.+...+++-. -..++........++...+.+......++|..
T Consensus 97 ~~~~~v~iD~~s~~v~~~~G~~LFd~~G~~T~~l~~~~~~L----~~~~~~~~~T~~f~~~L~~~~Ll~~~~l~v~~~~g 172 (221)
T PF07277_consen 97 EDQLVVCIDEDSPLVSEDEGEPLFDEDGEPTEYLQQVLNFL----QQYQQGRQQTQAFIKALAELGLLEPWTLTVTLDDG 172 (221)
T ss_pred CCceEEEEECCCCCcCCCCCccCcCCCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCcccEEEEEeCCC
Confidence 345556666542222 22 233 5588888887776653 23455566666666666666776666555543
Q ss_pred ----------EcCCCeEEcCcchHHHHHH
Q 024133 234 ----------VGPNGWKKLSGDDVGELHY 252 (272)
Q Consensus 234 ----------i~kdg~~~l~~~ei~~~~~ 252 (272)
|+.+..+.++.+.+.++++
T Consensus 173 ~~~~l~G~~~Vde~kL~~L~de~l~~L~~ 201 (221)
T PF07277_consen 173 EKHNLNGFYTVDEEKLNALSDEALLELHK 201 (221)
T ss_pred CeeeccCceEECHHHHhcCCHHHHHHHHH
Confidence 3333344555555555543
No 61
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=29.53 E-value=81 Score=24.77 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCe
Q 024133 201 DMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGW 239 (272)
Q Consensus 201 ~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~ 239 (272)
.+|.++|.+++..++..+.++. .++.|.+++..|.
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGH 36 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-
T ss_pred CcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCC
Confidence 4789999999999999988643 4588888998884
No 62
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=27.69 E-value=58 Score=24.94 Aligned_cols=17 Identities=53% Similarity=0.921 Sum_probs=14.0
Q ss_pred CCCeeEEEeCCCceeec
Q 024133 162 TGPGLYYVDSEGGRLKG 178 (272)
Q Consensus 162 ~gp~Ly~iDp~G~~~~~ 178 (272)
++|+||++||.+....+
T Consensus 36 d~PrL~Yvdp~~~~~KG 52 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLKG 52 (104)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred cCCEEEEEECCCCeECc
Confidence 47999999999877553
No 63
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.10 E-value=1.5e+02 Score=30.42 Aligned_cols=116 Identities=17% Similarity=0.088 Sum_probs=66.6
Q ss_pred EecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeec
Q 024133 99 TMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178 (272)
Q Consensus 99 ~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~ 178 (272)
.-+|-++-|-.+++.+ .....|+.+....|.++.+.++|......|-|-.+++.+=-+||-||+.|-.|--.-.
T Consensus 191 ~eAGRAaAc~sLcRIf------cSKksgEeIl~a~LS~FY~ll~Q~Lq~kdyvchpmLasl~ln~p~LFccdLkGId~ll 264 (1215)
T KOG3652|consen 191 VEAGRAAACASLCRIF------CSKKSGEEILNAQLSNFYALLFQCLQEKDYVCHPMLASLFLNGPNLFCCDLKGIDSLL 264 (1215)
T ss_pred hhhhHHHHHHHHHHhh------hcccCcccccHHHHHHHHHHHHHHHhhcccccchhheeeeecCCceeeecCCchhHhh
Confidence 3456666555555433 2345788999999999988888765433344444555554578999999988865443
Q ss_pred CceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q 024133 179 TRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATF 220 (272)
Q Consensus 179 ~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~ 220 (272)
.+|-.----..+..-+-+.++.-.+.-|.....+++|...+-
T Consensus 265 P~Fi~ALd~il~dre~~rkfkS~~n~tElRRa~in~LlSli~ 306 (1215)
T KOG3652|consen 265 PHFIFALDIILIDREKLRKFKSISNETELRRACINALLSLIC 306 (1215)
T ss_pred HHHHHHHHhhhccHHHhhhccccCCHHHHHHHHHHHHHHhcc
Confidence 333211111111111222233223466777777777766553
No 64
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=24.55 E-value=1.1e+02 Score=24.84 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=26.1
Q ss_pred CCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCc
Q 024133 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPY 95 (272)
Q Consensus 53 ~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~ 95 (272)
..|-||+=|++|||..|+..--.+- --+.-+|+..+++.
T Consensus 7 ~~gktcllir~kdgafl~~~fistv----gid~rnkli~~~~~ 45 (192)
T KOG0083|consen 7 CTGKTCLLIRFKDGAFLAGNFISTV----GIDFRNKLIDMDDK 45 (192)
T ss_pred ccCceEEEEEeccCceecCceeeee----eeccccceeccCCc
Confidence 3788999999999999885432222 22345677666653
No 65
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.95 E-value=1.4e+02 Score=25.40 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccCC--------ccee-EEEEEEEcCCCCeeEEEeCCCc
Q 024133 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGM--------GLSV-GTMIAGWDETGPGLYYVDSEGG 174 (272)
Q Consensus 110 l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~~--------p~~v-~~iiaG~D~~gp~Ly~iDp~G~ 174 (272)
+-.-+-..++.|.-.- ..++-..|+.....++.. ||- ++++ +.+|.|+|+ +.+|+.||.|.
T Consensus 100 ~p~al~~fakkY~~~a-~d~tGksl~~ik~ql~kg-~PV~iw~T~~~~~s~H~v~itgyDk--~n~yynDpyG~ 169 (195)
T COG4990 100 WPTALVSFAKKYNGNA-VDLTGKSLSDIKGQLLKG-RPVVIWVTNFHSYSIHSVLITGYDK--YNIYYNDPYGY 169 (195)
T ss_pred chHHHHHHHHHhCCcc-ccCcCCcHHHHHHHHhcC-CcEEEEEecccccceeeeEeecccc--cceEecccccc
Confidence 3344555556664333 567777777765555443 321 3332 456779985 89999999964
No 66
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=21.23 E-value=1.8e+02 Score=24.11 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=37.6
Q ss_pred CCeeEEEeCCCceeecCceEEc-cChhHHHHHHHccCC--------------------CCCCHHHHHHHHHHHHHHHHh
Q 024133 163 GPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYK--------------------FDMSIEEAAELARRAIYHATF 220 (272)
Q Consensus 163 gp~Ly~iDp~G~~~~~~~~AiG-~gs~~a~~~Le~~~~--------------------~~ms~eeai~l~~~al~~a~~ 220 (272)
+-.+.++.|.|..........| ..+..+..+|++.++ .++|++.|.+.+++.|.....
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~ 149 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGIS 149 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhcc
Confidence 4567888899988666555667 555555555554332 157778888888777766444
Done!