Query 024133
Match_columns 272
No_of_seqs 202 out of 1230
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 18:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 1.3E-53 4.5E-58 376.0 24.9 222 31-256 5-241 (243)
2 1iru_B 20S proteasome; cell cy 100.0 3.3E-53 1.1E-57 371.2 25.1 223 28-254 4-232 (233)
3 1iru_C 20S proteasome; cell cy 100.0 2.8E-53 9.7E-58 377.7 25.0 231 28-260 4-246 (261)
4 1yar_A Proteasome alpha subuni 100.0 1.9E-52 6.6E-57 366.3 24.2 220 28-251 7-233 (233)
5 1ryp_C 20S proteasome; multica 100.0 5.5E-52 1.9E-56 365.8 27.0 226 29-256 5-243 (244)
6 3h4p_A Proteasome subunit alph 100.0 6.4E-53 2.2E-57 375.9 20.3 229 28-261 11-247 (264)
7 1ryp_D 20S proteasome; multica 100.0 1.7E-51 5.7E-56 362.2 28.8 220 31-255 4-235 (241)
8 1iru_A 20S proteasome; cell cy 100.0 8.1E-52 2.8E-56 365.2 26.3 225 28-256 8-244 (246)
9 1ryp_E 20S proteasome; multica 100.0 2.5E-52 8.7E-57 367.5 22.9 216 36-255 8-236 (242)
10 1iru_E 20S proteasome; cell cy 100.0 7.8E-52 2.7E-56 364.3 25.2 222 28-253 7-240 (241)
11 1iru_D 20S proteasome; cell cy 100.0 3.9E-52 1.3E-56 367.8 23.0 227 29-261 3-239 (248)
12 1iru_G 20S proteasome; cell cy 100.0 3.9E-52 1.3E-56 369.0 22.9 225 28-255 6-240 (254)
13 1j2p_A Alpha-ring, proteasome 100.0 6.6E-51 2.3E-55 359.4 28.0 223 28-255 7-237 (246)
14 1ryp_G 20S proteasome; multica 100.0 4.1E-51 1.4E-55 360.4 26.1 226 28-256 3-240 (244)
15 3nzj_K Proteasome component PR 100.0 3.4E-51 1.2E-55 368.3 24.9 226 28-255 41-276 (287)
16 1iru_F 20S proteasome; cell cy 100.0 4.9E-51 1.7E-55 363.7 23.6 224 28-256 5-238 (263)
17 1ryp_F 20S proteasome; multica 100.0 2.4E-51 8.4E-56 359.4 19.4 216 30-251 6-233 (233)
18 1ryp_B 20S proteasome; multica 100.0 4.3E-50 1.5E-54 355.0 26.9 222 28-253 4-249 (250)
19 1iru_L 20S proteasome; cell cy 100.0 8.4E-50 2.9E-54 342.7 26.7 204 56-259 1-204 (204)
20 3nzj_F Proteasome component C1 100.0 2.4E-50 8.2E-55 363.0 23.6 226 28-256 7-244 (288)
21 3h4p_a Proteasome subunit beta 100.0 4.9E-50 1.7E-54 348.2 23.3 209 55-263 1-211 (219)
22 1yar_H Proteasome beta subunit 100.0 4.3E-49 1.5E-53 341.7 25.2 205 49-256 4-209 (217)
23 1j2q_H Proteasome beta subunit 100.0 5.3E-49 1.8E-53 337.3 25.1 201 56-256 1-202 (202)
24 1ryp_L 20S proteasome; multica 100.0 8.1E-48 2.8E-52 332.4 25.1 200 56-255 1-201 (212)
25 1q5q_A Proteasome alpha-type s 100.0 2.1E-47 7.2E-52 339.5 20.1 211 37-258 9-239 (259)
26 1iru_N 20S proteasome; cell cy 100.0 1.2E-47 4E-52 333.0 17.4 203 47-251 2-209 (219)
27 1q5r_H Proteasome beta-type su 100.0 1.8E-46 6.1E-51 338.7 23.9 211 46-258 58-286 (294)
28 1iru_H 20S proteasome; cell cy 100.0 1.4E-46 4.7E-51 323.0 21.4 197 56-253 1-200 (205)
29 1ryp_N 20S proteasome; multica 100.0 4.4E-47 1.5E-51 332.4 18.5 208 47-256 2-223 (233)
30 3unf_H Proteasome subunit beta 100.0 3.9E-46 1.3E-50 326.7 23.5 203 56-259 1-209 (234)
31 1ryp_H 20S proteasome; multica 100.0 5.8E-46 2E-50 319.2 23.5 193 47-243 3-196 (205)
32 3nzj_H Proteasome component PU 100.0 1.3E-45 4.4E-50 328.1 24.0 200 46-248 22-222 (261)
33 1iru_M 20S proteasome; cell cy 100.0 3.2E-45 1.1E-49 316.2 25.3 189 54-242 8-206 (213)
34 1ryp_M 20S proteasome; multica 100.0 3.7E-45 1.3E-49 318.0 24.3 189 54-242 8-215 (222)
35 1ryp_K 20S proteasome; multica 100.0 3.2E-45 1.1E-49 312.8 23.1 191 55-245 1-195 (198)
36 1g0u_M Proteasome component PR 100.0 3.3E-46 1.1E-50 333.0 17.7 209 46-256 34-256 (266)
37 1q5q_H Proteasome beta-type su 100.0 4.4E-45 1.5E-49 320.2 23.5 200 56-255 1-218 (235)
38 1iru_J 20S proteasome; cell cy 100.0 8.3E-45 2.8E-49 311.9 24.2 189 53-241 6-197 (205)
39 3unf_N Proteasome subunit beta 100.0 2.9E-45 1E-49 313.2 20.4 193 56-251 1-197 (199)
40 3mi0_A Proteasome subunit alph 100.0 1.1E-44 3.8E-49 319.8 23.4 211 34-255 4-238 (248)
41 1ryp_J 20S proteasome; multica 100.0 2.9E-44 9.8E-49 308.3 25.1 187 54-241 7-196 (204)
42 1ryp_I 20S proteasome; multica 100.0 1.5E-44 5.2E-49 314.2 23.5 194 56-250 1-195 (222)
43 2jay_A Proteasome; hydrolase; 100.0 5E-45 1.7E-49 328.9 20.8 212 44-258 48-278 (291)
44 1iru_K 20S proteasome; cell cy 100.0 2.6E-44 9E-49 307.9 22.8 190 55-244 1-193 (201)
45 1iru_I 20S proteasome; cell cy 100.0 4.8E-44 1.6E-48 313.5 24.1 194 56-250 1-194 (234)
46 1g3k_A ATP-dependent protease 100.0 2.3E-36 7.7E-41 253.3 19.1 168 56-235 1-173 (174)
47 2z3b_A ATP-dependent protease 100.0 6.4E-36 2.2E-40 251.9 18.7 170 53-235 3-180 (180)
48 1m4y_A ATP-dependent protease 100.0 1.4E-35 4.9E-40 247.6 18.7 166 56-234 1-171 (171)
49 1vd2_A Protein kinase C, IOTA 38.3 33 0.0011 24.5 3.7 54 199-258 23-78 (89)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.3e-53 Score=376.01 Aligned_cols=222 Identities=16% Similarity=0.106 Sum_probs=209.7
Q ss_pred CCCCCC-CCcchhhHh-HHhhccCCC-CceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhH
Q 024133 31 FSLPLS-TDFDEFQKD-TKATLKHAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADC 107 (272)
Q Consensus 31 ~~~p~~-~~g~~~q~e-a~~av~~~~-Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~ 107 (272)
+.++.| ||||+||+| |++||+ + |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||+|++||..+|+
T Consensus 5 ~~~t~fsp~Grl~QvEYA~~av~--~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 81 (243)
T 1ryp_A 5 RHITIFSPEGRLYQVEYAFKATN--QTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDA 81 (243)
T ss_dssp GTSSSCCTTSCCHHHHHHHHHTT--TTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHH
T ss_pred CCCceECCCCeeHHHHHHHHHHh--cCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHH
Confidence 344444 799999999 999998 9 9999999999999999999999 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHh--cc--CCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceE
Q 024133 108 QFWHRNLGIKCRLHELANKRRISVTGASKLLANILYS--YR--GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFS 182 (272)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~--~R--~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~A 182 (272)
+.|.++++.+++.|++.++++++++.+++++++++|. .| ..|+++++||+|||+ +||+||++||+|++.++++.|
T Consensus 82 ~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a 161 (243)
T 1ryp_A 82 RNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATA 161 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999954 34 357889999999996 789999999999999999999
Q ss_pred EccChhHHHHHHHccCCC-------CCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhhC
Q 024133 183 VGSGSPYAYGVLDSGYKF-------DMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYY 255 (272)
Q Consensus 183 iG~gs~~a~~~Le~~~~~-------~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~~ 255 (272)
+|+|+.+++++||+.|++ +||++||++++++||..+.+|| .++++++|++|+++|+++++++||++++..++
T Consensus 162 ~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~~~ei~~~~~~~~ 240 (243)
T 1ryp_A 162 TGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSAENIEERLVAIA 240 (243)
T ss_dssp ESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCHHHHHHHHHHHT
T ss_pred ECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECCHHHHHHHHHHhh
Confidence 999999999999999999 9999999999999999999999 78999999999999999999999999999886
Q ss_pred C
Q 024133 256 P 256 (272)
Q Consensus 256 ~ 256 (272)
.
T Consensus 241 ~ 241 (243)
T 1ryp_A 241 E 241 (243)
T ss_dssp T
T ss_pred c
Confidence 4
No 2
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3.3e-53 Score=371.19 Aligned_cols=223 Identities=18% Similarity=0.224 Sum_probs=210.6
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.++.| ||||+||+| |+++++ +|||+|||+++||||||+|+|.+ +.++.+++.+||++|+++|++++||..+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 80 (233)
T 1iru_B 4 GYSFSLTTFSPSGKLVQIEYALAAVA--GGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGP 80 (233)
T ss_dssp CCCSBSCCCCTTSCCHHHHHHHHHHH--TSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHH
T ss_pred CccCCceeECCCCeEehhHhHHHHHH--cCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccH
Confidence 344555555 799999999 999999 99999999999999999999999 6899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
|++.+.++++.+++.|+++++++++++.+++++++++|.|+. .|+++++||+|||++||+||++||+|++.++++.
T Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~ 160 (233)
T 1iru_B 81 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKAT 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999987633 4788999999999889999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhh
Q 024133 182 SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 254 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~ 254 (272)
|+|+|+.+++++||+.|+++||++||++++++||..+.+|| .++++++|++|+++|++.++++||++++..+
T Consensus 161 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 161 AMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232 (233)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999 7799999999999999999999999999765
No 3
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=2.8e-53 Score=377.71 Aligned_cols=231 Identities=19% Similarity=0.208 Sum_probs=216.7
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEYA~~av~--~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~a 81 (261)
T 1iru_C 4 RYDSRTTIFSPEGRLYQVEYAMEAIG--HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITS 81 (261)
T ss_dssp TTCCCTTCCCTTSCCHHHHHHHHHHT--TSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHH
T ss_pred ccCCCCccCCCCCeehHHHhHHHHHh--cCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHH
Confidence 355566655 799999999 999998 9999999999999999999999999888888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcC-CCCeeEEEeCCCceeecCc
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTR 180 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~ 180 (272)
|++.|.++++.+++.|++.++++++++.+++++++++|.+|. .|+++++||+|||+ +||+||++||+|++.++++
T Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (261)
T 1iru_C 82 DANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKA 161 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeee
Confidence 999999999999999999999999999999999999998853 37889999999995 7899999999999999999
Q ss_pred eEEccChhHHHHHHHccCCC-CCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC----eEEcCcchHHHHHHhhC
Q 024133 181 FSVGSGSPYAYGVLDSGYKF-DMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG----WKKLSGDDVGELHYHYY 255 (272)
Q Consensus 181 ~AiG~gs~~a~~~Le~~~~~-~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg----~~~l~~~ei~~~~~~~~ 255 (272)
.|+|+|+.+++++||+.|++ +||++||++++++||..+.++|..++++++|++|+++| |++++++||++++.++.
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~ 241 (261)
T 1iru_C 162 TCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHE 241 (261)
T ss_dssp EEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999987 89999999999999996
Q ss_pred CCCCc
Q 024133 256 PVTPS 260 (272)
Q Consensus 256 ~~~~~ 260 (272)
..+.+
T Consensus 242 ~~~~~ 246 (261)
T 1iru_C 242 EEEAK 246 (261)
T ss_dssp TTTTT
T ss_pred hchhh
Confidence 55443
No 4
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.9e-52 Score=366.33 Aligned_cols=220 Identities=21% Similarity=0.311 Sum_probs=203.8
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.+++ ++.+++.+||++|+++|++++||..+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~a 83 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQVEYAREAVK--KGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVA 83 (233)
T ss_dssp ------CCCCTTSCCHHHHHHHHHHT--TSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHH
T ss_pred cCCCCCceECcCCeeHHHHhHHHHHh--cCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHH
Confidence 344555555 799999999 999998 9999999999999999999999985 78889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
|++.+.++++.+++.|++.++++++++.+++++++++|.++. .|+++++||+|||++||+||.+||+|++.++++.
T Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~ 163 (233)
T 1yar_A 84 DARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKAT 163 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeEE
Confidence 999999999999999999999999999999999999997754 2788999999999889999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC-eEEcCcchHHHHH
Q 024133 182 SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG-WKKLSGDDVGELH 251 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg-~~~l~~~ei~~~~ 251 (272)
|+|+|+.+++++||+.|+++||++||++++++||..+.+||. ++++++|++|+++| +++++++||++++
T Consensus 164 aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~~~l 233 (233)
T 1yar_A 164 AIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVKKFL 233 (233)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred EEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 999999999999999999999999999999999999999997 79999999999998 9999999998763
No 5
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5.5e-52 Score=365.78 Aligned_cols=226 Identities=19% Similarity=0.216 Sum_probs=211.0
Q ss_pred CCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhh
Q 024133 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (272)
Q Consensus 29 ~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD 106 (272)
+.+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.++|.++.+++.+||++|+++|+|++||..+|
T Consensus 5 yd~~~t~fsp~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 5 YDSRTTIFSPEGRLYQVEYALESIS--HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GCCCTTCBCTTSCBHHHHHHHHHHT--TSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred cCCCCceECcCCeeHHHHhHHHHHh--cCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 34455555 799999999 999998 99999999999999999999999987776899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEc-CCCCeeEEEeCCCceeecCce
Q 024133 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D-~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
++.|.++++.+++.|++.++++++++.+++++++++|.++ ..|+++++||+||| ++||+||++||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 9999999999999999999999999999999999998762 23788999999999 678999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEc--CCC----eEEcCcchHHHHHHhhC
Q 024133 182 SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVG--PNG----WKKLSGDDVGELHYHYY 255 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~--kdg----~~~l~~~ei~~~~~~~~ 255 (272)
|+|+|+.+++++||+.|+++||++||++++++||..+.+||..++++++|++|+ ++| ++.++++||++++.+++
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~ 242 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTG 242 (244)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHHT
T ss_pred EECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999966689999999999 886 89999999999999886
Q ss_pred C
Q 024133 256 P 256 (272)
Q Consensus 256 ~ 256 (272)
.
T Consensus 243 ~ 243 (244)
T 1ryp_C 243 I 243 (244)
T ss_dssp C
T ss_pred c
Confidence 4
No 6
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.4e-53 Score=375.90 Aligned_cols=229 Identities=21% Similarity=0.333 Sum_probs=210.9
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.++.| |+||+||+| |++||+ +|||+|||+++||||||+|+|.+++ ++.+++.+||++|++||+|++||..+
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA~~av~--~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~a 87 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYAREAVR--RGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVA 87 (264)
T ss_dssp -----CCCCCSSSSCHHHHHHHHHHH--HSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSH
T ss_pred ccCCCcceECCCCeeHHHHhHHHHHh--cCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchH
Confidence 345666666 799999999 999998 9999999999999999999999985 78889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
|++.+.++++.+++.|++.++++++++.+++++++++|.++. .|+++++||||||++||+||++||+|++.+++++
T Consensus 88 D~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~ 167 (264)
T 3h4p_A 88 DARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKAT 167 (264)
T ss_dssp HHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEE
T ss_pred HHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeE
Confidence 999999999999999999999999999999999999987743 3788999999999989999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC--CeEEcCcchHHHHHHhhCCCCC
Q 024133 182 SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN--GWKKLSGDDVGELHYHYYPVTP 259 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd--g~~~l~~~ei~~~~~~~~~~~~ 259 (272)
|+|+|+.+++++||+.|+++||++||++++++||..+.++ .++++++|++|+++ +|++++++||++++..+....+
T Consensus 168 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~~~~ 245 (264)
T 3h4p_A 168 AIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKKLN 245 (264)
T ss_dssp EESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTTSSS
T ss_pred EECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999986 79999999999975 6999999999999999987654
Q ss_pred ch
Q 024133 260 ST 261 (272)
Q Consensus 260 ~~ 261 (272)
++
T Consensus 246 ~~ 247 (264)
T 3h4p_A 246 EE 247 (264)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 7
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.7e-51 Score=362.17 Aligned_cols=220 Identities=19% Similarity=0.280 Sum_probs=207.5
Q ss_pred CCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHH
Q 024133 31 FSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQ 108 (272)
Q Consensus 31 ~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~ 108 (272)
+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.+.|.++.+++.+||++|++||++++||..+|++
T Consensus 4 ~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 81 (241)
T 1ryp_D 4 RALSIFSPDGHIFQVEYALEAVK--RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSR 81 (241)
T ss_dssp CCCSCCBTTTBCHHHHHHHHHHT--TSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHH
T ss_pred CCceeECCCCcchHHHHHHHHHH--cCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHH
Confidence 445555 799999999 999998 9999999999999999999999998888777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcC--CCCeeEEEeCCCceeecCceE
Q 024133 109 FWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGTRFS 182 (272)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~--~gp~Ly~iDp~G~~~~~~~~A 182 (272)
.|.++++.+++.|++.++++++++.+++++++++|.++. .|+++++||+|||+ +||+||++||+|++.++++.|
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~a 161 (241)
T 1ryp_D 82 ILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQT 161 (241)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEE
Confidence 999999999999999999999999999999999998743 27889999999998 789999999999999999999
Q ss_pred EccChhHHHHHHHccC---CCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC-eEEcCcchHHHHHHhhC
Q 024133 183 VGSGSPYAYGVLDSGY---KFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG-WKKLSGDDVGELHYHYY 255 (272)
Q Consensus 183 iG~gs~~a~~~Le~~~---~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg-~~~l~~~ei~~~~~~~~ 255 (272)
+|+|+.+++++||+.| +++||++||++++++||..+.+ .++++++|++|+++| ++.++++|+++++.+++
T Consensus 162 iG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~ 235 (241)
T 1ryp_D 162 IGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEINQYVTQIE 235 (241)
T ss_dssp ESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred ECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHh
Confidence 9999999999999999 9999999999999999999985 788999999999985 99999999999999885
No 8
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=8.1e-52 Score=365.20 Aligned_cols=225 Identities=17% Similarity=0.162 Sum_probs=210.6
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCC-CceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCCh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~-Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~ 104 (272)
.+...++.| |+||+||+| |++||+ + |||+|||+++||||||+|+|.+ +.++.+++.+||++|+++|++++||..
T Consensus 8 ~yd~~~t~fsp~Grl~QvEya~~av~--~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~ 84 (246)
T 1iru_A 8 GFDRHITIFSPEGRLYQVEYAFKAIN--QGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMT 84 (246)
T ss_dssp TTTTTSSCCCTTSCCHHHHHHHHHHH--TTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECH
T ss_pred CcCCCCccCCCCCeehHHHHHHHHHh--cCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccH
Confidence 345555555 799999999 999998 7 9999999999999999999999 689999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcC-CCCeeEEEeCCCceeecC
Q 024133 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGT 179 (272)
Q Consensus 105 aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~ 179 (272)
+|++.|.++++.+++.|++.++++++++.+++++++++|.|+ ..|+++++||+|||+ +||+||++||+|++.+++
T Consensus 85 aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 164 (246)
T 1iru_A 85 ADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFK 164 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEee
Confidence 999999999999999999999999999999999999976542 347889999999996 789999999999999999
Q ss_pred ceEEccChhHHHHHHHccCCC--CCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC--eEEcCcchHHHHHHhhC
Q 024133 180 RFSVGSGSPYAYGVLDSGYKF--DMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG--WKKLSGDDVGELHYHYY 255 (272)
Q Consensus 180 ~~AiG~gs~~a~~~Le~~~~~--~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg--~~~l~~~ei~~~~~~~~ 255 (272)
+.|+|+|+.+++++||+.|++ +||++||++++++||..+.+|| .++++++|++|+++| ++.++++|+++++.+++
T Consensus 165 ~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~ 243 (246)
T 1iru_A 165 ATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 243 (246)
T ss_dssp EEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhh
Confidence 999999999999999999999 9999999999999999999999 889999999999998 69999999999998885
Q ss_pred C
Q 024133 256 P 256 (272)
Q Consensus 256 ~ 256 (272)
+
T Consensus 244 ~ 244 (246)
T 1iru_A 244 E 244 (246)
T ss_dssp T
T ss_pred c
Confidence 3
No 9
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.5e-52 Score=367.52 Aligned_cols=216 Identities=22% Similarity=0.281 Sum_probs=205.1
Q ss_pred CCCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHH
Q 024133 36 STDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114 (272)
Q Consensus 36 ~~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l 114 (272)
.||||+||+| |++|++ +|||+|||+++||||||+|+|.++|.++ +++.+||++|+++|+|++||..+|++.+.+++
T Consensus 8 sp~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 84 (242)
T 1ryp_E 8 SPEGRLFQVEYSLEAIK--LGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84 (242)
T ss_dssp CTTSCBHHHHHHHHHHT--TSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHH
T ss_pred CCCCcChHHHhHHHHHH--cCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHH
Confidence 3799999999 999998 9999999999999999999999998766 88999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----------CCcceeEEEEEEEc-CCCCeeEEEeCCCceeecCceEE
Q 024133 115 GIKCRLHELANKRRISVTGASKLLANILYSYR----------GMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSV 183 (272)
Q Consensus 115 ~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----------~~p~~v~~iiaG~D-~~gp~Ly~iDp~G~~~~~~~~Ai 183 (272)
+.+++.|++.++++++++.+++++++++|.++ ..|+++++||+||| ++||+||++||+|++.+++++|+
T Consensus 85 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 164 (242)
T 1ryp_E 85 RTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAI 164 (242)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEE
Confidence 99999999999999999999999999998853 22778999999999 67899999999999999999999
Q ss_pred ccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC-eEEcCcchHHHHHHhhC
Q 024133 184 GSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG-WKKLSGDDVGELHYHYY 255 (272)
Q Consensus 184 G~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg-~~~l~~~ei~~~~~~~~ 255 (272)
|+|+.+++++||+.|+++||++||++++++||..+.+| ..++++++|++|+++| +++++++|+++++.+++
T Consensus 165 Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~ 236 (242)
T 1ryp_E 165 GSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKTAELIKELK 236 (242)
T ss_dssp STTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998 6789999999999998 69999999999999884
No 10
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=7.8e-52 Score=364.29 Aligned_cols=222 Identities=19% Similarity=0.260 Sum_probs=207.9
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.+..| ||||+||+| |++|++ +|||+|||+++||||||+|+|.+.|.++ +++.+||++|+++|++++||..+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~a 83 (241)
T 1iru_E 7 EYDRGVNTFSPEGRLFQVEYDIEAIK--LGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIA 83 (241)
T ss_dssp -CCCCTTCBCTTSCBHHHHHHHHHHT--TSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHH
T ss_pred CCCCCCceECCCCccHHHHHHHHHHH--cCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChH
Confidence 345555555 799999999 999998 9999999999999999999999998777 89999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc---------CCcceeEEEEEEEcCCCCeeEEEeCCCcee
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR---------GMGLSVGTMIAGWDETGPGLYYVDSEGGRL 176 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R---------~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~ 176 (272)
|++.+.++++.+++.|++.++++++++.+++++++++|.++ ..|+++++||+|||++||+||.+||+|++.
T Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~ 163 (241)
T 1iru_E 84 DAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFV 163 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcEE
Confidence 99999999999999999999999999999999999997663 237889999999998889999999999999
Q ss_pred ecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC-eEEcCcchHHHHHHh
Q 024133 177 KGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG-WKKLSGDDVGELHYH 253 (272)
Q Consensus 177 ~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg-~~~l~~~ei~~~~~~ 253 (272)
+++++|+|+|+.+++++||+.|+++||++||++++++||..+.+| ..++++++|++|+++| ++.++++|+++++.+
T Consensus 164 ~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~ 240 (241)
T 1iru_E 164 QCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEELEEVIKD 240 (241)
T ss_dssp EBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHHHHHHTT
T ss_pred ecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 7789999999999997 799999999999865
No 11
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.9e-52 Score=367.79 Aligned_cols=227 Identities=17% Similarity=0.268 Sum_probs=211.0
Q ss_pred CCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhh
Q 024133 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (272)
Q Consensus 29 ~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD 106 (272)
+.+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.+.| ++.+++.+||++|++||+|++||..+|
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD 79 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVK--KGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTAD 79 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHH--TSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHH--cCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHH
Confidence 44555555 799999999 999999 9999999999999999999999996 678889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEc-CCCCeeEEEeCCCceeecCce
Q 024133 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D-~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
++.|.++++.+++.|++.++++++++.+++++++++|.++. .|+++++||+||| ++||+||++||+|++.++++.
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 159 (248)
T 1iru_D 80 ARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKAN 159 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEE
Confidence 99999999999999999999999999999999999988743 2788999999999 678999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCCC--CHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC-eEEcCcchHHHHHHhhCCCC
Q 024133 182 SVGSGSPYAYGVLDSGYKFDM--SIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG-WKKLSGDDVGELHYHYYPVT 258 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~m--s~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg-~~~l~~~ei~~~~~~~~~~~ 258 (272)
|+|+|+.+++++||+.|+++| |++||++++++||..+.+ .++++++|++|+++| +++++++||++++..+....
T Consensus 160 aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~ 236 (248)
T 1iru_D 160 AIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK 236 (248)
T ss_dssp EESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTT
T ss_pred EECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcc
Confidence 999999999999999999999 999999999999999876 578999999999998 99999999999999997665
Q ss_pred Cch
Q 024133 259 PST 261 (272)
Q Consensus 259 ~~~ 261 (272)
.++
T Consensus 237 ~~~ 239 (248)
T 1iru_D 237 EEN 239 (248)
T ss_dssp TTT
T ss_pred hhh
Confidence 443
No 12
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=3.9e-52 Score=369.00 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=210.8
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.++.| |+||+||+| |++||+ +|+|+|||+++||||||+|+|.+.|.++ .++.+||++|++||+|++||..+
T Consensus 6 ~yd~~~t~fsp~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~a 82 (254)
T 1iru_G 6 GYDLSASTFSPDGRVFQVEYAMKAVE--NSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLA 82 (254)
T ss_dssp STTSCTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHH
T ss_pred ccCCCCccCCcCCccHHHHhHHHHHh--cCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChH
Confidence 355566666 799999999 999999 9999999999999999999999998777 47899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEc-CCCCeeEEEeCCCceeecCc
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTR 180 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D-~~gp~Ly~iDp~G~~~~~~~ 180 (272)
|++.|.++++.+++.|+++++++++++.+++++++++|.+| ..|+++++|||||| ++||+||++||+|++.++++
T Consensus 83 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 162 (254)
T 1iru_G 83 DARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWG 162 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeee
Confidence 99999999999999999999999999999999999999885 24789999999999 67899999999999999999
Q ss_pred eEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC--C-eEEcCcchHHHHHHhhC
Q 024133 181 FSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN--G-WKKLSGDDVGELHYHYY 255 (272)
Q Consensus 181 ~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd--g-~~~l~~~ei~~~~~~~~ 255 (272)
.|+|+|+.+++++||+.|+++||++||++++++||..+.++|..++++++|++|+++ | ++.+++++++++++.++
T Consensus 163 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 163 CAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp EEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888778889999999987 6 99999999999998874
No 13
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=6.6e-51 Score=359.44 Aligned_cols=223 Identities=22% Similarity=0.295 Sum_probs=208.9
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.+.+ ++.+++.+||++|+++|++++||..+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~a 83 (246)
T 1j2p_A 7 GYDRAITVFSPDGRLFQVEYAREAVK--RGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVA 83 (246)
T ss_dssp TSSSCTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHH
T ss_pred CcCCCCceECCCCeehHHHhHHHHHH--cCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccH
Confidence 455566555 799999999 999998 9999999999999999999999985 56688999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
|++.+.++++.+++.|++.++++++++.+++++++++|.|+. .|+++++||+||| +||+||.+||+|++.+++++
T Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~ 162 (246)
T 1j2p_A 84 DARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKAT 162 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEE
Confidence 999999999999999999999999999999999999987643 2788999999999 89999999999999999999
Q ss_pred EEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEc-C-CCeEEcCcchHHHHHHhhC
Q 024133 182 SVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVG-P-NGWKKLSGDDVGELHYHYY 255 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~-k-dg~~~l~~~ei~~~~~~~~ 255 (272)
|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++++++|++|+ + +|++.++++|+++++.++.
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~ 237 (246)
T 1j2p_A 163 AIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEELKPYVERAN 237 (246)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 7889999999999 6 4899999999999999884
No 14
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=4.1e-51 Score=360.42 Aligned_cols=226 Identities=18% Similarity=0.179 Sum_probs=210.9
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.++++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.++|.++.+ +.+||++|+++|+|++||..+
T Consensus 3 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~a 79 (244)
T 1ryp_G 3 GYDLSNSVFSPDGRNFQVEYAVKAVE--NGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIP 79 (244)
T ss_dssp CTTSSTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHH
T ss_pred CccCCcccCCcCCchHHHHhHHHHHH--CCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHH
Confidence 345666666 799999999 999999 999999999999999999999999877655 459999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
|++.|.++++.+++.|+++++++++++.+++++++++|.++ ..|+++++||+|||++||+||++||+|++.++++.
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ 159 (244)
T 1ryp_G 80 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGA 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999998762 24788999999999889999999999999999999
Q ss_pred EEccChhHHHHHHHcc---CCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcC---CCeEEcCcchHHHHHHhhC
Q 024133 182 SVGSGSPYAYGVLDSG---YKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGP---NGWKKLSGDDVGELHYHYY 255 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~---~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~k---dg~~~l~~~ei~~~~~~~~ 255 (272)
|+|+|+.+++++||+. |+++||++||++++++||..+.+||..++++++|++|++ +|++++.++++.+.+++++
T Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~~ 239 (244)
T 1ryp_G 160 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFA 239 (244)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHHH
Confidence 9999999999999997 999999999999999999999999999999999999998 8999999999999988885
Q ss_pred C
Q 024133 256 P 256 (272)
Q Consensus 256 ~ 256 (272)
+
T Consensus 240 ~ 240 (244)
T 1ryp_G 240 Q 240 (244)
T ss_dssp H
T ss_pred H
Confidence 3
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=3.4e-51 Score=368.31 Aligned_cols=226 Identities=55% Similarity=0.960 Sum_probs=196.6
Q ss_pred CCCCCCCCCCCcchhhHh---------HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEE
Q 024133 28 APSFSLPLSTDFDEFQKD---------TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLG 98 (272)
Q Consensus 28 ~~~~~~p~~~~g~~~q~e---------a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~ 98 (272)
.+.|.+|++.++..|..+ +..+|+ +|||+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++
T Consensus 41 ~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~v~--~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~ 118 (287)
T 3nzj_K 41 APSLTVPPIASPQQFLRAHTDDSRNPDCKIKIA--HGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLG 118 (287)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEE
T ss_pred CcccccCCCCCHHHHHHHhcccccccchhhhec--cCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEE
Confidence 678999999888888765 255676 999999999999999999999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccCCcceeEEEEEEEc-CCCCeeEEEeCCCceee
Q 024133 99 TMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLK 177 (272)
Q Consensus 99 ~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~~p~~v~~iiaG~D-~~gp~Ly~iDp~G~~~~ 177 (272)
++||..+|++.|.++++.+++.|+++++++++++.+++++++++|.+|.+|+++++|||||| ++||+||++||+|++.+
T Consensus 119 ~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~ 198 (287)
T 3nzj_K 119 TMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLK 198 (287)
T ss_dssp ECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEE
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 57899999999999999
Q ss_pred cCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhhC
Q 024133 178 GTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYY 255 (272)
Q Consensus 178 ~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~~ 255 (272)
++++|+|+|+.+++++||+.|+++||++||++++++||..+.+||..++++++|++|+++||++++++||++++.+++
T Consensus 199 ~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~~ 276 (287)
T 3nzj_K 199 GDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVK 276 (287)
T ss_dssp CSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHH
T ss_pred cCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998886
No 16
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=4.9e-51 Score=363.65 Aligned_cols=224 Identities=18% Similarity=0.205 Sum_probs=209.2
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.++|. .++.+||++|+++|+|++||..+
T Consensus 5 ~yd~~~t~fsP~Grl~QvEYA~~av~--~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~a 79 (263)
T 1iru_F 5 QYDNDVTVWSPQGRIHQIEYAMEAVK--QGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTA 79 (263)
T ss_dssp TTTSCTTCCCTTSCCHHHHHHHHHHH--HSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHH
T ss_pred CCCCCCccCCCCCeehHHHHHHHHHH--cCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHH
Confidence 455666666 799999999 999998 99999999999999999999999874 24789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
|++.|.++++.+++.|++.++++++++.+++++++++|.++ ..||++++||+|||++||+||++||+|++.++++.
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 80 DARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999998652 13788999999999989999999999999999999
Q ss_pred EEccChhHHHHHHHccCCC--CCCHHHHHHHHHHHHHHHHhhc-ccCCCcEEEEEEcCC-CeEEcCcchHHHHHHhhCC
Q 024133 182 SVGSGSPYAYGVLDSGYKF--DMSIEEAAELARRAIYHATFRD-AASGGVASVYYVGPN-GWKKLSGDDVGELHYHYYP 256 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~~~~--~ms~eeai~l~~~al~~a~~rd-~~sg~~v~v~ii~kd-g~~~l~~~ei~~~~~~~~~ 256 (272)
|+|+|+.+++++||+.|++ +||++||++++++||..+.+|| ..++++++|++|+++ |+++++++||++++.++..
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~~ 238 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEE 238 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCCC
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhc
Confidence 9999999999999999998 9999999999999999999999 488999999999999 8999999999999999973
No 17
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=2.4e-51 Score=359.41 Aligned_cols=216 Identities=22% Similarity=0.241 Sum_probs=200.4
Q ss_pred CCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhH
Q 024133 30 SFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADC 107 (272)
Q Consensus 30 ~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~ 107 (272)
.+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.+.|.. ++.+||++|++||++++||..+|+
T Consensus 6 d~~~t~fsp~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 6 DGDTVTFSPTGRLFQVEYALEAIK--QGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp SSCTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHH
T ss_pred cCCCccCCCCCeehHHHHHHHHHH--cCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHH
Confidence 3445555 799999999 999999 999999999999999999999998632 478999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhc----cCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEE
Q 024133 108 QFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSY----RGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV 183 (272)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~----R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~Ai 183 (272)
+.|.++++.+++.|++.++++++++.+++++++++|.+ +..|+++++||||||++||+||++||+|++.++++.|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai 160 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAI 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEE
Confidence 99999999999999999999999999999999999764 22378899999999998999999999999999999999
Q ss_pred ccChhHHHHHHHccCCC--CC--CHHHHHHHHHHHHHHHHhhc-ccCCCcEEEEEEcCC-CeEEcCcchHHHHH
Q 024133 184 GSGSPYAYGVLDSGYKF--DM--SIEEAAELARRAIYHATFRD-AASGGVASVYYVGPN-GWKKLSGDDVGELH 251 (272)
Q Consensus 184 G~gs~~a~~~Le~~~~~--~m--s~eeai~l~~~al~~a~~rd-~~sg~~v~v~ii~kd-g~~~l~~~ei~~~~ 251 (272)
|+|+.+++++||+.|++ +| |++||+++++++|..+. || ..++++++|++|+++ ||++++++||++++
T Consensus 161 G~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 161 GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233 (233)
T ss_dssp STTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred CCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 99999999999999998 99 99999999999999998 78 578999999999999 79999999998763
No 18
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=4.3e-50 Score=355.03 Aligned_cols=222 Identities=20% Similarity=0.245 Sum_probs=206.1
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.+.++.| ||||+||+| |++|++ +|||+|||+++||||||+|+|.+ +.++.+++.+||++|+++|+|++||..+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 80 (250)
T 1ryp_B 4 RYSFSLTTFSPSGKLGQIDYALTAVK--QGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGP 80 (250)
T ss_dssp CCCSBSSCBCTTSCBHHHHHHHHHHH--TSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHH
T ss_pred cccCCceeECCCCccHHHHhHHHHHH--cCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHH
Confidence 455666666 799999999 999998 99999999999999999999998 7899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHhhCCcCCHhHHHHHHHHHHHhcc----CCcceeEEEEEEEcC-CCCeeEEEeCCCceeecC
Q 024133 106 DCQFWHRNLGIKCRL-HELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGT 179 (272)
Q Consensus 106 D~~~l~~~l~~~~~~-~~~~~~~~i~v~~la~~ls~~l~~~R----~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~ 179 (272)
|++.+.++++.+++. |+..++++++++.+++.++++++.++ ..|+++++||+|||+ +||+||++||+|++.+++
T Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (250)
T 1ryp_B 81 DYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWK 160 (250)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeec
Confidence 999999999999999 99999999999999999999887652 247889999999997 589999999999999999
Q ss_pred ceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC----------------CeEEcC
Q 024133 180 RFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN----------------GWKKLS 243 (272)
Q Consensus 180 ~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd----------------g~~~l~ 243 (272)
+.|+|+|+.+++++||+.|+++||++||++++++||..+.+++ .++++++|++|+++ +|++++
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (250)
T 1ryp_B 161 ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLT 239 (250)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECC
T ss_pred eeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccccccccccccccCCCCCeEECC
Confidence 9999999999999999999999999999999999999999875 58999999999986 389999
Q ss_pred cchHHHHHHh
Q 024133 244 GDDVGELHYH 253 (272)
Q Consensus 244 ~~ei~~~~~~ 253 (272)
++||++++..
T Consensus 240 ~~ei~~~l~~ 249 (250)
T 1ryp_B 240 SQEINDRLEA 249 (250)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 19
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=8.4e-50 Score=342.75 Aligned_cols=204 Identities=66% Similarity=1.138 Sum_probs=197.5
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAI 215 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al 215 (272)
+++++++|.+|++|+++++||+|||++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++++||
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al 160 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAI 160 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhhCCCCC
Q 024133 216 YHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 259 (272)
Q Consensus 216 ~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~~~~~~ 259 (272)
..+.+||..++++++|++|+++|++.++++|+++++.+++++.|
T Consensus 161 ~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~~~~~ 204 (204)
T 1iru_L 161 YQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 204 (204)
T ss_dssp HHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHHHTC---
T ss_pred HHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999976543
No 20
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.4e-50 Score=362.97 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=205.8
Q ss_pred CCCCCCCCC-CCcchhhHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChh
Q 024133 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (272)
Q Consensus 28 ~~~~~~p~~-~~g~~~q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~a 105 (272)
.+.++++.| |+||+||+| |++||+ +|||+|||+++||||||+|+|.++|.++. ++++||++|++||+|++||+.+
T Consensus 7 ~yd~~~t~fSP~Grl~QvEYA~kAv~--~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~a 83 (288)
T 3nzj_F 7 GYDLSNSVFSPDGRNFQVEYAVKAVE--NGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIP 83 (288)
T ss_dssp CTTSSTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHH
T ss_pred CccCCcccCCCCCchHHHHHHHHHHh--cCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHH
Confidence 456677777 799999999 999999 99999999999999999999999987665 4789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcCCHhHHHHHHHHHHHhccC----CcceeEEEEEEEcCCCCeeEEEeCCCceeecCce
Q 024133 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (272)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~ls~~l~~~R~----~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~ 181 (272)
|++.|.++++.+++.|++.++++++++.+++++++++|.|+. .||+|++||||||++||+||++||+|++++++++
T Consensus 84 D~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~ 163 (288)
T 3nzj_F 84 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGA 163 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEE
Confidence 999999999999999999999999999999999999998743 4889999999999999999999999999999999
Q ss_pred EEccChhHHHHHHHcc---CCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcC---CCeEEcCcchHHHHHHhhC
Q 024133 182 SVGSGSPYAYGVLDSG---YKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGP---NGWKKLSGDDVGELHYHYY 255 (272)
Q Consensus 182 AiG~gs~~a~~~Le~~---~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~k---dg~~~l~~~ei~~~~~~~~ 255 (272)
|+|+|+.+++++||+. |+++||++||++++++||..+.+++..++..++|.+|++ +|.+++.++|+.+-.++++
T Consensus 164 aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~~~~ 243 (288)
T 3nzj_F 164 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFA 243 (288)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHHHHHH
T ss_pred EEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999988899999999998 3566555555555444554
Q ss_pred C
Q 024133 256 P 256 (272)
Q Consensus 256 ~ 256 (272)
+
T Consensus 244 ~ 244 (288)
T 3nzj_F 244 Q 244 (288)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.9e-50 Score=348.22 Aligned_cols=209 Identities=33% Similarity=0.465 Sum_probs=196.4
Q ss_pred CceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHH
Q 024133 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (272)
Q Consensus 55 Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~l 134 (272)
|||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.|.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecC-ceEEccChhHHHHHHHccCCCCCCHHHHHHHHH
Q 024133 135 SKLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGT-RFSVGSGSPYAYGVLDSGYKFDMSIEEAAELAR 212 (272)
Q Consensus 135 a~~ls~~l~~~R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~-~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~ 212 (272)
++++++++|.+|..||++++||||||+ +||+||++||+|++++++ +.|+|+|+.+++++||+.|+++||++||+++++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999999998889999999999998 789999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhhCCCCCchhH
Q 024133 213 RAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVE 263 (272)
Q Consensus 213 ~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~~~~~~~~~~ 263 (272)
+||..+.+||..++++++|++|+++||++++++||++++.+++.....+.+
T Consensus 161 ~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~~~~~~~~~ 211 (219)
T 3h4p_a 161 NALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPKKKTT 211 (219)
T ss_dssp HHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC--------
T ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999999999999999999999977654443
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=4.3e-49 Score=341.74 Aligned_cols=205 Identities=32% Similarity=0.518 Sum_probs=195.5
Q ss_pred hccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCc
Q 024133 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (272)
Q Consensus 49 av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~ 128 (272)
+++ +|||+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|++.++++
T Consensus 4 ~~~--~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 4 TLE--TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCC--CCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 454 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHH
Q 024133 129 ISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAA 208 (272)
Q Consensus 129 i~v~~la~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai 208 (272)
++++.+++++++++|.+|..||++++||+||| +||+||++||+|++.++++.|+|+|+.+++++||+.|+++||.|||+
T Consensus 82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 160 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGV 160 (217)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHH
Confidence 99999999999999998877899999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEEcC-CCeEEcCcchHHHHHHhhCC
Q 024133 209 ELARRAIYHATFRDAASGGVASVYYVGP-NGWKKLSGDDVGELHYHYYP 256 (272)
Q Consensus 209 ~l~~~al~~a~~rd~~sg~~v~v~ii~k-dg~~~l~~~ei~~~~~~~~~ 256 (272)
+++++||..+.+||..++++++|++|++ +|+++++++|+++++.+++.
T Consensus 161 ~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~~ 209 (217)
T 1yar_H 161 DLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGL 209 (217)
T ss_dssp HHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 89999999999999988864
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=5.3e-49 Score=337.32 Aligned_cols=201 Identities=36% Similarity=0.558 Sum_probs=195.9
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecC-ceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT-RFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRA 214 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~-~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~a 214 (272)
+++++++|.+|..||++++||+|||++||+||++||+|++.+++ +.|+|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~a 160 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRA 160 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHH
Confidence 99999999988778999999999998899999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhhCC
Q 024133 215 IYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYP 256 (272)
Q Consensus 215 l~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~~~ 256 (272)
|..+.+||..++++++|++|+++|+++++++|+++++.++++
T Consensus 161 l~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~~ 202 (202)
T 1j2q_H 161 IYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK 202 (202)
T ss_dssp HHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGGTTC
T ss_pred HHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999998864
No 24
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=8.1e-48 Score=332.37 Aligned_cols=200 Identities=58% Similarity=1.017 Sum_probs=195.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEc-CCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRA 214 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D-~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~a 214 (272)
+++++++|.+|.+|+++++||+||| ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~a 160 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 9999999999998999999999999 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHHHhhC
Q 024133 215 IYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYY 255 (272)
Q Consensus 215 l~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~~~~~ 255 (272)
|..+.+||..++++++|++|+++|+++++++|+++++.+++
T Consensus 161 l~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~~~ 201 (212)
T 1ryp_L 161 ILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVK 201 (212)
T ss_dssp HHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHH
T ss_pred HHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988874
No 25
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.1e-47 Score=339.50 Aligned_cols=211 Identities=14% Similarity=0.237 Sum_probs=191.2
Q ss_pred CCcchh-hHh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHH
Q 024133 37 TDFDEF-QKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114 (272)
Q Consensus 37 ~~g~~~-q~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l 114 (272)
|++++. |+| |++||+ +|+|+|||+++||||||+|+| +++.+||++|++||+|++||..+|++.|.+++
T Consensus 9 Pe~~~~~qvEYA~~av~--~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~ 78 (259)
T 1q5q_A 9 AEQIMRDRSELARKGIA--RGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAG 78 (259)
T ss_dssp CHHHHHHHHHHHHHHHH--TSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--cCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHH
Confidence 588885 999 999998 999999999999999999998 36789999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CcCCHhHHHHHHHHHH---HhccCCcceeEEEEEEEc----CCCCeeEEEeCCCcee-ecCceEEcc
Q 024133 115 GIKCRLHELANK-RRISVTGASKLLANIL---YSYRGMGLSVGTMIAGWD----ETGPGLYYVDSEGGRL-KGTRFSVGS 185 (272)
Q Consensus 115 ~~~~~~~~~~~~-~~i~v~~la~~ls~~l---~~~R~~p~~v~~iiaG~D----~~gp~Ly~iDp~G~~~-~~~~~AiG~ 185 (272)
+.+++.|++.++ ++++++.+++++++++ |.+|..||+|++|||||| ++||+||++||+|++. ++++.|+|+
T Consensus 79 ~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~ 158 (259)
T 1q5q_A 79 IVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGG 158 (259)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESS
T ss_pred HHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECC
Confidence 999999999988 4999999999999953 444556788999999999 6889999999999999 889999999
Q ss_pred ChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHH-----hhcccCCCcEEEEEEcCC----CeEEcCcchHHHHHHhhCC
Q 024133 186 GSPYAYGVLDSGYKFDMSIEEAAELARRAIYHAT-----FRDAASGGVASVYYVGPN----GWKKLSGDDVGELHYHYYP 256 (272)
Q Consensus 186 gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~-----~rd~~sg~~v~v~ii~kd----g~~~l~~~ei~~~~~~~~~ 256 (272)
|+..++++||+.|+++||++||++++++||..+. +||. ++++++|++|+++ +|++++++||++++.++..
T Consensus 159 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~~ 237 (259)
T 1q5q_A 159 TTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPA 237 (259)
T ss_dssp SHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC--
T ss_pred ChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998 8998 8999999999998 7999999999999988866
Q ss_pred CC
Q 024133 257 VT 258 (272)
Q Consensus 257 ~~ 258 (272)
.+
T Consensus 238 ~~ 239 (259)
T 1q5q_A 238 AA 239 (259)
T ss_dssp --
T ss_pred cc
Confidence 54
No 26
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.2e-47 Score=332.95 Aligned_cols=203 Identities=24% Similarity=0.258 Sum_probs=195.3
Q ss_pred HhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHH-hh
Q 024133 47 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL-AN 125 (272)
Q Consensus 47 ~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~-~~ 125 (272)
.++|+ +|||+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||..+|++.|.++++.+++.|++ .+
T Consensus 2 ~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 79 (219)
T 1iru_N 2 QNPMV--TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGD 79 (219)
T ss_dssp CSCCS--EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCcc--CCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35676 9999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred CCcCCHhHHHHHHHHHHHhcc--CCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCC--C
Q 024133 126 KRRISVTGASKLLANILYSYR--GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKF--D 201 (272)
Q Consensus 126 ~~~i~v~~la~~ls~~l~~~R--~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~--~ 201 (272)
+++++++.+++++++++|.+| ..|+++++||+|||++||+||++||+|++.++++.|+|+|+.+++++||+.|++ +
T Consensus 80 ~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 80 GHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 999999999999999999877 458899999999998899999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHHH
Q 024133 202 MSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELH 251 (272)
Q Consensus 202 ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~~ 251 (272)
||.+||++++++||..+.+||..++++++|++|+++|++.+++++++..|
T Consensus 160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~ 209 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNW 209 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchh
Confidence 99999999999999999999999999999999999999999999998875
No 27
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.8e-46 Score=338.68 Aligned_cols=211 Identities=27% Similarity=0.355 Sum_probs=198.0
Q ss_pred HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhh
Q 024133 46 TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELAN 125 (272)
Q Consensus 46 a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~ 125 (272)
|++|++ +|||+|||+++||||||+|+|.++|+++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|++.+
T Consensus 58 a~~Av~--~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~ 135 (294)
T 1q5r_H 58 SGDLAP--HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIE 135 (294)
T ss_dssp --CCSC--BCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--cCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhh
Confidence 888998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCHhHHHHHHHHHHHhccC---CcceeEEEEEEEcCC-C-----CeeEEEeCCCceeec--CceEEccChhHHHHHH
Q 024133 126 KRRISVTGASKLLANILYSYRG---MGLSVGTMIAGWDET-G-----PGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVL 194 (272)
Q Consensus 126 ~~~i~v~~la~~ls~~l~~~R~---~p~~v~~iiaG~D~~-g-----p~Ly~iDp~G~~~~~--~~~AiG~gs~~a~~~L 194 (272)
+++++++.+++.|++++|.+|. .||++++||+|||++ | |+||++||+|+++++ ++.|+|+|+.+++++|
T Consensus 136 g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 136 GVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 9999999999999999998754 478899999999975 6 999999999999999 8999999999999999
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCc--E-----EEEEEcCCCeEEcCcchHHHHHHhhCCCC
Q 024133 195 DSGYKFDMSIEEAAELARRAIYHATFRDAASGGV--A-----SVYYVGPNGWKKLSGDDVGELHYHYYPVT 258 (272)
Q Consensus 195 e~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~--v-----~v~ii~kdg~~~l~~~ei~~~~~~~~~~~ 258 (272)
|+.|+++||++||++++++||..+.++|..+++. + +|++|+++|+++++++|+++++.++...+
T Consensus 216 e~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~~i~~~~ 286 (294)
T 1q5r_H 216 KKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAER 286 (294)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHCC--
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988764 6 99999999999999999999999997654
No 28
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.4e-46 Score=322.96 Aligned_cols=197 Identities=31% Similarity=0.487 Sum_probs=190.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRA 214 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~a 214 (272)
+++++++|.+|. |+++++||+|||+ +||+||.+||+|++.++++.++|+|+.+++++||+.|+++||.+||++++++|
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~a 159 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA 159 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999987 8999999999997 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCcEEEEEEcCCCe--EEcCcchHHHHHHh
Q 024133 215 IYHATFRDAASGGVASVYYVGPNGW--KKLSGDDVGELHYH 253 (272)
Q Consensus 215 l~~a~~rd~~sg~~v~v~ii~kdg~--~~l~~~ei~~~~~~ 253 (272)
|..+.+||..++++++|++|+++|+ +.++++||++++.+
T Consensus 160 l~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 160 LALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 9999999999999999999999985 57999999988765
No 29
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=4.4e-47 Score=332.38 Aligned_cols=208 Identities=20% Similarity=0.264 Sum_probs=197.1
Q ss_pred HhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHH---
Q 024133 47 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL--- 123 (272)
Q Consensus 47 ~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~--- 123 (272)
.++|+ +|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|++
T Consensus 2 ~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 79 (233)
T 1ryp_N 2 QQPIV--TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNP 79 (233)
T ss_dssp CCCCE--EECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccc--CCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccc
Confidence 35677 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --hhCCcCCHhHHHHHHHHHHHhcc--CCcceeEEEEEEEcCC-CCeeEEEeCCCceeecCceEEccChhHHHHHHHccC
Q 024133 124 --ANKRRISVTGASKLLANILYSYR--GMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGY 198 (272)
Q Consensus 124 --~~~~~i~v~~la~~ls~~l~~~R--~~p~~v~~iiaG~D~~-gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~ 198 (272)
.++++++++.+++++++++|.+| ..||++++||+|||++ ||+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 80 ~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 80 LADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 89999999999999999999887 3588999999999975 899999999999999999999999999999999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC-CeEEcCcchHHHHHHhhCC
Q 024133 199 KF-----DMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN-GWKKLSGDDVGELHYHYYP 256 (272)
Q Consensus 199 ~~-----~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd-g~~~l~~~ei~~~~~~~~~ 256 (272)
++ +||++||++++++||..+.+||..++++++|++|+++ |++.++++||++++-++++
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w~~~~ 223 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAK 223 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGG
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccchhhh
Confidence 99 9999999999999999999999999999999999999 9999999999998324544
No 30
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=3.9e-46 Score=326.71 Aligned_cols=203 Identities=29% Similarity=0.426 Sum_probs=192.0
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAI 215 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al 215 (272)
+++++++|.++. |+++++||||||++||+||++||+|++.++++.|+|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~l~~~~~-p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (234)
T 3unf_H 81 RILRQTLFRYQG-HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAI 159 (234)
T ss_dssp HHHHHHHHHTTT-CSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 999999998765 6889999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHH------HHHhhCCCCC
Q 024133 216 YHATFRDAASGGVASVYYVGPNGWKKLSGDDVGE------LHYHYYPVTP 259 (272)
Q Consensus 216 ~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~------~~~~~~~~~~ 259 (272)
..+..||..++++++|++|+++|++.+++++++. ..++|.+.++
T Consensus 160 ~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~~~~~~~~~~~~~~ 209 (234)
T 3unf_H 160 TAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQRAGRYRFAPGTT 209 (234)
T ss_dssp HHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCCCCCCCCCCCTTCS
T ss_pred HHHHhhcCCCCCcEEEEEEECCCEEEeCceecccccccccccccCCCCCc
Confidence 9999999999999999999999999999988754 4555655443
No 31
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=5.8e-46 Score=319.20 Aligned_cols=193 Identities=26% Similarity=0.426 Sum_probs=185.6
Q ss_pred HhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhC
Q 024133 47 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK 126 (272)
Q Consensus 47 ~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~ 126 (272)
.++++ +|||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.++
T Consensus 3 ~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (205)
T 1ryp_H 3 KGEVS--LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYG 80 (205)
T ss_dssp TTCCB--CCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCc--CCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46777 9999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CcCCHhHHHHHHHHHHHhccCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHH
Q 024133 127 RRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIE 205 (272)
Q Consensus 127 ~~i~v~~la~~ls~~l~~~R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~e 205 (272)
+ ++++.+++++++++|.+|.. +++++||+|||+ +||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||.+
T Consensus 81 ~-~~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~e 158 (205)
T 1ryp_H 81 T-PSTETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKE 158 (205)
T ss_dssp S-CCHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHH
T ss_pred C-CCHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHH
Confidence 9 99999999999999999887 889999999997 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcC
Q 024133 206 EAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKLS 243 (272)
Q Consensus 206 eai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~ 243 (272)
||++++++||..+.+||..++++++|++|+++|+++..
T Consensus 159 ea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~ 196 (205)
T 1ryp_H 159 ETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI 196 (205)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEE
Confidence 99999999999999999999999999999999987643
No 32
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.3e-45 Score=328.08 Aligned_cols=200 Identities=31% Similarity=0.418 Sum_probs=182.6
Q ss_pred HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhh
Q 024133 46 TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELAN 125 (272)
Q Consensus 46 a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~ 125 (272)
..+|++ +|||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++.+
T Consensus 22 ~~kav~--~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~ 99 (261)
T 3nzj_H 22 QPKATS--TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYT 99 (261)
T ss_dssp ----------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccc--cCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhh
Confidence 567887 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCHhHHHHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHH
Q 024133 126 KRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIE 205 (272)
Q Consensus 126 ~~~i~v~~la~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~e 205 (272)
+++++++.+++++++.++.++. |+++++||||||++||+||++||+|++.++++.|+|+|+.+++++||+.|+++||+|
T Consensus 100 ~~~~~v~~~a~~l~~~l~~~~~-~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 178 (261)
T 3nzj_H 100 SREPRVVSALQMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKE 178 (261)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTT-CSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-cccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHH
Confidence 9999999999999999998754 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC-eEEcCcchHH
Q 024133 206 EAAELARRAIYHATFRDAASGGVASVYYVGPNG-WKKLSGDDVG 248 (272)
Q Consensus 206 eai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg-~~~l~~~ei~ 248 (272)
||++++++||..+.+||..++++++|++|+++| ++.+.+..+.
T Consensus 179 EA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~ 222 (261)
T 3nzj_H 179 EAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTP 222 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCC
Confidence 999999999999999999999999999999999 6655554433
No 33
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=3.2e-45 Score=316.19 Aligned_cols=189 Identities=24% Similarity=0.314 Sum_probs=182.3
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhH
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~ 133 (272)
+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||..+|++.+.++++.+++.|++.++++++++.
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 87 (213)
T 1iru_M 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGA 87 (213)
T ss_dssp CCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcceeEEEEEEEcCCC-CeeEEEeCCCceeecCceEEccChhHHHHHHHcc---------CCCCCC
Q 024133 134 ASKLLANILYSYRGMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG---------YKFDMS 203 (272)
Q Consensus 134 la~~ls~~l~~~R~~p~~v~~iiaG~D~~g-p~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~---------~~~~ms 203 (272)
+++++++++|.+|..||++++||+|||++| |+||.+||+|++.++++.|+|+|+.+++++||+. |+++||
T Consensus 88 la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s 167 (213)
T 1iru_M 88 IAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLS 167 (213)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCC
T ss_pred HHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCC
Confidence 999999999988877899999999999755 9999999999999999999999999999999999 888999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEc
Q 024133 204 IEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKL 242 (272)
Q Consensus 204 ~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l 242 (272)
++||++++++||..+.+||..++++++|++|+++|++..
T Consensus 168 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 168 LDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 999999999999999999999999999999999998753
No 34
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=3.7e-45 Score=318.02 Aligned_cols=189 Identities=23% Similarity=0.282 Sum_probs=182.6
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhC-CcCCHh
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK-RRISVT 132 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~i~v~ 132 (272)
+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++++||..+|++.+.++++.+++.|++.++ ++++++
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~ 87 (222)
T 1ryp_M 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSIN 87 (222)
T ss_dssp CCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHH
T ss_pred CCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhccCCcceeEEEEEEEcCCC-CeeEEEeCCCceeecCceEEccChhHHHHHHHcc--------------
Q 024133 133 GASKLLANILYSYRGMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG-------------- 197 (272)
Q Consensus 133 ~la~~ls~~l~~~R~~p~~v~~iiaG~D~~g-p~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~-------------- 197 (272)
.+|+++++++|.+|.+||++++||+|||++| |+||++||+|++.++++.|+|+|+.+++++||+.
T Consensus 88 ~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~ 167 (222)
T 1ryp_M 88 SAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGK 167 (222)
T ss_dssp HHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTC
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccc
Confidence 9999999999998877899999999999755 9999999999999999999999999999999998
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCCeEEc
Q 024133 198 ---YKFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNGWKKL 242 (272)
Q Consensus 198 ---~~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l 242 (272)
|+++||+|||++++++||..+.+||..++++++|++|+++|++..
T Consensus 168 ~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~ 215 (222)
T 1ryp_M 168 VKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE 215 (222)
T ss_dssp SBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEE
Confidence 889999999999999999999999999999999999999998753
No 35
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.2e-45 Score=312.76 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=182.8
Q ss_pred CceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHH
Q 024133 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (272)
Q Consensus 55 Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~l 134 (272)
.||+|||+++||||||+|+|.+.|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 37999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC--CcceeEEEEEEEcC--CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHH
Q 024133 135 SKLLANILYSYRG--MGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAEL 210 (272)
Q Consensus 135 a~~ls~~l~~~R~--~p~~v~~iiaG~D~--~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l 210 (272)
++++++++|.++. .||++++||+|||+ +||+||++||+|++.++++.|+|+|+.+++++||+.|+++||++||+++
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 160 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL 160 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 9999999998742 48899999999995 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCcc
Q 024133 211 ARRAIYHATFRDAASGGVASVYYVGPNGWKKLSGD 245 (272)
Q Consensus 211 ~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ 245 (272)
+++||..+.+||..++++++|++|+++|++++++-
T Consensus 161 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 195 (198)
T 1ryp_K 161 LKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDF 195 (198)
T ss_dssp HHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCC
T ss_pred HHHHHHHHHHhCccCCCceEEEEEcCCCEEEeccc
Confidence 99999999999999999999999999999998763
No 36
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=3.3e-46 Score=333.01 Aligned_cols=209 Identities=21% Similarity=0.267 Sum_probs=198.5
Q ss_pred HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHH--
Q 024133 46 TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL-- 123 (272)
Q Consensus 46 a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~-- 123 (272)
++++++ +|||+|||+++||||||+|+|.+.|.++.+++.+||++|+++|+|++||..+|++.|.++++.+++.|++
T Consensus 34 ~~~av~--~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~ 111 (266)
T 1g0u_M 34 TQQPIV--TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDN 111 (266)
T ss_dssp CCCCCE--EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hccCcc--cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 788898 9999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---hhCCcCCHhHHHHHHHHHHHhcc--CCcceeEEEEEEEcCC-CCeeEEEeCCCceeecCceEEccChhHHHHHHHcc
Q 024133 124 ---ANKRRISVTGASKLLANILYSYR--GMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197 (272)
Q Consensus 124 ---~~~~~i~v~~la~~ls~~l~~~R--~~p~~v~~iiaG~D~~-gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~ 197 (272)
.++++++++.+++++++++|.+| ..|+++++||+|||++ ||+||++||+|++.++++.|+|+|+.+++++||+.
T Consensus 112 ~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 191 (266)
T 1g0u_M 112 PLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKV 191 (266)
T ss_dssp TTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTT
T ss_pred chhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHh
Confidence 89999999999999999999877 3588999999999975 89999999999999999999999999999999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCC-CeEEcCcchHHHHHHhhCC
Q 024133 198 YKF-----DMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPN-GWKKLSGDDVGELHYHYYP 256 (272)
Q Consensus 198 ~~~-----~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kd-g~~~l~~~ei~~~~~~~~~ 256 (272)
|++ +||++||++++++||..+.+||..++++++|++|+++ |++.++++||++++-.+++
T Consensus 192 ~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~~~~ 256 (266)
T 1g0u_M 192 VDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAK 256 (266)
T ss_dssp CSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCGGGG
T ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhhHHh
Confidence 999 9999999999999999999999999999999999999 9999999999998324443
No 37
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4.4e-45 Score=320.18 Aligned_cols=200 Identities=28% Similarity=0.377 Sum_probs=190.2
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|+++++|++||..+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC---CcceeEEEEEEEcCC-C-----CeeEEEeCCCceeec--CceEEccChhHHHHHHHccCCCCCCH
Q 024133 136 KLLANILYSYRG---MGLSVGTMIAGWDET-G-----PGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVLDSGYKFDMSI 204 (272)
Q Consensus 136 ~~ls~~l~~~R~---~p~~v~~iiaG~D~~-g-----p~Ly~iDp~G~~~~~--~~~AiG~gs~~a~~~Le~~~~~~ms~ 204 (272)
+.+++++|.+|+ .||++++||||||++ | |+||++||+|+++++ ++.|+|+|+.+++++||+.|+++||+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 999999998653 267899999999976 7 999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCc--E-----EEEEEcCCCeEEcCcchHHHHHHhhC
Q 024133 205 EEAAELARRAIYHATFRDAASGGV--A-----SVYYVGPNGWKKLSGDDVGELHYHYY 255 (272)
Q Consensus 205 eeai~l~~~al~~a~~rd~~sg~~--v-----~v~ii~kdg~~~l~~~ei~~~~~~~~ 255 (272)
+||++++++||..+.++|..+++. + +|++|+++|+++++++|+++++.++.
T Consensus 161 eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~~~~ 218 (235)
T 1q5q_H 161 ETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIV 218 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHHHHH
Confidence 999999999999999999988763 2 99999999999999999999999884
No 38
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=8.3e-45 Score=311.89 Aligned_cols=189 Identities=25% Similarity=0.263 Sum_probs=181.2
Q ss_pred CCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHh
Q 024133 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (272)
Q Consensus 53 ~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~ 132 (272)
.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 85 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPY 85 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred CCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 39999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcceeEEEEEEEcC--CCCeeEEEeCCCceeecCc-eEEccChhHHHHHHHccCCCCCCHHHHHH
Q 024133 133 GASKLLANILYSYRGMGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGTR-FSVGSGSPYAYGVLDSGYKFDMSIEEAAE 209 (272)
Q Consensus 133 ~la~~ls~~l~~~R~~p~~v~~iiaG~D~--~gp~Ly~iDp~G~~~~~~~-~AiG~gs~~a~~~Le~~~~~~ms~eeai~ 209 (272)
.+++++++++|.+|..|+++++||+|||+ +||+||++||+|++.++.. .|+|+|+.+++++||+.|+++||++||++
T Consensus 86 ~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 165 (205)
T 1iru_J 86 TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFE 165 (205)
T ss_dssp HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHH
Confidence 99999999999988778999999999995 6899999999999988766 78999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEEcCCCeEE
Q 024133 210 LARRAIYHATFRDAASGGVASVYYVGPNGWKK 241 (272)
Q Consensus 210 l~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~ 241 (272)
++++||..+.+||..++++++|++|+++|++.
T Consensus 166 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 197 (205)
T 1iru_J 166 TISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 197 (205)
T ss_dssp HHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred HHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence 99999999999999999999999999999864
No 39
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.9e-45 Score=313.20 Aligned_cols=193 Identities=33% Similarity=0.523 Sum_probs=184.1
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEE-ccChhHHHHHHHccCCCCCCHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEEAAELARR 213 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~Ai-G~gs~~a~~~Le~~~~~~ms~eeai~l~~~ 213 (272)
+++++++|.+|. |+++++||||||+ +||+||. |+|++.++..+++ |+|+.+++++||+.|+++||++||++++++
T Consensus 81 ~~l~~~l~~~~~-p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~ 157 (199)
T 3unf_N 81 NVVKNISYKYRE-DLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTN 157 (199)
T ss_dssp HHHHHHHHHTTT-TCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 999999999875 7899999999997 5799999 9999888887765 999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCcEEEEEEcCCC--eEEcCcchHHHHH
Q 024133 214 AIYHATFRDAASGGVASVYYVGPNG--WKKLSGDDVGELH 251 (272)
Q Consensus 214 al~~a~~rd~~sg~~v~v~ii~kdg--~~~l~~~ei~~~~ 251 (272)
||..+.+||..++++++|++|+++| ++.++++||++++
T Consensus 158 al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 158 AITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred HHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 9999999999999999999999998 6779999998764
No 40
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.1e-44 Score=319.85 Aligned_cols=211 Identities=16% Similarity=0.191 Sum_probs=181.9
Q ss_pred CCCCCcchhh---Hh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHH
Q 024133 34 PLSTDFDEFQ---KD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109 (272)
Q Consensus 34 p~~~~g~~~q---~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 109 (272)
|....+.++- +| |++||+ +|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.
T Consensus 4 ~~~~~p~~~~~~r~EYA~~av~--~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~ 73 (248)
T 3mi0_A 4 PYFISPEQAMRERSELARKGIA--RAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDN 73 (248)
T ss_dssp ----CHHHHHHHHHHHHHHHHH--TSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHH
T ss_pred CccCCHHHhcccchHHHHHHHh--CCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHH
Confidence 4344444443 46 999998 999999999999999999999 357899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhC-CcCCHhHHHHHHHH-HHHhc--cCCcceeEEEEEEEcC----CCCeeEEEeCCCceee-cCc
Q 024133 110 WHRNLGIKCRLHELANK-RRISVTGASKLLAN-ILYSY--RGMGLSVGTMIAGWDE----TGPGLYYVDSEGGRLK-GTR 180 (272)
Q Consensus 110 l~~~l~~~~~~~~~~~~-~~i~v~~la~~ls~-~l~~~--R~~p~~v~~iiaG~D~----~gp~Ly~iDp~G~~~~-~~~ 180 (272)
+.+.++..++.|++.++ ++++++.+++++++ +.|.| +..||+|++||+|||+ +||+||++||+|++.. +++
T Consensus 74 l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~ 153 (248)
T 3mi0_A 74 LRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHF 153 (248)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccE
Confidence 99999999999999999 89999999999994 44433 3457789999999998 7899999999999995 999
Q ss_pred eEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHHHHHH-------hhcccCCCcEEEEEEcCCC----eEEcCcchHHH
Q 024133 181 FSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAIYHAT-------FRDAASGGVASVYYVGPNG----WKKLSGDDVGE 249 (272)
Q Consensus 181 ~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~-------~rd~~sg~~v~v~ii~kdg----~~~l~~~ei~~ 249 (272)
.|+|+|+..++++||++|+++||++||++++++||..+. ++ ..++.+++|++|+++| |++++++||++
T Consensus 154 ~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~-~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~ 232 (248)
T 3mi0_A 154 VVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQP-TLGVASLEVAVLDANRPRRAFRRITGSALQA 232 (248)
T ss_dssp EEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHH
T ss_pred EEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCccc-ccCCCcEEEEEEECCCCcccEEECCHHHHHH
Confidence 999999999999999999999999999999999999998 55 4678899999999998 99999999999
Q ss_pred HHHhhC
Q 024133 250 LHYHYY 255 (272)
Q Consensus 250 ~~~~~~ 255 (272)
++.+..
T Consensus 233 ~l~~~~ 238 (248)
T 3mi0_A 233 LLVDQE 238 (248)
T ss_dssp TC----
T ss_pred HHHHcC
Confidence 998764
No 41
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.9e-44 Score=308.30 Aligned_cols=187 Identities=25% Similarity=0.259 Sum_probs=179.9
Q ss_pred CCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhH
Q 024133 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (272)
Q Consensus 54 ~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~ 133 (272)
+|||+|||+++||||||+|+|.+.|.++.+++.+||++|+ ++++++||..+|++.+.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 85 (204)
T 1ryp_J 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPET 85 (204)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 9999999999999999999999999998888999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcceeEEEEEEEcC--CCCeeEEEeCCCceeecCc-eEEccChhHHHHHHHccCCCCCCHHHHHHH
Q 024133 134 ASKLLANILYSYRGMGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGTR-FSVGSGSPYAYGVLDSGYKFDMSIEEAAEL 210 (272)
Q Consensus 134 la~~ls~~l~~~R~~p~~v~~iiaG~D~--~gp~Ly~iDp~G~~~~~~~-~AiG~gs~~a~~~Le~~~~~~ms~eeai~l 210 (272)
+++++++++|.+|..|+++++||+|||+ +||+||++||+|++.++.. .|+|+|+.+++++||+.|+++||++||+++
T Consensus 86 la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 165 (204)
T 1ryp_J 86 FTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFET 165 (204)
T ss_dssp HHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHH
Confidence 9999999999988779999999999995 6899999999999988765 789999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEcCCCeEE
Q 024133 211 ARRAIYHATFRDAASGGVASVYYVGPNGWKK 241 (272)
Q Consensus 211 ~~~al~~a~~rd~~sg~~v~v~ii~kdg~~~ 241 (272)
+++||..+.+||..++++++|++|+++|++.
T Consensus 166 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 166 ISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp HHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred HHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence 9999999999999999999999999999864
No 42
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.5e-44 Score=314.20 Aligned_cols=194 Identities=31% Similarity=0.427 Sum_probs=185.1
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAI 215 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al 215 (272)
+++++.+|.+|. |+++++||||||++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~l~~~~~-p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (222)
T 1ryp_I 81 QMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAI 159 (222)
T ss_dssp HHHHHHHHHTTT-CSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC-CCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Confidence 999999998864 6889999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEcCCC-eEEcCcchHHHH
Q 024133 216 YHATFRDAASGGVASVYYVGPNG-WKKLSGDDVGEL 250 (272)
Q Consensus 216 ~~a~~rd~~sg~~v~v~ii~kdg-~~~l~~~ei~~~ 250 (272)
..+.+||..++++++|++++++| ++.+.+.++..-
T Consensus 160 ~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~ 195 (222)
T 1ryp_I 160 QAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNV 195 (222)
T ss_dssp HHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCC
T ss_pred HHHHhccccCCCcEEEEEEECCCCEEEEeceecCCc
Confidence 99999999999999999999999 998776665443
No 43
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=5e-45 Score=328.90 Aligned_cols=212 Identities=24% Similarity=0.319 Sum_probs=173.4
Q ss_pred Hh-HHhhccCCCCceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHH
Q 024133 44 KD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE 122 (272)
Q Consensus 44 ~e-a~~av~~~~Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~ 122 (272)
+| |++ ++ +|||+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+
T Consensus 48 ~~ya~~-v~--~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~ 124 (291)
T 2jay_A 48 AGGDAQ-LP--HGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYE 124 (291)
T ss_dssp -------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-cc--CCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhh
Confidence 45 777 66 999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HhhCCcCCHhHHHHHHHHHHHhccCC---cceeEEEEEEEcCC-C-----CeeEEEeCCCcee--ecCceEEccChhHHH
Q 024133 123 LANKRRISVTGASKLLANILYSYRGM---GLSVGTMIAGWDET-G-----PGLYYVDSEGGRL--KGTRFSVGSGSPYAY 191 (272)
Q Consensus 123 ~~~~~~i~v~~la~~ls~~l~~~R~~---p~~v~~iiaG~D~~-g-----p~Ly~iDp~G~~~--~~~~~AiG~gs~~a~ 191 (272)
+.++++++++.+++.+++++|.+|+. |++|++||||||++ + |+||++||+|+++ ++++.|+|+|+.+++
T Consensus 125 ~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~ 204 (291)
T 2jay_A 125 KLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAK 204 (291)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHH
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHH
Confidence 99999999999999999999987652 67899999999975 4 8999999999999 889999999999999
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHHhhcccCCCc--E-----EEEEEcCCCeEEcCcchHHHHHHhhCCCC
Q 024133 192 GVLDSGYKFDMSIEEAAELARRAIYHATFRDAASGGV--A-----SVYYVGPNGWKKLSGDDVGELHYHYYPVT 258 (272)
Q Consensus 192 ~~Le~~~~~~ms~eeai~l~~~al~~a~~rd~~sg~~--v-----~v~ii~kdg~~~l~~~ei~~~~~~~~~~~ 258 (272)
++||+.|+++||++||++++++||..+.++|..+++. + +|++|+++|+++++++||++++..+...+
T Consensus 205 ~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~~~ei~~~~~~~~~~~ 278 (291)
T 2jay_A 205 SSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESR 278 (291)
T ss_dssp HHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECCHHHHHHHHHHC----
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999988764 2 69999999999999999999999987654
No 44
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.6e-44 Score=307.87 Aligned_cols=190 Identities=24% Similarity=0.264 Sum_probs=180.2
Q ss_pred CceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHH
Q 024133 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (272)
Q Consensus 55 Gtt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~l 134 (272)
.||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhccC-CcceeEEEEEEEcC-CCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHH
Q 024133 135 SKLLANIL-YSYRG-MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELA 211 (272)
Q Consensus 135 a~~ls~~l-~~~R~-~p~~v~~iiaG~D~-~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~ 211 (272)
++++++.+ +.+|. .|+++++||+|||+ +||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||++||++++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~ 160 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELL 160 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 99998765 54343 47889999999997 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEcCCCeEEcCc
Q 024133 212 RRAIYHATFRDAASGGVASVYYVGPNGWKKLSG 244 (272)
Q Consensus 212 ~~al~~a~~rd~~sg~~v~v~ii~kdg~~~l~~ 244 (272)
++||..+.+||..++++++|++|+++|++.++.
T Consensus 161 ~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~ 193 (201)
T 1iru_K 161 RKCLEELQKRFILNLPTFSVRIIDKNGIHDLDN 193 (201)
T ss_dssp HHHHHHHHHTBCBCCCCEEEEEEETTEEECCCC
T ss_pred HHHHHHHHhhccccCCceEEEEEcCCCeEEeec
Confidence 999999999999999999999999999998764
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=4.8e-44 Score=313.47 Aligned_cols=194 Identities=30% Similarity=0.433 Sum_probs=185.6
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEecCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la 135 (272)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecCceEEccChhHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 024133 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEEAAELARRAI 215 (272)
Q Consensus 136 ~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~~~AiG~gs~~a~~~Le~~~~~~ms~eeai~l~~~al 215 (272)
+++++.+|.+|. |+++++||||||++||+||.+||+|++.++++.|+|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~l~~~~~-~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (234)
T 1iru_I 81 RMLKQMLFRYRG-YIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAI 159 (234)
T ss_dssp HHHHHHHHHTTT-CSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHH
T ss_pred HHHHHHHHhcCC-CCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 999999998875 5889999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEcCCCeEEcCcchHHHH
Q 024133 216 YHATFRDAASGGVASVYYVGPNGWKKLSGDDVGEL 250 (272)
Q Consensus 216 ~~a~~rd~~sg~~v~v~ii~kdg~~~l~~~ei~~~ 250 (272)
..+..+|..++++++|++|+++|++.+.+.++..-
T Consensus 160 ~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~ 194 (234)
T 1iru_I 160 AAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNK 194 (234)
T ss_dssp HHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCC
T ss_pred HHHHHhcccCCCCEEEEEEECCcEEEEcceecCcc
Confidence 99999999999999999999999998876665554
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.3e-36 Score=253.25 Aligned_cols=168 Identities=18% Similarity=0.207 Sum_probs=153.6
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEe-cCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~l 134 (272)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||..+|++.|.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999999999999999999 9999999999999999999999999999985 45556
Q ss_pred HHHHHHHHHhccCCcceeEEEEEEEcCCCCeeEEEeCCCceeecC---ceEEccChhHHHHHHHccCC-CCCCHHHHHHH
Q 024133 135 SKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT---RFSVGSGSPYAYGVLDSGYK-FDMSIEEAAEL 210 (272)
Q Consensus 135 a~~ls~~l~~~R~~p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~---~~AiG~gs~~a~~~Le~~~~-~~ms~eeai~l 210 (272)
+..+++.++.+|..+ .++.+++|+| +|+||++||+|++.+++ +.|+|+|+.+++++||+.|+ ++||.+ ++
T Consensus 75 ~~~l~~~~~~~~~~r-~~~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~l 148 (174)
T 1g3k_A 75 AVELAKDWRTDRALR-KLEAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---EI 148 (174)
T ss_dssp HHHHHHHHHHSTTGG-GCCCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---HH
T ss_pred HHHHHHHHHhccCcC-cceEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---HH
Confidence 677788887766543 2567889998 79999999999999988 89999999999999999999 999965 79
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEc
Q 024133 211 ARRAIYHATFRDAASGGVASVYYVG 235 (272)
Q Consensus 211 ~~~al~~a~~rd~~sg~~v~v~ii~ 235 (272)
+++||..+.+||..++++++|++|+
T Consensus 149 ~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 149 VEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HHHHHHHHHHhccccCCceEEEEec
Confidence 9999999999999999999999986
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=6.4e-36 Score=251.93 Aligned_cols=170 Identities=21% Similarity=0.187 Sum_probs=150.5
Q ss_pred CCCceEEEEEeCCeEEEEEeCCCcCCce-eeccccceEEEe-cCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCC
Q 024133 53 AKGTTTLAFIFKEGVMVAADSRASMGGY-ISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRIS 130 (272)
Q Consensus 53 ~~Gtt~vgik~kdgVvlAaD~r~t~g~l-i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~ 130 (272)
.+|||+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|+++++||..+|++.|.++++.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 4899999999999999999999999988 999999999999 999999999999999999999999999998 3 22
Q ss_pred HhHHHHHHHHHHHhccCC-cceeEEEEEEEcCCCCeeEEEeCCCceeec--CceEEccChhHHHHHHHccCCC---CCCH
Q 024133 131 VTGASKLLANILYSYRGM-GLSVGTMIAGWDETGPGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVLDSGYKF---DMSI 204 (272)
Q Consensus 131 v~~la~~ls~~l~~~R~~-p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~--~~~AiG~gs~~a~~~Le~~~~~---~ms~ 204 (272)
++.++ .+++.++.++.+ |+.+++||+ | +|+||++||+|++.++ ++.|+|+|+.+++++||+.|++ +||.
T Consensus 78 ~~~~~-~l~~~~~~~~~~rp~~~~~lva--d--~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ 152 (180)
T 2z3b_A 78 KRAAV-ELAKEWRSDKVLRKLEAMLIVM--N--QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSA 152 (180)
T ss_dssp HHHHH-HHHHHHHHCTTGGGCCCCEEEE--C--SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCH
T ss_pred HHHHH-HHHHHHHhhhCcCcceEEEEEE--c--CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCH
Confidence 33333 456666555433 577888988 4 7999999999999984 8899999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCcEEEEEEc
Q 024133 205 EEAAELARRAIYHATFRDAASGGVASVYYVG 235 (272)
Q Consensus 205 eeai~l~~~al~~a~~rd~~sg~~v~v~ii~ 235 (272)
|| ++++||..+.+||.++|++++|++|+
T Consensus 153 ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 153 SE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp HH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 99 47799999999999999999999883
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.4e-35 Score=247.63 Aligned_cols=166 Identities=19% Similarity=0.229 Sum_probs=149.5
Q ss_pred ceEEEEEeCCeEEEEEeCCCcCCceeeccccceEEEe-cCcEEEEecCChhhHHHHHHHHHHHHHHHHHhhCCcCCHhHH
Q 024133 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (272)
Q Consensus 56 tt~vgik~kdgVvlAaD~r~t~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~l 134 (272)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||..+|++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999999999999999999 99999999999999999999999999998854 26666
Q ss_pred HHHHHHHHHhccCC-cceeEEEEEEEcCCCCeeEEEeCCCceeecC--ceEEccChhHHHHHHHccCC-CCCCHHHHHHH
Q 024133 135 SKLLANILYSYRGM-GLSVGTMIAGWDETGPGLYYVDSEGGRLKGT--RFSVGSGSPYAYGVLDSGYK-FDMSIEEAAEL 210 (272)
Q Consensus 135 a~~ls~~l~~~R~~-p~~v~~iiaG~D~~gp~Ly~iDp~G~~~~~~--~~AiG~gs~~a~~~Le~~~~-~~ms~eeai~l 210 (272)
+++.+ .++.+|.. |+++++|++ | ||+||++||+|++.+++ +.|+|+|+.+++++||+.|+ ++||. .++
T Consensus 76 ~~l~~-~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l 147 (171)
T 1m4y_A 76 VELAK-DWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REI 147 (171)
T ss_dssp HHHHH-HHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHH
T ss_pred HHHHH-HHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHH
Confidence 66644 66666544 377877777 5 89999999999999988 99999999999999999999 99997 678
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEE
Q 024133 211 ARRAIYHATFRDAASGGVASVYYV 234 (272)
Q Consensus 211 ~~~al~~a~~rd~~sg~~v~v~ii 234 (272)
+++||..+.+||..++++++|.++
T Consensus 148 ~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 148 VEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHhCcccCCeEEEEEC
Confidence 999999999999999999999864
No 49
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=38.26 E-value=33 Score=24.53 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEcCCC--eEEcCcchHHHHHHhhCCCC
Q 024133 199 KFDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPNG--WKKLSGDDVGELHYHYYPVT 258 (272)
Q Consensus 199 ~~~ms~eeai~l~~~al~~a~~rd~~sg~~v~v~ii~kdg--~~~l~~~ei~~~~~~~~~~~ 258 (272)
.++++.++..+.++..++ ...+..+.+.+++.+| +...+.+|+++.++-|+..+
T Consensus 23 ~~~i~~~~L~~kv~~~~~------~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~ 78 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCS------FDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNK 78 (89)
T ss_dssp CTTCCHHHHHHHHHHHTT------CCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHhC------CCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccC
Confidence 457889988887776432 1245679999999976 78899999999987665433
Done!