BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024134
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 180/258 (69%)
Query: 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEP 73
K+ KHFVLVHG+ HG W WYK+KP LEAAGH+VTA+DLAASG +++KI+++R+ Y+Y P
Sbjct: 2 KEGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLP 61
Query: 74 LLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVER 133
L E+ SLSADEKVILVGHS GG ++ LA +K+P KI A+FL AF PD+ H S+V+E+
Sbjct: 62 LXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQ 121
Query: 134 FSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLL 193
++E P E LDTQ+ S FG KFL KLYQL PEDL LA LV+P L
Sbjct: 122 YNERTPAENWLDTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPEDLALASSLVRPSSL 181
Query: 194 FTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAM 253
F ++LSKA F++E +GSVKR ++ +D IP+EFQ+W I N V E + IKGADH A
Sbjct: 182 FXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADHXAX 241
Query: 254 LSKPQPLSDCFSQIAHKY 271
L +PQ L +IAHKY
Sbjct: 242 LCEPQKLCASLLEIAHKY 259
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 180/258 (69%)
Query: 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEP 73
K+ KHFVLVHG+ HG W WYK+KP LEAAGH+VTA+DLAASG +++KI+++R+ Y+Y P
Sbjct: 2 KEGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLP 61
Query: 74 LLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVER 133
L E+ SLSADEKVILVGHS GG ++ LA +K+P KI A+FL AF PD+ H S+V+E+
Sbjct: 62 LXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQ 121
Query: 134 FSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLL 193
++E P E LDTQ+ S FG KFL KLYQL PEDL LA LV+P L
Sbjct: 122 YNERTPAENWLDTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPEDLALASSLVRPSSL 181
Query: 194 FTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAM 253
F ++LSKA F++E +GSVKR ++ +D IP+EFQ+W I N V E + IKGADH A
Sbjct: 182 FXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADHXAX 241
Query: 254 LSKPQPLSDCFSQIAHKY 271
L +PQ L +IAHKY
Sbjct: 242 LCEPQKLCASLLEIAHKY 259
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 185/256 (72%)
Query: 13 AKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE 72
AK+QKHFVLVHG GAW WYK+KP LE+AGH+VTA+DL+A+GIN +++ ++ +F +Y+E
Sbjct: 7 AKQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSE 66
Query: 73 PLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVE 132
PL+E++AS+ DEKV+L+GHSFGG+S+ LA + +P KISVA+F++A MPD H +Y E
Sbjct: 67 PLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFE 126
Query: 133 RFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGL 192
+++E P + LD+Q+S MS++ G +F+ LK++Q EDLELAKML +PG
Sbjct: 127 KYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGS 186
Query: 193 LFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252
LF +L+KA +FS E YGSVKR ++ ++D P EFQ+W +++ ++V IK ADHM
Sbjct: 187 LFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADHMG 246
Query: 253 MLSKPQPLSDCFSQIA 268
MLS+P+ + C I+
Sbjct: 247 MLSQPREVXKCLLDIS 262
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 125/256 (48%), Positives = 184/256 (71%)
Query: 13 AKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE 72
AK+QKHFVLVHG GAW WYK+KP LE+AGH+VTA+DL+A+GIN +++ ++ +F +Y+E
Sbjct: 7 AKQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSE 66
Query: 73 PLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVE 132
PL+E++AS+ DEKV+L+GHSFGG+S+ LA + +P KISVA+F++A MPD H +Y E
Sbjct: 67 PLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFE 126
Query: 133 RFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGL 192
+++E P + LD+Q+S MS++ G +F+ LK++Q EDLELAKML +PG
Sbjct: 127 KYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGS 186
Query: 193 LFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252
LF +L+KA +FS E YGSVKR ++ ++D P EFQ+W +++ ++V IK AD M
Sbjct: 187 LFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADAMG 246
Query: 253 MLSKPQPLSDCFSQIA 268
MLS+P+ + C I+
Sbjct: 247 MLSQPREVCKCLLDIS 262
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 125/256 (48%), Positives = 184/256 (71%)
Query: 13 AKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE 72
AK+QKHFVLVHG GAW WYK+KP LE+AGH+VTA+DL+A+GIN +++ ++ +F +Y+E
Sbjct: 1 AKQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSE 60
Query: 73 PLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVE 132
PL+E++AS+ DEKV+L+GHSFGG+S+ LA + +P KISVA+F++A MPD H +Y E
Sbjct: 61 PLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFE 120
Query: 133 RFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGL 192
+++E P + LD+Q+S MS++ G +F+ LK++Q EDLELAKML +PG
Sbjct: 121 KYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGS 180
Query: 193 LFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252
LF +L+KA +FS E YGSVKR ++ ++D P EFQ+W +++ ++V IK AD M
Sbjct: 181 LFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADAMG 240
Query: 253 MLSKPQPLSDCFSQIA 268
MLS+P+ + C I+
Sbjct: 241 MLSQPREVCKCLLDIS 256
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 274 bits (700), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 124/246 (50%), Positives = 181/246 (73%)
Query: 13 AKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE 72
AK+QKHFVLVHG GAW WYK+KP LE+AGH+VTA+DL+A+GIN +++ ++ +F +Y+E
Sbjct: 7 AKQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSE 66
Query: 73 PLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVE 132
PL+E++AS+ DEKV+L+GHSFGG+S+ LA + +P KISVA+F++A MPD H +Y E
Sbjct: 67 PLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFE 126
Query: 133 RFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGL 192
+++E P + LD+Q+S MS++ G +F+ LK++Q EDLELAKML +PG
Sbjct: 127 KYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGS 186
Query: 193 LFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252
LF +L+KA +FS E YGSVKR ++ ++D P EFQ+W +++ ++V IK ADHM
Sbjct: 187 LFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADHMG 246
Query: 253 MLSKPQ 258
MLS+P+
Sbjct: 247 MLSQPR 252
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/258 (52%), Positives = 181/258 (70%), Gaps = 2/258 (0%)
Query: 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEP 73
+++ HFVLVH + HGAW WYK+KP LE+AGHRVTA++LAASGI+ + IQ V + EY++P
Sbjct: 2 ERKHHFVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKP 61
Query: 74 LLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVER 133
L+E L SL +E+VILVG SFGG+++ALAAD FP KI V +FL AF+PDT H PS+V+++
Sbjct: 62 LIETLKSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDK 121
Query: 134 FSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLL 193
+ E +P D ++S + N + + G KF+ +LYQ P ED ELAKML + G
Sbjct: 122 YME-MPGGLG-DCEFSSHETRNGTMSLLKMGPKFMKARLYQNCPIEDYELAKMLHRQGSF 179
Query: 194 FTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAM 253
FT++LSK +FS EGYGSV+R +V S +D IP +F +WMI N V++V I G DHM M
Sbjct: 180 FTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNVSKVYEIDGGDHMVM 239
Query: 254 LSKPQPLSDCFSQIAHKY 271
LSKPQ L D S IA Y
Sbjct: 240 LSKPQKLFDSLSAIATDY 257
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 165/254 (64%), Gaps = 2/254 (0%)
Query: 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEI 77
HFVL+H HGAW W+K+KP LEA GH+VTA+DLAASG++ ++I+++ SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 78 LASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSES 137
L +L EKVILVG S GGL++A+AADK+ KI+ A+F + +PDT+H PSYVV++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 138 IPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDE 197
P + DT Y + + G L LY L PE+ ELAKML + G LF +
Sbjct: 125 FP--DWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNI 182
Query: 198 LSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKP 257
L+K F+ EGYGS+K+ +V +D+D EFQ W I+N ++V ++G DH+ L+K
Sbjct: 183 LAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHLLQLTKT 242
Query: 258 QPLSDCFSQIAHKY 271
+ +++ ++A Y
Sbjct: 243 KEIAEILQEVADTY 256
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 164/254 (64%), Gaps = 2/254 (0%)
Query: 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEI 77
HFVL+H HGAW W+K+KP LEA GH+VTA+DLAASG++ ++I+++ SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 78 LASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSES 137
L +L EKVILVG S GGL++A+AADK+ KI+ A+F + +PDT+H PSYVV++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYXEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 138 IPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDE 197
P + DT Y + + G L LY L PE+ ELAKML + G LF +
Sbjct: 125 FP--DWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNI 182
Query: 198 LSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKP 257
L+K F+ EGYGS+K+ +V +D+D EFQ W I+N ++V ++G DH L+K
Sbjct: 183 LAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQLTKT 242
Query: 258 QPLSDCFSQIAHKY 271
+ +++ ++A Y
Sbjct: 243 KEIAEILQEVADTY 256
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 231 bits (588), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 164/254 (64%), Gaps = 2/254 (0%)
Query: 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEI 77
HFVL+H HGAW W+K+KP LEA GH+VTA+DLAASG++ ++I+++ SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 78 LASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSES 137
L +L EKVILVG S GGL++A+AADK+ KI+ A+F + +PDT+H PSYVV++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 138 IPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDE 197
P + DT Y + + G L LY L PE+ ELAKML + G LF +
Sbjct: 125 FP--DWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNI 182
Query: 198 LSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKP 257
L+K F+ EGYGS+K+ +V +D+D EFQ W I+N ++V ++G DH L+K
Sbjct: 183 LAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQLTKT 242
Query: 258 QPLSDCFSQIAHKY 271
+ +++ ++A Y
Sbjct: 243 KEIAEILQEVADTY 256
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 230 bits (587), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 164/254 (64%), Gaps = 2/254 (0%)
Query: 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEI 77
HFVL+H HGAW W+K+KP LEA GH+VTA+DLAASG++ ++I+++ SF EY+EPLL
Sbjct: 4 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 63
Query: 78 LASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSES 137
L +L EKVILVG S GGL++A+AADK+ KI+ A+F + +PDT+H PSYVV++ E
Sbjct: 64 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 123
Query: 138 IPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDE 197
P + DT Y + + G L LY L PE+ ELAKML + G LF +
Sbjct: 124 FP--DWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNI 181
Query: 198 LSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKP 257
L+K F+ EGYGS+K+ +V +D+D EFQ W I+N ++V ++G DH L+K
Sbjct: 182 LAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQLTKT 241
Query: 258 QPLSDCFSQIAHKY 271
+ +++ ++A Y
Sbjct: 242 KEIAEILQEVADTY 255
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 169/259 (65%), Gaps = 7/259 (2%)
Query: 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL 75
+KHFVLVH + HGAWCWYK+ + ++GH VTA+DL ASGIN K+ + +F +Y PL+
Sbjct: 12 KKHFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFS 135
E +ASL A+EK+ILVGH+ GGL+++ A + FP KISVA+FL+ MP + V +
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAG 131
Query: 136 ESIPREERLDTQYSIIDESNPSR--MSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLL 193
++ +LD + E+ P+ +++ G KFL +Y LSP EDL LA LV+P L
Sbjct: 132 SAV--LGQLDN--CVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYL 187
Query: 194 F-TDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252
+ +++SK S++ YGSVKR F+ + +++ + KEF + MI+ NP +EV I+G+DH+
Sbjct: 188 YLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDHVT 247
Query: 253 MLSKPQPLSDCFSQIAHKY 271
M+SKPQ L IA+KY
Sbjct: 248 MMSKPQQLFTTLLSIANKY 266
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 169/259 (65%), Gaps = 7/259 (2%)
Query: 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL 75
+KHFVLVH + HGAWCWYK+ + ++GH VTA+DL ASGIN K+ + +F +Y PL+
Sbjct: 12 KKHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFS 135
E +ASL A+EK+ILVGH+ GGL+++ A + FP KISVA+FL+ MP + V +
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAG 131
Query: 136 ESIPREERLDTQYSIIDESNPSR--MSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLL 193
++ +LD + E+ P+ +++ G KFL +Y LSP EDL LA LV+P L
Sbjct: 132 SAV--LGQLDN--CVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYL 187
Query: 194 F-TDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252
+ +++SK S++ YGSVKR F+ + +++ + KEF + MI+ NP +EV I+G+DH+
Sbjct: 188 YLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDHVT 247
Query: 253 MLSKPQPLSDCFSQIAHKY 271
M+SKPQ L IA+KY
Sbjct: 248 MMSKPQQLFTTLLSIANKY 266
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 168/259 (64%), Gaps = 7/259 (2%)
Query: 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL 75
+KHFVLVH + HGAWCWYK+ + ++GH VTA+DL ASGIN K+ + +F +Y PL+
Sbjct: 12 KKHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFS 135
E +ASL A+EK+ILVGH+ GGL+++ A + FP KISVA+FL+ MP + V +
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAG 131
Query: 136 ESIPREERLDTQYSIIDESNPSR--MSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLL 193
++ +LD + E+ P+ +++ G KFL +Y LSP EDL LA LV+P L
Sbjct: 132 SAV--LGQLDN--CVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYL 187
Query: 194 F-TDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252
+ +++SK S++ YGSVKR F+ + +++ + KEF + MI+ NP +EV I+G+D +
Sbjct: 188 YLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDAVT 247
Query: 253 MLSKPQPLSDCFSQIAHKY 271
M+SKPQ L IA+KY
Sbjct: 248 MMSKPQQLFTTLLSIANKY 266
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 164/256 (64%), Gaps = 3/256 (1%)
Query: 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEI 77
HFVL+H HGAW W+K+KP LE AGH+VTA+D+AASGI+ ++I+ + SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 64
Query: 78 LASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSES 137
L L EKVI+VG S GL++A+AAD++ KI+ +F + +PDT H PSY VE+ ES
Sbjct: 65 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 124
Query: 138 IPREERLDTQY-SIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTD 196
P + DT+Y + + + + ++ G L L+ + ELAKM+++PG LF +
Sbjct: 125 FP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRPGSLFQN 182
Query: 197 ELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSK 256
L++ +F+ +GYGS+ + ++ +D+D +FQ+W I N P ++V ++G DH L+K
Sbjct: 183 VLAQRPKFTEKGYGSIPKVYIWTDQDKIFLPDFQRWQIANYPPDKVYQVQGGDHKLQLTK 242
Query: 257 PQPLSDCFSQIAHKYA 272
+ ++ ++A YA
Sbjct: 243 TEEVAHILQEVADAYA 258
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 164/256 (64%), Gaps = 3/256 (1%)
Query: 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEI 77
HFVL+H HGAW W+K+KP LE AGH+VTA+D+AASGI+ ++I+ + SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 64
Query: 78 LASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSES 137
L L EKVI+VG S GL++A+AAD++ KI+ +F + +PDT H PSY VE+ ES
Sbjct: 65 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 124
Query: 138 IPREERLDTQY-SIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTD 196
P + DT+Y + + + + ++ G L L+ + ELAKM+++PG LF +
Sbjct: 125 FP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRPGSLFQN 182
Query: 197 ELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSK 256
L++ +F+ +GYGS+K+ ++ +D+D +FQ+W I N ++V ++G DH L+K
Sbjct: 183 VLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQLTK 242
Query: 257 PQPLSDCFSQIAHKYA 272
+ ++ ++A YA
Sbjct: 243 TEEVAHILQEVADAYA 258
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 213 bits (542), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 167/267 (62%), Gaps = 7/267 (2%)
Query: 7 VKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRS 66
+ KM A HFVL+H HGAW W+K+KP LE AGH+VTA+D+AASGI+ ++I+ + S
Sbjct: 2 ISKMVTA----HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINS 57
Query: 67 FYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQ 126
F EY+EPLL L L EKVI+VG S GL++A+AAD++ KI+ +F + +PDT H
Sbjct: 58 FDEYSEPLLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHS 117
Query: 127 PSYVVERFSESIPREERLDTQY-SIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAK 185
PSY VE+ ES P + DT+Y + + + + ++ G L L+ + ELAK
Sbjct: 118 PSYTVEKLLESFP--DARDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAK 175
Query: 186 MLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAI 245
M+++ G LF + L++ +F+ +GYGS+K+ ++ +D+D +FQ+W I N ++V +
Sbjct: 176 MVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQV 235
Query: 246 KGADHMAMLSKPQPLSDCFSQIAHKYA 272
+G DH L+K + ++ ++A YA
Sbjct: 236 QGGDHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 167/267 (62%), Gaps = 7/267 (2%)
Query: 7 VKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRS 66
+ KM A HFVL+H HGAW W+K+KP LE AGH+VTA+D+AASGI+ ++I+ + S
Sbjct: 2 ISKMVTA----HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINS 57
Query: 67 FYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQ 126
F EY+EPLL L L EKVI+VG S GL++A+AAD++ KI+ +F + +PDT H
Sbjct: 58 FDEYSEPLLTFLEKLPQGEKVIIVGESXAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHS 117
Query: 127 PSYVVERFSESIPREERLDTQY-SIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAK 185
PSY VE+ ES P + DT+Y + + + + ++ G L L+ + ELAK
Sbjct: 118 PSYTVEKLLESFP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAK 175
Query: 186 MLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAI 245
M+++ G LF + L++ +F+ +GYGS+K+ ++ +D+D +FQ+W I N ++V +
Sbjct: 176 MVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQV 235
Query: 246 KGADHMAMLSKPQPLSDCFSQIAHKYA 272
+G DH L+K + ++ ++A YA
Sbjct: 236 QGGDHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 167/267 (62%), Gaps = 7/267 (2%)
Query: 7 VKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRS 66
+ KM A HFVL+H HGAW W+K+KP LE AGH+VTA+D+AASGI+ ++I+ + S
Sbjct: 2 ISKMVTA----HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINS 57
Query: 67 FYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQ 126
F EY+EPLL L L EKVI+VG S GL++A+AAD++ KI+ +F + +PDT H
Sbjct: 58 FDEYSEPLLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHS 117
Query: 127 PSYVVERFSESIPREERLDTQY-SIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAK 185
PSY VE+ ES P + DT+Y + + + + ++ G L L+ + ELAK
Sbjct: 118 PSYTVEKLLESFP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAK 175
Query: 186 MLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAI 245
M+++ G LF + L++ +F+ +GYGS+K+ ++ +D+D +FQ+W I N ++V +
Sbjct: 176 MVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQV 235
Query: 246 KGADHMAMLSKPQPLSDCFSQIAHKYA 272
+G DH L+K + ++ ++A YA
Sbjct: 236 QGGDHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 167/267 (62%), Gaps = 7/267 (2%)
Query: 7 VKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRS 66
+ KM A HFVL+H HGAW W+K+KP LE AGH+VTA+D+AASGI+ ++I+ + S
Sbjct: 2 ISKMVTA----HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINS 57
Query: 67 FYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQ 126
F EY+EPLL L L EKVI+VG + GL++A+AAD++ KI+ +F + +PDT H
Sbjct: 58 FDEYSEPLLTFLEKLPQGEKVIIVGEACAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHS 117
Query: 127 PSYVVERFSESIPREERLDTQY-SIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAK 185
PSY VE+ ES P + DT+Y + + + + ++ G L L+ + ELAK
Sbjct: 118 PSYTVEKLLESFP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAK 175
Query: 186 MLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAI 245
M+++ G LF + L++ +F+ +GYGS+K+ ++ +D+D +FQ+W I N ++V +
Sbjct: 176 MVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQV 235
Query: 246 KGADHMAMLSKPQPLSDCFSQIAHKYA 272
+G DH L+K + ++ ++A YA
Sbjct: 236 QGGDHKLQLTKTEEVAHILQEVADAYA 262
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMK-----KIQDVRSFYEYNEPL 74
+ +HG+ ++ W + P + AAG+R A DL G + K ++QD ++ +
Sbjct: 33 LFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYRLQDHVAYXD----- 87
Query: 75 LEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSY 129
+ +L D+ V+++ H +G + A P +++ F A +P PSY
Sbjct: 88 -GFIDALGLDDXVLVI-HDWGSVIGXRHARLNPDRVAAVAFXEALVPPALPXPSY 140
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 29/219 (13%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILA 79
L HG + W P L AG+RV AMD+ G + + E E +E+L
Sbjct: 43 CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG-------ESSAPPEIEEYCMEVLC 95
Query: 80 SLSAD-------EKVILVGHSFGGLSVALAADKFPHKI-SVAIFLTAFMP---------D 122
+ + +GH +GG+ V A +P ++ +VA T F+P
Sbjct: 96 KEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLES 155
Query: 123 TKHQPSYVVE-RFSESIPREERLDTQYSIIDES--NPSRMSILFGHKFLTLKLYQLSPPE 179
K P + + F E E L+ S +S S S+L HK ++ PE
Sbjct: 156 IKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPE 215
Query: 180 DLELAKMLVKPGLLFTDELSKANEFSN--EGYGSVKRDF 216
+ L++M+ + + F + K + F Y +++R++
Sbjct: 216 EPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNW 254
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 29/219 (13%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILA 79
L HG + W P L AG+RV AMD MK + + E E +E+L
Sbjct: 58 CLCHGFPESWYSWRYQIPALAQAGYRVLAMD-------MKGYGESSAPPEIEEYCMEVLC 110
Query: 80 SLSAD-------EKVILVGHSFGGLSVALAADKFPHKI-SVAIFLTAFMP---------D 122
+ + +GH +GG+ V A +P ++ +VA T F+P
Sbjct: 111 KEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLES 170
Query: 123 TKHQPSYVVE-RFSESIPREERLDTQYSIIDES--NPSRMSILFGHKFLTLKLYQLSPPE 179
K P + + F E E L+ S +S S S+L HK ++ PE
Sbjct: 171 IKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPE 230
Query: 180 DLELAKMLVKPGLLFTDELSKANEFSN--EGYGSVKRDF 216
+ L++M+ + + F + K + F Y +++R++
Sbjct: 231 EPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNW 269
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 29/219 (13%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILA 79
L HG + W P L AG+RV AMD+ G + + E E +E+L
Sbjct: 262 CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG-------ESSAPPEIEEYCMEVLC 314
Query: 80 SLSAD-------EKVILVGHSFGGLSVALAADKFPHKI-SVAIFLTAFMP---------D 122
+ + +GH +GG+ V A +P ++ +VA T F+P
Sbjct: 315 KEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLES 374
Query: 123 TKHQPSYVVE-RFSESIPREERLDTQYSIIDES--NPSRMSILFGHKFLTLKLYQLSPPE 179
K P + + F E E L+ S +S S S+L HK ++ PE
Sbjct: 375 IKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPE 434
Query: 180 DLELAKMLVKPGLLFTDELSKANEFSN--EGYGSVKRDF 216
+ L++M+ + + F + K + F Y +++R++
Sbjct: 435 EPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNW 473
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQD-VRSFYEYNEPLLEI 77
F+ +HG ++ + K+ P AAG RV A DL G + K D V +F + LL
Sbjct: 49 FLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAF 108
Query: 78 LASLSADEKVILVGHSFGG-LSVALAADK 105
L +L E+V LV +GG L + L D+
Sbjct: 109 LDALQL-ERVTLVCQDWGGILGLTLPVDR 136
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMK-KIQDVRSFYEYNEPLLEIL 78
VL+HG + W P L AG+RV A+D G + K ++Q E ++ +L
Sbjct: 37 VLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVL 96
Query: 79 ASLSADEKVILVGHSFG 95
S A E+ +VGH +G
Sbjct: 97 DSYGA-EQAFVVGHDWG 112
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMK-KIQDVRSFYEYNEPLLEIL 78
VL+HG + W P L AG+RV A+D G + K ++Q E ++ +L
Sbjct: 31 VLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVL 90
Query: 79 ASLSADEKVILVGHSFG 95
S A E+ +VGH +G
Sbjct: 91 DSYGA-EQAFVVGHDWG 106
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEIL 78
L HG + W P L AG RV A+D+ G D S E E +E+L
Sbjct: 259 LCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYG-------DSSSPPEIEEYAMELL 311
Query: 79 ASLSAD-------EKVILVGHSFGGLSVALAADKFPHKI-SVAIFLTAFM-PDTKHQPSY 129
+ + +GH + G+ V A +P ++ +VA T FM PD P
Sbjct: 312 CKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDPDVSPMK 371
Query: 130 VVERFSESIP 139
V+ SIP
Sbjct: 372 VI----RSIP 377
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 1 MELTEKVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKK 60
+E+ K + K V HG+ ++ W + P LE G R+ A DL G + K
Sbjct: 15 LEIAGKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKL 73
Query: 61 IQDVRSFYEYNEP---LLEILASLSADEKVILVGHSFG 95
Y Y E L + +L + V+LV H +G
Sbjct: 74 SPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLHDWG 111
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 1 MELTEKVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKK 60
+E+ K + K V HG+ ++ W + P LE G R+ A DL G + K
Sbjct: 13 LEIAGKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKL 71
Query: 61 IQDVRSFYEYNEP---LLEILASLSADEKVILVGHSFG 95
Y Y E L + +L + V+LV H +G
Sbjct: 72 SPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLHDWG 109
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 12/125 (9%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILA 79
+ +HG W +V L A G+RV A DL G ++ V S+ L LA
Sbjct: 30 LCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHG-RSSHLEMVTSYSS-----LTFLA 83
Query: 80 SLS------ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVER 133
+ D+ ++LVGHS G + A P KI I + +P + + V +
Sbjct: 84 QIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQ 143
Query: 134 FSESI 138
+ +
Sbjct: 144 LTTCL 148
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 20 VLVHGSNHGAWCW----YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL 75
VL+HGS GA W + P +EA G+RV +D G + + S + N +L
Sbjct: 40 VLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPGWG-KSDSVVNSGSRSDLNARIL 97
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFL---TAFMPDTKHQPSYVVE 132
+ + K+ L+G+S GG S K+P ++ + + T M P+ ++
Sbjct: 98 KSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIK 157
Query: 133 RFSE 136
R ++
Sbjct: 158 RLNQ 161
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEIL 78
F+ +HG ++ + K+ P +G RV A D G + K + + +E++ L L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 79 ASLSADEKVILVGHSFG---GLSVALAADKFPHKISVAIFLTA-FMPDTKHQPSY 129
+ LV +G GL++ +A P + I + A M D QP++
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMAD---PSRFKRLIIMNACLMTDPVTQPAF 161
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEIL 78
F+ +HG ++ + K+ P +G RV A D G + K + + +E++ L L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 79 ASLSADEKVILVGHSFG---GLSVALAADKFPHKISVAIFLTA-FMPDTKHQPSY 129
+ LV +G GL++ +A P + I + A M D QP++
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMAD---PSRFKRLIIMNACLMTDPVTQPAF 161
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEIL 78
F+ +HG ++ + K+ P +G RV A D G + K + + +E++ L L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 79 ASLSADEKVILVGHSFG---GLSVALAADKFPHKISVAIFLTA-FMPDTKHQPSY 129
+ LV +G GL++ +A P + I + A M D QP++
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMAD---PSRFKRLIIMNACLMTDPVTQPAF 161
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEIL 78
F+ +HG ++ + K+ P +G RV A D G + K + + +E++ L L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 79 ASLSADEKVILVGHSFG---GLSVALAADKFPHKISVAIFLTA-FMPDTKHQPSY 129
+ LV +G GL++ +A P + I + A M D QP++
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMAD---PSRFKRLIIMNAXLMTDPVTQPAF 161
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEIL 78
F+ +HG ++ + K+ P +G RV A D G + K + + +E++ L L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 79 ASLSADEKVILVGHSFG---GLSVALAADKFPHKISVAIFLTA-FMPDTKHQPSY 129
+ LV +G GL++ +A P + I + A M D QP++
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMAD---PSRFKRLIIMNACLMTDPVTQPAF 161
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE---PLLE 76
VL+HG W + L A G+RV D G + K V + Y+Y+ L
Sbjct: 27 VLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSK----VNTGYDYDTFAADLHT 82
Query: 77 ILASLSADEKVILVGHSFGGLSVALAADKFPH-KISVAIFLTAFMPDTKHQPSYVVERFS 135
+L +L + V+LVG S G +A ++ H +++ FL + P ++V+R
Sbjct: 83 VLETLDLRD-VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEP-------FLVQRDD 134
Query: 136 --ESIPRE 141
E +P+E
Sbjct: 135 NPEGVPQE 142
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLE 76
+ +L HG N A W + L AG+RV A+D + K SF +
Sbjct: 47 RTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHA 106
Query: 77 ILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFL 116
+L L + ++GHS GG A +P ++ + +
Sbjct: 107 LLERLGV-ARASVIGHSXGGXLATRYALLYPRQVERLVLV 145
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEIL 78
F+ +HG ++ + K+ P +G RV A D G + K + + +E++ L L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 79 ASLSADEKVILVGHSFG---GLSVALAADKFPHKISVAIFLTA-FMPDTKHQPSY 129
+ LV +G GL++ +A P + I + A M D QP++
Sbjct: 110 IERLDLRNITLVVQXWGGFLGLTLPMAD---PSRFKRLIIMNACLMTDPVTQPAF 161
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 11 TEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEY 70
+E + + +HG+ ++ W V P +E R DL G + K ++
Sbjct: 38 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDH 96
Query: 71 NEPLLEILASLSADEKVILVGHSFGG 96
+ L L+ +K+I VGH +G
Sbjct: 97 YKYLTAWFELLNLPKKIIFVGHDWGA 122
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 11 TEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEY 70
+E + + +HG+ ++ W V P +E R DL G + K ++
Sbjct: 38 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDH 96
Query: 71 NEPLLEILASLSADEKVILVGHSFGG 96
+ L L+ +K+I VGH +G
Sbjct: 97 YKYLTAWFELLNLPKKIIFVGHDWGA 122
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 11 TEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEY 70
+E + + +HG+ ++ W V P +E R DL G + K ++
Sbjct: 39 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDH 97
Query: 71 NEPLLEILASLSADEKVILVGHSFGG 96
+ L L+ +K+I VGH +G
Sbjct: 98 YKYLTAWFELLNLPKKIIFVGHDWGA 123
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 11 TEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEY 70
+E + + +HG+ ++ W V P +E R DL G + K ++
Sbjct: 39 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDH 97
Query: 71 NEPLLEILASLSADEKVILVGHSFGG 96
+ L L+ +K+I VGH +G
Sbjct: 98 YKYLTAWFELLNLPKKIIFVGHDWGA 123
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 1 MELTEKVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKK 60
M+L + + VLVHG G+ V R H + +D+ G++ +
Sbjct: 1 MKLNIRAQTAQNQHNNSPIVLVHGL-FGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPR- 58
Query: 61 IQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSV----ALAADKFPHKISVAI 114
+ V ++ + L++ L +L D K +GHS GG +V ALA D+ +++ I
Sbjct: 59 -EPVMNYPAMAQDLVDTLDALQID-KATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114
>pdb|2QS9|A Chain A, Crystal Structure Of The Human Retinoblastoma-Binding
Protein 9 (Rbbp-9). Nesg Target Hr2978
pdb|2QS9|B Chain B, Crystal Structure Of The Human Retinoblastoma-Binding
Protein 9 (Rbbp-9). Nesg Target Hr2978
Length = 194
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 81 LSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPD 122
L DEK I++GHS G ++ A+ H++ + ++A+ D
Sbjct: 63 LHCDEKTIIIGHSSGAIAAXRYAET--HRVYAIVLVSAYTSD 102
>pdb|3C8D|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|C Chain C, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|D Chain D, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
Length = 403
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 73 PLLEILASLS-ADEKVILVGHSFGGLSVALAADKFPHKISVAI 114
PL++++A S ++ ++ G SFGGLS A +P + +
Sbjct: 263 PLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVL 305
>pdb|2B20|A Chain A, Crystal Structure Of Enterochelin Esterase From Shigella
Flexneri Enterochelin Esterase
pdb|3C87|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of Enterobactin
pdb|3C87|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of Enterobactin
pdb|3C8H|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|C Chain C, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|D Chain D, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
Length = 403
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 73 PLLEILASLS-ADEKVILVGHSFGGLSVALAADKFPHKISVAI 114
PL++++A S ++ ++ G SFGGLS A +P + +
Sbjct: 263 PLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVL 305
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio
Cholerae, Pfam Abhydrolase
Length = 264
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLE-IL 78
VLVHG W V L +DL G N ++ D +F E E + + +
Sbjct: 20 VLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTNPERHCD--NFAEAVEXIEQTVQ 77
Query: 79 ASLSADEKVILVGHSFGG 96
A ++++ VILVG+S GG
Sbjct: 78 AHVTSEVPVILVGYSLGG 95
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 32 WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL----EILASLSADEKV 87
WY ++ L++ G +V +L SG + R E LL ++LA+ A KV
Sbjct: 30 WYGIQSDLQSHGAKVYVANL--SGFQSDDGPNGR-----GEQLLAYVKQVLAATGA-TKV 81
Query: 88 ILVGHSFGGLSVALAADKFPHKIS 111
L+GHS GGL+ A P ++
Sbjct: 82 NLIGHSQGGLTSRYVAAVAPQLVA 105
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 32 WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL----EILASLSADEKV 87
WY ++ L++ G +V +L SG + R E LL ++LA+ A KV
Sbjct: 30 WYGIQSDLQSHGAKVYVANL--SGFQSDDGPNGR-----GEQLLAYVKQVLAATGA-TKV 81
Query: 88 ILVGHSFGGLSVALAADKFPHKIS 111
L+GHS GGL+ A P ++
Sbjct: 82 NLIGHSQGGLTSRYVAAVAPQLVA 105
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 20 VLVHGSNHGAWC---WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLE 76
+L+HGS G W P L +RV A D+ G + S + + ++
Sbjct: 29 ILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRPENYNYSKDSWVDHIIG 87
Query: 77 ILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTA 118
I+ +L EK +VG+SFGG A ++ ++ + + A
Sbjct: 88 IMDALEI-EKAHIVGNSFGGGLAIATALRYSERVDRMVLMGA 128
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 32 WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL----EILASLSADEKV 87
WY ++ L++ G +V +L SG + R E LL ++LA+ A KV
Sbjct: 29 WYGIQSDLQSHGAKVYVANL--SGFQSDDGPNGR-----GEQLLAYVKQVLAATGA-TKV 80
Query: 88 ILVGHSFGGLSVALAADKFPHKIS 111
L+GHS GGL+ A P ++
Sbjct: 81 NLIGHSQGGLTSRYVAAVAPQLVA 104
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 1 MELTEKVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKK 60
++ TE + +A +L+HG W+K+ P L A V A DL G + +
Sbjct: 10 VDTTEARINLVKAGHGAPLLLLHGYPQTHVMWHKIAPLL-ANNFTVVATDLRGYG-DSSR 67
Query: 61 IQDVRSFYEYNEPLL-----EILASLSADEKVILVGHSFGGLSVALAADKFPHKI 110
V Y++ ++ E+++ L E+ +VGH G A PH++
Sbjct: 68 PASVPHHINYSKRVMAQDQVEVMSKLGY-EQFYVVGHDRGARVAHRLALDHPHRV 121
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 9 KMTEAKKQKHFVLVHGSNHGAWC---WYKVKPRLEAAGHRVTAMDLAASGINMKK----I 61
+ EA K + +L+HG GA W V P L A +RV AMD+ G K
Sbjct: 29 RYLEAGKGQPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGFGKTAKPDIEYT 87
Query: 62 QDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLS 98
QD R + L + + +++ D KV +VG+S GG +
Sbjct: 88 QDRRIRH-----LHDFIKAMNFDGKVSIVGNSMGGAT 119
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 19 FVLVHGSNHGAWCWY----KVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPL 74
+L+HG H A W + R++ R+ A+DL + G K + S + +
Sbjct: 41 LLLLHGGGHSALSWAVFTAAIISRVQC---RIVALDLRSHGETKVKNPEDLSAETMAKDV 97
Query: 75 LEILASLSAD--EKVILVGHSFGG 96
++ ++ D ++L+GHS GG
Sbjct: 98 GNVVEAMYGDLPPPIMLIGHSMGG 121
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE---PLLE 76
VL+HG W + L AG+RV D G + + + Y+Y+ L
Sbjct: 28 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPT----TGYDYDTFAADLNT 83
Query: 77 ILASLSADEKVILVGHSFGGLSVALAADKF-PHKISVAIFLTAFMP 121
+L +L + V LVG S G VA + +I+ FL + P
Sbjct: 84 VLETLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAAVAFLASLEP 128
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 1 MELTEKVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKK 60
M+L + + VLVHG G+ V R H + +D+ G++ +
Sbjct: 1 MKLNIRAQTAQNQHNNSPIVLVHGL-FGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPR- 58
Query: 61 IQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSV----ALAADKFPHKISVAI 114
+ V ++ + L++ L + D K +GHS GG +V ALA D+ +++ I
Sbjct: 59 -EPVMNYPAMAQDLVDTLDAQQID-KATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114
>pdb|1FJH|A Chain A, The Crystal Structure Of 3-Alpha-Hydroxysteroid
Dehydrogenase From Comamonas Testosteroni, A Member Of
The Short Chain DehydrogenaseREDUCTASE FAMILY
pdb|1FJH|B Chain B, The Crystal Structure Of 3-Alpha-Hydroxysteroid
Dehydrogenase From Comamonas Testosteroni, A Member Of
The Short Chain DehydrogenaseREDUCTASE FAMILY
pdb|1FK8|A Chain A, The Crystal Structure Of The Binary Complex With Nad Of 3-
Alpha-Hydroxysteroid Dehydrogenase From Comamonas
Testosteroni, A Member Of The Short Chain
DehydrogenaseREDUCTASE FAMILY
pdb|1FK8|B Chain B, The Crystal Structure Of The Binary Complex With Nad Of 3-
Alpha-Hydroxysteroid Dehydrogenase From Comamonas
Testosteroni, A Member Of The Short Chain
DehydrogenaseREDUCTASE FAMILY
Length = 257
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 39 LEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLS 98
LEAAGH++ +D+ + + I D+ + + + ++LA S +++ G +
Sbjct: 21 LEAAGHQIVGIDIR----DAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQT 76
Query: 99 VALAADKFPHKISVAIFLTAFMPDTK--HQPSYVV 131
L + + AF+P K HQP+ VV
Sbjct: 77 KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVV 111
>pdb|3FDK|A Chain A, Crystal Structure Of Hydrolase Dr0930 With Promiscuous
Catalytic Activity
Length = 323
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 188 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 225
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 20 VLVHGSNHGAWC---WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLE 76
+L+HGS G W P L +RV A D+ G + S + + ++
Sbjct: 29 ILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRPENYNYSKDSWVDHIIG 87
Query: 77 ILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTA 118
I+ +L EK +VG++FGG A ++ ++ + + A
Sbjct: 88 IMDALEI-EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGA 128
>pdb|3HTW|A Chain A, Organophosphorus Hydrolase From Deinococcus Radiodurans
With Cacodylate Bound
Length = 328
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 193 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 230
>pdb|2ZC1|A Chain A, Organophosphorus Hydrolase From Deinococcus Radiodurans
Length = 333
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 198 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 235
>pdb|3GU9|A Chain A, R228a Mutation In Organophosphorus Hydrolase From
Deinococcu Radiodurans
Length = 331
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 196 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 233
>pdb|3GU2|A Chain A, Y97lG100-E101- Mutant In Organophosphorus Hydrolase
Length = 336
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 201 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 238
>pdb|3GU1|A Chain A, Y97w Mutant In Organophosphorus Hydrolase From Deinococcus
Radiodurans
Length = 337
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 202 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 239
>pdb|3GTX|A Chain A, D71gE101G MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM
DEINOCO Radiodurans
Length = 339
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 204 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 241
>pdb|3GTI|A Chain A, D71gE101GM234L MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 202 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 239
>pdb|3GTF|A Chain A, D71gE101GV235L MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 202 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 239
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLE 76
K VL+HG W P L AG+RV D G + + + YEY+ +
Sbjct: 28 KPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEG----YEYDTFTSD 83
Query: 77 --ILASLSADEKVILVGHSFGGLSVALAADKF-PHKISVAIFLTAFMP 121
L + V LVG S GG VA + +I +F A P
Sbjct: 84 LHQLLEQLELQNVTLVGFSXGGGEVARYISTYGTDRIEKVVFAGAVPP 131
>pdb|3GTH|A Chain A, D71gE101GM234I MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113
E+L SL AD I++GH G A + H +S+A
Sbjct: 202 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 239
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 75 LEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTA 118
+E + +LS KV L+GHS GG ++ A P I+ A + A
Sbjct: 64 VEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 84 DEKVILVGHSFGGLSVALAADKFPHKISVAIFLTA 118
++ VI +G S+GG+ A K+PH + A+ +A
Sbjct: 125 NQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 33 YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGH 92
Y + R G R+TA +L GI++ I D + + E +I A + +++ G
Sbjct: 211 YACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEK--QISAVIVGADRIAKNGD 268
Query: 93 S---FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREER 143
+ G +A+ A+ F VA L+ F DTK + IP EER
Sbjct: 269 TANKIGTYGLAILANAFDIPFFVAAPLSTF--DTK-------VKCGADIPIEER 313
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 195 TDELSKANEFSNEGYGSVKRD--FVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252
TD+++ AN Y SVK V D+D F+ ++ P + V+ +KGA H
Sbjct: 139 TDKINAAN------YASVKTPALIVYGDQDPMGQTSFEH--LKQLPNHRVLIMKGAGHPC 190
Query: 253 MLSKPQ 258
L KP+
Sbjct: 191 YLDKPE 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,760,763
Number of Sequences: 62578
Number of extensions: 301881
Number of successful extensions: 896
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 92
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)